sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | vg 1.59.0+ds-0.1 (amd64) Wed, 02 Jul 2025 17:08:51 +0000 | +==============================================================================+ Package: vg Version: 1.59.0+ds-0.1 Source Version: 1.59.0+ds-0.1 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.2ObdUJ1kaD... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/vg-v2qOrT/resolver-80qvXN' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [213 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [11.0 MB] Get:3 http://mirror.einval.org/debian unstable/main amd64 Packages [10.1 MB] Get:4 http://mirror.einval.org/debian unstable/main arm64 Packages [10.0 MB] Fetched 31.3 MB in 7s (4357 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: dpkg dpkg-dev libaudit-common libaudit1 libdpkg-perl libpam-modules libpam-modules-bin libpam-runtime libpam0g 9 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4120 kB of archives. After this operation, 1024 B of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 dpkg arm64 1.22.21 [1521 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libpam-runtime all 1.7.0-5 [249 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libaudit-common all 1:4.0.5-1 [13.5 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libaudit1 arm64 1:4.0.5-1 [58.9 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libpam0g arm64 1.7.0-5 [68.8 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libpam-modules-bin arm64 1.7.0-5 [48.3 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libpam-modules arm64 1.7.0-5 [172 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 dpkg-dev all 1.22.21 [1338 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libdpkg-perl all 1.22.21 [650 kB] Preconfiguring packages ... Fetched 4120 kB in 0s (58.5 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12035 files and directories currently installed.) Preparing to unpack .../dpkg_1.22.21_arm64.deb ... Unpacking dpkg (1.22.21) over (1.22.20) ... Setting up dpkg (1.22.21) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12035 files and directories currently installed.) Preparing to unpack .../libpam-runtime_1.7.0-5_all.deb ... Unpacking libpam-runtime (1.7.0-5) over (1.7.0-3) ... Setting up libpam-runtime (1.7.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12035 files and directories currently installed.) Preparing to unpack .../libaudit-common_1%3a4.0.5-1_all.deb ... Unpacking libaudit-common (1:4.0.5-1) over (1:4.0.2-2) ... Setting up libaudit-common (1:4.0.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12035 files and directories currently installed.) Preparing to unpack .../libaudit1_1%3a4.0.5-1_arm64.deb ... Unpacking libaudit1:arm64 (1:4.0.5-1) over (1:4.0.2-2+b2) ... Setting up libaudit1:arm64 (1:4.0.5-1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12034 files and directories currently installed.) Preparing to unpack .../libpam0g_1.7.0-5_arm64.deb ... Unpacking libpam0g:arm64 (1.7.0-5) over (1.7.0-3) ... Setting up libpam0g:arm64 (1.7.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12034 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.7.0-5_arm64.deb ... Unpacking libpam-modules-bin (1.7.0-5) over (1.7.0-3) ... Setting up libpam-modules-bin (1.7.0-5) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12034 files and directories currently installed.) Preparing to unpack .../libpam-modules_1.7.0-5_arm64.deb ... Unpacking libpam-modules:arm64 (1.7.0-5) over (1.7.0-3) ... Setting up libpam-modules:arm64 (1.7.0-5) ... Installing new version of config file /etc/security/namespace.init ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12034 files and directories currently installed.) Preparing to unpack .../dpkg-dev_1.22.21_all.deb ... Unpacking dpkg-dev (1.22.21) over (1.22.20) ... Preparing to unpack .../libdpkg-perl_1.22.21_all.deb ... Unpacking libdpkg-perl (1.22.21) over (1.22.20) ... Setting up libdpkg-perl (1.22.21) ... Setting up dpkg-dev (1.22.21) ... Processing triggers for libc-bin (2.41-9) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'vg' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/vg.git Please use: git clone https://salsa.debian.org/med-team/vg.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 69.8 MB of source archives. Get:1 http://mirror.einval.org/debian unstable/main vg 1.59.0+ds-0.1 (dsc) [2839 B] Get:2 http://mirror.einval.org/debian unstable/main vg 1.59.0+ds-0.1 (tar) [69.7 MB] Get:3 http://mirror.einval.org/debian unstable/main vg 1.59.0+ds-0.1 (diff) [117 kB] Fetched 69.8 MB in 1s (101 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/vg-v2qOrT/vg-1.59.0+ds' with '<>' I: NOTICE: Log filtering will replace 'build/vg-v2qOrT' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), bsdextrautils | bsdmainutils, zlib1g-dev, rs, libffi-dev, protobuf-compiler, libprotoc-dev, libprotobuf-dev, libjansson-dev, libbz2-dev, libtinfo6, libncurses-dev, automake, libtool, jq, unzip, librdf0-dev, cmake, pkgconf, bc, gtk-doc-tools, bison, flex, gawk, liblz4-dev, liblzma-dev, libcairo2-dev, libpixman-1-dev, libdeflate-dev, libboost-program-options-dev, libjemalloc-dev, libbackward-cpp-dev, elfutils, libdw-dev, libelf-dev, libraptor2-dev, libsparsehash-dev, rapidjson-dev, libfml-dev, libfastahack-dev, libdivsufsort-dev, libtsl-hopscotch-map-dev, libvcflib-dev (>= 1.0.1), libhts-dev, help2man, python3:any, libsimde-dev, libzstd-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), bsdextrautils, zlib1g-dev, rs, libffi-dev, protobuf-compiler, libprotoc-dev, libprotobuf-dev, libjansson-dev, libbz2-dev, libtinfo6, libncurses-dev, automake, libtool, jq, unzip, librdf0-dev, cmake, pkgconf, bc, gtk-doc-tools, bison, flex, gawk, liblz4-dev, liblzma-dev, libcairo2-dev, libpixman-1-dev, libdeflate-dev, libboost-program-options-dev, libjemalloc-dev, libbackward-cpp-dev, elfutils, libdw-dev, libelf-dev, libraptor2-dev, libsparsehash-dev, rapidjson-dev, libfml-dev, libfastahack-dev, libdivsufsort-dev, libtsl-hopscotch-map-dev, libvcflib-dev (>= 1.0.1), libhts-dev, help2man, python3:any, libsimde-dev, libzstd-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 998:999 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1561 B] Get:5 copy:/<>/apt_archive ./ Packages [1391 B] Fetched 3567 B in 0s (129 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev bc binutils-x86-64-linux-gnu bison bsdextrautils cmake cmake-data comerr-dev:amd64 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-exe-wrapper:amd64 crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man docbook-xml docbook-xsl dwz elfutils fakeroot file flex fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gawk gcc-14-base:amd64 gcc-14-cross-base gcc-14-x86-64-linux-gnu gcc-14-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base girepository-tools girepository-tools:amd64 groff-base gtk-doc-tools help2man intltool-debian jq krb5-multidev:amd64 libarchive-zip-perl libarchive13t64 libasan8:amd64 libasan8-amd64-cross libasm1t64 libatomic1:amd64 libatomic1-amd64-cross libbackward-cpp-dev libblkid-dev:amd64 libblkid1:amd64 libboost-program-options-dev:amd64 libboost-program-options1.83-dev:amd64 libboost-program-options1.83.0:amd64 libboost1.83-dev:amd64 libbrotli-dev:amd64 libbrotli1 libbrotli1:amd64 libbz2-1.0:amd64 libbz2-dev:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcairo-gobject2:amd64 libcairo-script-interpreter2:amd64 libcairo2:amd64 libcairo2-dev:amd64 libcom-err2 libcom-err2:amd64 libcrypt-dev:amd64 libcrypt1:amd64 libcurl3t64-gnutls libcurl3t64-gnutls:amd64 libcurl4-gnutls-dev:amd64 libcurl4t64 libcurl4t64:amd64 libdb5.3t64:amd64 libdebhelper-perl libdebuginfod-common libdebuginfod1t64 libdeflate-dev:amd64 libdeflate0:amd64 libdisorder-dev:amd64 libdisorder0:amd64 libdivsufsort-dev:amd64 libdivsufsort3:amd64 libdw-dev:amd64 libdw1t64 libdw1t64:amd64 libelf-dev:amd64 libelf1t64 libelf1t64:amd64 libevent-2.1-7t64:amd64 libexpat1 libexpat1:amd64 libexpat1-dev:amd64 libfakeroot libfastahack-dev:amd64 libfastahack0:amd64 libffi-dev:amd64 libffi8 libffi8:amd64 libfile-stripnondeterminism-perl libfml-dev:amd64 libfml0:amd64 libfontconfig-dev:amd64 libfontconfig1:amd64 libfreetype-dev:amd64 libfreetype6:amd64 libgcc-14-dev:amd64 libgcc-14-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgcrypt20 libgcrypt20:amd64 libgio-2.0-dev:amd64 libgio-2.0-dev-bin libgirepository-2.0-0 libgirepository-2.0-0:amd64 libglib2.0-0t64 libglib2.0-0t64:amd64 libglib2.0-bin libglib2.0-data libglib2.0-dev:amd64 libglib2.0-dev-bin libgmp-dev:amd64 libgmp10:amd64 libgmpxx4ldbl:amd64 libgnutls-dane0t64:amd64 libgnutls-openssl27t64:amd64 libgnutls28-dev:amd64 libgnutls30t64 libgnutls30t64:amd64 libgomp1:amd64 libgomp1-amd64-cross libgpg-error0 libgpg-error0:amd64 libgssapi-krb5-2 libgssapi-krb5-2:amd64 libgssrpc4t64:amd64 libhogweed6t64:amd64 libhts-dev:amd64 libhts3t64:amd64 libhtscodecs2:amd64 libhwasan0:amd64 libhwasan0-amd64-cross libice-dev:amd64 libice6:amd64 libicu76:amd64 libidn2-0 libidn2-0:amd64 libidn2-dev:amd64 libitm1:amd64 libitm1-amd64-cross libjansson-dev:amd64 libjansson4:amd64 libjemalloc-dev:amd64 libjemalloc2:amd64 libjq1 libjson-c5 libjsoncpp26 libk5crypto3 libk5crypto3:amd64 libkadm5clnt-mit12:amd64 libkadm5srv-mit12:amd64 libkdb5-10t64:amd64 libkeyutils1 libkeyutils1:amd64 libkrb5-3 libkrb5-3:amd64 libkrb5-dev:amd64 libkrb5support0 libkrb5support0:amd64 libldap-dev:amd64 libldap2 libldap2:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libltdl7:amd64 liblz4-1:amd64 liblz4-dev:amd64 liblzma-dev:amd64 liblzma5:amd64 liblzo2-2:amd64 libmagic-mgc libmagic1t64 libmhash2:amd64 libmount-dev:amd64 libmount1:amd64 libncurses-dev:amd64 libncurses6:amd64 libncursesw6 libncursesw6:amd64 libnettle8t64:amd64 libnghttp2-14 libnghttp2-14:amd64 libnghttp2-dev:amd64 libnghttp3-9 libnghttp3-9:amd64 libnghttp3-dev:amd64 libngtcp2-16 libngtcp2-16:amd64 libngtcp2-crypto-gnutls-dev:amd64 libngtcp2-crypto-gnutls8 libngtcp2-crypto-gnutls8:amd64 libngtcp2-dev:amd64 libonig5 libosp5 libp11-kit-dev:amd64 libp11-kit0 libp11-kit0:amd64 libpcre2-16-0:amd64 libpcre2-32-0:amd64 libpcre2-8-0:amd64 libpcre2-dev:amd64 libpcre2-posix3:amd64 libpipeline1 libpixman-1-0:amd64 libpixman-1-dev:amd64 libpkgconf3 libpng-dev:amd64 libpng16-16t64:amd64 libproc2-0 libprotobuf-dev:amd64 libprotobuf-lite32t64:amd64 libprotobuf32t64 libprotobuf32t64:amd64 libprotoc-dev:amd64 libprotoc32t64 libprotoc32t64:amd64 libpsl-dev:amd64 libpsl5t64 libpsl5t64:amd64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0:amd64 libquadmath0-amd64-cross libraptor2-0:amd64 libraptor2-dev:amd64 librasqal3-dev:amd64 librasqal3t64:amd64 librdf0-dev:amd64 librdf0t64:amd64 libreadline8t64 librhash1 librtmp-dev:amd64 librtmp1 librtmp1:amd64 libsasl2-2 libsasl2-2:amd64 libsasl2-modules-db libsasl2-modules-db:amd64 libselinux1:amd64 libselinux1-dev:amd64 libsepol-dev:amd64 libsepol2:amd64 libsimde-dev libsm-dev:amd64 libsm6:amd64 libsmithwaterman-dev:amd64 libsmithwaterman0:amd64 libsparsehash-dev libssh2-1-dev:amd64 libssh2-1t64 libssh2-1t64:amd64 libssl-dev:amd64 libssl3t64:amd64 libssw-dev:amd64 libssw0:amd64 libstdc++-14-dev:amd64 libstdc++-14-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsysprof-capture-4-dev:amd64 libtabixpp-dev:amd64 libtabixpp0t64:amd64 libtasn1-6 libtasn1-6:amd64 libtasn1-6-dev:amd64 libtext-charwidth-perl libtext-wrapi18n-perl libtinfo6:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libtsl-hopscotch-map-dev libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunbound8:amd64 libunistring5 libunistring5:amd64 libuuid1:amd64 libuv1t64 libvcflib-dev:amd64 libvcflib2:amd64 libwfa2-0:amd64 libwfa2-dev:amd64 libx11-6:amd64 libx11-data libx11-dev:amd64 libxau-dev:amd64 libxau6:amd64 libxcb-render0:amd64 libxcb-render0-dev:amd64 libxcb-shm0:amd64 libxcb-shm0-dev:amd64 libxcb1:amd64 libxcb1-dev:amd64 libxdmcp-dev:amd64 libxdmcp6:amd64 libxext-dev:amd64 libxext6:amd64 libxml2 libxml2:amd64 libxml2-dev:amd64 libxrender-dev:amd64 libxrender1:amd64 libxslt1-dev:amd64 libxslt1.1 libxslt1.1:amd64 libxxhash-dev:amd64 libxxhash0:amd64 libyajl-dev:amd64 libyajl2:amd64 libzstd-dev:amd64 libzstd1:amd64 linux-libc-dev-amd64-cross m4 man-db media-types native-architecture netbase nettle-dev:amd64 opensp pkgconf pkgconf:amd64 pkgconf-bin po-debconf procps protobuf-compiler python3 python3-lxml python3-minimal python3-packaging python3-pygments python3.13 python3.13-minimal qemu-user rapidjson-dev readline-common rs sensible-utils sgml-base sgml-data tzdata ucf unzip uuid-dev:amd64 x11-common x11proto-dev xml-core xorg-sgml-doctools xsltproc xtrans-dev zlib1g:amd64 zlib1g-dev:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc bison-doc cmake-doc cmake-format elpa-cmake-mode ninja-build doc-base:amd64 gcc-14-locales cpp-14-doc cpp-doc dh-make docbook-defguide docbook-dsssl psgml dbtoepub docbook-xsl-doc-html | docbook-xsl-doc-pdf | docbook-xsl-doc-text | docbook-xsl-doc docbook-xsl-saxon fop libsaxon-java libxalan2-java libxslthl-java xalan flex-doc gcc-14-doc gawk-doc manpages-dev gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff dblatex krb5-doc:amd64 lrzip binutils-dev libdw-dev libunwind-dev libboost1.83-doc:amd64 libboost-atomic1.83-dev:amd64 libboost-chrono1.83-dev:amd64 libboost-container1.83-dev:amd64 libboost-context1.83-dev:amd64 libboost-contract1.83-dev:amd64 libboost-coroutine1.83-dev:amd64 libboost-date-time1.83-dev:amd64 libboost-exception1.83-dev:amd64 libboost-fiber1.83-dev:amd64 libboost-filesystem1.83-dev:amd64 libboost-graph-parallel1.83-dev:amd64 libboost-graph1.83-dev:amd64 libboost-iostreams1.83-dev:amd64 libboost-json1.83-dev:amd64 libboost-locale1.83-dev:amd64 libboost-log1.83-dev:amd64 libboost-math1.83-dev:amd64 libboost-mpi-python1.83-dev:amd64 libboost-mpi1.83-dev:amd64 libboost-nowide1.83-dev:amd64 libboost-numpy1.83-dev:amd64 libboost-python1.83-dev:amd64 libboost-random1.83-dev:amd64 libboost-regex1.83-dev:amd64 libboost-serialization1.83-dev:amd64 libboost-stacktrace1.83-dev:amd64 libboost-system1.83-dev:amd64 libboost-test1.83-dev:amd64 libboost-thread1.83-dev:amd64 libboost-timer1.83-dev:amd64 libboost-type-erasure1.83-dev:amd64 libboost-url1.83-dev:amd64 libboost-wave1.83-dev:amd64 libboost1.83-tools-dev:amd64 libmpfrc++-dev:amd64 libntl-dev:amd64 glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 libcairo2-doc:amd64 libcurl4-doc:amd64 libidn-dev:amd64 freetype2-doc:amd64 rng-tools rng-tools:amd64 gir1.2-glib-2.0-dev:amd64 libglib2.0-doc:amd64 libgdk-pixbuf2.0-bin libxml2-utils low-memory-monitor low-memory-monitor:amd64 gmp-doc:amd64 libgmp10-doc:amd64 libmpfr-dev:amd64 dns-root-data:amd64 gnutls-bin:amd64 gnutls-doc:amd64 gnutls-bin krb5-doc krb5-user krb5-user:amd64 libice-doc:amd64 binutils:amd64 liblzma-doc:amd64 cryptsetup-bin:amd64 ncurses-doc:amd64 libnghttp2-doc:amd64 p11-kit-doc:amd64 raptor2-utils:amd64 libraptor2-doc:amd64 librasqal3-doc:amd64 rasqal-utils:amd64 librdf-perl:amd64 librdf-ruby:amd64 python-librdf:amd64 librdf-storage-mysql:amd64 librdf-storage-postgresql:amd64 librdf-storage-sqlite:amd64 librdf-storage-virtuoso:amd64 redland-utils:amd64 libsm-doc:amd64 libssl-doc:amd64 libstdc++-14-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk uuid-runtime:amd64 libx11-doc:amd64 libxcb-doc:amd64 libxext-doc:amd64 m4-doc apparmor less www-browser doc-base libmail-box-perl protobuf-mode-el python3-doc python3-tk python3-venv python-lxml-doc python-pygments-doc ttf-bitstream-vera python3.13-venv python3.13-doc binfmt-support rapidjson-doc readline-doc sgml-base-doc perlsgml w3-recs zip Recommended packages: libfl-dev curl | wget | lynx bzip2-doc:amd64 ca-certificates ca-certificates:amd64 libarchive-cpio-perl shared-mime-info xdg-user-dirs shared-mime-info:amd64 xdg-user-dirs:amd64 libgpg-error-l10n libgpg-error-l10n:amd64 krb5-locales krb5-locales:amd64 libldap-common libldap-common:amd64 libgpm2:amd64 libgpm2 libpng-tools:amd64 publicsuffix publicsuffix:amd64 raptor2-utils:amd64 rasqal-utils:amd64 redland-utils:amd64 libsasl2-modules libsasl2-modules:amd64 libtasn1-doc:amd64 libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults libprotobuf-dev python3-bs4 python3-cssselect python3-html5lib qemu-user-binfmt The following NEW packages will be installed: autoconf automake autopoint autotools-dev bc binutils-x86-64-linux-gnu bison bsdextrautils cmake cmake-data comerr-dev:amd64 cpp-14-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-exe-wrapper:amd64 crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man docbook-xml docbook-xsl dwz elfutils fakeroot file flex fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-x86-64-linux-gnu g++-x86-64-linux-gnu gawk gcc-14-base:amd64 gcc-14-cross-base gcc-14-x86-64-linux-gnu gcc-14-x86-64-linux-gnu-base gcc-x86-64-linux-gnu gettext gettext-base girepository-tools girepository-tools:amd64 groff-base gtk-doc-tools help2man intltool-debian jq krb5-multidev:amd64 libarchive-zip-perl libarchive13t64 libasan8:amd64 libasan8-amd64-cross libasm1t64 libatomic1:amd64 libatomic1-amd64-cross libbackward-cpp-dev libblkid-dev:amd64 libblkid1:amd64 libboost-program-options-dev:amd64 libboost-program-options1.83-dev:amd64 libboost-program-options1.83.0:amd64 libboost1.83-dev:amd64 libbrotli-dev:amd64 libbrotli1 libbrotli1:amd64 libbz2-1.0:amd64 libbz2-dev:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcairo-gobject2:amd64 libcairo-script-interpreter2:amd64 libcairo2:amd64 libcairo2-dev:amd64 libcom-err2 libcom-err2:amd64 libcrypt-dev:amd64 libcrypt1:amd64 libcurl3t64-gnutls libcurl3t64-gnutls:amd64 libcurl4-gnutls-dev:amd64 libcurl4t64 libcurl4t64:amd64 libdb5.3t64:amd64 libdebhelper-perl libdebuginfod-common libdebuginfod1t64 libdeflate-dev:amd64 libdeflate0:amd64 libdisorder-dev:amd64 libdisorder0:amd64 libdivsufsort-dev:amd64 libdivsufsort3:amd64 libdw-dev:amd64 libdw1t64 libdw1t64:amd64 libelf-dev:amd64 libelf1t64 libelf1t64:amd64 libevent-2.1-7t64:amd64 libexpat1 libexpat1:amd64 libexpat1-dev:amd64 libfakeroot libfastahack-dev:amd64 libfastahack0:amd64 libffi-dev:amd64 libffi8 libffi8:amd64 libfile-stripnondeterminism-perl libfml-dev:amd64 libfml0:amd64 libfontconfig-dev:amd64 libfontconfig1:amd64 libfreetype-dev:amd64 libfreetype6:amd64 libgcc-14-dev:amd64 libgcc-14-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgcrypt20 libgcrypt20:amd64 libgio-2.0-dev:amd64 libgio-2.0-dev-bin libgirepository-2.0-0 libgirepository-2.0-0:amd64 libglib2.0-0t64 libglib2.0-0t64:amd64 libglib2.0-bin libglib2.0-data libglib2.0-dev:amd64 libglib2.0-dev-bin libgmp-dev:amd64 libgmp10:amd64 libgmpxx4ldbl:amd64 libgnutls-dane0t64:amd64 libgnutls-openssl27t64:amd64 libgnutls28-dev:amd64 libgnutls30t64 libgnutls30t64:amd64 libgomp1:amd64 libgomp1-amd64-cross libgpg-error0 libgpg-error0:amd64 libgssapi-krb5-2 libgssapi-krb5-2:amd64 libgssrpc4t64:amd64 libhogweed6t64:amd64 libhts-dev:amd64 libhts3t64:amd64 libhtscodecs2:amd64 libhwasan0:amd64 libhwasan0-amd64-cross libice-dev:amd64 libice6:amd64 libicu76:amd64 libidn2-0 libidn2-0:amd64 libidn2-dev:amd64 libitm1:amd64 libitm1-amd64-cross libjansson-dev:amd64 libjansson4:amd64 libjemalloc-dev:amd64 libjemalloc2:amd64 libjq1 libjson-c5 libjsoncpp26 libk5crypto3 libk5crypto3:amd64 libkadm5clnt-mit12:amd64 libkadm5srv-mit12:amd64 libkdb5-10t64:amd64 libkeyutils1 libkeyutils1:amd64 libkrb5-3 libkrb5-3:amd64 libkrb5-dev:amd64 libkrb5support0 libkrb5support0:amd64 libldap-dev:amd64 libldap2 libldap2:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libltdl7:amd64 liblz4-1:amd64 liblz4-dev:amd64 liblzma-dev:amd64 liblzma5:amd64 liblzo2-2:amd64 libmagic-mgc libmagic1t64 libmhash2:amd64 libmount-dev:amd64 libmount1:amd64 libncurses-dev:amd64 libncurses6:amd64 libncursesw6 libncursesw6:amd64 libnettle8t64:amd64 libnghttp2-14 libnghttp2-14:amd64 libnghttp2-dev:amd64 libnghttp3-9 libnghttp3-9:amd64 libnghttp3-dev:amd64 libngtcp2-16 libngtcp2-16:amd64 libngtcp2-crypto-gnutls-dev:amd64 libngtcp2-crypto-gnutls8 libngtcp2-crypto-gnutls8:amd64 libngtcp2-dev:amd64 libonig5 libosp5 libp11-kit-dev:amd64 libp11-kit0 libp11-kit0:amd64 libpcre2-16-0:amd64 libpcre2-32-0:amd64 libpcre2-8-0:amd64 libpcre2-dev:amd64 libpcre2-posix3:amd64 libpipeline1 libpixman-1-0:amd64 libpixman-1-dev:amd64 libpkgconf3 libpng-dev:amd64 libpng16-16t64:amd64 libproc2-0 libprotobuf-dev:amd64 libprotobuf-lite32t64:amd64 libprotobuf32t64 libprotobuf32t64:amd64 libprotoc-dev:amd64 libprotoc32t64 libprotoc32t64:amd64 libpsl-dev:amd64 libpsl5t64 libpsl5t64:amd64 libpython3-stdlib libpython3.13-minimal libpython3.13-stdlib libquadmath0:amd64 libquadmath0-amd64-cross libraptor2-0:amd64 libraptor2-dev:amd64 librasqal3-dev:amd64 librasqal3t64:amd64 librdf0-dev:amd64 librdf0t64:amd64 libreadline8t64 librhash1 librtmp-dev:amd64 librtmp1 librtmp1:amd64 libsasl2-2 libsasl2-2:amd64 libsasl2-modules-db libsasl2-modules-db:amd64 libselinux1:amd64 libselinux1-dev:amd64 libsepol-dev:amd64 libsepol2:amd64 libsimde-dev libsm-dev:amd64 libsm6:amd64 libsmithwaterman-dev:amd64 libsmithwaterman0:amd64 libsparsehash-dev libssh2-1-dev:amd64 libssh2-1t64 libssh2-1t64:amd64 libssl-dev:amd64 libssl3t64:amd64 libssw-dev:amd64 libssw0:amd64 libstdc++-14-dev:amd64 libstdc++-14-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsysprof-capture-4-dev:amd64 libtabixpp-dev:amd64 libtabixpp0t64:amd64 libtasn1-6 libtasn1-6:amd64 libtasn1-6-dev:amd64 libtext-charwidth-perl libtext-wrapi18n-perl libtinfo6:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libtsl-hopscotch-map-dev libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libunbound8:amd64 libunistring5 libunistring5:amd64 libuuid1:amd64 libuv1t64 libvcflib-dev:amd64 libvcflib2:amd64 libwfa2-0:amd64 libwfa2-dev:amd64 libx11-6:amd64 libx11-data libx11-dev:amd64 libxau-dev:amd64 libxau6:amd64 libxcb-render0:amd64 libxcb-render0-dev:amd64 libxcb-shm0:amd64 libxcb-shm0-dev:amd64 libxcb1:amd64 libxcb1-dev:amd64 libxdmcp-dev:amd64 libxdmcp6:amd64 libxext-dev:amd64 libxext6:amd64 libxml2 libxml2:amd64 libxml2-dev:amd64 libxrender-dev:amd64 libxrender1:amd64 libxslt1-dev:amd64 libxslt1.1 libxslt1.1:amd64 libxxhash-dev:amd64 libxxhash0:amd64 libyajl-dev:amd64 libyajl2:amd64 libzstd-dev:amd64 libzstd1:amd64 linux-libc-dev-amd64-cross m4 man-db media-types native-architecture netbase nettle-dev:amd64 opensp pkgconf pkgconf:amd64 pkgconf-bin po-debconf procps protobuf-compiler python3 python3-lxml python3-minimal python3-packaging python3-pygments python3.13 python3.13-minimal qemu-user rapidjson-dev readline-common rs sbuild-build-depends-main-dummy:amd64 sensible-utils sgml-base sgml-data tzdata ucf unzip uuid-dev:amd64 x11-common x11proto-dev xml-core xorg-sgml-doctools xsltproc xtrans-dev zlib1g:amd64 zlib1g-dev:amd64 0 upgraded, 378 newly installed, 0 to remove and 0 not upgraded. Need to get 277 MB of archives. After this operation, 1467 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1216 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 flex arm64 2.6.4-8.2+b4 [412 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 gawk arm64 1:5.3.2-1 [731 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get:8 http://mirror.einval.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:9 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.5+20250216-2 [124 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-8 [63.0 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 procps arm64 2:4.0.4-8 [873 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0052 [43.3 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libdebuginfod-common all 0.192-4 [23.7 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.5-2 [856 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.5-2 [2003 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 python3-minimal arm64 3.13.5-1 [27.2 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 media-types all 13.0.0 [29.3 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 tzdata all 2025b-4 [260 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.5-2 [1892 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 python3.13 arm64 3.13.5-2 [757 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.5-1 [10.2 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 python3 arm64 3.13.5-1 [28.2 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2 [241 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.41-5 [93.8 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 bc arm64 1.07.1-4+b1 [101 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 bison arm64 2:3.8.2+dfsg-1+b2 [1149 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 cmake-data all 3.31.6-2 [2268 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-1 [629 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-3 [323 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b1 [24.9 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get:51 http://mirror.einval.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1 [71.4 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libcurl4t64 arm64 8.14.1-2 [359 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 cmake arm64 3.31.6-2 [9906 kB] Get:71 http://mirror.einval.org/debian unstable/main amd64 gcc-14-base amd64 14.2.0-19 [49.4 kB] Get:72 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 14.2.0-19 [72.8 kB] Get:73 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.41-9 [2851 kB] Get:74 http://mirror.einval.org/debian unstable/main amd64 libcrypt1 amd64 1:4.4.38-1 [90.1 kB] Get:75 http://mirror.einval.org/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.38-1 [119 kB] Get:76 http://mirror.einval.org/debian unstable/main amd64 libc6-dev amd64 2.41-9 [1989 kB] Get:77 http://mirror.einval.org/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b1 [25.0 kB] Get:78 http://mirror.einval.org/debian unstable/main amd64 comerr-dev amd64 2.1-1.47.2-3+b1 [56.7 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 gcc-14-x86-64-linux-gnu-base arm64 14.2.0-19cross1 [49.6 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 cpp-14-x86-64-linux-gnu arm64 14.2.0-19cross1 [10.4 MB] Get:81 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:14.2.0-1 [4852 B] Get:82 http://mirror.einval.org/debian unstable/main arm64 qemu-user arm64 1:10.0.2+ds-1 [64.1 MB] Get:83 http://mirror.einval.org/debian unstable/main amd64 cross-exe-wrapper amd64 0.2.6 [6660 B] Get:84 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.44-3 [1483 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 gcc-14-cross-base all 14.2.0-19cross1 [44.9 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 14.2.0-19cross1 [72.8 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 14.2.0-19cross1 [129 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 14.2.0-19cross1 [25.4 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 14.2.0-19cross1 [8972 B] Get:90 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 14.2.0-19cross1 [2713 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 14.2.0-19cross1 [1203 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libtsan2-amd64-cross all 14.2.0-19cross1 [2448 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 libc6-amd64-cross all 2.41-8cross1 [1559 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-amd64-cross all 14.2.0-19cross1 [665 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libubsan1-amd64-cross all 14.2.0-19cross1 [1073 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libhwasan0-amd64-cross all 14.2.0-19cross1 [1484 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-amd64-cross all 14.2.0-19cross1 [145 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libgcc-14-dev-amd64-cross all 14.2.0-19cross1 [2665 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 gcc-14-x86-64-linux-gnu arm64 14.2.0-19cross1 [20.0 MB] Get:100 http://mirror.einval.org/debian unstable/main arm64 gcc-x86-64-linux-gnu arm64 4:14.2.0-1 [1448 B] Get:101 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-amd64-cross all 6.12.29-1cross1 [2421 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-amd64-cross all 2.41-8cross1 [1986 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libstdc++-14-dev-amd64-cross all 14.2.0-19cross1 [2354 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 g++-14-x86-64-linux-gnu arm64 14.2.0-19cross1 [11.2 MB] Get:105 http://mirror.einval.org/debian unstable/main arm64 g++-x86-64-linux-gnu arm64 4:14.2.0-1 [1204 B] Get:106 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.12 [3552 B] Get:107 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:113 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.23.1-2 [1611 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 sgml-base all 1.31+nmu1 [10.9 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 sgml-data all 2.0.11+nmu1 [179 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 docbook all 4.5-11 [126 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 libosp5 arm64 1.5.2-15.2 [922 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 opensp arm64 1.5.2-15.2 [442 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 docbook-to-man arm64 1:2.0.0-48 [71.1 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 docbook-xml all 4.5-13 [77.4 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 docbook-xsl all 1.79.2+dfsg-7 [1221 kB] Get:128 http://mirror.einval.org/debian unstable/main arm64 libdw1t64 arm64 0.192-4 [237 kB] Get:129 http://mirror.einval.org/debian unstable/main arm64 libasm1t64 arm64 0.192-4 [28.2 kB] Get:130 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB] Get:131 http://mirror.einval.org/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB] Get:132 http://mirror.einval.org/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.14.1-2 [353 kB] Get:133 http://mirror.einval.org/debian unstable/main arm64 libjson-c5 arm64 0.18+ds-1 [45.2 kB] Get:134 http://mirror.einval.org/debian unstable/main arm64 libdebuginfod1t64 arm64 0.192-4 [31.3 kB] Get:135 http://mirror.einval.org/debian unstable/main arm64 elfutils arm64 0.192-4 [464 kB] Get:136 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.37.1.2-1 [29.7 kB] Get:137 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.37.1.2-1 [75.4 kB] Get:138 http://mirror.einval.org/debian unstable/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:139 http://mirror.einval.org/debian unstable/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get:140 http://mirror.einval.org/debian unstable/main arm64 fontconfig-config arm64 2.15.0-2.3 [318 kB] Get:141 http://mirror.einval.org/debian unstable/main arm64 native-architecture all 0.2.6 [2264 B] Get:142 http://mirror.einval.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.84.3-1 [1426 kB] Get:143 http://mirror.einval.org/debian unstable/main arm64 libgirepository-2.0-0 arm64 2.84.3-1 [133 kB] Get:144 http://mirror.einval.org/debian unstable/main arm64 girepository-tools arm64 2.84.3-1 [138 kB] Get:145 http://mirror.einval.org/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB] Get:146 http://mirror.einval.org/debian unstable/main amd64 libatomic1 amd64 14.2.0-19 [9308 B] Get:147 http://mirror.einval.org/debian unstable/main amd64 libblkid1 amd64 2.41-5 [171 kB] Get:148 http://mirror.einval.org/debian unstable/main amd64 libpcre2-8-0 amd64 10.45-1 [298 kB] Get:149 http://mirror.einval.org/debian unstable/main amd64 libselinux1 amd64 3.8.1-1 [84.7 kB] Get:150 http://mirror.einval.org/debian unstable/main amd64 libmount1 amd64 2.41-5 [209 kB] Get:151 http://mirror.einval.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] Get:152 http://mirror.einval.org/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.3-1 [1515 kB] Get:153 http://mirror.einval.org/debian unstable/main amd64 libgirepository-2.0-0 amd64 2.84.3-1 [142 kB] Get:154 http://mirror.einval.org/debian unstable/main amd64 girepository-tools amd64 2.84.3-1 [149 kB] Get:155 http://mirror.einval.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get:156 http://mirror.einval.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get:157 http://mirror.einval.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get:158 http://mirror.einval.org/debian unstable/main arm64 libgpg-error0 arm64 1.51-4 [78.5 kB] Get:159 http://mirror.einval.org/debian unstable/main arm64 libgcrypt20 arm64 1.11.0-7 [742 kB] Get:160 http://mirror.einval.org/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1.2 [221 kB] Get:161 http://mirror.einval.org/debian unstable/main arm64 python3-lxml arm64 5.4.0-1 [1139 kB] Get:162 http://mirror.einval.org/debian unstable/main arm64 python3-pygments all 2.18.0+dfsg-2 [836 kB] Get:163 http://mirror.einval.org/debian unstable/main arm64 xsltproc arm64 1.1.35-1.2 [115 kB] Get:164 http://mirror.einval.org/debian unstable/main arm64 gtk-doc-tools all 1.34.0-2 [328 kB] Get:165 http://mirror.einval.org/debian unstable/main arm64 help2man arm64 1.49.3+b1 [198 kB] Get:166 http://mirror.einval.org/debian unstable/main arm64 libonig5 arm64 6.9.9-1+b1 [181 kB] Get:167 http://mirror.einval.org/debian unstable/main arm64 libjq1 arm64 1.8.0-1 [151 kB] Get:168 http://mirror.einval.org/debian unstable/main arm64 jq arm64 1.8.0-1 [84.0 kB] Get:169 http://mirror.einval.org/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB] Get:170 http://mirror.einval.org/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB] Get:171 http://mirror.einval.org/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B] Get:172 http://mirror.einval.org/debian unstable/main amd64 libzstd1 amd64 1.5.7+dfsg-1 [304 kB] Get:173 http://mirror.einval.org/debian unstable/main amd64 libssl3t64 amd64 3.5.0-2 [2433 kB] Get:174 http://mirror.einval.org/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB] Get:175 http://mirror.einval.org/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB] Get:176 http://mirror.einval.org/debian unstable/main amd64 libgssrpc4t64 amd64 1.21.3-5 [60.0 kB] Get:177 http://mirror.einval.org/debian unstable/main amd64 libkadm5clnt-mit12 amd64 1.21.3-5 [42.5 kB] Get:178 http://mirror.einval.org/debian unstable/main amd64 libkdb5-10t64 amd64 1.21.3-5 [42.6 kB] Get:179 http://mirror.einval.org/debian unstable/main amd64 libkadm5srv-mit12 amd64 1.21.3-5 [54.2 kB] Get:180 http://mirror.einval.org/debian unstable/main amd64 krb5-multidev amd64 1.21.3-5 [126 kB] Get:181 http://mirror.einval.org/debian unstable/main amd64 libasan8 amd64 14.2.0-19 [2725 kB] Get:182 http://mirror.einval.org/debian unstable/main arm64 libbackward-cpp-dev all 1.6-1 [34.3 kB] Get:183 http://mirror.einval.org/debian unstable/main amd64 libuuid1 amd64 2.41-5 [37.6 kB] Get:184 http://mirror.einval.org/debian unstable/main amd64 uuid-dev amd64 2.41-5 [48.8 kB] Get:185 http://mirror.einval.org/debian unstable/main amd64 libblkid-dev amd64 2.41-5 [208 kB] Get:186 http://mirror.einval.org/debian unstable/main amd64 libgomp1 amd64 14.2.0-19 [137 kB] Get:187 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 14.2.0-19 [26.0 kB] Get:188 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 14.2.0-19 [1204 kB] Get:189 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 14.2.0-19 [2460 kB] Get:190 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 14.2.0-19 [714 kB] Get:191 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 14.2.0-19 [1074 kB] Get:192 http://mirror.einval.org/debian unstable/main amd64 libhwasan0 amd64 14.2.0-19 [1488 kB] Get:193 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 14.2.0-19 [145 kB] Get:194 http://mirror.einval.org/debian unstable/main amd64 libgcc-14-dev amd64 14.2.0-19 [2672 kB] Get:195 http://mirror.einval.org/debian unstable/main amd64 libstdc++-14-dev amd64 14.2.0-19 [2376 kB] Get:196 http://mirror.einval.org/debian unstable/main amd64 libboost1.83-dev amd64 1.83.0-4.2 [10.6 MB] Get:197 http://mirror.einval.org/debian unstable/main amd64 libboost-program-options1.83.0 amd64 1.83.0-4.2 [347 kB] Get:198 http://mirror.einval.org/debian unstable/main amd64 libboost-program-options1.83-dev amd64 1.83.0-4.2 [375 kB] Get:199 http://mirror.einval.org/debian unstable/main amd64 libboost-program-options-dev amd64 1.83.0.2+b2 [3612 B] Get:200 http://mirror.einval.org/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:201 http://mirror.einval.org/debian unstable/main amd64 libbrotli-dev amd64 1.1.0-2+b7 [316 kB] Get:202 http://mirror.einval.org/debian unstable/main amd64 libbz2-1.0 amd64 1.0.8-6 [37.9 kB] Get:203 http://mirror.einval.org/debian unstable/main amd64 libbz2-dev amd64 1.0.8-6 [31.4 kB] Get:204 http://mirror.einval.org/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB] Get:205 http://mirror.einval.org/debian unstable/main amd64 libpng16-16t64 amd64 1.6.48-1 [282 kB] Get:206 http://mirror.einval.org/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:207 http://mirror.einval.org/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB] Get:208 http://mirror.einval.org/debian unstable/main amd64 libpixman-1-0 amd64 0.44.0-3 [248 kB] Get:209 http://mirror.einval.org/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB] Get:210 http://mirror.einval.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB] Get:211 http://mirror.einval.org/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB] Get:212 http://mirror.einval.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get:213 http://mirror.einval.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB] Get:214 http://mirror.einval.org/debian unstable/main amd64 libxcb-render0 amd64 1.17.0-2+b1 [115 kB] Get:215 http://mirror.einval.org/debian unstable/main amd64 libxcb-shm0 amd64 1.17.0-2+b1 [105 kB] Get:216 http://mirror.einval.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b3 [50.4 kB] Get:217 http://mirror.einval.org/debian unstable/main amd64 libxrender1 amd64 1:0.9.12-1 [27.9 kB] Get:218 http://mirror.einval.org/debian unstable/main amd64 libcairo2 amd64 1.18.4-1+b1 [538 kB] Get:219 http://mirror.einval.org/debian unstable/main amd64 libcairo-gobject2 amd64 1.18.4-1+b1 [130 kB] Get:220 http://mirror.einval.org/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB] Get:221 http://mirror.einval.org/debian unstable/main amd64 libcairo-script-interpreter2 amd64 1.18.4-1+b1 [59.3 kB] Get:222 http://mirror.einval.org/debian unstable/main amd64 libexpat1-dev amd64 2.7.1-1 [161 kB] Get:223 http://mirror.einval.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg+really1.3.1-1+b1 [920 kB] Get:224 http://mirror.einval.org/debian unstable/main amd64 libpng-dev amd64 1.6.48-1 [366 kB] Get:225 http://mirror.einval.org/debian unstable/main amd64 libfreetype-dev amd64 2.13.3+dfsg-1 [622 kB] Get:226 http://mirror.einval.org/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get:227 http://mirror.einval.org/debian unstable/main amd64 libfontconfig-dev amd64 2.15.0-2.3 [414 kB] Get:228 http://mirror.einval.org/debian unstable/main amd64 libffi-dev amd64 3.4.8-2 [61.1 kB] Get:229 http://mirror.einval.org/debian unstable/main amd64 libsepol2 amd64 3.8.1-1 [296 kB] Get:230 http://mirror.einval.org/debian unstable/main amd64 libsepol-dev amd64 3.8.1-1 [373 kB] Get:231 http://mirror.einval.org/debian unstable/main amd64 libpcre2-16-0 amd64 10.45-1 [281 kB] Get:232 http://mirror.einval.org/debian unstable/main amd64 libpcre2-32-0 amd64 10.45-1 [268 kB] Get:233 http://mirror.einval.org/debian unstable/main amd64 libpcre2-posix3 amd64 10.45-1 [63.5 kB] Get:234 http://mirror.einval.org/debian unstable/main amd64 libpcre2-dev amd64 10.45-1 [853 kB] Get:235 http://mirror.einval.org/debian unstable/main amd64 libselinux1-dev amd64 3.8.1-1 [169 kB] Get:236 http://mirror.einval.org/debian unstable/main amd64 libmount-dev amd64 2.41-5 [30.5 kB] Get:237 http://mirror.einval.org/debian unstable/main amd64 libsysprof-capture-4-dev amd64 48.0-2 [49.9 kB] Get:238 http://mirror.einval.org/debian unstable/main amd64 libgio-2.0-dev amd64 2.84.3-1 [1685 kB] Get:239 http://mirror.einval.org/debian unstable/main arm64 libglib2.0-data all 2.84.3-1 [1285 kB] Get:240 http://mirror.einval.org/debian unstable/main arm64 libglib2.0-bin arm64 2.84.3-1 [125 kB] Get:241 http://mirror.einval.org/debian unstable/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get:242 http://mirror.einval.org/debian unstable/main arm64 libgio-2.0-dev-bin arm64 2.84.3-1 [164 kB] Get:243 http://mirror.einval.org/debian unstable/main arm64 libglib2.0-dev-bin arm64 2.84.3-1 [53.8 kB] Get:244 http://mirror.einval.org/debian unstable/main amd64 libglib2.0-dev amd64 2.84.3-1 [54.5 kB] Get:245 http://mirror.einval.org/debian unstable/main amd64 libpixman-1-dev amd64 0.44.0-3 [11.4 kB] Get:246 http://mirror.einval.org/debian unstable/main arm64 x11-common all 1:7.7+24 [217 kB] Get:247 http://mirror.einval.org/debian unstable/main amd64 libice6 amd64 2:1.1.1-1 [65.4 kB] Get:248 http://mirror.einval.org/debian unstable/main amd64 libsm6 amd64 2:1.2.6-1 [37.3 kB] Get:249 http://mirror.einval.org/debian unstable/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:250 http://mirror.einval.org/debian unstable/main arm64 x11proto-dev all 2024.1-1 [603 kB] Get:251 http://mirror.einval.org/debian unstable/main amd64 libice-dev amd64 2:1.1.1-1 [73.8 kB] Get:252 http://mirror.einval.org/debian unstable/main amd64 libsm-dev amd64 2:1.2.6-1 [39.7 kB] Get:253 http://mirror.einval.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB] Get:254 http://mirror.einval.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB] Get:255 http://mirror.einval.org/debian unstable/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:256 http://mirror.einval.org/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB] Get:257 http://mirror.einval.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.12-1 [894 kB] Get:258 http://mirror.einval.org/debian unstable/main amd64 libxcb-render0-dev amd64 1.17.0-2+b1 [118 kB] Get:259 http://mirror.einval.org/debian unstable/main amd64 libxcb-shm0-dev amd64 1.17.0-2+b1 [108 kB] Get:260 http://mirror.einval.org/debian unstable/main amd64 libxext-dev amd64 2:1.3.4-1+b3 [104 kB] Get:261 http://mirror.einval.org/debian unstable/main amd64 libxrender-dev amd64 1:0.9.12-1 [39.0 kB] Get:262 http://mirror.einval.org/debian unstable/main amd64 libcairo2-dev amd64 1.18.4-1+b1 [43.4 kB] Get:263 http://mirror.einval.org/debian unstable/main amd64 libgmp10 amd64 2:6.3.0+dfsg-3 [560 kB] Get:264 http://mirror.einval.org/debian unstable/main amd64 libnettle8t64 amd64 3.10.1-1 [305 kB] Get:265 http://mirror.einval.org/debian unstable/main amd64 libhogweed6t64 amd64 3.10.1-1 [335 kB] Get:266 http://mirror.einval.org/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:267 http://mirror.einval.org/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB] Get:268 http://mirror.einval.org/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB] Get:269 http://mirror.einval.org/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB] Get:270 http://mirror.einval.org/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB] Get:271 http://mirror.einval.org/debian unstable/main amd64 libdb5.3t64 amd64 5.3.28+dfsg2-9 [704 kB] Get:272 http://mirror.einval.org/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB] Get:273 http://mirror.einval.org/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB] Get:274 http://mirror.einval.org/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB] Get:275 http://mirror.einval.org/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB] Get:276 http://mirror.einval.org/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB] Get:277 http://mirror.einval.org/debian unstable/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB] Get:278 http://mirror.einval.org/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB] Get:279 http://mirror.einval.org/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:280 http://mirror.einval.org/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:281 http://mirror.einval.org/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:282 http://mirror.einval.org/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.14.1-2 [384 kB] Get:283 http://mirror.einval.org/debian unstable/main amd64 libevent-2.1-7t64 amd64 2.1.12-stable-10+b1 [182 kB] Get:284 http://mirror.einval.org/debian unstable/main amd64 libunbound8 amd64 1.22.0-1+b1 [598 kB] Get:285 http://mirror.einval.org/debian unstable/main amd64 libgnutls-dane0t64 amd64 3.8.9-2 [455 kB] Get:286 http://mirror.einval.org/debian unstable/main amd64 libgnutls-openssl27t64 amd64 3.8.9-2 [455 kB] Get:287 http://mirror.einval.org/debian unstable/main amd64 libidn2-dev amd64 2.3.8-2 [103 kB] Get:288 http://mirror.einval.org/debian unstable/main amd64 libp11-kit-dev amd64 0.25.5-3 [208 kB] Get:289 http://mirror.einval.org/debian unstable/main amd64 libtasn1-6-dev amd64 4.20.0-2 [99.2 kB] Get:290 http://mirror.einval.org/debian unstable/main amd64 libgmpxx4ldbl amd64 2:6.3.0+dfsg-3 [329 kB] Get:291 http://mirror.einval.org/debian unstable/main amd64 libgmp-dev amd64 2:6.3.0+dfsg-3 [642 kB] Get:292 http://mirror.einval.org/debian unstable/main amd64 nettle-dev amd64 3.10.1-1 [1318 kB] Get:293 http://mirror.einval.org/debian unstable/main amd64 libgnutls28-dev amd64 3.8.9-2 [1401 kB] Get:294 http://mirror.einval.org/debian unstable/main amd64 libkrb5-dev amd64 1.21.3-5 [16.1 kB] Get:295 http://mirror.einval.org/debian unstable/main amd64 libldap-dev amd64 2.6.10+dfsg-1 [312 kB] Get:296 http://mirror.einval.org/debian unstable/main amd64 libnghttp2-dev amd64 1.64.0-1.1 [116 kB] Get:297 http://mirror.einval.org/debian unstable/main amd64 libnghttp3-dev amd64 1.8.0-1 [91.3 kB] Get:298 http://mirror.einval.org/debian unstable/main amd64 libngtcp2-crypto-gnutls-dev amd64 1.11.0-1 [34.0 kB] Get:299 http://mirror.einval.org/debian unstable/main amd64 libngtcp2-dev amd64 1.11.0-1 [179 kB] Get:300 http://mirror.einval.org/debian unstable/main amd64 libpsl-dev amd64 0.21.2-1.1+b1 [77.6 kB] Get:301 http://mirror.einval.org/debian unstable/main amd64 librtmp-dev amd64 2.4+20151223.gitfa8646d.1-2+b5 [68.0 kB] Get:302 http://mirror.einval.org/debian unstable/main amd64 libssl-dev amd64 3.5.0-2 [2950 kB] Get:303 http://mirror.einval.org/debian unstable/main amd64 libssh2-1-dev amd64 1.11.1-1 [393 kB] Get:304 http://mirror.einval.org/debian unstable/main amd64 libzstd-dev amd64 1.5.7+dfsg-1 [371 kB] Get:305 http://mirror.einval.org/debian unstable/main amd64 libcurl4-gnutls-dev amd64 8.14.1-2 [503 kB] Get:306 http://mirror.einval.org/debian unstable/main amd64 libcurl4t64 amd64 8.14.1-2 [391 kB] Get:307 http://mirror.einval.org/debian unstable/main amd64 libdeflate0 amd64 1.23-2 [47.3 kB] Get:308 http://mirror.einval.org/debian unstable/main amd64 libdeflate-dev amd64 1.23-2 [55.9 kB] Get:309 http://mirror.einval.org/debian unstable/main amd64 libdisorder0 amd64 0.0.2+git20130809.8062ee1-4+b2 [4908 B] Get:310 http://mirror.einval.org/debian unstable/main amd64 libdisorder-dev amd64 0.0.2+git20130809.8062ee1-4+b2 [4912 B] Get:311 http://mirror.einval.org/debian unstable/main amd64 libdivsufsort3 amd64 2.0.1-6+b1 [45.9 kB] Get:312 http://mirror.einval.org/debian unstable/main amd64 libdivsufsort-dev amd64 2.0.1-6+b1 [19.1 kB] Get:313 http://mirror.einval.org/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:314 http://mirror.einval.org/debian unstable/main amd64 libelf-dev amd64 0.192-4 [93.2 kB] Get:315 http://mirror.einval.org/debian unstable/main amd64 liblzma5 amd64 5.8.1-1 [309 kB] Get:316 http://mirror.einval.org/debian unstable/main amd64 libdw1t64 amd64 0.192-4 [255 kB] Get:317 http://mirror.einval.org/debian unstable/main amd64 liblzma-dev amd64 5.8.1-1 [348 kB] Get:318 http://mirror.einval.org/debian unstable/main amd64 libdw-dev amd64 0.192-4 [335 kB] Get:319 http://mirror.einval.org/debian unstable/main amd64 libfastahack0 amd64 1.0.0+dfsg-11+b2 [26.4 kB] Get:320 http://mirror.einval.org/debian unstable/main amd64 libfastahack-dev amd64 1.0.0+dfsg-11+b2 [27.9 kB] Get:321 http://mirror.einval.org/debian unstable/main amd64 libfml0 amd64 0.1+git20221215.85f159e-1 [70.1 kB] Get:322 http://mirror.einval.org/debian unstable/main amd64 libfml-dev amd64 0.1+git20221215.85f159e-1 [82.0 kB] Get:323 http://mirror.einval.org/debian unstable/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB] Get:324 http://mirror.einval.org/debian unstable/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB] Get:325 http://mirror.einval.org/debian unstable/main amd64 libhtscodecs2 amd64 1.6.1-2 [95.8 kB] Get:326 http://mirror.einval.org/debian unstable/main amd64 libhts3t64 amd64 1.21+ds-1 [463 kB] Get:327 http://mirror.einval.org/debian unstable/main amd64 libhts-dev amd64 1.21+ds-1 [1733 kB] Get:328 http://mirror.einval.org/debian unstable/main amd64 libicu76 amd64 76.1-4 [9722 kB] Get:329 http://mirror.einval.org/debian unstable/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB] Get:330 http://mirror.einval.org/debian unstable/main amd64 libjansson-dev amd64 2.14-2+b3 [43.2 kB] Get:331 http://mirror.einval.org/debian unstable/main amd64 libjemalloc2 amd64 5.3.0-3 [274 kB] Get:332 http://mirror.einval.org/debian unstable/main amd64 libjemalloc-dev amd64 5.3.0-3 [490 kB] Get:333 http://mirror.einval.org/debian unstable/main amd64 libltdl7 amd64 2.5.4-4 [416 kB] Get:334 http://mirror.einval.org/debian unstable/main amd64 libxxhash0 amd64 0.8.3-2 [27.1 kB] Get:335 http://mirror.einval.org/debian unstable/main amd64 liblz4-1 amd64 1.10.0-4 [63.9 kB] Get:336 http://mirror.einval.org/debian unstable/main amd64 libxxhash-dev amd64 0.8.3-2 [81.0 kB] Get:337 http://mirror.einval.org/debian unstable/main amd64 liblz4-dev amd64 1.10.0-4 [88.4 kB] Get:338 http://mirror.einval.org/debian unstable/main amd64 libmhash2 amd64 0.9.9.9-10 [92.4 kB] Get:339 http://mirror.einval.org/debian unstable/main amd64 libtinfo6 amd64 6.5+20250216-2 [348 kB] Get:340 http://mirror.einval.org/debian unstable/main amd64 libncurses6 amd64 6.5+20250216-2 [105 kB] Get:341 http://mirror.einval.org/debian unstable/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:342 http://mirror.einval.org/debian unstable/main amd64 libncurses-dev amd64 6.5+20250216-2 [353 kB] Get:343 http://mirror.einval.org/debian unstable/main amd64 libprotobuf32t64 amd64 3.21.12-11 [983 kB] Get:344 http://mirror.einval.org/debian unstable/main amd64 libprotobuf-lite32t64 amd64 3.21.12-11 [274 kB] Get:345 http://mirror.einval.org/debian unstable/main amd64 libprotobuf-dev amd64 3.21.12-11 [1328 kB] Get:346 http://mirror.einval.org/debian unstable/main arm64 libprotobuf32t64 arm64 3.21.12-11 [858 kB] Get:347 http://mirror.einval.org/debian unstable/main amd64 libprotoc32t64 amd64 3.21.12-11 [922 kB] Get:348 http://mirror.einval.org/debian unstable/main amd64 libprotoc-dev amd64 3.21.12-11 [1025 kB] Get:349 http://mirror.einval.org/debian unstable/main arm64 libprotoc32t64 arm64 3.21.12-11 [790 kB] Get:350 http://mirror.einval.org/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB] Get:351 http://mirror.einval.org/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.2 [233 kB] Get:352 http://mirror.einval.org/debian unstable/main amd64 libyajl2 amd64 2.1.0-5+b2 [23.3 kB] Get:353 http://mirror.einval.org/debian unstable/main amd64 libraptor2-0 amd64 2.0.16-6 [177 kB] Get:354 http://mirror.einval.org/debian unstable/main amd64 libxml2-dev amd64 2.12.7+dfsg+really2.9.14-1 [792 kB] Get:355 http://mirror.einval.org/debian unstable/main amd64 libxslt1-dev amd64 1.1.35-1.2 [345 kB] Get:356 http://mirror.einval.org/debian unstable/main amd64 libyajl-dev amd64 2.1.0-5+b2 [32.0 kB] Get:357 http://mirror.einval.org/debian unstable/main amd64 libraptor2-dev amd64 2.0.16-6 [212 kB] Get:358 http://mirror.einval.org/debian unstable/main amd64 librasqal3t64 amd64 0.9.33-2.1+b2 [191 kB] Get:359 http://mirror.einval.org/debian unstable/main amd64 librasqal3-dev amd64 0.9.33-2.1+b2 [227 kB] Get:360 http://mirror.einval.org/debian unstable/main amd64 librdf0t64 amd64 1.0.17-4+b1 [107 kB] Get:361 http://mirror.einval.org/debian unstable/main amd64 librdf0-dev amd64 1.0.17-4+b1 [238 kB] Get:362 http://mirror.einval.org/debian unstable/main arm64 libsimde-dev all 0.8.2-3 [467 kB] Get:363 http://mirror.einval.org/debian unstable/main amd64 libsmithwaterman0 amd64 0.0+git20160702.2610e25-12+b2 [36.8 kB] Get:364 http://mirror.einval.org/debian unstable/main amd64 libsmithwaterman-dev amd64 0.0+git20160702.2610e25-12+b2 [41.4 kB] Get:365 http://mirror.einval.org/debian unstable/main arm64 libsparsehash-dev all 2.0.3-2 [76.8 kB] Get:366 http://mirror.einval.org/debian unstable/main amd64 libssw0 amd64 1.1-15+b2 [21.8 kB] Get:367 http://mirror.einval.org/debian unstable/main amd64 libssw-dev amd64 1.1-15+b2 [24.6 kB] Get:368 http://mirror.einval.org/debian unstable/main amd64 libtabixpp0t64 amd64 1.1.2-2.1+b1 [10.3 kB] Get:369 http://mirror.einval.org/debian unstable/main amd64 libtabixpp-dev amd64 1.1.2-2.1+b1 [9528 B] Get:370 http://mirror.einval.org/debian unstable/main arm64 libtsl-hopscotch-map-dev all 2.3.1-1 [36.6 kB] Get:371 http://mirror.einval.org/debian unstable/main amd64 libwfa2-0 amd64 2.3.3-4+b2 [60.9 kB] Get:372 http://mirror.einval.org/debian unstable/main amd64 libvcflib2 amd64 1.0.12+dfsg-1 [233 kB] Get:373 http://mirror.einval.org/debian unstable/main amd64 libwfa2-dev amd64 2.3.3-4+b2 [79.7 kB] Get:374 http://mirror.einval.org/debian unstable/main amd64 libvcflib-dev amd64 1.0.12+dfsg-1 [77.7 kB] Get:375 http://mirror.einval.org/debian unstable/main arm64 protobuf-compiler arm64 3.21.12-11 [84.7 kB] Get:376 http://mirror.einval.org/debian unstable/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.4 [98.1 kB] Get:377 http://mirror.einval.org/debian unstable/main arm64 rs arm64 20200313-1+b1 [15.2 kB] Get:378 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-29 [163 kB] Preconfiguring packages ... Fetched 277 MB in 3s (82.2 MB/s) Selecting previously unselected package m4. (Reading database ... 12034 files and directories currently installed.) Preparing to unpack .../archives/m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package flex. Preparing to unpack .../flex_2.6.4-8.2+b4_arm64.deb ... Unpacking flex (2.6.4-8.2+b4) ... Selecting previously unselected package readline-common. Preparing to unpack .../readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Setting up readline-common (8.2-6) ... Setting up libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package gawk. (Reading database ... 12249 files and directories currently installed.) Preparing to unpack .../00-gawk_1%3a5.3.2-1_arm64.deb ... Unpacking gawk (1:5.3.2-1) ... Selecting previously unselected package libtext-charwidth-perl:arm64. Preparing to unpack .../01-libtext-charwidth-perl_0.04-11+b4_arm64.deb ... Unpacking libtext-charwidth-perl:arm64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. Preparing to unpack .../02-libtext-wrapi18n-perl_0.06-10_all.deb ... Unpacking libtext-wrapi18n-perl (0.06-10) ... Selecting previously unselected package libncursesw6:arm64. Preparing to unpack .../03-libncursesw6_6.5+20250216-2_arm64.deb ... Unpacking libncursesw6:arm64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../04-libproc2-0_2%3a4.0.4-8_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-8) ... Selecting previously unselected package procps. Preparing to unpack .../05-procps_2%3a4.0.4-8_arm64.deb ... Unpacking procps (2:4.0.4-8) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../06-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package ucf. Preparing to unpack .../07-ucf_3.0052_all.deb ... Moving old data out of the way Unpacking ucf (3.0052) ... Selecting previously unselected package libdebuginfod-common. Preparing to unpack .../08-libdebuginfod-common_0.192-4_all.deb ... Unpacking libdebuginfod-common (0.192-4) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../09-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../10-libpython3.13-minimal_3.13.5-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.5-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../11-libexpat1_2.7.1-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../12-python3.13-minimal_3.13.5-2_arm64.deb ... Unpacking python3.13-minimal (3.13.5-2) ... Setting up libpython3.13-minimal:arm64 (3.13.5-2) ... Setting up libexpat1:arm64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 13071 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.5-1_arm64.deb ... Unpacking python3-minimal (3.13.5-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-4_all.deb ... Unpacking tzdata (2025b-4) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.4.8-2_arm64.deb ... Unpacking libffi8:arm64 (3.4.8-2) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../5-libpython3.13-stdlib_3.13.5-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../6-python3.13_3.13.5-2_arm64.deb ... Unpacking python3.13 (3.13.5-2) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../7-libpython3-stdlib_3.13.5-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... 14054 files and directories currently installed.) Preparing to unpack .../000-python3_3.13.5-1_arm64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../002-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.23.1-2_arm64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../005-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../006-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../007-bsdextrautils_2.41-5_arm64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../008-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../009-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../010-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../011-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../012-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../013-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package bc. Preparing to unpack .../014-bc_1.07.1-4+b1_arm64.deb ... Unpacking bc (1.07.1-4+b1) ... Selecting previously unselected package bison. Preparing to unpack .../015-bison_2%3a3.8.2+dfsg-1+b2_arm64.deb ... Unpacking bison (2:3.8.2+dfsg-1+b2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../016-cmake-data_3.31.6-2_all.deb ... Unpacking cmake-data (3.31.6-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../017-libxml2_2.12.7+dfsg+really2.9.14-1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-1) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../018-libarchive13t64_3.7.4-3_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-3) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../019-libbrotli1_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../020-libkrb5support0_1.21.3-5_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../021-libcom-err2_1.47.2-3+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-3+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../022-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../023-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../024-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../025-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../026-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../027-libidn2-0_2.3.8-2_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-2) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../028-libsasl2-modules-db_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../029-libsasl2-2_2.1.28+dfsg1-9_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../030-libldap2_2.6.10+dfsg-1_arm64.deb ... Unpacking libldap2:arm64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../031-libnghttp2-14_1.64.0-1.1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1.1) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../032-libnghttp3-9_1.8.0-1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.8.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../033-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../034-libp11-kit0_0.25.5-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../035-libtasn1-6_4.20.0-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../036-libgnutls30t64_3.8.9-2_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.9-2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../037-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../038-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../039-libcurl4t64_8.14.1-2_arm64.deb ... Unpacking libcurl4t64:arm64 (8.14.1-2) ... Selecting previously unselected package libjsoncpp26:arm64. Preparing to unpack .../040-libjsoncpp26_1.9.6-3_arm64.deb ... Unpacking libjsoncpp26:arm64 (1.9.6-3) ... Selecting previously unselected package librhash1:arm64. Preparing to unpack .../041-librhash1_1.4.6-1_arm64.deb ... Unpacking librhash1:arm64 (1.4.6-1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../042-libuv1t64_1.50.0-2_arm64.deb ... Unpacking libuv1t64:arm64 (1.50.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../043-cmake_3.31.6-2_arm64.deb ... Unpacking cmake (3.31.6-2) ... Selecting previously unselected package gcc-14-base:amd64. Preparing to unpack .../044-gcc-14-base_14.2.0-19_amd64.deb ... Unpacking gcc-14-base:amd64 (14.2.0-19) ... Selecting previously unselected package libgcc-s1:amd64. Preparing to unpack .../045-libgcc-s1_14.2.0-19_amd64.deb ... Unpacking libgcc-s1:amd64 (14.2.0-19) ... Selecting previously unselected package libc6:amd64. Preparing to unpack .../046-libc6_2.41-9_amd64.deb ... Unpacking libc6:amd64 (2.41-9) ... Selecting previously unselected package libcrypt1:amd64. Preparing to unpack .../047-libcrypt1_1%3a4.4.38-1_amd64.deb ... Unpacking libcrypt1:amd64 (1:4.4.38-1) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../048-libcrypt-dev_1%3a4.4.38-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.38-1) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../049-libc6-dev_2.41-9_amd64.deb ... Unpacking libc6-dev:amd64 (2.41-9) ... Selecting previously unselected package libcom-err2:amd64. Preparing to unpack .../050-libcom-err2_1.47.2-3+b1_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2-3+b1) ... Selecting previously unselected package comerr-dev:amd64. Preparing to unpack .../051-comerr-dev_2.1-1.47.2-3+b1_amd64.deb ... Unpacking comerr-dev:amd64 (2.1-1.47.2-3+b1) ... Selecting previously unselected package gcc-14-x86-64-linux-gnu-base:arm64. Preparing to unpack .../052-gcc-14-x86-64-linux-gnu-base_14.2.0-19cross1_arm64.deb ... Unpacking gcc-14-x86-64-linux-gnu-base:arm64 (14.2.0-19cross1) ... Selecting previously unselected package cpp-14-x86-64-linux-gnu. Preparing to unpack .../053-cpp-14-x86-64-linux-gnu_14.2.0-19cross1_arm64.deb ... Unpacking cpp-14-x86-64-linux-gnu (14.2.0-19cross1) ... Selecting previously unselected package cpp-x86-64-linux-gnu. Preparing to unpack .../054-cpp-x86-64-linux-gnu_4%3a14.2.0-1_arm64.deb ... Unpacking cpp-x86-64-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package qemu-user. Preparing to unpack .../055-qemu-user_1%3a10.0.2+ds-1_arm64.deb ... Unpacking qemu-user (1:10.0.2+ds-1) ... Selecting previously unselected package cross-exe-wrapper:amd64. Preparing to unpack .../056-cross-exe-wrapper_0.2.6_amd64.deb ... Unpacking cross-exe-wrapper:amd64 (0.2.6) ... Selecting previously unselected package binutils-x86-64-linux-gnu. Preparing to unpack .../057-binutils-x86-64-linux-gnu_2.44-3_arm64.deb ... Unpacking binutils-x86-64-linux-gnu (2.44-3) ... Selecting previously unselected package gcc-14-cross-base. Preparing to unpack .../058-gcc-14-cross-base_14.2.0-19cross1_all.deb ... Unpacking gcc-14-cross-base (14.2.0-19cross1) ... Selecting previously unselected package libgcc-s1-amd64-cross. Preparing to unpack .../059-libgcc-s1-amd64-cross_14.2.0-19cross1_all.deb ... Unpacking libgcc-s1-amd64-cross (14.2.0-19cross1) ... Selecting previously unselected package libgomp1-amd64-cross. Preparing to unpack .../060-libgomp1-amd64-cross_14.2.0-19cross1_all.deb ... Unpacking libgomp1-amd64-cross (14.2.0-19cross1) ... Selecting previously unselected package libitm1-amd64-cross. Preparing to unpack .../061-libitm1-amd64-cross_14.2.0-19cross1_all.deb ... Unpacking libitm1-amd64-cross (14.2.0-19cross1) ... Selecting previously unselected package libatomic1-amd64-cross. Preparing to unpack .../062-libatomic1-amd64-cross_14.2.0-19cross1_all.deb ... Unpacking libatomic1-amd64-cross (14.2.0-19cross1) ... Selecting previously unselected package libasan8-amd64-cross. Preparing to unpack .../063-libasan8-amd64-cross_14.2.0-19cross1_all.deb ... Unpacking libasan8-amd64-cross (14.2.0-19cross1) ... Selecting previously unselected package liblsan0-amd64-cross. Preparing to unpack .../064-liblsan0-amd64-cross_14.2.0-19cross1_all.deb ... Unpacking liblsan0-amd64-cross (14.2.0-19cross1) ... Selecting previously unselected package libtsan2-amd64-cross. Preparing to unpack .../065-libtsan2-amd64-cross_14.2.0-19cross1_all.deb ... Unpacking libtsan2-amd64-cross (14.2.0-19cross1) ... Selecting previously unselected package libc6-amd64-cross. Preparing to unpack .../066-libc6-amd64-cross_2.41-8cross1_all.deb ... Unpacking libc6-amd64-cross (2.41-8cross1) ... Selecting previously unselected package libstdc++6-amd64-cross. Preparing to unpack .../067-libstdc++6-amd64-cross_14.2.0-19cross1_all.deb ... Unpacking libstdc++6-amd64-cross (14.2.0-19cross1) ... Selecting previously unselected package libubsan1-amd64-cross. Preparing to unpack .../068-libubsan1-amd64-cross_14.2.0-19cross1_all.deb ... Unpacking libubsan1-amd64-cross (14.2.0-19cross1) ... Selecting previously unselected package libhwasan0-amd64-cross. Preparing to unpack .../069-libhwasan0-amd64-cross_14.2.0-19cross1_all.deb ... Unpacking libhwasan0-amd64-cross (14.2.0-19cross1) ... Selecting previously unselected package libquadmath0-amd64-cross. Preparing to unpack .../070-libquadmath0-amd64-cross_14.2.0-19cross1_all.deb ... Unpacking libquadmath0-amd64-cross (14.2.0-19cross1) ... Selecting previously unselected package libgcc-14-dev-amd64-cross. Preparing to unpack .../071-libgcc-14-dev-amd64-cross_14.2.0-19cross1_all.deb ... Unpacking libgcc-14-dev-amd64-cross (14.2.0-19cross1) ... Selecting previously unselected package gcc-14-x86-64-linux-gnu. Preparing to unpack .../072-gcc-14-x86-64-linux-gnu_14.2.0-19cross1_arm64.deb ... Unpacking gcc-14-x86-64-linux-gnu (14.2.0-19cross1) ... Selecting previously unselected package gcc-x86-64-linux-gnu. Preparing to unpack .../073-gcc-x86-64-linux-gnu_4%3a14.2.0-1_arm64.deb ... Unpacking gcc-x86-64-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package linux-libc-dev-amd64-cross. Preparing to unpack .../074-linux-libc-dev-amd64-cross_6.12.29-1cross1_all.deb ... Unpacking linux-libc-dev-amd64-cross (6.12.29-1cross1) ... Selecting previously unselected package libc6-dev-amd64-cross. Preparing to unpack .../075-libc6-dev-amd64-cross_2.41-8cross1_all.deb ... Unpacking libc6-dev-amd64-cross (2.41-8cross1) ... Selecting previously unselected package libstdc++-14-dev-amd64-cross. Preparing to unpack .../076-libstdc++-14-dev-amd64-cross_14.2.0-19cross1_all.deb ... Unpacking libstdc++-14-dev-amd64-cross (14.2.0-19cross1) ... Selecting previously unselected package g++-14-x86-64-linux-gnu. Preparing to unpack .../077-g++-14-x86-64-linux-gnu_14.2.0-19cross1_arm64.deb ... Unpacking g++-14-x86-64-linux-gnu (14.2.0-19cross1) ... Selecting previously unselected package g++-x86-64-linux-gnu. Preparing to unpack .../078-g++-x86-64-linux-gnu_4%3a14.2.0-1_arm64.deb ... Unpacking g++-x86-64-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package crossbuild-essential-amd64. Preparing to unpack .../079-crossbuild-essential-amd64_12.12_all.deb ... Unpacking crossbuild-essential-amd64 (12.12) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../080-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../081-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../082-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../083-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../084-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../085-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../086-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../087-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../088-gettext_0.23.1-2_arm64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../089-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../090-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../091-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package sgml-base. Preparing to unpack .../092-sgml-base_1.31+nmu1_all.deb ... Unpacking sgml-base (1.31+nmu1) ... Selecting previously unselected package xml-core. Preparing to unpack .../093-xml-core_0.19_all.deb ... Unpacking xml-core (0.19) ... Selecting previously unselected package sgml-data. Preparing to unpack .../094-sgml-data_2.0.11+nmu1_all.deb ... Unpacking sgml-data (2.0.11+nmu1) ... Selecting previously unselected package docbook. Preparing to unpack .../095-docbook_4.5-11_all.deb ... Unpacking docbook (4.5-11) ... Selecting previously unselected package libosp5. Preparing to unpack .../096-libosp5_1.5.2-15.2_arm64.deb ... Unpacking libosp5 (1.5.2-15.2) ... Selecting previously unselected package opensp. Preparing to unpack .../097-opensp_1.5.2-15.2_arm64.deb ... Unpacking opensp (1.5.2-15.2) ... Selecting previously unselected package docbook-to-man. Preparing to unpack .../098-docbook-to-man_1%3a2.0.0-48_arm64.deb ... Unpacking docbook-to-man (1:2.0.0-48) ... Selecting previously unselected package docbook-xml. Preparing to unpack .../099-docbook-xml_4.5-13_all.deb ... Unpacking docbook-xml (4.5-13) ... Selecting previously unselected package docbook-xsl. Preparing to unpack .../100-docbook-xsl_1.79.2+dfsg-7_all.deb ... Unpacking docbook-xsl (1.79.2+dfsg-7) ... Selecting previously unselected package libdw1t64:arm64. Preparing to unpack .../101-libdw1t64_0.192-4_arm64.deb ... Unpacking libdw1t64:arm64 (0.192-4) ... Selecting previously unselected package libasm1t64:arm64. Preparing to unpack .../102-libasm1t64_0.192-4_arm64.deb ... Unpacking libasm1t64:arm64 (0.192-4) ... Selecting previously unselected package libngtcp2-16:arm64. Preparing to unpack .../103-libngtcp2-16_1.11.0-1_arm64.deb ... Unpacking libngtcp2-16:arm64 (1.11.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64. Preparing to unpack .../104-libngtcp2-crypto-gnutls8_1.11.0-1_arm64.deb ... Unpacking libngtcp2-crypto-gnutls8:arm64 (1.11.0-1) ... Selecting previously unselected package libcurl3t64-gnutls:arm64. Preparing to unpack .../105-libcurl3t64-gnutls_8.14.1-2_arm64.deb ... Unpacking libcurl3t64-gnutls:arm64 (8.14.1-2) ... Selecting previously unselected package libjson-c5:arm64. Preparing to unpack .../106-libjson-c5_0.18+ds-1_arm64.deb ... Unpacking libjson-c5:arm64 (0.18+ds-1) ... Selecting previously unselected package libdebuginfod1t64:arm64. Preparing to unpack .../107-libdebuginfod1t64_0.192-4_arm64.deb ... Unpacking libdebuginfod1t64:arm64 (0.192-4) ... Selecting previously unselected package elfutils. Preparing to unpack .../108-elfutils_0.192-4_arm64.deb ... Unpacking elfutils (0.192-4) ... Selecting previously unselected package libfakeroot:arm64. Preparing to unpack .../109-libfakeroot_1.37.1.2-1_arm64.deb ... Unpacking libfakeroot:arm64 (1.37.1.2-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../110-fakeroot_1.37.1.2-1_arm64.deb ... Unpacking fakeroot (1.37.1.2-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../111-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../112-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../113-fontconfig-config_2.15.0-2.3_arm64.deb ... Unpacking fontconfig-config (2.15.0-2.3) ... Selecting previously unselected package libffi8:amd64. Preparing to unpack .../114-libffi8_3.4.8-2_amd64.deb ... Unpacking libffi8:amd64 (3.4.8-2) ... Selecting previously unselected package libatomic1:amd64. Preparing to unpack .../115-libatomic1_14.2.0-19_amd64.deb ... Unpacking libatomic1:amd64 (14.2.0-19) ... Selecting previously unselected package libblkid1:amd64. Preparing to unpack .../116-libblkid1_2.41-5_amd64.deb ... Unpacking libblkid1:amd64 (2.41-5) ... Selecting previously unselected package libpcre2-8-0:amd64. Preparing to unpack .../117-libpcre2-8-0_10.45-1_amd64.deb ... Unpacking libpcre2-8-0:amd64 (10.45-1) ... Selecting previously unselected package libselinux1:amd64. Preparing to unpack .../118-libselinux1_3.8.1-1_amd64.deb ... Unpacking libselinux1:amd64 (3.8.1-1) ... Selecting previously unselected package libmount1:amd64. Preparing to unpack .../119-libmount1_2.41-5_amd64.deb ... Unpacking libmount1:amd64 (2.41-5) ... Selecting previously unselected package zlib1g:amd64. Preparing to unpack .../120-zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libglib2.0-0t64:amd64. Preparing to unpack .../121-libglib2.0-0t64_2.84.3-1_amd64.deb ... Unpacking libglib2.0-0t64:amd64 (2.84.3-1) ... Selecting previously unselected package libgirepository-2.0-0:amd64. Preparing to unpack .../122-libgirepository-2.0-0_2.84.3-1_amd64.deb ... Unpacking libgirepository-2.0-0:amd64 (2.84.3-1) ... Selecting previously unselected package girepository-tools:amd64. Preparing to unpack .../123-girepository-tools_2.84.3-1_amd64.deb ... Unpacking girepository-tools:amd64 (2.84.3-1) ... Selecting previously unselected package native-architecture. Preparing to unpack .../124-native-architecture_0.2.6_all.deb ... Unpacking native-architecture (0.2.6) ... Selecting previously unselected package libglib2.0-0t64:arm64. Preparing to unpack .../125-libglib2.0-0t64_2.84.3-1_arm64.deb ... Unpacking libglib2.0-0t64:arm64 (2.84.3-1) ... Selecting previously unselected package libgirepository-2.0-0:arm64. Preparing to unpack .../126-libgirepository-2.0-0_2.84.3-1_arm64.deb ... Unpacking libgirepository-2.0-0:arm64 (2.84.3-1) ... Selecting previously unselected package girepository-tools:arm64. Preparing to unpack .../127-girepository-tools_2.84.3-1_arm64.deb ... Unpacking girepository-tools:arm64 (2.84.3-1) ... Selecting previously unselected package libpkgconf3:arm64. Preparing to unpack .../128-libpkgconf3_1.8.1-4_arm64.deb ... Unpacking libpkgconf3:arm64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../129-pkgconf-bin_1.8.1-4_arm64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:arm64. Preparing to unpack .../130-pkgconf_1.8.1-4_arm64.deb ... Unpacking pkgconf:arm64 (1.8.1-4) ... Selecting previously unselected package libgpg-error0:arm64. Preparing to unpack .../131-libgpg-error0_1.51-4_arm64.deb ... Unpacking libgpg-error0:arm64 (1.51-4) ... Selecting previously unselected package libgcrypt20:arm64. Preparing to unpack .../132-libgcrypt20_1.11.0-7_arm64.deb ... Unpacking libgcrypt20:arm64 (1.11.0-7) ... Selecting previously unselected package libxslt1.1:arm64. Preparing to unpack .../133-libxslt1.1_1.1.35-1.2_arm64.deb ... Unpacking libxslt1.1:arm64 (1.1.35-1.2) ... Selecting previously unselected package python3-lxml:arm64. Preparing to unpack .../134-python3-lxml_5.4.0-1_arm64.deb ... Unpacking python3-lxml:arm64 (5.4.0-1) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../135-python3-pygments_2.18.0+dfsg-2_all.deb ... Unpacking python3-pygments (2.18.0+dfsg-2) ... Selecting previously unselected package xsltproc. Preparing to unpack .../136-xsltproc_1.1.35-1.2_arm64.deb ... Unpacking xsltproc (1.1.35-1.2) ... Selecting previously unselected package gtk-doc-tools. Preparing to unpack .../137-gtk-doc-tools_1.34.0-2_all.deb ... Unpacking gtk-doc-tools (1.34.0-2) ... Selecting previously unselected package help2man. Preparing to unpack .../138-help2man_1.49.3+b1_arm64.deb ... Unpacking help2man (1.49.3+b1) ... Selecting previously unselected package libonig5:arm64. Preparing to unpack .../139-libonig5_6.9.9-1+b1_arm64.deb ... Unpacking libonig5:arm64 (6.9.9-1+b1) ... Selecting previously unselected package libjq1:arm64. Preparing to unpack .../140-libjq1_1.8.0-1_arm64.deb ... Unpacking libjq1:arm64 (1.8.0-1) ... Selecting previously unselected package jq. Preparing to unpack .../141-jq_1.8.0-1_arm64.deb ... Unpacking jq (1.8.0-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../142-libkrb5support0_1.21.3-5_amd64.deb ... Unpacking libkrb5support0:amd64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../143-libk5crypto3_1.21.3-5_amd64.deb ... Unpacking libk5crypto3:amd64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../144-libkeyutils1_1.6.3-6_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.3-6) ... Selecting previously unselected package libzstd1:amd64. Preparing to unpack .../145-libzstd1_1.5.7+dfsg-1_amd64.deb ... Unpacking libzstd1:amd64 (1.5.7+dfsg-1) ... Selecting previously unselected package libssl3t64:amd64. Preparing to unpack .../146-libssl3t64_3.5.0-2_amd64.deb ... Unpacking libssl3t64:amd64 (3.5.0-2) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../147-libkrb5-3_1.21.3-5_amd64.deb ... Unpacking libkrb5-3:amd64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../148-libgssapi-krb5-2_1.21.3-5_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.21.3-5) ... Selecting previously unselected package libgssrpc4t64:amd64. Preparing to unpack .../149-libgssrpc4t64_1.21.3-5_amd64.deb ... Unpacking libgssrpc4t64:amd64 (1.21.3-5) ... Selecting previously unselected package libkadm5clnt-mit12:amd64. Preparing to unpack .../150-libkadm5clnt-mit12_1.21.3-5_amd64.deb ... Unpacking libkadm5clnt-mit12:amd64 (1.21.3-5) ... Selecting previously unselected package libkdb5-10t64:amd64. Preparing to unpack .../151-libkdb5-10t64_1.21.3-5_amd64.deb ... Unpacking libkdb5-10t64:amd64 (1.21.3-5) ... Selecting previously unselected package libkadm5srv-mit12:amd64. Preparing to unpack .../152-libkadm5srv-mit12_1.21.3-5_amd64.deb ... Unpacking libkadm5srv-mit12:amd64 (1.21.3-5) ... Selecting previously unselected package krb5-multidev:amd64. Preparing to unpack .../153-krb5-multidev_1.21.3-5_amd64.deb ... Unpacking krb5-multidev:amd64 (1.21.3-5) ... Selecting previously unselected package libasan8:amd64. Preparing to unpack .../154-libasan8_14.2.0-19_amd64.deb ... Unpacking libasan8:amd64 (14.2.0-19) ... Selecting previously unselected package libbackward-cpp-dev. Preparing to unpack .../155-libbackward-cpp-dev_1.6-1_all.deb ... Unpacking libbackward-cpp-dev (1.6-1) ... Selecting previously unselected package libuuid1:amd64. Preparing to unpack .../156-libuuid1_2.41-5_amd64.deb ... Unpacking libuuid1:amd64 (2.41-5) ... Selecting previously unselected package uuid-dev:amd64. Preparing to unpack .../157-uuid-dev_2.41-5_amd64.deb ... Unpacking uuid-dev:amd64 (2.41-5) ... Selecting previously unselected package libblkid-dev:amd64. Preparing to unpack .../158-libblkid-dev_2.41-5_amd64.deb ... Unpacking libblkid-dev:amd64 (2.41-5) ... Selecting previously unselected package libgomp1:amd64. Preparing to unpack .../159-libgomp1_14.2.0-19_amd64.deb ... Unpacking libgomp1:amd64 (14.2.0-19) ... Selecting previously unselected package libitm1:amd64. Preparing to unpack .../160-libitm1_14.2.0-19_amd64.deb ... Unpacking libitm1:amd64 (14.2.0-19) ... Selecting previously unselected package liblsan0:amd64. Preparing to unpack .../161-liblsan0_14.2.0-19_amd64.deb ... Unpacking liblsan0:amd64 (14.2.0-19) ... Selecting previously unselected package libtsan2:amd64. Preparing to unpack .../162-libtsan2_14.2.0-19_amd64.deb ... Unpacking libtsan2:amd64 (14.2.0-19) ... Selecting previously unselected package libstdc++6:amd64. Preparing to unpack .../163-libstdc++6_14.2.0-19_amd64.deb ... Unpacking libstdc++6:amd64 (14.2.0-19) ... Selecting previously unselected package libubsan1:amd64. Preparing to unpack .../164-libubsan1_14.2.0-19_amd64.deb ... Unpacking libubsan1:amd64 (14.2.0-19) ... Selecting previously unselected package libhwasan0:amd64. Preparing to unpack .../165-libhwasan0_14.2.0-19_amd64.deb ... Unpacking libhwasan0:amd64 (14.2.0-19) ... Selecting previously unselected package libquadmath0:amd64. Preparing to unpack .../166-libquadmath0_14.2.0-19_amd64.deb ... Unpacking libquadmath0:amd64 (14.2.0-19) ... Selecting previously unselected package libgcc-14-dev:amd64. Preparing to unpack .../167-libgcc-14-dev_14.2.0-19_amd64.deb ... Unpacking libgcc-14-dev:amd64 (14.2.0-19) ... Selecting previously unselected package libstdc++-14-dev:amd64. Preparing to unpack .../168-libstdc++-14-dev_14.2.0-19_amd64.deb ... Unpacking libstdc++-14-dev:amd64 (14.2.0-19) ... Selecting previously unselected package libboost1.83-dev:amd64. Preparing to unpack .../169-libboost1.83-dev_1.83.0-4.2_amd64.deb ... Unpacking libboost1.83-dev:amd64 (1.83.0-4.2) ... Selecting previously unselected package libboost-program-options1.83.0:amd64. Preparing to unpack .../170-libboost-program-options1.83.0_1.83.0-4.2_amd64.deb ... Unpacking libboost-program-options1.83.0:amd64 (1.83.0-4.2) ... Selecting previously unselected package libboost-program-options1.83-dev:amd64. Preparing to unpack .../171-libboost-program-options1.83-dev_1.83.0-4.2_amd64.deb ... Unpacking libboost-program-options1.83-dev:amd64 (1.83.0-4.2) ... Selecting previously unselected package libboost-program-options-dev:amd64. Preparing to unpack .../172-libboost-program-options-dev_1.83.0.2+b2_amd64.deb ... Unpacking libboost-program-options-dev:amd64 (1.83.0.2+b2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../173-libbrotli1_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli1:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libbrotli-dev:amd64. Preparing to unpack .../174-libbrotli-dev_1.1.0-2+b7_amd64.deb ... Unpacking libbrotli-dev:amd64 (1.1.0-2+b7) ... Selecting previously unselected package libbz2-1.0:amd64. Preparing to unpack .../175-libbz2-1.0_1.0.8-6_amd64.deb ... Unpacking libbz2-1.0:amd64 (1.0.8-6) ... Selecting previously unselected package libbz2-dev:amd64. Preparing to unpack .../176-libbz2-dev_1.0.8-6_amd64.deb ... Unpacking libbz2-dev:amd64 (1.0.8-6) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../177-libexpat1_2.7.1-1_amd64.deb ... Unpacking libexpat1:amd64 (2.7.1-1) ... Selecting previously unselected package libpng16-16t64:amd64. Preparing to unpack .../178-libpng16-16t64_1.6.48-1_amd64.deb ... Unpacking libpng16-16t64:amd64 (1.6.48-1) ... Selecting previously unselected package libfreetype6:amd64. Preparing to unpack .../179-libfreetype6_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype6:amd64 (2.13.3+dfsg-1) ... Selecting previously unselected package libfontconfig1:amd64. Preparing to unpack .../180-libfontconfig1_2.15.0-2.3_amd64.deb ... Unpacking libfontconfig1:amd64 (2.15.0-2.3) ... Selecting previously unselected package libpixman-1-0:amd64. Preparing to unpack .../181-libpixman-1-0_0.44.0-3_amd64.deb ... Unpacking libpixman-1-0:amd64 (0.44.0-3) ... Selecting previously unselected package libxau6:amd64. Preparing to unpack .../182-libxau6_1%3a1.0.11-1_amd64.deb ... Unpacking libxau6:amd64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:amd64. Preparing to unpack .../183-libxdmcp6_1%3a1.1.5-1_amd64.deb ... Unpacking libxdmcp6:amd64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:amd64. Preparing to unpack .../184-libxcb1_1.17.0-2+b1_amd64.deb ... Unpacking libxcb1:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../185-libx11-data_2%3a1.8.12-1_all.deb ... Unpacking libx11-data (2:1.8.12-1) ... Selecting previously unselected package libx11-6:amd64. Preparing to unpack .../186-libx11-6_2%3a1.8.12-1_amd64.deb ... Unpacking libx11-6:amd64 (2:1.8.12-1) ... Selecting previously unselected package libxcb-render0:amd64. Preparing to unpack .../187-libxcb-render0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-render0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0:amd64. Preparing to unpack .../188-libxcb-shm0_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-shm0:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxext6:amd64. Preparing to unpack .../189-libxext6_2%3a1.3.4-1+b3_amd64.deb ... Unpacking libxext6:amd64 (2:1.3.4-1+b3) ... Selecting previously unselected package libxrender1:amd64. Preparing to unpack .../190-libxrender1_1%3a0.9.12-1_amd64.deb ... Unpacking libxrender1:amd64 (1:0.9.12-1) ... Selecting previously unselected package libcairo2:amd64. Preparing to unpack .../191-libcairo2_1.18.4-1+b1_amd64.deb ... Unpacking libcairo2:amd64 (1.18.4-1+b1) ... Selecting previously unselected package libcairo-gobject2:amd64. Preparing to unpack .../192-libcairo-gobject2_1.18.4-1+b1_amd64.deb ... Unpacking libcairo-gobject2:amd64 (1.18.4-1+b1) ... Selecting previously unselected package liblzo2-2:amd64. Preparing to unpack .../193-liblzo2-2_2.10-3+b1_amd64.deb ... Unpacking liblzo2-2:amd64 (2.10-3+b1) ... Selecting previously unselected package libcairo-script-interpreter2:amd64. Preparing to unpack .../194-libcairo-script-interpreter2_1.18.4-1+b1_amd64.deb ... Unpacking libcairo-script-interpreter2:amd64 (1.18.4-1+b1) ... Selecting previously unselected package libexpat1-dev:amd64. Preparing to unpack .../195-libexpat1-dev_2.7.1-1_amd64.deb ... Unpacking libexpat1-dev:amd64 (2.7.1-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../196-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libpng-dev:amd64. Preparing to unpack .../197-libpng-dev_1.6.48-1_amd64.deb ... Unpacking libpng-dev:amd64 (1.6.48-1) ... Selecting previously unselected package libfreetype-dev:amd64. Preparing to unpack .../198-libfreetype-dev_2.13.3+dfsg-1_amd64.deb ... Unpacking libfreetype-dev:amd64 (2.13.3+dfsg-1) ... Selecting previously unselected package pkgconf:amd64. Preparing to unpack .../199-pkgconf_1.8.1-4_amd64.deb ... Unpacking pkgconf:amd64 (1.8.1-4) ... Selecting previously unselected package libfontconfig-dev:amd64. Preparing to unpack .../200-libfontconfig-dev_2.15.0-2.3_amd64.deb ... Unpacking libfontconfig-dev:amd64 (2.15.0-2.3) ... Selecting previously unselected package libffi-dev:amd64. Preparing to unpack .../201-libffi-dev_3.4.8-2_amd64.deb ... Unpacking libffi-dev:amd64 (3.4.8-2) ... Selecting previously unselected package libsepol2:amd64. Preparing to unpack .../202-libsepol2_3.8.1-1_amd64.deb ... Unpacking libsepol2:amd64 (3.8.1-1) ... Selecting previously unselected package libsepol-dev:amd64. Preparing to unpack .../203-libsepol-dev_3.8.1-1_amd64.deb ... Unpacking libsepol-dev:amd64 (3.8.1-1) ... Selecting previously unselected package libpcre2-16-0:amd64. Preparing to unpack .../204-libpcre2-16-0_10.45-1_amd64.deb ... Unpacking libpcre2-16-0:amd64 (10.45-1) ... Selecting previously unselected package libpcre2-32-0:amd64. Preparing to unpack .../205-libpcre2-32-0_10.45-1_amd64.deb ... Unpacking libpcre2-32-0:amd64 (10.45-1) ... Selecting previously unselected package libpcre2-posix3:amd64. Preparing to unpack .../206-libpcre2-posix3_10.45-1_amd64.deb ... Unpacking libpcre2-posix3:amd64 (10.45-1) ... Selecting previously unselected package libpcre2-dev:amd64. Preparing to unpack .../207-libpcre2-dev_10.45-1_amd64.deb ... Unpacking libpcre2-dev:amd64 (10.45-1) ... Selecting previously unselected package libselinux1-dev:amd64. Preparing to unpack .../208-libselinux1-dev_3.8.1-1_amd64.deb ... Unpacking libselinux1-dev:amd64 (3.8.1-1) ... Selecting previously unselected package libmount-dev:amd64. Preparing to unpack .../209-libmount-dev_2.41-5_amd64.deb ... Unpacking libmount-dev:amd64 (2.41-5) ... Selecting previously unselected package libsysprof-capture-4-dev:amd64. Preparing to unpack .../210-libsysprof-capture-4-dev_48.0-2_amd64.deb ... Unpacking libsysprof-capture-4-dev:amd64 (48.0-2) ... Selecting previously unselected package libgio-2.0-dev:amd64. Preparing to unpack .../211-libgio-2.0-dev_2.84.3-1_amd64.deb ... Unpacking libgio-2.0-dev:amd64 (2.84.3-1) ... Selecting previously unselected package libglib2.0-data. Preparing to unpack .../212-libglib2.0-data_2.84.3-1_all.deb ... Unpacking libglib2.0-data (2.84.3-1) ... Selecting previously unselected package libglib2.0-bin. Preparing to unpack .../213-libglib2.0-bin_2.84.3-1_arm64.deb ... Unpacking libglib2.0-bin (2.84.3-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../214-python3-packaging_25.0-1_all.deb ... Unpacking python3-packaging (25.0-1) ... Selecting previously unselected package libgio-2.0-dev-bin. Preparing to unpack .../215-libgio-2.0-dev-bin_2.84.3-1_arm64.deb ... Unpacking libgio-2.0-dev-bin (2.84.3-1) ... Selecting previously unselected package libglib2.0-dev-bin. Preparing to unpack .../216-libglib2.0-dev-bin_2.84.3-1_arm64.deb ... Unpacking libglib2.0-dev-bin (2.84.3-1) ... Selecting previously unselected package libglib2.0-dev:amd64. Preparing to unpack .../217-libglib2.0-dev_2.84.3-1_amd64.deb ... Unpacking libglib2.0-dev:amd64 (2.84.3-1) ... Selecting previously unselected package libpixman-1-dev:amd64. Preparing to unpack .../218-libpixman-1-dev_0.44.0-3_amd64.deb ... Unpacking libpixman-1-dev:amd64 (0.44.0-3) ... Selecting previously unselected package x11-common. Preparing to unpack .../219-x11-common_1%3a7.7+24_all.deb ... Unpacking x11-common (1:7.7+24) ... Selecting previously unselected package libice6:amd64. Preparing to unpack .../220-libice6_2%3a1.1.1-1_amd64.deb ... Unpacking libice6:amd64 (2:1.1.1-1) ... Selecting previously unselected package libsm6:amd64. Preparing to unpack .../221-libsm6_2%3a1.2.6-1_amd64.deb ... Unpacking libsm6:amd64 (2:1.2.6-1) ... Selecting previously unselected package xorg-sgml-doctools. Preparing to unpack .../222-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ... Unpacking xorg-sgml-doctools (1:1.11-1.1) ... Selecting previously unselected package x11proto-dev. Preparing to unpack .../223-x11proto-dev_2024.1-1_all.deb ... Unpacking x11proto-dev (2024.1-1) ... Selecting previously unselected package libice-dev:amd64. Preparing to unpack .../224-libice-dev_2%3a1.1.1-1_amd64.deb ... Unpacking libice-dev:amd64 (2:1.1.1-1) ... Selecting previously unselected package libsm-dev:amd64. Preparing to unpack .../225-libsm-dev_2%3a1.2.6-1_amd64.deb ... Unpacking libsm-dev:amd64 (2:1.2.6-1) ... Selecting previously unselected package libxau-dev:amd64. Preparing to unpack .../226-libxau-dev_1%3a1.0.11-1_amd64.deb ... Unpacking libxau-dev:amd64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp-dev:amd64. Preparing to unpack .../227-libxdmcp-dev_1%3a1.1.5-1_amd64.deb ... Unpacking libxdmcp-dev:amd64 (1:1.1.5-1) ... Selecting previously unselected package xtrans-dev. Preparing to unpack .../228-xtrans-dev_1.4.0-1_all.deb ... Unpacking xtrans-dev (1.4.0-1) ... Selecting previously unselected package libxcb1-dev:amd64. Preparing to unpack .../229-libxcb1-dev_1.17.0-2+b1_amd64.deb ... Unpacking libxcb1-dev:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-dev:amd64. Preparing to unpack .../230-libx11-dev_2%3a1.8.12-1_amd64.deb ... Unpacking libx11-dev:amd64 (2:1.8.12-1) ... Selecting previously unselected package libxcb-render0-dev:amd64. Preparing to unpack .../231-libxcb-render0-dev_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-render0-dev:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0-dev:amd64. Preparing to unpack .../232-libxcb-shm0-dev_1.17.0-2+b1_amd64.deb ... Unpacking libxcb-shm0-dev:amd64 (1.17.0-2+b1) ... Selecting previously unselected package libxext-dev:amd64. Preparing to unpack .../233-libxext-dev_2%3a1.3.4-1+b3_amd64.deb ... Unpacking libxext-dev:amd64 (2:1.3.4-1+b3) ... Selecting previously unselected package libxrender-dev:amd64. Preparing to unpack .../234-libxrender-dev_1%3a0.9.12-1_amd64.deb ... Unpacking libxrender-dev:amd64 (1:0.9.12-1) ... Selecting previously unselected package libcairo2-dev:amd64. Preparing to unpack .../235-libcairo2-dev_1.18.4-1+b1_amd64.deb ... Unpacking libcairo2-dev:amd64 (1.18.4-1+b1) ... Selecting previously unselected package libgmp10:amd64. Preparing to unpack .../236-libgmp10_2%3a6.3.0+dfsg-3_amd64.deb ... Unpacking libgmp10:amd64 (2:6.3.0+dfsg-3) ... Selecting previously unselected package libnettle8t64:amd64. Preparing to unpack .../237-libnettle8t64_3.10.1-1_amd64.deb ... Unpacking libnettle8t64:amd64 (3.10.1-1) ... Selecting previously unselected package libhogweed6t64:amd64. Preparing to unpack .../238-libhogweed6t64_3.10.1-1_amd64.deb ... Unpacking libhogweed6t64:amd64 (3.10.1-1) ... Selecting previously unselected package libunistring5:amd64. Preparing to unpack .../239-libunistring5_1.3-2_amd64.deb ... Unpacking libunistring5:amd64 (1.3-2) ... Selecting previously unselected package libidn2-0:amd64. Preparing to unpack .../240-libidn2-0_2.3.8-2_amd64.deb ... Unpacking libidn2-0:amd64 (2.3.8-2) ... Selecting previously unselected package libp11-kit0:amd64. Preparing to unpack .../241-libp11-kit0_0.25.5-3_amd64.deb ... Unpacking libp11-kit0:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:amd64. Preparing to unpack .../242-libtasn1-6_4.20.0-2_amd64.deb ... Unpacking libtasn1-6:amd64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:amd64. Preparing to unpack .../243-libgnutls30t64_3.8.9-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.9-2) ... Selecting previously unselected package libdb5.3t64:amd64. Preparing to unpack .../244-libdb5.3t64_5.3.28+dfsg2-9_amd64.deb ... Unpacking libdb5.3t64:amd64 (5.3.28+dfsg2-9) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../245-libsasl2-modules-db_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../246-libsasl2-2_2.1.28+dfsg1-9_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Selecting previously unselected package libldap2:amd64. Preparing to unpack .../247-libldap2_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap2:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../248-libnghttp2-14_1.64.0-1.1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.64.0-1.1) ... Selecting previously unselected package libnghttp3-9:amd64. Preparing to unpack .../249-libnghttp3-9_1.8.0-1_amd64.deb ... Unpacking libnghttp3-9:amd64 (1.8.0-1) ... Selecting previously unselected package libngtcp2-16:amd64. Preparing to unpack .../250-libngtcp2-16_1.11.0-1_amd64.deb ... Unpacking libngtcp2-16:amd64 (1.11.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64. Preparing to unpack .../251-libngtcp2-crypto-gnutls8_1.11.0-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Selecting previously unselected package libpsl5t64:amd64. Preparing to unpack .../252-libpsl5t64_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../253-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:amd64. Preparing to unpack .../254-libssh2-1t64_1.11.1-1_amd64.deb ... Unpacking libssh2-1t64:amd64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:amd64. Preparing to unpack .../255-libcurl3t64-gnutls_8.14.1-2_amd64.deb ... Unpacking libcurl3t64-gnutls:amd64 (8.14.1-2) ... Selecting previously unselected package libevent-2.1-7t64:amd64. Preparing to unpack .../256-libevent-2.1-7t64_2.1.12-stable-10+b1_amd64.deb ... Unpacking libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:amd64. Preparing to unpack .../257-libunbound8_1.22.0-1+b1_amd64.deb ... Unpacking libunbound8:amd64 (1.22.0-1+b1) ... Selecting previously unselected package libgnutls-dane0t64:amd64. Preparing to unpack .../258-libgnutls-dane0t64_3.8.9-2_amd64.deb ... Unpacking libgnutls-dane0t64:amd64 (3.8.9-2) ... Selecting previously unselected package libgnutls-openssl27t64:amd64. Preparing to unpack .../259-libgnutls-openssl27t64_3.8.9-2_amd64.deb ... Unpacking libgnutls-openssl27t64:amd64 (3.8.9-2) ... Selecting previously unselected package libidn2-dev:amd64. Preparing to unpack .../260-libidn2-dev_2.3.8-2_amd64.deb ... Unpacking libidn2-dev:amd64 (2.3.8-2) ... Selecting previously unselected package libp11-kit-dev:amd64. Preparing to unpack .../261-libp11-kit-dev_0.25.5-3_amd64.deb ... Unpacking libp11-kit-dev:amd64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6-dev:amd64. Preparing to unpack .../262-libtasn1-6-dev_4.20.0-2_amd64.deb ... Unpacking libtasn1-6-dev:amd64 (4.20.0-2) ... Selecting previously unselected package libgmpxx4ldbl:amd64. Preparing to unpack .../263-libgmpxx4ldbl_2%3a6.3.0+dfsg-3_amd64.deb ... Unpacking libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ... Selecting previously unselected package libgmp-dev:amd64. Preparing to unpack .../264-libgmp-dev_2%3a6.3.0+dfsg-3_amd64.deb ... Unpacking libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Selecting previously unselected package nettle-dev:amd64. Preparing to unpack .../265-nettle-dev_3.10.1-1_amd64.deb ... Unpacking nettle-dev:amd64 (3.10.1-1) ... Selecting previously unselected package libgnutls28-dev:amd64. Preparing to unpack .../266-libgnutls28-dev_3.8.9-2_amd64.deb ... Unpacking libgnutls28-dev:amd64 (3.8.9-2) ... Selecting previously unselected package libkrb5-dev:amd64. Preparing to unpack .../267-libkrb5-dev_1.21.3-5_amd64.deb ... Unpacking libkrb5-dev:amd64 (1.21.3-5) ... Selecting previously unselected package libldap-dev:amd64. Preparing to unpack .../268-libldap-dev_2.6.10+dfsg-1_amd64.deb ... Unpacking libldap-dev:amd64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-dev:amd64. Preparing to unpack .../269-libnghttp2-dev_1.64.0-1.1_amd64.deb ... Unpacking libnghttp2-dev:amd64 (1.64.0-1.1) ... Selecting previously unselected package libnghttp3-dev:amd64. Preparing to unpack .../270-libnghttp3-dev_1.8.0-1_amd64.deb ... Unpacking libnghttp3-dev:amd64 (1.8.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls-dev:amd64. Preparing to unpack .../271-libngtcp2-crypto-gnutls-dev_1.11.0-1_amd64.deb ... Unpacking libngtcp2-crypto-gnutls-dev:amd64 (1.11.0-1) ... Selecting previously unselected package libngtcp2-dev:amd64. Preparing to unpack .../272-libngtcp2-dev_1.11.0-1_amd64.deb ... Unpacking libngtcp2-dev:amd64 (1.11.0-1) ... Selecting previously unselected package libpsl-dev:amd64. Preparing to unpack .../273-libpsl-dev_0.21.2-1.1+b1_amd64.deb ... Unpacking libpsl-dev:amd64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp-dev:amd64. Preparing to unpack .../274-librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_amd64.deb ... Unpacking librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssl-dev:amd64. Preparing to unpack .../275-libssl-dev_3.5.0-2_amd64.deb ... Unpacking libssl-dev:amd64 (3.5.0-2) ... Selecting previously unselected package libssh2-1-dev:amd64. Preparing to unpack .../276-libssh2-1-dev_1.11.1-1_amd64.deb ... Unpacking libssh2-1-dev:amd64 (1.11.1-1) ... Selecting previously unselected package libzstd-dev:amd64. Preparing to unpack .../277-libzstd-dev_1.5.7+dfsg-1_amd64.deb ... Unpacking libzstd-dev:amd64 (1.5.7+dfsg-1) ... Selecting previously unselected package libcurl4-gnutls-dev:amd64. Preparing to unpack .../278-libcurl4-gnutls-dev_8.14.1-2_amd64.deb ... Unpacking libcurl4-gnutls-dev:amd64 (8.14.1-2) ... Selecting previously unselected package libcurl4t64:amd64. Preparing to unpack .../279-libcurl4t64_8.14.1-2_amd64.deb ... Unpacking libcurl4t64:amd64 (8.14.1-2) ... Selecting previously unselected package libdeflate0:amd64. Preparing to unpack .../280-libdeflate0_1.23-2_amd64.deb ... Unpacking libdeflate0:amd64 (1.23-2) ... Selecting previously unselected package libdeflate-dev:amd64. Preparing to unpack .../281-libdeflate-dev_1.23-2_amd64.deb ... Unpacking libdeflate-dev:amd64 (1.23-2) ... Selecting previously unselected package libdisorder0:amd64. Preparing to unpack .../282-libdisorder0_0.0.2+git20130809.8062ee1-4+b2_amd64.deb ... Unpacking libdisorder0:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Selecting previously unselected package libdisorder-dev:amd64. Preparing to unpack .../283-libdisorder-dev_0.0.2+git20130809.8062ee1-4+b2_amd64.deb ... Unpacking libdisorder-dev:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Selecting previously unselected package libdivsufsort3:amd64. Preparing to unpack .../284-libdivsufsort3_2.0.1-6+b1_amd64.deb ... Unpacking libdivsufsort3:amd64 (2.0.1-6+b1) ... Selecting previously unselected package libdivsufsort-dev:amd64. Preparing to unpack .../285-libdivsufsort-dev_2.0.1-6+b1_amd64.deb ... Unpacking libdivsufsort-dev:amd64 (2.0.1-6+b1) ... Selecting previously unselected package libelf1t64:amd64. Preparing to unpack .../286-libelf1t64_0.192-4_amd64.deb ... Unpacking libelf1t64:amd64 (0.192-4) ... Selecting previously unselected package libelf-dev:amd64. Preparing to unpack .../287-libelf-dev_0.192-4_amd64.deb ... Unpacking libelf-dev:amd64 (0.192-4) ... Selecting previously unselected package liblzma5:amd64. Preparing to unpack .../288-liblzma5_5.8.1-1_amd64.deb ... Unpacking liblzma5:amd64 (5.8.1-1) ... Selecting previously unselected package libdw1t64:amd64. Preparing to unpack .../289-libdw1t64_0.192-4_amd64.deb ... Unpacking libdw1t64:amd64 (0.192-4) ... Selecting previously unselected package liblzma-dev:amd64. Preparing to unpack .../290-liblzma-dev_5.8.1-1_amd64.deb ... Unpacking liblzma-dev:amd64 (5.8.1-1) ... Selecting previously unselected package libdw-dev:amd64. Preparing to unpack .../291-libdw-dev_0.192-4_amd64.deb ... Unpacking libdw-dev:amd64 (0.192-4) ... Selecting previously unselected package libfastahack0:amd64. Preparing to unpack .../292-libfastahack0_1.0.0+dfsg-11+b2_amd64.deb ... Unpacking libfastahack0:amd64 (1.0.0+dfsg-11+b2) ... Selecting previously unselected package libfastahack-dev:amd64. Preparing to unpack .../293-libfastahack-dev_1.0.0+dfsg-11+b2_amd64.deb ... Unpacking libfastahack-dev:amd64 (1.0.0+dfsg-11+b2) ... Selecting previously unselected package libfml0:amd64. Preparing to unpack .../294-libfml0_0.1+git20221215.85f159e-1_amd64.deb ... Unpacking libfml0:amd64 (0.1+git20221215.85f159e-1) ... Selecting previously unselected package libfml-dev:amd64. Preparing to unpack .../295-libfml-dev_0.1+git20221215.85f159e-1_amd64.deb ... Unpacking libfml-dev:amd64 (0.1+git20221215.85f159e-1) ... Selecting previously unselected package libgpg-error0:amd64. Preparing to unpack .../296-libgpg-error0_1.51-4_amd64.deb ... Unpacking libgpg-error0:amd64 (1.51-4) ... Selecting previously unselected package libgcrypt20:amd64. Preparing to unpack .../297-libgcrypt20_1.11.0-7_amd64.deb ... Unpacking libgcrypt20:amd64 (1.11.0-7) ... Selecting previously unselected package libhtscodecs2:amd64. Preparing to unpack .../298-libhtscodecs2_1.6.1-2_amd64.deb ... Unpacking libhtscodecs2:amd64 (1.6.1-2) ... Selecting previously unselected package libhts3t64:amd64. Preparing to unpack .../299-libhts3t64_1.21+ds-1_amd64.deb ... Unpacking libhts3t64:amd64 (1.21+ds-1) ... Selecting previously unselected package libhts-dev:amd64. Preparing to unpack .../300-libhts-dev_1.21+ds-1_amd64.deb ... Unpacking libhts-dev:amd64 (1.21+ds-1) ... Selecting previously unselected package libicu76:amd64. Preparing to unpack .../301-libicu76_76.1-4_amd64.deb ... Unpacking libicu76:amd64 (76.1-4) ... Selecting previously unselected package libjansson4:amd64. Preparing to unpack .../302-libjansson4_2.14-2+b3_amd64.deb ... Unpacking libjansson4:amd64 (2.14-2+b3) ... Selecting previously unselected package libjansson-dev:amd64. Preparing to unpack .../303-libjansson-dev_2.14-2+b3_amd64.deb ... Unpacking libjansson-dev:amd64 (2.14-2+b3) ... Selecting previously unselected package libjemalloc2:amd64. Preparing to unpack .../304-libjemalloc2_5.3.0-3_amd64.deb ... Unpacking libjemalloc2:amd64 (5.3.0-3) ... Selecting previously unselected package libjemalloc-dev:amd64. Preparing to unpack .../305-libjemalloc-dev_5.3.0-3_amd64.deb ... Unpacking libjemalloc-dev:amd64 (5.3.0-3) ... Selecting previously unselected package libltdl7:amd64. Preparing to unpack .../306-libltdl7_2.5.4-4_amd64.deb ... Unpacking libltdl7:amd64 (2.5.4-4) ... Selecting previously unselected package libxxhash0:amd64. Preparing to unpack .../307-libxxhash0_0.8.3-2_amd64.deb ... Unpacking libxxhash0:amd64 (0.8.3-2) ... Selecting previously unselected package liblz4-1:amd64. Preparing to unpack .../308-liblz4-1_1.10.0-4_amd64.deb ... Unpacking liblz4-1:amd64 (1.10.0-4) ... Selecting previously unselected package libxxhash-dev:amd64. Preparing to unpack .../309-libxxhash-dev_0.8.3-2_amd64.deb ... Unpacking libxxhash-dev:amd64 (0.8.3-2) ... Selecting previously unselected package liblz4-dev:amd64. Preparing to unpack .../310-liblz4-dev_1.10.0-4_amd64.deb ... Unpacking liblz4-dev:amd64 (1.10.0-4) ... Selecting previously unselected package libmhash2:amd64. Preparing to unpack .../311-libmhash2_0.9.9.9-10_amd64.deb ... Unpacking libmhash2:amd64 (0.9.9.9-10) ... Selecting previously unselected package libtinfo6:amd64. Preparing to unpack .../312-libtinfo6_6.5+20250216-2_amd64.deb ... Unpacking libtinfo6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../313-libncurses6_6.5+20250216-2_amd64.deb ... Unpacking libncurses6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../314-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libncurses-dev:amd64. Preparing to unpack .../315-libncurses-dev_6.5+20250216-2_amd64.deb ... Unpacking libncurses-dev:amd64 (6.5+20250216-2) ... Selecting previously unselected package libprotobuf32t64:amd64. Preparing to unpack .../316-libprotobuf32t64_3.21.12-11_amd64.deb ... Unpacking libprotobuf32t64:amd64 (3.21.12-11) ... Selecting previously unselected package libprotobuf-lite32t64:amd64. Preparing to unpack .../317-libprotobuf-lite32t64_3.21.12-11_amd64.deb ... Unpacking libprotobuf-lite32t64:amd64 (3.21.12-11) ... Selecting previously unselected package libprotobuf-dev:amd64. Preparing to unpack .../318-libprotobuf-dev_3.21.12-11_amd64.deb ... Unpacking libprotobuf-dev:amd64 (3.21.12-11) ... Selecting previously unselected package libprotobuf32t64:arm64. Preparing to unpack .../319-libprotobuf32t64_3.21.12-11_arm64.deb ... Unpacking libprotobuf32t64:arm64 (3.21.12-11) ... Selecting previously unselected package libprotoc32t64:amd64. Preparing to unpack .../320-libprotoc32t64_3.21.12-11_amd64.deb ... Unpacking libprotoc32t64:amd64 (3.21.12-11) ... Selecting previously unselected package libprotoc-dev:amd64. Preparing to unpack .../321-libprotoc-dev_3.21.12-11_amd64.deb ... Unpacking libprotoc-dev:amd64 (3.21.12-11) ... Selecting previously unselected package libprotoc32t64:arm64. Preparing to unpack .../322-libprotoc32t64_3.21.12-11_arm64.deb ... Unpacking libprotoc32t64:arm64 (3.21.12-11) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../323-libxml2_2.12.7+dfsg+really2.9.14-1_amd64.deb ... Unpacking libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Selecting previously unselected package libxslt1.1:amd64. Preparing to unpack .../324-libxslt1.1_1.1.35-1.2_amd64.deb ... Unpacking libxslt1.1:amd64 (1.1.35-1.2) ... Selecting previously unselected package libyajl2:amd64. Preparing to unpack .../325-libyajl2_2.1.0-5+b2_amd64.deb ... Unpacking libyajl2:amd64 (2.1.0-5+b2) ... Selecting previously unselected package libraptor2-0:amd64. Preparing to unpack .../326-libraptor2-0_2.0.16-6_amd64.deb ... Unpacking libraptor2-0:amd64 (2.0.16-6) ... Selecting previously unselected package libxml2-dev:amd64. Preparing to unpack .../327-libxml2-dev_2.12.7+dfsg+really2.9.14-1_amd64.deb ... Unpacking libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-1) ... Selecting previously unselected package libxslt1-dev:amd64. Preparing to unpack .../328-libxslt1-dev_1.1.35-1.2_amd64.deb ... Unpacking libxslt1-dev:amd64 (1.1.35-1.2) ... Selecting previously unselected package libyajl-dev:amd64. Preparing to unpack .../329-libyajl-dev_2.1.0-5+b2_amd64.deb ... Unpacking libyajl-dev:amd64 (2.1.0-5+b2) ... Selecting previously unselected package libraptor2-dev:amd64. Preparing to unpack .../330-libraptor2-dev_2.0.16-6_amd64.deb ... Unpacking libraptor2-dev:amd64 (2.0.16-6) ... Selecting previously unselected package librasqal3t64:amd64. Preparing to unpack .../331-librasqal3t64_0.9.33-2.1+b2_amd64.deb ... Unpacking librasqal3t64:amd64 (0.9.33-2.1+b2) ... Selecting previously unselected package librasqal3-dev:amd64. Preparing to unpack .../332-librasqal3-dev_0.9.33-2.1+b2_amd64.deb ... Unpacking librasqal3-dev:amd64 (0.9.33-2.1+b2) ... Selecting previously unselected package librdf0t64:amd64. Preparing to unpack .../333-librdf0t64_1.0.17-4+b1_amd64.deb ... Unpacking librdf0t64:amd64 (1.0.17-4+b1) ... Selecting previously unselected package librdf0-dev:amd64. Preparing to unpack .../334-librdf0-dev_1.0.17-4+b1_amd64.deb ... Unpacking librdf0-dev:amd64 (1.0.17-4+b1) ... Selecting previously unselected package libsimde-dev. Preparing to unpack .../335-libsimde-dev_0.8.2-3_all.deb ... Unpacking libsimde-dev (0.8.2-3) ... Selecting previously unselected package libsmithwaterman0:amd64. Preparing to unpack .../336-libsmithwaterman0_0.0+git20160702.2610e25-12+b2_amd64.deb ... Unpacking libsmithwaterman0:amd64 (0.0+git20160702.2610e25-12+b2) ... Selecting previously unselected package libsmithwaterman-dev:amd64. Preparing to unpack .../337-libsmithwaterman-dev_0.0+git20160702.2610e25-12+b2_amd64.deb ... Unpacking libsmithwaterman-dev:amd64 (0.0+git20160702.2610e25-12+b2) ... Selecting previously unselected package libsparsehash-dev. Preparing to unpack .../338-libsparsehash-dev_2.0.3-2_all.deb ... Unpacking libsparsehash-dev (2.0.3-2) ... Selecting previously unselected package libssw0:amd64. Preparing to unpack .../339-libssw0_1.1-15+b2_amd64.deb ... Unpacking libssw0:amd64 (1.1-15+b2) ... Selecting previously unselected package libssw-dev:amd64. Preparing to unpack .../340-libssw-dev_1.1-15+b2_amd64.deb ... Unpacking libssw-dev:amd64 (1.1-15+b2) ... Selecting previously unselected package libtabixpp0t64:amd64. Preparing to unpack .../341-libtabixpp0t64_1.1.2-2.1+b1_amd64.deb ... Unpacking libtabixpp0t64:amd64 (1.1.2-2.1+b1) ... Selecting previously unselected package libtabixpp-dev:amd64. Preparing to unpack .../342-libtabixpp-dev_1.1.2-2.1+b1_amd64.deb ... Unpacking libtabixpp-dev:amd64 (1.1.2-2.1+b1) ... Selecting previously unselected package libtsl-hopscotch-map-dev. Preparing to unpack .../343-libtsl-hopscotch-map-dev_2.3.1-1_all.deb ... Unpacking libtsl-hopscotch-map-dev (2.3.1-1) ... Selecting previously unselected package libwfa2-0:amd64. Preparing to unpack .../344-libwfa2-0_2.3.3-4+b2_amd64.deb ... Unpacking libwfa2-0:amd64 (2.3.3-4+b2) ... Selecting previously unselected package libvcflib2:amd64. Preparing to unpack .../345-libvcflib2_1.0.12+dfsg-1_amd64.deb ... Unpacking libvcflib2:amd64 (1.0.12+dfsg-1) ... Selecting previously unselected package libwfa2-dev:amd64. Preparing to unpack .../346-libwfa2-dev_2.3.3-4+b2_amd64.deb ... Unpacking libwfa2-dev:amd64 (2.3.3-4+b2) ... Selecting previously unselected package libvcflib-dev:amd64. Preparing to unpack .../347-libvcflib-dev_1.0.12+dfsg-1_amd64.deb ... Unpacking libvcflib-dev:amd64 (1.0.12+dfsg-1) ... Selecting previously unselected package protobuf-compiler. Preparing to unpack .../348-protobuf-compiler_3.21.12-11_arm64.deb ... Unpacking protobuf-compiler (3.21.12-11) ... Selecting previously unselected package rapidjson-dev. Preparing to unpack .../349-rapidjson-dev_1.1.0+dfsg2-7.4_all.deb ... Unpacking rapidjson-dev (1.1.0+dfsg2-7.4) ... Selecting previously unselected package rs. Preparing to unpack .../350-rs_20200313-1+b1_arm64.deb ... Unpacking rs (20200313-1+b1) ... Selecting previously unselected package unzip. Preparing to unpack .../351-unzip_6.0-29_arm64.deb ... Unpacking unzip (6.0-29) ... Selecting previously unselected package sbuild-build-depends-main-dummy:amd64. Preparing to unpack .../352-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libsimde-dev (0.8.2-3) ... Setting up libtext-charwidth-perl:arm64 (0.04-11+b4) ... Setting up libprotobuf32t64:arm64 (3.21.12-11) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up gcc-14-x86-64-linux-gnu-base:arm64 (14.2.0-19cross1) ... Setting up native-architecture (0.2.6) ... Setting up linux-libc-dev-amd64-cross (6.12.29-1cross1) ... Setting up bsdextrautils (2.41-5) ... Setting up libgpg-error0:arm64 (1.51-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up gcc-14-base:amd64 (14.2.0-19) ... Setting up gawk (1:5.3.2-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up unzip (6.0-29) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libuv1t64:arm64 (1.50.0-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block. Setting up libnghttp2-14:arm64 (1.64.0-1.1) ... Setting up bc (1.07.1-4+b1) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up libgcrypt20:arm64 (1.11.0-7) ... Setting up gcc-14-cross-base (14.2.0-19cross1) ... Setting up libcom-err2:arm64 (1.47.2-3+b1) ... Setting up file (1:5.46-5) ... Setting up libsparsehash-dev (2.0.3-2) ... Setting up libgomp1-amd64-cross (14.2.0-19cross1) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libfakeroot:arm64 (1.37.1.2-1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up rapidjson-dev (1.1.0+dfsg2-7.4) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libdw1t64:arm64 (0.192-4) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up libosp5 (1.5.2-15.2) ... Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Jul 2 17:11:01 UTC 2025. Universal Time is now: Wed Jul 2 17:11:01 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up fakeroot (1.37.1.2-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libsysprof-capture-4-dev:amd64 (48.0-2) ... Setting up libitm1-amd64-cross (14.2.0-19cross1) ... Setting up libbackward-cpp-dev (1.6-1) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20240727.1) ... Setting up libglib2.0-data (2.84.3-1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libatomic1-amd64-cross (14.2.0-19cross1) ... Setting up libx11-data (2:1.8.12-1) ... Setting up qemu-user (1:10.0.2+ds-1) ... Setting up libjsoncpp26:arm64 (1.9.6-3) ... Setting up libtsl-hopscotch-map-dev (2.3.1-1) ... Setting up libasm1t64:arm64 (0.192-4) ... Setting up libproc2-0:arm64 (2:4.0.4-8) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libquadmath0-amd64-cross (14.2.0-19cross1) ... Setting up autopoint (0.23.1-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up cpp-14-x86-64-linux-gnu (14.2.0-19cross1) ... Setting up libc6-amd64-cross (2.41-8cross1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libncursesw6:arm64 (6.5+20250216-2) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.8.0-1) ... Setting up libffi8:arm64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-8) ... Setting up bison (2:3.8.2+dfsg-1+b2) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:arm64 (1.11.0-1) ... Setting up sgml-base (1.31+nmu1) ... Setting up cmake-data (3.31.6-2) ... Setting up librhash1:arm64 (1.4.6-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libprotoc32t64:arm64 (3.21.12-11) ... Setting up libgcc-s1-amd64-cross (14.2.0-19cross1) ... Setting up libpython3.13-stdlib:arm64 (3.13.5-2) ... Setting up libjson-c5:arm64 (0.18+ds-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-1) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up libonig5:arm64 (6.9.9-1+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up libpython3-stdlib:arm64 (3.13.5-1) ... Setting up binutils-x86-64-linux-gnu (2.44-3) ... Setting up rs (20200313-1+b1) ... Setting up libstdc++6-amd64-cross (14.2.0-19cross1) ... Setting up cpp-x86-64-linux-gnu (4:14.2.0-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up flex (2.6.4-8.2+b4) ... Setting up gettext (0.23.1-2) ... Setting up protobuf-compiler (3.21.12-11) ... Setting up libtool (2.5.4-4) ... Setting up python3.13 (3.13.5-2) ... Setting up libjq1:arm64 (1.8.0-1) ... Setting up fontconfig-config (2.15.0-2.3) ... Setting up libasan8-amd64-cross (14.2.0-19cross1) ... Setting up liblsan0-amd64-cross (14.2.0-19cross1) ... Setting up libc6-dev-amd64-cross (2.41-8cross1) ... Setting up libtsan2-amd64-cross (14.2.0-19cross1) ... Setting up python3 (3.13.5-1) ... Setting up libidn2-0:arm64 (2.3.8-2) ... Setting up opensp (1.5.2-15.2) ... Setting up pkgconf:amd64 (1.8.1-4) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (20) ... Setting up python3-pygments (2.18.0+dfsg-2) ... Setting up libglib2.0-0t64:arm64 (2.84.3-1) ... No schema files found: doing nothing. Setting up python3-packaging (25.0-1) ... Setting up libhwasan0-amd64-cross (14.2.0-19cross1) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libubsan1-amd64-cross (14.2.0-19cross1) ... Setting up ucf (3.0052) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up libgcc-14-dev-amd64-cross (14.2.0-19cross1) ... Setting up groff-base (1.23.0-9) ... Setting up xml-core (0.19) ... Setting up jq (1.8.0-1) ... Setting up libxslt1.1:arm64 (1.1.35-1.2) ... Setting up gcc-14-x86-64-linux-gnu (14.2.0-19cross1) ... Setting up libarchive13t64:arm64 (3.7.4-3) ... Setting up libstdc++-14-dev-amd64-cross (14.2.0-19cross1) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up libgio-2.0-dev-bin (2.84.3-1) ... Setting up gcc-x86-64-linux-gnu (4:14.2.0-1) ... Setting up libdebuginfod-common (0.192-4) ... Setting up libgirepository-2.0-0:arm64 (2.84.3-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up xsltproc (1.1.35-1.2) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libglib2.0-bin (2.84.3-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up g++-14-x86-64-linux-gnu (14.2.0-19cross1) ... Setting up python3-lxml:arm64 (5.4.0-1) ... Setting up g++-x86-64-linux-gnu (4:14.2.0-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.11.0-1) ... Setting up girepository-tools:arm64 (2.84.3-1) ... Setting up libcurl4t64:arm64 (8.14.1-2) ... Setting up libcurl3t64-gnutls:arm64 (8.14.1-2) ... Setting up debhelper (13.24.2) ... Setting up crossbuild-essential-amd64 (12.12) ... Setting up cmake (3.31.6-2) ... Setting up libglib2.0-dev-bin (2.84.3-1) ... Setting up libdebuginfod1t64:arm64 (0.192-4) ... Setting up elfutils (0.192-4) ... Setting up libgcc-s1:amd64 (14.2.0-19) ... Setting up libc6:amd64 (2.41-9) ... Setting up libnghttp3-9:amd64 (1.8.0-1) ... Setting up libmhash2:amd64 (0.9.9.9-10) ... Setting up libnghttp3-dev:amd64 (1.8.0-1) ... Setting up libdb5.3t64:amd64 (5.3.28+dfsg2-9) ... Setting up libffi8:amd64 (3.4.8-2) ... Setting up libhwasan0:amd64 (14.2.0-19) ... Setting up libasan8:amd64 (14.2.0-19) ... Setting up libxxhash0:amd64 (0.8.3-2) ... Setting up libtasn1-6:amd64 (4.20.0-2) ... Setting up libngtcp2-16:amd64 (1.11.0-1) ... Setting up libtsan2:amd64 (14.2.0-19) ... Setting up libbz2-1.0:amd64 (1.0.8-6) ... Setting up libdivsufsort3:amd64 (2.0.1-6+b1) ... Setting up libtasn1-6-dev:amd64 (4.20.0-2) ... Setting up libblkid1:amd64 (2.41-5) ... Setting up libstdc++6:amd64 (14.2.0-19) ... Setting up liblsan0:amd64 (14.2.0-19) ... Setting up libitm1:amd64 (14.2.0-19) ... Setting up libtinfo6:amd64 (6.5+20250216-2) ... Setting up libdivsufsort-dev:amd64 (2.0.1-6+b1) ... Setting up libhtscodecs2:amd64 (1.6.1-2) ... Setting up libprotobuf-lite32t64:amd64 (3.21.12-11) ... Setting up libexpat1:amd64 (2.7.1-1) ... Setting up libdisorder0:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Setting up libboost-program-options1.83.0:amd64 (1.83.0-4.2) ... Setting up libpixman-1-0:amd64 (0.44.0-3) ... Setting up libwfa2-0:amd64 (2.3.3-4+b2) ... Setting up libzstd1:amd64 (1.5.7+dfsg-1) ... Setting up libice6:amd64 (2:1.1.1-1) ... Setting up libxau6:amd64 (1:1.0.11-1) ... Setting up libxdmcp6:amd64 (1:1.1.5-1) ... Setting up libkeyutils1:amd64 (1.6.3-6) ... Setting up libxcb1:amd64 (1.17.0-2+b1) ... Setting up libpixman-1-dev:amd64 (0.44.0-3) ... Setting up libzstd-dev:amd64 (1.5.7+dfsg-1) ... Setting up libxau-dev:amd64 (1:1.0.11-1) ... Setting up liblzma5:amd64 (5.8.1-1) ... Setting up libgpg-error0:amd64 (1.51-4) ... Setting up libice-dev:amd64 (2:1.1.1-1) ... Setting up libxcb-render0:amd64 (1.17.0-2+b1) ... Setting up liblz4-1:amd64 (1.10.0-4) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libyajl2:amd64 (2.1.0-5+b2) ... Setting up libsmithwaterman0:amd64 (0.0+git20160702.2610e25-12+b2) ... Setting up libnghttp2-14:amd64 (1.64.0-1.1) ... Setting up libdeflate0:amd64 (1.23-2) ... Setting up libevent-2.1-7t64:amd64 (2.1.12-stable-10+b1) ... Setting up libgcrypt20:amd64 (1.11.0-7) ... Setting up libwfa2-dev:amd64 (2.3.3-4+b2) ... Setting up liblzo2-2:amd64 (2.10-3+b1) ... Setting up zlib1g:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:amd64 (1:4.4.38-1) ... Setting up libxcb-shm0:amd64 (1.17.0-2+b1) ... Setting up libcom-err2:amd64 (1.47.2-3+b1) ... Setting up libjemalloc2:amd64 (5.3.0-3) ... Setting up libngtcp2-dev:amd64 (1.11.0-1) ... Setting up libgomp1:amd64 (14.2.0-19) ... Setting up libffi-dev:amd64 (3.4.8-2) ... Setting up libfml0:amd64 (0.1+git20221215.85f159e-1) ... Setting up libfastahack0:amd64 (1.0.0+dfsg-11+b2) ... Setting up libpcre2-16-0:amd64 (10.45-1) ... Setting up libelf1t64:amd64 (0.192-4) ... Setting up libjansson4:amd64 (2.14-2+b3) ... Setting up libkrb5support0:amd64 (1.21.3-5) ... Setting up libdw1t64:amd64 (0.192-4) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-9) ... Setting up libfastahack-dev:amd64 (1.0.0+dfsg-11+b2) ... Setting up libjemalloc-dev:amd64 (5.3.0-3) ... Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ... Setting up libnettle8t64:amd64 (3.10.1-1) ... Setting up libpcre2-32-0:amd64 (10.45-1) ... Setting up libgmp10:amd64 (2:6.3.0+dfsg-3) ... Setting up libncurses6:amd64 (6.5+20250216-2) ... Setting up libquadmath0:amd64 (14.2.0-19) ... Setting up libp11-kit0:amd64 (0.25.5-3) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libpng16-16t64:amd64 (1.6.48-1) ... Setting up libatomic1:amd64 (14.2.0-19) ... Setting up libuuid1:amd64 (2.41-5) ... Setting up libsepol2:amd64 (3.8.1-1) ... Setting up libsepol-dev:amd64 (3.8.1-1) ... Setting up libpcre2-8-0:amd64 (10.45-1) ... Setting up cross-exe-wrapper:amd64 (0.2.6) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libk5crypto3:amd64 (1.21.3-5) ... Setting up libdisorder-dev:amd64 (0.0.2+git20130809.8062ee1-4+b2) ... Setting up libltdl7:amd64 (2.5.4-4) ... Setting up libxxhash-dev:amd64 (0.8.3-2) ... Setting up libyajl-dev:amd64 (2.1.0-5+b2) ... Setting up liblzma-dev:amd64 (5.8.1-1) ... Setting up libubsan1:amd64 (14.2.0-19) ... Setting up libpcre2-posix3:amd64 (10.45-1) ... Setting up libhogweed6t64:amd64 (3.10.1-1) ... Setting up libcrypt-dev:amd64 (1:4.4.38-1) ... Setting up libc6-dev:amd64 (2.41-9) ... Setting up libx11-6:amd64 (2:1.8.12-1) ... Setting up libicu76:amd64 (76.1-4) ... Setting up libgcc-14-dev:amd64 (14.2.0-19) ... Setting up libdeflate-dev:amd64 (1.23-2) ... Setting up libstdc++-14-dev:amd64 (14.2.0-19) ... Setting up libsm6:amd64 (2:1.2.6-1) ... Setting up libssw0:amd64 (1.1-15+b2) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ... Setting up libjansson-dev:amd64 (2.14-2+b3) ... Setting up libbrotli-dev:amd64 (1.1.0-2+b7) ... Setting up libp11-kit-dev:amd64 (0.25.5-3) ... Setting up libbz2-dev:amd64 (1.0.8-6) ... Setting up libnghttp2-dev:amd64 (1.64.0-1.1) ... Setting up libprotobuf32t64:amd64 (3.21.12-11) ... Setting up libboost1.83-dev:amd64 (1.83.0-4.2) ... Setting up libncurses-dev:amd64 (6.5+20250216-2) ... Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ... Setting up libpcre2-dev:amd64 (10.45-1) ... Setting up libxrender1:amd64 (1:0.9.12-1) ... Setting up libssw-dev:amd64 (1.1-15+b2) ... Setting up libssl3t64:amd64 (3.5.0-2) ... Setting up libboost-program-options1.83-dev:amd64 (1.83.0-4.2) ... Setting up libx11-dev:amd64 (2:1.8.12-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b3) ... Setting up libidn2-0:amd64 (2.3.8-2) ... Setting up libselinux1:amd64 (3.8.1-1) ... Setting up libxcb-shm0-dev:amd64 (1.17.0-2+b1) ... Setting up libxml2-dev:amd64 (2.12.7+dfsg+really2.9.14-1) ... Setting up libunbound8:amd64 (1.22.0-1+b1) ... Setting up libgmpxx4ldbl:amd64 (2:6.3.0+dfsg-3) ... Setting up libexpat1-dev:amd64 (2.7.1-1) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libboost-program-options-dev:amd64 (1.83.0.2+b2) ... Setting up uuid-dev:amd64 (2.41-5) ... Setting up comerr-dev:amd64 (2.1-1.47.2-3+b1) ... Setting up libssl-dev:amd64 (3.5.0-2) ... Setting up liblz4-dev:amd64 (1.10.0-4) ... Setting up libsmithwaterman-dev:amd64 (0.0+git20160702.2610e25-12+b2) ... Setting up libxcb-render0-dev:amd64 (1.17.0-2+b1) ... Setting up libidn2-dev:amd64 (2.3.8-2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg1-9) ... Setting up libxext-dev:amd64 (2:1.3.4-1+b3) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libmount1:amd64 (2.41-5) ... Setting up libxslt1.1:amd64 (1.1.35-1.2) ... Setting up libkrb5-3:amd64 (1.21.3-5) ... Setting up libfontconfig1:amd64 (2.15.0-2.3) ... Setting up libssh2-1t64:amd64 (1.11.1-1) ... Setting up libprotoc32t64:amd64 (3.21.12-11) ... Setting up libxrender-dev:amd64 (1:0.9.12-1) ... Setting up libldap2:amd64 (2.6.10+dfsg-1) ... Setting up libgnutls30t64:amd64 (3.8.9-2) ... Setting up libgnutls-openssl27t64:amd64 (3.8.9-2) ... Setting up libblkid-dev:amd64 (2.41-5) ... Setting up libfml-dev:amd64 (0.1+git20221215.85f159e-1) ... Setting up libgmp-dev:amd64 (2:6.3.0+dfsg-3) ... Setting up libxslt1-dev:amd64 (1.1.35-1.2) ... Setting up nettle-dev:amd64 (3.10.1-1) ... Setting up libsm-dev:amd64 (2:1.2.6-1) ... Setting up libselinux1-dev:amd64 (3.8.1-1) ... Setting up libpng-dev:amd64 (1.6.48-1) ... Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ... Setting up libcairo2:amd64 (1.18.4-1+b1) ... Setting up libpsl-dev:amd64 (0.21.2-1.1+b1) ... Setting up libfreetype-dev:amd64 (2.13.3+dfsg-1) ... Setting up libprotobuf-dev:amd64 (3.21.12-11) ... Setting up libglib2.0-0t64:amd64 (2.84.3-1) ... /var/lib/dpkg/info/libglib2.0-0t64:amd64.postinst: 37: /usr/lib/x86_64-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0t64:amd64.postinst: 38: /usr/lib/x86_64-linux-gnu/glib-2.0/gio-querymodules: Exec format error Setting up libgnutls-dane0t64:amd64 (3.8.9-2) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libldap-dev:amd64 (2.6.10+dfsg-1) ... Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ... Setting up libelf-dev:amd64 (0.192-4) ... Setting up libssh2-1-dev:amd64 (1.11.1-1) ... Setting up libprotoc-dev:amd64 (3.21.12-11) ... Setting up libcairo-gobject2:amd64 (1.18.4-1+b1) ... Setting up libmount-dev:amd64 (2.41-5) ... Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ... Setting up libgnutls28-dev:amd64 (3.8.9-2) ... Setting up libcairo-script-interpreter2:amd64 (1.18.4-1+b1) ... Setting up libgio-2.0-dev:amd64 (2.84.3-1) ... Setting up libcurl4t64:amd64 (8.14.1-2) ... Setting up libgirepository-2.0-0:amd64 (2.84.3-1) ... Setting up libfontconfig-dev:amd64 (2.15.0-2.3) ... Setting up libraptor2-0:amd64 (2.0.16-6) ... Setting up libcurl3t64-gnutls:amd64 (8.14.1-2) ... Setting up libngtcp2-crypto-gnutls-dev:amd64 (1.11.0-1) ... Setting up librasqal3t64:amd64 (0.9.33-2.1+b2) ... Setting up librdf0t64:amd64 (1.0.17-4+b1) ... Setting up libdw-dev:amd64 (0.192-4) ... Setting up libgssrpc4t64:amd64 (1.21.3-5) ... Setting up librtmp-dev:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhts3t64:amd64 (1.21+ds-1) ... Setting up libkadm5clnt-mit12:amd64 (1.21.3-5) ... Setting up girepository-tools:amd64 (2.84.3-1) ... Setting up libkdb5-10t64:amd64 (1.21.3-5) ... Setting up libglib2.0-dev:amd64 (2.84.3-1) ... Setting up libkadm5srv-mit12:amd64 (1.21.3-5) ... Setting up libtabixpp0t64:amd64 (1.1.2-2.1+b1) ... Setting up libcairo2-dev:amd64 (1.18.4-1+b1) ... Setting up krb5-multidev:amd64 (1.21.3-5) ... Setting up libkrb5-dev:amd64 (1.21.3-5) ... Setting up libvcflib2:amd64 (1.0.12+dfsg-1) ... Setting up libcurl4-gnutls-dev:amd64 (8.14.1-2) ... Setting up libraptor2-dev:amd64 (2.0.16-6) ... Setting up libhts-dev:amd64 (1.21+ds-1) ... Setting up librasqal3-dev:amd64 (0.9.33-2.1+b2) ... Setting up librdf0-dev:amd64 (1.0.17-4+b1) ... Setting up libtabixpp-dev:amd64 (1.1.2-2.1+b1) ... Setting up libvcflib-dev:amd64 (1.0.12+dfsg-1) ... Processing triggers for libc-bin (2.41-9) ... Processing triggers for base-files (13.8) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docbook-xsl (1.79.2+dfsg-7) ... Setting up sgml-data (2.0.11+nmu1) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docbook-xml (4.5-13) ... Setting up docbook (4.5-11) ... Processing triggers for sgml-base (1.31+nmu1) ... Setting up docbook-to-man (1:2.0.0-48) ... Setting up gtk-doc-tools (1.34.0-2) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in amd64 arm64 ppc64el mips64el s390x riscv64 x32 all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) arm64 (aarch64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.21 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-9 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-amd64-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-amd64-cross_14.2.0-19cross1 linux-libc-dev_6.12.33-1 Package versions: apt_3.0.3 apt-utils_3.0.3 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_13.8 base-passwd_3.6.7 bash_5.2.37-2+b3 bc_1.07.1-4+b1 binutils_2.44-3 binutils-aarch64-linux-gnu_2.44-3 binutils-common_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bison_2:3.8.2+dfsg-1+b2 bsdextrautils_2.41-5 bsdutils_1:2.41-5 build-essential_12.12 bzip2_1.0.8-6 cmake_3.31.6-2 cmake-data_3.31.6-2 comerr-dev_2.1-1.47.2-3+b1 coreutils_9.7-3 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-aarch64-linux-gnu_14.2.0-19 cpp-14-x86-64-linux-gnu_14.2.0-19cross1 cpp-aarch64-linux-gnu_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 cross-exe-wrapper_0.2.6 crossbuild-essential-amd64_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debian-archive-keyring_2025.1 debianutils_5.23.1 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 docbook_4.5-11 docbook-to-man_1:2.0.0-48 docbook-xml_4.5-13 docbook-xsl_1.79.2+dfsg-7 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.15-1+b1 elfutils_0.192-4 fakeroot_1.37.1.2-1 file_1:5.46-5 findutils_4.10.0-3 flex_2.6.4-8.2+b4 fontconfig-config_2.15.0-2.3 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-aarch64-linux-gnu_14.2.0-19 g++-14-x86-64-linux-gnu_14.2.0-19cross1 g++-aarch64-linux-gnu_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gawk_1:5.3.2-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-aarch64-linux-gnu_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-cross-base_14.2.0-19cross1 gcc-14-x86-64-linux-gnu_14.2.0-19cross1 gcc-14-x86-64-linux-gnu-base_14.2.0-19cross1 gcc-aarch64-linux-gnu_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2 gettext-base_0.23.1-2 girepository-tools_2.84.3-1 grep_3.11-4+b1 groff-base_1.23.0-9 gtk-doc-tools_1.34.0-2 gzip_1.13-1 help2man_1.49.3+b1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 jq_1.8.0-1 krb5-multidev_1.21.3-5 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.0.3 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.4-3 libasan8_14.2.0-19 libasan8-amd64-cross_14.2.0-19cross1 libasm1t64_0.192-4 libatomic1_14.2.0-19 libatomic1-amd64-cross_14.2.0-19cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.5-1 libaudit1_1:4.0.5-1 libbackward-cpp-dev_1.6-1 libbinutils_2.44-3 libblkid-dev_2.41-5 libblkid1_2.41-5 libboost-program-options-dev_1.83.0.2+b2 libboost-program-options1.83-dev_1.83.0-4.2 libboost-program-options1.83.0_1.83.0-4.2 libboost1.83-dev_1.83.0-4.2 libbrotli-dev_1.1.0-2+b7 libbrotli1_1.1.0-2+b7 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.41-9 libc-dev-bin_2.41-9 libc6_2.41-9 libc6-amd64-cross_2.41-8cross1 libc6-dev_2.41-9 libc6-dev-amd64-cross_2.41-8cross1 libcairo-gobject2_1.18.4-1+b1 libcairo-script-interpreter2_1.18.4-1+b1 libcairo2_1.18.4-1+b1 libcairo2-dev_1.18.4-1+b1 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-9 libcc1-0_14.2.0-19 libcom-err2_1.47.2-3+b1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libcurl3t64-gnutls_8.14.1-2 libcurl4-gnutls-dev_8.14.1-2 libcurl4t64_8.14.1-2 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.279 libdebhelper-perl_13.24.2 libdebuginfod-common_0.192-4 libdebuginfod1t64_0.192-4 libdeflate-dev_1.23-2 libdeflate0_1.23-2 libdisorder-dev_0.0.2+git20130809.8062ee1-4+b2 libdisorder0_0.0.2+git20130809.8062ee1-4+b2 libdivsufsort-dev_2.0.1-6+b1 libdivsufsort3_2.0.1-6+b1 libdpkg-perl_1.22.21 libdw-dev_0.192-4 libdw1t64_0.192-4 libelf-dev_0.192-4 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.7.1-1 libexpat1-dev_2.7.1-1 libfakeroot_1.37.1.2-1 libfastahack-dev_1.0.0+dfsg-11+b2 libfastahack0_1.0.0+dfsg-11+b2 libffi-dev_3.4.8-2 libffi8_3.4.8-2 libfile-stripnondeterminism-perl_1.14.1-2 libfml-dev_0.1+git20221215.85f159e-1 libfml0_0.1+git20221215.85f159e-1 libfontconfig-dev_2.15.0-2.3 libfontconfig1_2.15.0-2.3 libfreetype-dev_2.13.3+dfsg-1 libfreetype6_2.13.3+dfsg-1 libgcc-14-dev_14.2.0-19 libgcc-14-dev-amd64-cross_14.2.0-19cross1 libgcc-s1_14.2.0-19 libgcc-s1-amd64-cross_14.2.0-19cross1 libgcrypt20_1.11.0-7 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgio-2.0-dev_2.84.3-1 libgio-2.0-dev-bin_2.84.3-1 libgirepository-2.0-0_2.84.3-1 libglib2.0-0t64_2.84.3-1 libglib2.0-bin_2.84.3-1 libglib2.0-data_2.84.3-1 libglib2.0-dev_2.84.3-1 libglib2.0-dev-bin_2.84.3-1 libgmp-dev_2:6.3.0+dfsg-3 libgmp10_2:6.3.0+dfsg-3 libgmpxx4ldbl_2:6.3.0+dfsg-3 libgnutls-dane0t64_3.8.9-2 libgnutls-openssl27t64_3.8.9-2 libgnutls28-dev_3.8.9-2 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgomp1-amd64-cross_14.2.0-19cross1 libgpg-error0_1.51-4 libgprofng0_2.44-3 libgssapi-krb5-2_1.21.3-5 libgssrpc4t64_1.21.3-5 libhogweed6t64_3.10.1-1 libhts-dev_1.21+ds-1 libhts3t64_1.21+ds-1 libhtscodecs2_1.6.1-2 libhwasan0_14.2.0-19 libhwasan0-amd64-cross_14.2.0-19cross1 libice-dev_2:1.1.1-1 libice6_2:1.1.1-1 libicu76_76.1-4 libidn2-0_2.3.8-2 libidn2-dev_2.3.8-2 libisl23_0.27-1 libitm1_14.2.0-19 libitm1-amd64-cross_14.2.0-19cross1 libjansson-dev_2.14-2+b3 libjansson4_2.14-2+b3 libjemalloc-dev_5.3.0-3 libjemalloc2_5.3.0-3 libjq1_1.8.0-1 libjson-c5_0.18+ds-1 libjsoncpp26_1.9.6-3 libk5crypto3_1.21.3-5 libkadm5clnt-mit12_1.21.3-5 libkadm5srv-mit12_1.21.3-5 libkdb5-10t64_1.21.3-5 libkeyutils1_1.6.3-6 libkrb5-3_1.21.3-5 libkrb5-dev_1.21.3-5 libkrb5support0_1.21.3-5 liblastlog2-2_2.41-5 libldap-dev_2.6.10+dfsg-1 libldap2_2.6.10+dfsg-1 liblocale-gettext-perl_1.07-7+b1 liblsan0_14.2.0-19 liblsan0-amd64-cross_14.2.0-19cross1 libltdl7_2.5.4-4 liblz4-1_1.10.0-4 liblz4-dev_1.10.0-4 liblzma-dev_5.8.1-1 liblzma5_5.8.1-1 liblzo2-2_2.10-3+b1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmhash2_0.9.9.9-10 libmount-dev_2.41-5 libmount1_2.41-5 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncurses-dev_6.5+20250216-2 libncurses6_6.5+20250216-2 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.1-1 libnghttp2-14_1.64.0-1.1 libnghttp2-dev_1.64.0-1.1 libnghttp3-9_1.8.0-1 libnghttp3-dev_1.8.0-1 libngtcp2-16_1.11.0-1 libngtcp2-crypto-gnutls-dev_1.11.0-1 libngtcp2-crypto-gnutls8_1.11.0-1 libngtcp2-dev_1.11.0-1 libonig5_6.9.9-1+b1 libosp5_1.5.2-15.2 libp11-kit-dev_0.25.5-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-16-0_10.45-1 libpcre2-32-0_10.45-1 libpcre2-8-0_10.45-1 libpcre2-dev_10.45-1 libpcre2-posix3_10.45-1 libperl5.40_5.40.1-3 libpipeline1_1.5.8-1 libpixman-1-0_0.44.0-3 libpixman-1-dev_0.44.0-3 libpkgconf3_1.8.1-4 libpng-dev_1.6.48-1 libpng16-16t64_1.6.48-1 libproc2-0_2:4.0.4-8 libprotobuf-dev_3.21.12-11 libprotobuf-lite32t64_3.21.12-11 libprotobuf32t64_3.21.12-11 libprotoc-dev_3.21.12-11 libprotoc32t64_3.21.12-11 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libpython3-stdlib_3.13.5-1 libpython3.13-minimal_3.13.5-2 libpython3.13-stdlib_3.13.5-2 libquadmath0_14.2.0-19 libquadmath0-amd64-cross_14.2.0-19cross1 libraptor2-0_2.0.16-6 libraptor2-dev_2.0.16-6 librasqal3-dev_0.9.33-2.1+b2 librasqal3t64_0.9.33-2.1+b2 librdf0-dev_1.0.17-4+b1 librdf0t64_1.0.17-4+b1 libreadline8t64_8.2-6 librhash1_1.4.6-1 librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libselinux1-dev_3.8.1-1 libsepol-dev_3.8.1-1 libsepol2_3.8.1-1 libsframe1_2.44-3 libsimde-dev_0.8.2-3 libsm-dev_2:1.2.6-1 libsm6_2:1.2.6-1 libsmartcols1_2.41-5 libsmithwaterman-dev_0.0+git20160702.2610e25-12+b2 libsmithwaterman0_0.0+git20160702.2610e25-12+b2 libsparsehash-dev_2.0.3-2 libsqlite3-0_3.46.1-6 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.5.0-2 libssl3t64_3.5.0-2 libssw-dev_1.1-15+b2 libssw0_1.1-15+b2 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-amd64-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-amd64-cross_14.2.0-19cross1 libsysprof-capture-4-dev_48.0-2 libsystemd0_257.7-1 libtabixpp-dev_1.1.2-2.1+b1 libtabixpp0t64_1.1.2-2.1+b1 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtext-charwidth-perl_0.04-11+b4 libtext-wrapi18n-perl_0.06-10 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_14.2.0-19 libtsan2-amd64-cross_14.2.0-19cross1 libtsl-hopscotch-map-dev_2.3.1-1 libubsan1_14.2.0-19 libubsan1-amd64-cross_14.2.0-19cross1 libuchardet0_0.0.8-1+b2 libudev1_257.7-1 libunbound8_1.22.0-1+b1 libunistring5_1.3-2 libuuid1_2.41-5 libuv1t64_1.50.0-2 libvcflib-dev_1.0.12+dfsg-1 libvcflib2_1.0.12+dfsg-1 libwfa2-0_2.3.3-4+b2 libwfa2-dev_2.3.3-4+b2 libx11-6_2:1.8.12-1 libx11-data_2:1.8.12-1 libx11-dev_2:1.8.12-1 libxau-dev_1:1.0.11-1 libxau6_1:1.0.11-1 libxcb-render0_1.17.0-2+b1 libxcb-render0-dev_1.17.0-2+b1 libxcb-shm0_1.17.0-2+b1 libxcb-shm0-dev_1.17.0-2+b1 libxcb1_1.17.0-2+b1 libxcb1-dev_1.17.0-2+b1 libxdmcp-dev_1:1.1.5-1 libxdmcp6_1:1.1.5-1 libxext-dev_2:1.3.4-1+b3 libxext6_2:1.3.4-1+b3 libxml2_2.12.7+dfsg+really2.9.14-1 libxml2-dev_2.12.7+dfsg+really2.9.14-1 libxrender-dev_1:0.9.12-1 libxrender1_1:0.9.12-1 libxslt1-dev_1.1.35-1.2 libxslt1.1_1.1.35-1.2 libxxhash-dev_0.8.3-2 libxxhash0_0.8.3-2 libyajl-dev_2.1.0-5+b2 libyajl2_2.1.0-5+b2 libzstd-dev_1.5.7+dfsg-1 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.33-1 linux-libc-dev-amd64-cross_6.12.29-1cross1 login_1:4.16.0-2+really2.41-5 login.defs_1:4.17.4-2 m4_1.4.19-8 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 media-types_13.0.0 native-architecture_0.2.6 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 netbase_6.5 nettle-dev_3.10.1-1 opensp_1.5.2-15.2 openssl-provider-legacy_3.5.0-2 patch_2.8-2 perl_5.40.1-3 perl-base_5.40.1-3 perl-modules-5.40_5.40.1-3 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 procps_2:4.0.4-8 protobuf-compiler_3.21.12-11 python3_3.13.5-1 python3-lxml_5.4.0-1 python3-minimal_3.13.5-1 python3-packaging_25.0-1 python3-pygments_2.18.0+dfsg-2 python3.13_3.13.5-2 python3.13-minimal_3.13.5-2 qemu-user_1:10.0.2+ds-1 rapidjson-dev_1.1.0+dfsg2-7.4 readline-common_8.2-6 rpcsvc-proto_1.4.3-1+b1 rs_20200313-1+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2+b1 sensible-utils_0.0.25 sgml-base_1.31+nmu1 sgml-data_2.0.11+nmu1 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-4 ucf_3.0052 unzip_6.0-29 util-linux_2.41-5 uuid-dev_2.41-5 x11-common_1:7.7+24 x11proto-dev_2024.1-1 xml-core_0.19 xorg-sgml-doctools_1:1.11-1.1 xsltproc_1.1.35-1.2 xtrans-dev_1.4.0-1 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: vg Binary: vg, vg-docs Architecture: amd64 arm64 ppc64el mips64el s390x riscv64 x32 all Version: 1.59.0+ds-0.1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://github.com/vgteam/vg#vg Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/vg Vcs-Git: https://salsa.debian.org/med-team/vg.git Testsuite: autopkgtest Testsuite-Triggers: libvcflib-tools Build-Depends: debhelper-compat (= 13), pv , bsdextrautils | bsdmainutils, zlib1g-dev, rs, libffi-dev, bwa , protobuf-compiler, libprotoc-dev, libprotobuf-dev, libjansson-dev, libbz2-dev, libtinfo6, libncurses-dev, automake, libtool, jq, samtools , unzip, librdf0-dev, cmake, pkgconf, bc, gtk-doc-tools, raptor2-utils , rasqal-utils , bison, flex, gawk, liblz4-dev, liblzma-dev, libcairo2-dev, libpixman-1-dev, libdeflate-dev, libboost-program-options-dev, libjemalloc-dev, libbackward-cpp-dev, elfutils, libdw-dev, libelf-dev, libraptor2-dev, libsparsehash-dev, rapidjson-dev, libfml-dev, libfastahack-dev, fastahack , tabix , xxd , libdivsufsort-dev, libtsl-hopscotch-map-dev, libvcflib-dev (>= 1.0.1), libvcflib-tools , libhts-dev, help2man , python3:any, libsimde-dev, libzstd-dev Build-Depends-Indep: doxygen , graphviz Package-List: vg deb science optional arch=amd64,arm64,ppc64el,mips64el,s390x,riscv64,x32 vg-docs deb doc optional arch=all Checksums-Sha1: 9cceebb48fb18c8618654723085c6aaa4321f386 69705744 vg_1.59.0+ds.orig.tar.xz ddd7d9f6b17fee1f35ac6d3a00de3d7b2e6e491c 117112 vg_1.59.0+ds-0.1.debian.tar.xz Checksums-Sha256: 17e43b91bce35905caf9af98e3b839eeff296af7105c1df818eb81004e6ab144 69705744 vg_1.59.0+ds.orig.tar.xz dfd2b9a5f833d45b9b5632b651de59668380352bc87fa2654b2c2c7acf6c423b 117112 vg_1.59.0+ds-0.1.debian.tar.xz Files: e8aff1b3feff38a4085bf4fbee107ac9 69705744 vg_1.59.0+ds.orig.tar.xz 66279467d1d25d09cdba16f34999a366 117112 vg_1.59.0+ds-0.1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQHEBAEBCgAuFiEEQGIgyLhVKAI3jM5BH1x6i0VWQxQFAmc/WKIQHGJhZ2VAZGVi aWFuLm9yZwAKCRAfXHqLRVZDFHNzDAChrlW8GHppGU1D++m3+LBMHm1tEC4x4pa4 85La0aNeKtBpMqH6R7GpLZJ2HkdjXCqWdKXv60UYX7ughXFl30EQoAT8OM6+gN1w XUfB4XXa/OAvF0grSmIE08PL4nnvGcJlnXd5vW+DF/R8Ll7bIJLtWIn2kHV28uTk 9Faz9DRF4xEtNkVhHBcmlwxott+Zhf2Prt6XyjhUHegCRAd3aAcVrZQl87cR+gIj JpVjf1H9jBG4HhgZ7yxjDQmaosSgAuKf41GAyAl8YbxeLTcIfg3KYQ+LOWMDiRWv bucCUzqPlanDR5OtNk1+ORER59FE83oXSq1tLUMAeP53sE9jhVLFafwjWc5YqsRz XHkA0FGcYdlbcYUkRaXBKPHyvcBXrE81cA4CO9Afa8C3kgDwArYfq5OY08CE++/u 3t9vc+kT+wE9w3x6W81ywxyPchFlTEhjnoAZJ2kUhlVgsGNTT+9wi5Cbq9HFW6Lt 17nlcUFy3vPmaFg8qzO9Kte7eCqp1Q0= =YEjD -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./vg_1.59.0+ds-0.1.dsc: no acceptable signature found dpkg-source: info: extracting vg in /<> dpkg-source: info: unpacking vg_1.59.0+ds.orig.tar.xz dpkg-source: info: unpacking vg_1.59.0+ds-0.1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying avoid_abs_confusion dpkg-source: info: applying gcc-12 dpkg-source: info: applying use_packaged_libdeflate dpkg-source: info: applying use_packaged_jemalloc dpkg-source: info: applying use_packaged_libbackward-cpp dpkg-source: info: applying use_packaged_elfutils dpkg-source: info: applying use_packaged_raptor2 dpkg-source: info: applying no_need_for_snappy dpkg-source: info: applying use_packaged_sparsehash dpkg-source: info: applying use_packaged_fermi-lite dpkg-source: info: applying no_rpath dpkg-source: info: applying no_pg dpkg-source: info: applying use_packaged_fastahack dpkg-source: info: applying hardening_flags dpkg-source: info: applying static dpkg-source: info: applying use_packaged_lz4 dpkg-source: info: applying parallize_better dpkg-source: info: applying use_packaged_libtsl-hopscotch-map-dev dpkg-source: info: applying libVCFH_unneeded dpkg-source: info: applying better_clean dpkg-source: info: applying use_packaged_vcflib dpkg-source: info: applying use_packaged_htslib dpkg-source: info: applying simde dpkg-source: info: applying crossbuild dpkg-source: info: applying python3 Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package vg dpkg-buildpackage: info: source version 1.59.0+ds-0.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Bastian Germann dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' find /<>/include/ -type f -a '!' -name vg_git_version.hpp -delete dh_auto_clean || true make -j1 clean make[2]: Entering directory '/<>' Package libfastahack was not found in the pkg-config search path. Perhaps you should add the directory containing `libfastahack.pc' to the PKG_CONFIG_PATH environment variable Package 'libfastahack', required by 'virtual:world', not found Package cairo was not found in the pkg-config search path. Perhaps you should add the directory containing `cairo.pc' to the PKG_CONFIG_PATH environment variable Package 'cairo', required by 'virtual:world', not found Package 'libzstd', required by 'virtual:world', not found Package 'protobuf', required by 'virtual:world', not found Package 'jansson', required by 'virtual:world', not found Package libfastahack was not found in the pkg-config search path. Perhaps you should add the directory containing `libfastahack.pc' to the PKG_CONFIG_PATH environment variable Package 'libfastahack', required by 'virtual:world', not found Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable Package 'htslib', required by 'virtual:world', not found Package cairo was not found in the pkg-config search path. Perhaps you should add the directory containing `cairo.pc' to the PKG_CONFIG_PATH environment variable Package 'cairo', required by 'virtual:world', not found Package 'libzstd', required by 'virtual:world', not found Package protobuf was not found in the pkg-config search path. Perhaps you should add the directory containing `protobuf.pc' to the PKG_CONFIG_PATH environment variable Package 'protobuf', required by 'virtual:world', not found Package 'jansson', required by 'virtual:world', not found OS is Linux Compiler g++ is assumed to be GCC CXXFLAGS are -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp LDFLAGS are -Wl,-z,relro -Wl,-z,now Makefile:266: OpenMP header omp.h is not available! vg will not be able to build! rm -f -r bin/unittest rm -f -r lib rm -f -r obj/unittest/support rm -f -r obj/unittest rm -f -r obj/subcommand rm -f -r obj/pic/io rm -f -r obj/io rm -f -r obj/pic/algorithms rm -f -r obj/algorithms rm -f -r obj/config rm -f -r obj/pic rm -f -r obj rm -f -r share/ cd ./deps && cd sonLib && make clean make[3]: Entering directory '/<>/deps/sonLib' cd C && make clean make[4]: Entering directory '/<>/deps/sonLib/C' rm -rf ../bin ../lib make[4]: Leaving directory '/<>/deps/sonLib/C' cd externalTools && make clean make[4]: Entering directory '/<>/deps/sonLib/externalTools' cd cutest && make clean make[5]: Entering directory '/<>/deps/sonLib/externalTools/cutest' rm -f ../../lib/cuTest.a ../../lib/CuTest.h make[5]: Leaving directory '/<>/deps/sonLib/externalTools/cutest' cd quicktree_1.1 && make clean make[5]: Entering directory '/<>/deps/sonLib/externalTools/quicktree_1.1' rm -rf ./obj/*.o make[5]: Leaving directory '/<>/deps/sonLib/externalTools/quicktree_1.1' make[4]: Leaving directory '/<>/deps/sonLib/externalTools' rm -f ./bin/sonLib_daemonize.py make[3]: Leaving directory '/<>/deps/sonLib' cd ./deps && cd gcsa2 && make clean make[3]: Entering directory '/<>/deps/gcsa2' Makefile:2: ../sdsl-lite/Make.helper: No such file or directory make[3]: *** No rule to make target '../sdsl-lite/Make.helper'. Stop. make[3]: Leaving directory '/<>/deps/gcsa2' make[2]: *** [Makefile:854: clean] Error 2 make[2]: Leaving directory '/<>' dh_auto_clean: error: make -j1 clean returned exit code 2 make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -Rf ./deps/DYNAMIC/build/CMakeFiles dh_clean make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' dh_autoreconf --sourcedirectory=/<>/deps/vowpal_wabbit make[1]: Leaving directory '/<>' dh_auto_configure -a debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' mkdir -p /<>/debian/help find . -type d -name simde | xargs rm -Rf mkdir -p /<>/debian/vg/usr mkdir -p /<>/debian/vg/usr/lib/vg for SIMD in avx2 avx sse4.1 ssse3 sse3 ; do \ export CXXFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && export CFLAGS="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -m${SIMD}" && \ make clean ; \ dh_auto_build -- SFX=-${SIMD} all test/build_graph bin/shuf ; \ done make[2]: Entering directory '/<>' Package libfastahack was not found in the pkg-config search path. Perhaps you should add the directory containing `libfastahack.pc' to the PKG_CONFIG_PATH environment variable Package 'libfastahack', required by 'virtual:world', not found Package cairo was not found in the pkg-config search path. Perhaps you should add the directory containing `cairo.pc' to the PKG_CONFIG_PATH environment variable Package 'cairo', required by 'virtual:world', not found Package 'libzstd', required by 'virtual:world', not found Package 'protobuf', required by 'virtual:world', not found Package 'jansson', required by 'virtual:world', not found Package libfastahack was not found in the pkg-config search path. Perhaps you should add the directory containing `libfastahack.pc' to the PKG_CONFIG_PATH environment variable Package 'libfastahack', required by 'virtual:world', not found Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable Package 'htslib', required by 'virtual:world', not found Package cairo was not found in the pkg-config search path. Perhaps you should add the directory containing `cairo.pc' to the PKG_CONFIG_PATH environment variable Package 'cairo', required by 'virtual:world', not found Package 'libzstd', required by 'virtual:world', not found Package protobuf was not found in the pkg-config search path. Perhaps you should add the directory containing `protobuf.pc' to the PKG_CONFIG_PATH environment variable Package 'protobuf', required by 'virtual:world', not found Package 'jansson', required by 'virtual:world', not found OS is Linux Compiler g++ is assumed to be GCC CXXFLAGS are -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp LDFLAGS are -Wl,-z,relro -Wl,-z,now Makefile:266: OpenMP header omp.h is not available! vg will not be able to build! rm -f -r bin/unittest rm -f -r lib rm -f -r obj/unittest/support rm -f -r obj/unittest rm -f -r obj/subcommand rm -f -r obj/pic/io rm -f -r obj/io rm -f -r obj/pic/algorithms rm -f -r obj/algorithms rm -f -r obj/config rm -f -r obj/pic rm -f -r obj rm -f -r share/ cd ./deps && cd sonLib && make clean make[3]: Entering directory '/<>/deps/sonLib' cd C && make clean make[4]: Entering directory '/<>/deps/sonLib/C' rm -rf ../bin ../lib make[4]: Leaving directory '/<>/deps/sonLib/C' cd externalTools && make clean make[4]: Entering directory '/<>/deps/sonLib/externalTools' cd cutest && make clean make[5]: Entering directory '/<>/deps/sonLib/externalTools/cutest' rm -f ../../lib/cuTest.a ../../lib/CuTest.h make[5]: Leaving directory '/<>/deps/sonLib/externalTools/cutest' cd quicktree_1.1 && make clean make[5]: Entering directory '/<>/deps/sonLib/externalTools/quicktree_1.1' rm -rf ./obj/*.o make[5]: Leaving directory '/<>/deps/sonLib/externalTools/quicktree_1.1' make[4]: Leaving directory '/<>/deps/sonLib/externalTools' rm -f ./bin/sonLib_daemonize.py make[3]: Leaving directory '/<>/deps/sonLib' cd ./deps && cd gcsa2 && make clean make[3]: Entering directory '/<>/deps/gcsa2' Makefile:2: ../sdsl-lite/Make.helper: No such file or directory make[3]: *** No rule to make target '../sdsl-lite/Make.helper'. Stop. make[3]: Leaving directory '/<>/deps/gcsa2' make[2]: *** [Makefile:854: clean] Error 2 make[2]: Leaving directory '/<>' make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc SFX=-avx2 all test/build_graph bin/shuf make[2]: Entering directory '/<>' OS is Linux Compiler x86_64-linux-gnu-g++ is assumed to be GCC CXXFLAGS are -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp LDFLAGS are -Wl,-z,relro -Wl,-z,now . ./source_me.sh && cd deps/sdsl-lite && BUILD_PORTABLE=1 CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp" ./install.sh /<> Library will be installed in '/<>' WARNING: .git/hooks directory does not exists. The pre-commit hook is not installed. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Compiler is recent enough to support C++14. -- Performing Test HAVE_GCC_STD=C__14__WALL__WEXTRA__DNDEBUG -- Performing Test HAVE_GCC_STD=C__14__WALL__WEXTRA__DNDEBUG - Success -- Performing Test HAVE_GCC_O3__FFAST_MATH__FUNROLL_LOOPS -- Performing Test HAVE_GCC_O3__FFAST_MATH__FUNROLL_LOOPS - Success -- Performing Test HAVE_CXA_DEMANGLE -- Performing Test HAVE_CXA_DEMANGLE - Success -- Compiler supports DEMANGLE. -- Performing Test HAVE_GCC_DHAVE_CXA_DEMANGLE -- Performing Test HAVE_GCC_DHAVE_CXA_DEMANGLE - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) CMake Warning at CMakeLists.txt:102 (message): git not found. Cloning of submodules will not work. -- Looking for C++ include cstdio -- Looking for C++ include cstdio - found -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (4.5s) -- Generating done (0.6s) -- Build files have been written to: /<>/deps/sdsl-lite/build make[3]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 sdsl make[4]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 8 make -f CMakeFiles/Makefile2 lib/CMakeFiles/sdsl.dir/all make[5]: Entering directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/depend make[6]: Entering directory '/<>/deps/sdsl-lite/build' cd /<>/deps/sdsl-lite/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/sdsl-lite /<>/deps/sdsl-lite/lib /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build/lib /<>/deps/sdsl-lite/build/lib/CMakeFiles/sdsl.dir/DependInfo.cmake "--color=" make[6]: Leaving directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/build make[6]: Entering directory '/<>/deps/sdsl-lite/build' [ 0%] Building CXX object lib/CMakeFiles/sdsl.dir/bits.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/bits.cpp.o -MF CMakeFiles/sdsl.dir/bits.cpp.o.d -o CMakeFiles/sdsl.dir/bits.cpp.o -c /<>/deps/sdsl-lite/lib/bits.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o -MF CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o.d -o CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o -c /<>/deps/sdsl-lite/lib/bp_support_algorithm.cpp In file included from /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:24, from /<>/deps/sdsl-lite/build/lib/../include/sdsl/bp_support_algorithm.hpp:24, from /<>/deps/sdsl-lite/lib/bp_support_algorithm.cpp:1: In static member function ‘static void sdsl::bits::write_int(uint64_t*, uint64_t, uint8_t, uint8_t)’, inlined from ‘static void sdsl::memory_manager::resize(t_vec&, typename t_vec::size_type) [with t_vec = sdsl::int_vector<0>]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/memory_management.hpp:364:36, inlined from ‘void sdsl::int_vector< >::bit_resize(size_type) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:1358:27, inlined from ‘void sdsl::int_vector< >::resize(size_type) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:380:23, inlined from ‘sdsl::int_vector< >::int_vector(size_type, value_type, uint8_t) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:1285:11, inlined from ‘sdsl::excess::impl::impl()’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/bp_support_algorithm.hpp:114:46: /<>/deps/sdsl-lite/build/lib/../include/sdsl/bits.hpp:448:9: warning: ‘*temp’ may be used uninitialized [-Wmaybe-uninitialized] 448 | *word &= | ^~~~~ [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o -MF CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o.d -o CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o -c /<>/deps/sdsl-lite/lib/coder_elias_delta.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o -MF CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o.d -o CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o -c /<>/deps/sdsl-lite/lib/coder_elias_gamma.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o -MF CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o.d -o CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o -c /<>/deps/sdsl-lite/lib/coder_fibonacci.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/config.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/config.cpp.o -MF CMakeFiles/sdsl.dir/config.cpp.o.d -o CMakeFiles/sdsl.dir/config.cpp.o -c /<>/deps/sdsl-lite/lib/config.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_config.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_config.cpp.o -MF CMakeFiles/sdsl.dir/construct_config.cpp.o.d -o CMakeFiles/sdsl.dir/construct_config.cpp.o -c /<>/deps/sdsl-lite/lib/construct_config.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o -MF CMakeFiles/sdsl.dir/construct_isa.cpp.o.d -o CMakeFiles/sdsl.dir/construct_isa.cpp.o -c /<>/deps/sdsl-lite/lib/construct_isa.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o -MF CMakeFiles/sdsl.dir/construct_lcp.cpp.o.d -o CMakeFiles/sdsl.dir/construct_lcp.cpp.o -c /<>/deps/sdsl-lite/lib/construct_lcp.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o -MF CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o.d -o CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o -c /<>/deps/sdsl-lite/lib/construct_lcp_helper.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o -MF CMakeFiles/sdsl.dir/construct_sa.cpp.o.d -o CMakeFiles/sdsl.dir/construct_sa.cpp.o -c /<>/deps/sdsl-lite/lib/construct_sa.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o -MF CMakeFiles/sdsl.dir/construct_sa_se.cpp.o.d -o CMakeFiles/sdsl.dir/construct_sa_se.cpp.o -c /<>/deps/sdsl-lite/lib/construct_sa_se.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o -MF CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o.d -o CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o -c /<>/deps/sdsl-lite/lib/csa_alphabet_strategy.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/io.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/io.cpp.o -MF CMakeFiles/sdsl.dir/io.cpp.o.d -o CMakeFiles/sdsl.dir/io.cpp.o -c /<>/deps/sdsl-lite/lib/io.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o -MF CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o.d -o CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o -c /<>/deps/sdsl-lite/lib/lcp_support_tree.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o -MF CMakeFiles/sdsl.dir/louds_tree.cpp.o.d -o CMakeFiles/sdsl.dir/louds_tree.cpp.o -c /<>/deps/sdsl-lite/lib/louds_tree.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/memory_management.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/memory_management.cpp.o -MF CMakeFiles/sdsl.dir/memory_management.cpp.o.d -o CMakeFiles/sdsl.dir/memory_management.cpp.o -c /<>/deps/sdsl-lite/lib/memory_management.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o -MF CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o.d -o CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o -c /<>/deps/sdsl-lite/lib/nn_dict_dynamic.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_filebuf.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/ram_filebuf.cpp.o -MF CMakeFiles/sdsl.dir/ram_filebuf.cpp.o.d -o CMakeFiles/sdsl.dir/ram_filebuf.cpp.o -c /<>/deps/sdsl-lite/lib/ram_filebuf.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_fs.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/ram_fs.cpp.o -MF CMakeFiles/sdsl.dir/ram_fs.cpp.o.d -o CMakeFiles/sdsl.dir/ram_fs.cpp.o -c /<>/deps/sdsl-lite/lib/ram_fs.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o -MF CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o.d -o CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o -c /<>/deps/sdsl-lite/lib/rrr_vector_15.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/sd_vector.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/sd_vector.cpp.o -MF CMakeFiles/sdsl.dir/sd_vector.cpp.o.d -o CMakeFiles/sdsl.dir/sd_vector.cpp.o -c /<>/deps/sdsl-lite/lib/sd_vector.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/sfstream.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/sfstream.cpp.o -MF CMakeFiles/sdsl.dir/sfstream.cpp.o.d -o CMakeFiles/sdsl.dir/sfstream.cpp.o -c /<>/deps/sdsl-lite/lib/sfstream.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/simple_sds.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/simple_sds.cpp.o -MF CMakeFiles/sdsl.dir/simple_sds.cpp.o.d -o CMakeFiles/sdsl.dir/simple_sds.cpp.o -c /<>/deps/sdsl-lite/lib/simple_sds.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/structure_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/structure_tree.cpp.o -MF CMakeFiles/sdsl.dir/structure_tree.cpp.o.d -o CMakeFiles/sdsl.dir/structure_tree.cpp.o -c /<>/deps/sdsl-lite/lib/structure_tree.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/uint128_t.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/uint128_t.cpp.o -MF CMakeFiles/sdsl.dir/uint128_t.cpp.o.d -o CMakeFiles/sdsl.dir/uint128_t.cpp.o -c /<>/deps/sdsl-lite/lib/uint128_t.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/uint256_t.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/uint256_t.cpp.o -MF CMakeFiles/sdsl.dir/uint256_t.cpp.o.d -o CMakeFiles/sdsl.dir/uint256_t.cpp.o -c /<>/deps/sdsl-lite/lib/uint256_t.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/util.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/util.cpp.o -MF CMakeFiles/sdsl.dir/util.cpp.o.d -o CMakeFiles/sdsl.dir/util.cpp.o -c /<>/deps/sdsl-lite/lib/util.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/wt_helper.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/wt_helper.cpp.o -MF CMakeFiles/sdsl.dir/wt_helper.cpp.o.d -o CMakeFiles/sdsl.dir/wt_helper.cpp.o -c /<>/deps/sdsl-lite/lib/wt_helper.cpp [100%] Linking CXX static library libsdsl.a cd /<>/deps/sdsl-lite/build/lib && /usr/bin/cmake -P CMakeFiles/sdsl.dir/cmake_clean_target.cmake cd /<>/deps/sdsl-lite/build/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/sdsl.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libsdsl.a CMakeFiles/sdsl.dir/bits.cpp.o CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o CMakeFiles/sdsl.dir/config.cpp.o CMakeFiles/sdsl.dir/construct_config.cpp.o CMakeFiles/sdsl.dir/construct_isa.cpp.o CMakeFiles/sdsl.dir/construct_lcp.cpp.o CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o CMakeFiles/sdsl.dir/construct_sa.cpp.o CMakeFiles/sdsl.dir/construct_sa_se.cpp.o CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o CMakeFiles/sdsl.dir/io.cpp.o CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o CMakeFiles/sdsl.dir/louds_tree.cpp.o CMakeFiles/sdsl.dir/memory_management.cpp.o CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o CMakeFiles/sdsl.dir/ram_filebuf.cpp.o CMakeFiles/sdsl.dir/ram_fs.cpp.o CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o CMakeFiles/sdsl.dir/sd_vector.cpp.o CMakeFiles/sdsl.dir/sfstream.cpp.o CMakeFiles/sdsl.dir/simple_sds.cpp.o CMakeFiles/sdsl.dir/structure_tree.cpp.o CMakeFiles/sdsl.dir/uint128_t.cpp.o CMakeFiles/sdsl.dir/uint256_t.cpp.o CMakeFiles/sdsl.dir/util.cpp.o CMakeFiles/sdsl.dir/wt_helper.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libsdsl.a make[6]: Leaving directory '/<>/deps/sdsl-lite/build' [100%] Built target sdsl make[5]: Leaving directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make[4]: Leaving directory '/<>/deps/sdsl-lite/build' make[3]: Leaving directory '/<>/deps/sdsl-lite/build' Removing old files rm -rf '/<>/include/sdsl/*' rm -f '/<>/lib/libsdsl*' make[3]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles /<>/deps/sdsl-lite/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/depend make[5]: Entering directory '/<>/deps/sdsl-lite/build' cd /<>/deps/sdsl-lite/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/sdsl-lite /<>/deps/sdsl-lite/lib /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build/lib /<>/deps/sdsl-lite/build/lib/CMakeFiles/sdsl.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/build make[5]: Entering directory '/<>/deps/sdsl-lite/build' make[5]: Nothing to be done for 'lib/CMakeFiles/sdsl.dir/build'. make[5]: Leaving directory '/<>/deps/sdsl-lite/build' [100%] Built target sdsl make[4]: Leaving directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/sdsl-lite/build' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/sdsl-lite/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<>/lib/pkgconfig/sdsl-lite.pc -- Installing: /<>/include/sdsl/bit_vector_il.hpp -- Installing: /<>/include/sdsl/bit_vectors.hpp -- Installing: /<>/include/sdsl/bits.hpp -- Installing: /<>/include/sdsl/bp_support.hpp -- Installing: /<>/include/sdsl/bp_support_algorithm.hpp -- Installing: /<>/include/sdsl/bp_support_g.hpp -- Installing: /<>/include/sdsl/bp_support_gg.hpp -- Installing: /<>/include/sdsl/bp_support_sada.hpp -- Installing: /<>/include/sdsl/coder.hpp -- Installing: /<>/include/sdsl/coder_comma.hpp -- Installing: /<>/include/sdsl/coder_elias_delta.hpp -- Installing: /<>/include/sdsl/coder_elias_gamma.hpp -- Installing: /<>/include/sdsl/coder_fibonacci.hpp -- Installing: /<>/include/sdsl/config.hpp -- Installing: /<>/include/sdsl/construct.hpp -- Installing: /<>/include/sdsl/construct_bwt.hpp -- Installing: /<>/include/sdsl/construct_config.hpp -- Installing: /<>/include/sdsl/construct_isa.hpp -- Installing: /<>/include/sdsl/construct_lcp.hpp -- Installing: /<>/include/sdsl/construct_lcp_helper.hpp -- Installing: /<>/include/sdsl/construct_sa.hpp -- Installing: /<>/include/sdsl/construct_sa_se.hpp -- Installing: /<>/include/sdsl/csa_alphabet_strategy.hpp -- Installing: /<>/include/sdsl/csa_bitcompressed.hpp -- Installing: /<>/include/sdsl/csa_sada.hpp -- Installing: /<>/include/sdsl/csa_sampling_strategy.hpp -- Installing: /<>/include/sdsl/csa_wt.hpp -- Installing: /<>/include/sdsl/cst_fully.hpp -- Installing: /<>/include/sdsl/cst_iterators.hpp -- Installing: /<>/include/sdsl/cst_sada.hpp -- Installing: /<>/include/sdsl/cst_sct3.hpp -- Installing: /<>/include/sdsl/dac_vector.hpp -- Installing: /<>/include/sdsl/enc_vector.hpp -- Installing: /<>/include/sdsl/fast_cache.hpp -- Installing: /<>/include/sdsl/hyb_vector.hpp -- Installing: /<>/include/sdsl/int_vector.hpp -- Installing: /<>/include/sdsl/int_vector_buffer.hpp -- Installing: /<>/include/sdsl/int_vector_io_wrappers.hpp -- Installing: /<>/include/sdsl/int_vector_mapper.hpp -- Installing: /<>/include/sdsl/inv_perm_support.hpp -- Installing: /<>/include/sdsl/io.hpp -- Installing: /<>/include/sdsl/iterators.hpp -- Installing: /<>/include/sdsl/k2_treap.hpp -- Installing: /<>/include/sdsl/k2_treap_algorithm.hpp -- Installing: /<>/include/sdsl/k2_treap_helper.hpp -- Installing: /<>/include/sdsl/k2_tree.hpp -- Installing: /<>/include/sdsl/k2_tree_helper.hpp -- Installing: /<>/include/sdsl/lcp.hpp -- Installing: /<>/include/sdsl/lcp_bitcompressed.hpp -- Installing: /<>/include/sdsl/lcp_byte.hpp -- Installing: /<>/include/sdsl/lcp_dac.hpp -- Installing: /<>/include/sdsl/lcp_support_sada.hpp -- Installing: /<>/include/sdsl/lcp_support_tree.hpp -- Installing: /<>/include/sdsl/lcp_support_tree2.hpp -- Installing: /<>/include/sdsl/lcp_vlc.hpp -- Installing: /<>/include/sdsl/lcp_wt.hpp -- Installing: /<>/include/sdsl/louds_tree.hpp -- Installing: /<>/include/sdsl/memory_management.hpp -- Installing: /<>/include/sdsl/nearest_neighbour_dictionary.hpp -- Installing: /<>/include/sdsl/nn_dict_dynamic.hpp -- Installing: /<>/include/sdsl/qsufsort.hpp -- Installing: /<>/include/sdsl/ram_filebuf.hpp -- Installing: /<>/include/sdsl/ram_fs.hpp -- Installing: /<>/include/sdsl/rank_support.hpp -- Installing: /<>/include/sdsl/rank_support_scan.hpp -- Installing: /<>/include/sdsl/rank_support_v.hpp -- Installing: /<>/include/sdsl/rank_support_v5.hpp -- Installing: /<>/include/sdsl/raster_img.hpp -- Installing: /<>/include/sdsl/rle_vector.hpp -- Installing: /<>/include/sdsl/rmq_succinct_sada.hpp -- Installing: /<>/include/sdsl/rmq_succinct_sct.hpp -- Installing: /<>/include/sdsl/rmq_support.hpp -- Installing: /<>/include/sdsl/rmq_support_sparse_table.hpp -- Installing: /<>/include/sdsl/rrr_helper.hpp -- Installing: /<>/include/sdsl/rrr_vector.hpp -- Installing: /<>/include/sdsl/rrr_vector_15.hpp -- Installing: /<>/include/sdsl/sd_vector.hpp -- Installing: /<>/include/sdsl/sdsl_concepts.hpp -- Installing: /<>/include/sdsl/select_support.hpp -- Installing: /<>/include/sdsl/select_support_mcl.hpp -- Installing: /<>/include/sdsl/select_support_scan.hpp -- Installing: /<>/include/sdsl/sfstream.hpp -- Installing: /<>/include/sdsl/simple_sds.hpp -- Installing: /<>/include/sdsl/sorted_int_stack.hpp -- Installing: /<>/include/sdsl/sorted_multi_stack_support.hpp -- Installing: /<>/include/sdsl/sorted_stack_support.hpp -- Installing: /<>/include/sdsl/structure_tree.hpp -- Installing: /<>/include/sdsl/suffix_array_algorithm.hpp -- Installing: /<>/include/sdsl/suffix_array_helper.hpp -- Installing: /<>/include/sdsl/suffix_arrays.hpp -- Installing: /<>/include/sdsl/suffix_tree_algorithm.hpp -- Installing: /<>/include/sdsl/suffix_tree_helper.hpp -- Installing: /<>/include/sdsl/suffix_trees.hpp -- Installing: /<>/include/sdsl/uint128_t.hpp -- Installing: /<>/include/sdsl/uint256_t.hpp -- Installing: /<>/include/sdsl/uintx_t.hpp -- Installing: /<>/include/sdsl/util.hpp -- Installing: /<>/include/sdsl/vectors.hpp -- Installing: /<>/include/sdsl/vlc_vector.hpp -- Installing: /<>/include/sdsl/wavelet_trees.hpp -- Installing: /<>/include/sdsl/wm_int.hpp -- Installing: /<>/include/sdsl/wt_algorithm.hpp -- Installing: /<>/include/sdsl/wt_ap.hpp -- Installing: /<>/include/sdsl/wt_blcd.hpp -- Installing: /<>/include/sdsl/wt_gmr.hpp -- Installing: /<>/include/sdsl/wt_helper.hpp -- Installing: /<>/include/sdsl/wt_huff.hpp -- Installing: /<>/include/sdsl/wt_hutu.hpp -- Installing: /<>/include/sdsl/wt_int.hpp -- Installing: /<>/include/sdsl/wt_pc.hpp -- Installing: /<>/include/sdsl/wt_rlmn.hpp -- Installing: /<>/lib/libsdsl.a make[3]: Leaving directory '/<>/deps/sdsl-lite/build' SUCCESS: sdsl was installed successfully! The sdsl include files are located in '/<>/include'. The library files are located in '/<>/lib'. Sample programs can be found in the examples-directory. Tests in the test-directory A cheat sheet in the extras/cheatsheet-directory. Have fun! Makefile:511: warning: pattern recipe did not update peer target 'lib/libdivsufsort64.a'. Makefile:511: warning: pattern recipe did not update peer target 'lib/libdivsufsort.a'. . ./source_me.sh && cd deps/ssw/src && make && ar rs /<>/lib/libssw.a ssw.o ssw_cpp.o && cp ssw_cpp.h ssw.h /<>/include make[3]: Entering directory '/<>/deps/ssw/src' x86_64-linux-gnu-gcc -c -o ssw.o ssw.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wall -pipe -O3 -I. x86_64-linux-gnu-gcc -o ssw_test ssw.o main.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wall -pipe -O3 -I. -lm -lz x86_64-linux-gnu-gcc -o example_c ssw.o example.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wall -pipe -O3 -I. -lm -lz x86_64-linux-gnu-g++ -c -o ssw_cpp.o ssw_cpp.cpp -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wall -pipe -O3 -I. cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ x86_64-linux-gnu-g++ -o example_cpp example.cpp ssw.o ssw_cpp.o -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wall -pipe -O3 -I. -lm -lz cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ x86_64-linux-gnu-gcc -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wall -pipe -O3 -I. -fPIC -shared -o libssw.so ssw.c make[3]: Leaving directory '/<>/deps/ssw/src' ar: creating /<>/lib/libssw.a . ./source_me.sh && cp -r deps/gcsa2/include/gcsa /<>/include/ && cd deps/gcsa2 && make directories && make lib/libgcsa2.a && mv lib/libgcsa2.a /<>/lib make[3]: Entering directory '/<>/deps/gcsa2' mkdir -p bin mkdir -p lib mkdir -p obj make[3]: Leaving directory '/<>/deps/gcsa2' make[3]: Entering directory '/<>/deps/gcsa2' /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/dbg.o src/dbg.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/files.o src/files.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gcsa.o src/gcsa.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/lcp.o src/lcp.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/path_graph.o src/path_graph.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/support.o src/support.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp ar rcs lib/libgcsa2.a obj/algorithms.o obj/dbg.o obj/files.o obj/gcsa.o obj/internal.o obj/lcp.o obj/path_graph.o obj/support.o obj/utils.o make[3]: Leaving directory '/<>/deps/gcsa2' . ./source_me.sh && cp -r deps/gbwt/include/gbwt /<>/include/ && cd deps/gbwt && make clean && make && mv lib/libgbwt.a /<>/lib make[3]: Entering directory '/<>/deps/gbwt' rm -rf bin lib obj rm -f *.o *.a build_gbwt build_ri merge_gbwt benchmark metadata_tool remove_seq cd tests && make clean make[4]: Entering directory '/<>/deps/gbwt/tests' rm -f test_bwtmerge test_metadata test_queries test_support test_variants *.o make[4]: Leaving directory '/<>/deps/gbwt/tests' make[3]: Leaving directory '/<>/deps/gbwt' make[3]: Entering directory '/<>/deps/gbwt' mkdir -p bin mkdir -p lib mkdir -p obj /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/bwtmerge.o src/bwtmerge.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/cached_gbwt.o src/cached_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/dynamic_gbwt.o src/dynamic_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/fast_locate.o src/fast_locate.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/files.o src/files.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbwt.o src/gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/metadata.o src/metadata.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/support.o src/support.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/test.o src/test.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/variants.o src/variants.cpp ar rcs lib/libgbwt.a obj/algorithms.o obj/bwtmerge.o obj/cached_gbwt.o obj/dynamic_gbwt.o obj/fast_locate.o obj/files.o obj/gbwt.o obj/internal.o obj/metadata.o obj/support.o obj/test.o obj/utils.o obj/variants.o /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/build_gbwt.o src/build_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/build_gbwt obj/build_gbwt.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/build_ri.o src/build_ri.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/build_ri obj/build_ri.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/merge_gbwt.o src/merge_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/merge_gbwt obj/merge_gbwt.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/benchmark.o src/benchmark.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/benchmark obj/benchmark.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/metadata_tool.o src/metadata_tool.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/metadata_tool obj/metadata_tool.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/remove_seq.o src/remove_seq.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/remove_seq obj/remove_seq.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 rm obj/build_ri.o obj/metadata_tool.o obj/benchmark.o obj/merge_gbwt.o obj/remove_seq.o obj/build_gbwt.o make[3]: Leaving directory '/<>/deps/gbwt' . ./source_me.sh && cd deps/libhandlegraph && rm -Rf build CMakeCache.txt CMakeFiles && mkdir build && cd build && CXXFLAGS="-std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2" cmake -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_PREFIX=/<> -DCMAKE_INSTALL_LIBDIR=lib .. && make && make install -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done libhandlegraph is root project or external_project -- Configuring done (1.5s) -- Generating done (0.1s) -- Build files have been written to: /<>/deps/libhandlegraph/build make[3]: Entering directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -S/<>/deps/libhandlegraph -B/<>/deps/libhandlegraph/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles /<>/deps/libhandlegraph/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_objs.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [ 2%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/deletable_handle_graph.cpp [ 5%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o -c /<>/deps/libhandlegraph/src/dfs.cpp [ 8%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/handle_graph.cpp [ 11%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/mutable_handle_graph.cpp [ 14%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o -c /<>/deps/libhandlegraph/src/path_metadata.cpp [ 17%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o -c /<>/deps/libhandlegraph/src/mutable_path_metadata.cpp [ 20%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/path_handle_graph.cpp [ 22%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/path_position_handle_graph.cpp [ 25%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/mutable_path_handle_graph.cpp [ 28%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/ranked_handle_graph.cpp [ 31%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o -c /<>/deps/libhandlegraph/src/serializable.cpp [ 34%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o -c /<>/deps/libhandlegraph/src/snarl_decomposition.cpp [ 37%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o -c /<>/deps/libhandlegraph/src/trivially_serializable.cpp [ 40%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/types.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/types.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/types.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o -c /<>/deps/libhandlegraph/src/types.cpp [ 42%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o -c /<>/deps/libhandlegraph/src/copy_graph.cpp [ 45%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o -c /<>/deps/libhandlegraph/src/append_graph.cpp [ 48%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o -c /<>/deps/libhandlegraph/src/are_equivalent.cpp [ 51%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o -c /<>/deps/libhandlegraph/src/find_tips.cpp [ 54%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o -c /<>/deps/libhandlegraph/src/topological_sort.cpp [ 57%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o -c /<>/deps/libhandlegraph/src/apply_orientations.cpp [ 60%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o -c /<>/deps/libhandlegraph/src/is_single_stranded.cpp [ 62%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o -c /<>/deps/libhandlegraph/src/count_walks.cpp [ 65%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o -c /<>/deps/libhandlegraph/src/eades_algorithm.cpp [ 68%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o -c /<>/deps/libhandlegraph/src/dagify.cpp In file included from /usr/x86_64-linux-gnu/include/c++/14/x86_64-linux-gnu/bits/c++allocator.h:33, from /usr/x86_64-linux-gnu/include/c++/14/bits/allocator.h:46, from /usr/x86_64-linux-gnu/include/c++/14/vector:63, from /<>/deps/libhandlegraph/src/dagify.cpp:8: In member function ‘void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = long int]’, inlined from ‘static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = long int]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/alloc_traits.h:550:23, inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:389:19, inlined from ‘std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:368:15, inlined from ‘std::vector<_Tp, _Alloc>::~vector() [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:738:7, inlined from ‘std::unordered_map handlegraph::algorithms::dagify(const handlegraph::HandleGraph*, handlegraph::MutableHandleGraph*, size_t)’ at /<>/deps/libhandlegraph/src/dagify.cpp:445:5: /usr/x86_64-linux-gnu/include/c++/14/bits/new_allocator.h:172:33: warning: ‘void operator delete(void*, std::size_t)’ called on pointer ‘’ with nonzero offset [1, 9223372036854775800] [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In member function ‘_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long int]’, inlined from ‘static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long int]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/alloc_traits.h:515:28, inlined from ‘std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:380:33, inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:398:44, inlined from ‘std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:334:26, inlined from ‘std::vector<_Tp, _Alloc>::vector(size_type, const value_type&, const allocator_type&) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:571:47, inlined from ‘std::unordered_map handlegraph::algorithms::dagify(const handlegraph::HandleGraph*, handlegraph::MutableHandleGraph*, size_t)’ at /<>/deps/libhandlegraph/src/dagify.cpp:327:85: /usr/x86_64-linux-gnu/include/c++/14/bits/new_allocator.h:151:55: note: returned from ‘void* operator new(std::size_t)’ 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ [ 71%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o -c /<>/deps/libhandlegraph/src/strongly_connected_components.cpp [ 74%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o -c /<>/deps/libhandlegraph/src/find_shortest_paths.cpp [ 77%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o -c /<>/deps/libhandlegraph/src/dijkstra.cpp [ 80%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o -c /<>/deps/libhandlegraph/src/is_acyclic.cpp [ 82%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o -c /<>/deps/libhandlegraph/src/reverse_complement.cpp [ 85%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o -c /<>/deps/libhandlegraph/src/split_strands.cpp [ 88%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o -c /<>/deps/libhandlegraph/src/chop.cpp [ 91%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o -c /<>/deps/libhandlegraph/src/weakly_connected_components.cpp [ 94%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o -c /<>/deps/libhandlegraph/src/extend.cpp make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 94%] Built target handlegraph_objs make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_shared.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [ 97%] Linking CXX shared library libhandlegraph.so /usr/bin/cmake -E cmake_link_script CMakeFiles/handlegraph_shared.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wl,--dependency-file=CMakeFiles/handlegraph_shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libhandlegraph.so -o libhandlegraph.so CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 97%] Built target handlegraph_shared make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [100%] Linking CXX static library libhandlegraph.a /usr/bin/cmake -P CMakeFiles/handlegraph_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/handlegraph_static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhandlegraph.a CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhandlegraph.a make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [100%] Built target handlegraph_static make[4]: Leaving directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles 0 make[3]: Leaving directory '/<>/deps/libhandlegraph/build' make[3]: Entering directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -S/<>/deps/libhandlegraph -B/<>/deps/libhandlegraph/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles /<>/deps/libhandlegraph/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_objs.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_objs.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 94%] Built target handlegraph_objs make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_shared.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_shared.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 97%] Built target handlegraph_shared make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_static.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [100%] Built target handlegraph_static make[4]: Leaving directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/libhandlegraph/build' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/libhandlegraph/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /<>/lib/libhandlegraph.so -- Installing: /<>/lib/libhandlegraph.a -- Installing: /<>/include/handlegraph -- Installing: /<>/include/handlegraph/serializable.hpp -- Installing: /<>/include/handlegraph/util.hpp -- Installing: /<>/include/handlegraph/types.hpp -- Installing: /<>/include/handlegraph/trivially_serializable.hpp -- Installing: /<>/include/handlegraph/snarl_decomposition.hpp -- Installing: /<>/include/handlegraph/serializable_handle_graph.hpp -- Installing: /<>/include/handlegraph/path_position_handle_graph.hpp -- Installing: /<>/include/handlegraph/path_metadata.hpp -- Installing: /<>/include/handlegraph/path_handle_graph.hpp -- Installing: /<>/include/handlegraph/named_node_back_translation.hpp -- Installing: /<>/include/handlegraph/mutable_path_mutable_handle_graph.hpp -- Installing: /<>/include/handlegraph/mutable_path_metadata.hpp -- Installing: /<>/include/handlegraph/mutable_path_handle_graph.hpp -- Installing: /<>/include/handlegraph/mutable_path_deletable_handle_graph.hpp -- Installing: /<>/include/handlegraph/mutable_handle_graph.hpp -- Installing: /<>/include/handlegraph/iteratee.hpp -- Installing: /<>/include/handlegraph/handle_graph.hpp -- Installing: /<>/include/handlegraph/expanding_overlay_graph.hpp -- Installing: /<>/include/handlegraph/deletable_handle_graph.hpp -- Installing: /<>/include/handlegraph/buildable_snarl_decomposition.hpp -- Installing: /<>/include/handlegraph/algorithms -- Installing: /<>/include/handlegraph/algorithms/weakly_connected_components.hpp -- Installing: /<>/include/handlegraph/algorithms/topological_sort.hpp -- Installing: /<>/include/handlegraph/algorithms/strongly_connected_components.hpp -- Installing: /<>/include/handlegraph/algorithms/split_strands.hpp -- Installing: /<>/include/handlegraph/algorithms/reverse_complement.hpp -- Installing: /<>/include/handlegraph/algorithms/is_single_stranded.hpp -- Installing: /<>/include/handlegraph/algorithms/is_acyclic.hpp -- Installing: /<>/include/handlegraph/algorithms/internal -- Installing: /<>/include/handlegraph/algorithms/internal/dfs.hpp -- Installing: /<>/include/handlegraph/algorithms/find_tips.hpp -- Installing: /<>/include/handlegraph/algorithms/find_shortest_paths.hpp -- Installing: /<>/include/handlegraph/algorithms/extend.hpp -- Installing: /<>/include/handlegraph/algorithms/eades_algorithm.hpp -- Installing: /<>/include/handlegraph/algorithms/dijkstra.hpp -- Installing: /<>/include/handlegraph/algorithms/dagify.hpp -- Installing: /<>/include/handlegraph/algorithms/count_walks.hpp -- Installing: /<>/include/handlegraph/algorithms/copy_graph.hpp -- Installing: /<>/include/handlegraph/algorithms/chop.hpp -- Installing: /<>/include/handlegraph/algorithms/are_equivalent.hpp -- Installing: /<>/include/handlegraph/algorithms/apply_orientations.hpp -- Installing: /<>/include/handlegraph/algorithms/append_graph.hpp -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphTargets.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphTargets-noconfig.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphConfig.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphConfigVersion.cmake make[3]: Leaving directory '/<>/deps/libhandlegraph/build' . ./source_me.sh && cp -r deps/gbwtgraph/include/gbwtgraph /<>/include/ && cd deps/gbwtgraph && make clean && make && mv lib/libgbwtgraph.a /<>/lib make[3]: Entering directory '/<>/deps/gbwtgraph' rm -rf bin lib obj rm -f *.o *.a gfa2gbwt cd tests && make clean make[4]: Entering directory '/<>/deps/gbwtgraph/tests' rm -f test_utils test_gbwtgraph test_cached_gbwtgraph test_gfa test_gbz test_minimizer test_index test_algorithms test_path_cover *.o make[4]: Leaving directory '/<>/deps/gbwtgraph/tests' make[3]: Leaving directory '/<>/deps/gbwtgraph' make[3]: Entering directory '/<>/deps/gbwtgraph' mkdir -p bin mkdir -p lib mkdir -p obj /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/cached_gbwtgraph.o src/cached_gbwtgraph.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbwtgraph.o src/gbwtgraph.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbz.o src/gbz.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gfa.o src/gfa.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/minimizer.o src/minimizer.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/path_cover.o src/path_cover.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp ar rcs lib/libgbwtgraph.a obj/algorithms.o obj/cached_gbwtgraph.o obj/gbwtgraph.o obj/gbz.o obj/gfa.o obj/internal.o obj/minimizer.o obj/path_cover.o obj/utils.o /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gfa2gbwt.o src/gfa2gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/gfa2gbwt obj/gfa2gbwt.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbz_stats.o src/gbz_stats.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/gbz_stats obj/gbz_stats.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/kmer_freq.o src/kmer_freq.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/kmer_freq obj/kmer_freq.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 rm obj/kmer_freq.o obj/gbz_stats.o obj/gfa2gbwt.o make[3]: Leaving directory '/<>/deps/gbwtgraph' . ./source_me.sh && cd deps/kff-cpp-api && rm -Rf build && mkdir build && cd build && cmake .. && make && cp kff_io.hpp /<>/include && mv libkff.a /<>/lib -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.5s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/kff-cpp-api/build make[3]: Entering directory '/<>/deps/kff-cpp-api/build' [ 16%] Building CXX object CMakeFiles/kff.dir/kff_io.cpp.o [ 33%] Linking CXX static library libkff.a [ 33%] Built target kff [ 50%] Building CXX object CMakeFiles/kff_example.dir/main.cpp.o [ 66%] Linking CXX executable kff_example [ 66%] Built target kff_example [ 83%] Building CXX object benchmarks/CMakeFiles/reader_bench.dir/reader.cpp.o [100%] Linking CXX executable reader_bench [100%] Built target reader_bench make[3]: Leaving directory '/<>/deps/kff-cpp-api/build' . ./source_me.sh && cd deps/gssw && make && cp lib/libgssw.a /<>/lib/ && cp src/gssw.h /<>/include/ make[3]: Entering directory '/<>/deps/gssw' x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wall -O3 -g -c -o obj/gssw.o src/gssw.c src/gssw.c: In function ‘gssw_graph_print’: src/gssw.c:1947:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1947 | fprintf(stdout, "GRAPH // node %llu %u %s\n", n->id, n->len, n->seq); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c:1951:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1951 | fprintf(stdout, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c:1951:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1951 | fprintf(stdout, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c: In function ‘gssw_graph_print_stderr’: src/gssw.c:1963:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1963 | fprintf(stderr, "GRAPH // node %llu %u %s\n", n->id, n->len, n->seq); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c:1967:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1967 | fprintf(stderr, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c:1967:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1967 | fprintf(stderr, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c: In function ‘gssw_graph_print_score_matrices’: src/gssw.c:1978:31: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1978 | fprintf(out, "node %llu\n", n->id); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_print_graph_cigar’: src/gssw.c:3623:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 3623 | fprintf(out, "%llu[", nc->node->id); | ~~~^ ~~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_create_seed_byte’: src/gssw.c:5095:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 5095 | fprintf(stderr, "failing is node %llu\n", prev[k]->id); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_create_seed_word’: src/gssw.c:5130:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 5130 | fprintf(stderr, "failing is node %llu\n", prev[k]->id); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_sw_software_byte’: src/gssw.c:277:5: warning: ‘__builtin_memcpy’ writing between 18446744071562067984 and 18446744073709551600 bytes into a region of size 9223372036854775807 [-Wstringop-overflow=] 277 | memcpy(scratch, to_unswizzle, size); | ^ In function ‘unswizzle_byte’, inlined from ‘gssw_sw_software_byte’ at src/gssw.c:405:9: src/gssw.c:271:35: note: destination object of size 9223372036854775807 allocated by ‘malloc’ 271 | uint8_t* scratch = (uint8_t*) malloc(size * sizeof(uint8_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/gssw.c: In function ‘gssw_sw_software_word’: src/gssw.c:1117:5: warning: ‘__builtin_memcpy’ writing between 18446744069414584336 and 18446744073709551600 bytes into a region of size 9223372036854775807 [-Wstringop-overflow=] 1117 | memcpy(scratch, to_unswizzle, size * sizeof(int16_t)); | ^ In function ‘unswizzle_word’, inlined from ‘gssw_sw_software_word’ at src/gssw.c:1249:9: src/gssw.c:1111:35: note: destination object of size 9223372036854775807 allocated by ‘malloc’ 1111 | int16_t* scratch = (int16_t*) malloc(size * sizeof(int16_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/gssw.c: In function ‘gssw_node_create’: src/gssw.c:4975:5: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 4975 | strncpy(n->seq, seq, len); n->seq[len] = 0; | ^ src/gssw.c:4971:19: note: length computed here 4971 | int32_t len = strlen(seq); | ^~~~~~~~~~~ # Make dest directory x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wall -O3 -g src/example.c -o bin/gssw_example obj/gssw.o -lm -lz x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wall -O3 -g src/example_adj.c -o bin/gssw_example_adj obj/gssw.o -lm -lz x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wall -O3 -g src/gssw_test.c -o bin/gssw_test obj/gssw.o -lm -lz ar rvs lib/libgssw.a obj/gssw.o ar: creating lib/libgssw.a a - obj/gssw.o make[3]: Leaving directory '/<>/deps/gssw' . ./source_me.sh && cd ./deps/sonLib && kyotoTycoonLib="" make && cp lib/sonLib.a /<>/lib/libsonlib.a && mkdir -p /<>/include/sonLib && cp lib/*.h /<>/include/sonLib make[3]: Entering directory '/<>/deps/sonLib' cd externalTools && make all make[4]: Entering directory '/<>/deps/sonLib/externalTools' cd cutest && make all make[5]: Entering directory '/<>/deps/sonLib/externalTools/cutest' x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -c CuTest.c ar rc cuTest.a *.o ranlib cuTest.a rm -f *.o mv cuTest.a ../../lib/ cp CuTest.h ../../lib/ make[5]: Leaving directory '/<>/deps/sonLib/externalTools/cutest' cd quicktree_1.1 && make all CC="x86_64-linux-gnu-gcc -std=c99" make[5]: Entering directory '/<>/deps/sonLib/externalTools/quicktree_1.1' x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/align.o ./src/align.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/cluster.o ./src/cluster.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/distancemat.o ./src/distancemat.c ./src/distancemat.c: In function ‘read_phylip_DistanceMatrix’: ./src/distancemat.c:390:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 390 | fscanf( handle, "%s", identifier ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/distancemat.c:397:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 397 | fscanf( handle, "%lf", &dist); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/options.o ./src/options.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/util.o ./src/util.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/sequence.o ./src/sequence.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/quicktree.o ./src/quicktree.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/buildtree.o ./src/buildtree.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/tree.o ./src/tree.c ./src/tree.c: In function ‘read_newhampshire_Tnode’: ./src/tree.c:393:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 393 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:406:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 406 | fscanf( handle, "%1s", &c); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:417:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 417 | fscanf( handle, "%1s", &c); /* should be ) */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:420:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 420 | fscanf( handle, "%1s", &c); /* should be : */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c: In function ‘read_newhampshire_Tree’: ./src/tree.c:468:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 468 | fscanf( handle, "("); | ^~~~~~~~~~~~~~~~~~~~ ./src/tree.c:475:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 475 | fscanf( handle, "%1s", &c ); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:484:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 484 | fscanf( handle, "%1s", &c ); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:493:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 493 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:496:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 496 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -g -o bin/quicktree ./obj/align.o ./obj/cluster.o ./obj/distancemat.o ./obj/options.o ./obj/util.o ./obj/sequence.o ./obj/quicktree.o ./obj/buildtree.o ./obj/tree.o -lm make[5]: Leaving directory '/<>/deps/sonLib/externalTools/quicktree_1.1' make[4]: Leaving directory '/<>/deps/sonLib/externalTools' cd C && make all make[4]: Entering directory '/<>/deps/sonLib/C' cp inc/avl.h ../lib/avl.h.tmp mv ../lib/avl.h.tmp ../lib/avl.h cp inc/bioioC.h ../lib/bioioC.h.tmp mv ../lib/bioioC.h.tmp ../lib/bioioC.h cp inc/commonC.h ../lib/commonC.h.tmp mv ../lib/commonC.h.tmp ../lib/commonC.h cp inc/fastCMaths.h ../lib/fastCMaths.h.tmp mv ../lib/fastCMaths.h.tmp ../lib/fastCMaths.h cp inc/hashTableC.h ../lib/hashTableC.h.tmp mv ../lib/hashTableC.h.tmp ../lib/hashTableC.h cp inc/hashTableC_itr.h ../lib/hashTableC_itr.h.tmp mv ../lib/hashTableC_itr.h.tmp ../lib/hashTableC_itr.h cp inc/hashTablePrivateC.h ../lib/hashTablePrivateC.h.tmp mv ../lib/hashTablePrivateC.h.tmp ../lib/hashTablePrivateC.h cp inc/jsmn.h ../lib/jsmn.h.tmp mv ../lib/jsmn.h.tmp ../lib/jsmn.h cp inc/pairwiseAlignment.h ../lib/pairwiseAlignment.h.tmp mv ../lib/pairwiseAlignment.h.tmp ../lib/pairwiseAlignment.h cp inc/sonLib.h ../lib/sonLib.h.tmp mv ../lib/sonLib.h.tmp ../lib/sonLib.h cp inc/sonLibAlign.h ../lib/sonLibAlign.h.tmp mv ../lib/sonLibAlign.h.tmp ../lib/sonLibAlign.h cp inc/sonLibCache.h ../lib/sonLibCache.h.tmp mv ../lib/sonLibCache.h.tmp ../lib/sonLibCache.h cp inc/sonLibCommon.h ../lib/sonLibCommon.h.tmp mv ../lib/sonLibCommon.h.tmp ../lib/sonLibCommon.h cp inc/sonLibCompression.h ../lib/sonLibCompression.h.tmp mv ../lib/sonLibCompression.h.tmp ../lib/sonLibCompression.h cp inc/sonLibConnectivity.h ../lib/sonLibConnectivity.h.tmp mv ../lib/sonLibConnectivity.h.tmp ../lib/sonLibConnectivity.h cp inc/sonLibEulerTour.h ../lib/sonLibEulerTour.h.tmp mv ../lib/sonLibEulerTour.h.tmp ../lib/sonLibEulerTour.h cp inc/sonLibExcept.h ../lib/sonLibExcept.h.tmp mv ../lib/sonLibExcept.h.tmp ../lib/sonLibExcept.h cp inc/sonLibFile.h ../lib/sonLibFile.h.tmp mv ../lib/sonLibFile.h.tmp ../lib/sonLibFile.h cp inc/sonLibHash.h ../lib/sonLibHash.h.tmp mv ../lib/sonLibHash.h.tmp ../lib/sonLibHash.h cp inc/sonLibKVDatabase.h ../lib/sonLibKVDatabase.h.tmp mv ../lib/sonLibKVDatabase.h.tmp ../lib/sonLibKVDatabase.h cp inc/sonLibKVDatabaseConf.h ../lib/sonLibKVDatabaseConf.h.tmp mv ../lib/sonLibKVDatabaseConf.h.tmp ../lib/sonLibKVDatabaseConf.h cp inc/sonLibList.h ../lib/sonLibList.h.tmp mv ../lib/sonLibList.h.tmp ../lib/sonLibList.h cp inc/sonLibMath.h ../lib/sonLibMath.h.tmp mv ../lib/sonLibMath.h.tmp ../lib/sonLibMath.h cp inc/sonLibNaiveConnectivity.h ../lib/sonLibNaiveConnectivity.h.tmp mv ../lib/sonLibNaiveConnectivity.h.tmp ../lib/sonLibNaiveConnectivity.h cp inc/sonLibRandom.h ../lib/sonLibRandom.h.tmp mv ../lib/sonLibRandom.h.tmp ../lib/sonLibRandom.h cp inc/sonLibSet.h ../lib/sonLibSet.h.tmp mv ../lib/sonLibSet.h.tmp ../lib/sonLibSet.h cp inc/sonLibSortedSet.h ../lib/sonLibSortedSet.h.tmp mv ../lib/sonLibSortedSet.h.tmp ../lib/sonLibSortedSet.h cp inc/sonLibString.h ../lib/sonLibString.h.tmp mv ../lib/sonLibString.h.tmp ../lib/sonLibString.h cp inc/sonLibTreap.h ../lib/sonLibTreap.h.tmp mv ../lib/sonLibTreap.h.tmp ../lib/sonLibTreap.h cp inc/sonLibTree.h ../lib/sonLibTree.h.tmp mv ../lib/sonLibTree.h.tmp ../lib/sonLibTree.h cp inc/sonLibTuples.h ../lib/sonLibTuples.h.tmp mv ../lib/sonLibTuples.h.tmp ../lib/sonLibTuples.h cp inc/sonLibTypes.h ../lib/sonLibTypes.h.tmp mv ../lib/sonLibTypes.h.tmp ../lib/sonLibTypes.h cp inc/stGraph.h ../lib/stGraph.h.tmp mv ../lib/stGraph.h.tmp ../lib/stGraph.h cp inc/stJson.h ../lib/stJson.h.tmp mv ../lib/stJson.h.tmp ../lib/stJson.h cp inc/stMatrix.h ../lib/stMatrix.h.tmp mv ../lib/stMatrix.h.tmp ../lib/stMatrix.h cp inc/stPhylogeny.h ../lib/stPhylogeny.h.tmp mv ../lib/stPhylogeny.h.tmp ../lib/stPhylogeny.h cp inc/stPosetAlignment.h ../lib/stPosetAlignment.h.tmp mv ../lib/stPosetAlignment.h.tmp ../lib/stPosetAlignment.h cp inc/stSafeC.h ../lib/stSafeC.h.tmp mv ../lib/stSafeC.h.tmp ../lib/stSafeC.h cp inc/stSpimapLayer.h ../lib/stSpimapLayer.h.tmp mv ../lib/stSpimapLayer.h.tmp ../lib/stSpimapLayer.h cp inc/stThreadPool.h ../lib/stThreadPool.h.tmp mv ../lib/stThreadPool.h.tmp ../lib/stThreadPool.h cp inc/stUnionFind.h ../lib/stUnionFind.h.tmp mv ../lib/stUnionFind.h.tmp ../lib/stUnionFind.h x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -I inc -I ../lib/ -c impl/*.c cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/bioioC.c: In function ‘parseInt’: impl/bioioC.c:265:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 265 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:265:15: note: did you mean to dereference the pointer? 265 | while(*string != '\0' && !isspace(**string)) { | ^ impl/bioioC.c: In function ‘parseFloat’: impl/bioioC.c:286:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 286 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:286:15: note: did you mean to dereference the pointer? 286 | while(*string != '\0' && !isspace(**string)) { | ^ impl/bioioC.c: In function ‘parseString’: impl/bioioC.c:307:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 307 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:307:15: note: did you mean to dereference the pointer? 307 | while(*string != '\0' && !isspace(**string)) { | ^ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibCompression.c: In function ‘stCompression_compress’: impl/sonLibCompression.c:37:9: warning: ‘LZ4_compress’ is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] 37 | int64_t bytesWritten = LZ4_compress(((char*)data) + inputOffset, buffer+(outputOffset+1), subChunk ? ST_LZ4_CHUNK_SIZE : sizeInBytes - inputOffset); | ^~~~~~~ In file included from /usr/include/lz4hc.h:43, from impl/sonLibCompression.c:15: /usr/include/lz4.h:806:75: note: declared here 806 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize); | ^~~~~~~~~~~~ impl/sonLibCompression.c: In function ‘stCompression_decompress’: impl/sonLibCompression.c:60:13: warning: ‘LZ4_uncompress’ is deprecated: use LZ4_decompress_fast() instead [-Wdeprecated-declarations] 60 | int64_t bytesRead = LZ4_uncompress(((char *)compressedData)+inputOffset, | ^~~~~~~ /usr/include/lz4.h:814:68: note: declared here 814 | LZ4_DEPRECATED("use LZ4_decompress_fast() instead") LZ4LIB_API int LZ4_uncompress (const char* source, char* dest, int outputSize); | ^~~~~~~~~~~~~~ impl/sonLibCompression.c:72:17: warning: ‘LZ4_uncompress_unknownOutputSize’ is deprecated: use LZ4_decompress_safe() instead [-Wdeprecated-declarations] 72 | int64_t bytesWritten = LZ4_uncompress_unknownOutputSize(((char *)compressedData)+inputOffset, | ^~~~~~~ /usr/include/lz4.h:815:68: note: declared here 815 | LZ4_DEPRECATED("use LZ4_decompress_safe() instead") LZ4LIB_API int LZ4_uncompress_unknownOutputSize (const char* source, char* dest, int isize, int maxOutputSize); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibConnectivity.c: In function ‘stConnectivity_addEdge’: impl/sonLibConnectivity.c:248:33: warning: pointer ‘component1’ may be used after ‘free’ [-Wuse-after-free] 248 | connectivity->mergeCallback(connectivity->mergeExtraData, component1, component2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘stConnectedComponent_destruct’, inlined from ‘stConnectivity_addEdge’ at impl/sonLibConnectivity.c:238:3: impl/sonLibConnectivity.c:608:9: note: call to ‘free’ here 608 | free(comp); | ^~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibTreap.c: In function ‘stTreap_remove’: impl/sonLibTreap.c:331:18: warning: pointer ‘rmnode’ used after ‘free’ [-Wuse-after-free] 331 | stTreap *p = rmnode->parent; | ^ impl/sonLibTreap.c:329:9: note: call to ‘free’ here 329 | free(rmnode); | ^~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C x86_64-linux-gnu-g++ -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall -funroll-loops -DNDEBUG -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wl,-z,relro -Wl,-z,now -I inc -I ../lib/ -c impl/*.cpp ar rc sonLib.a *.o ../externalTools/quicktree_1.1/obj/buildtree.o ../externalTools/quicktree_1.1/obj/cluster.o ../externalTools/quicktree_1.1/obj/distancemat.o ../externalTools/quicktree_1.1/obj/options.o ../externalTools/quicktree_1.1/obj/sequence.o ../externalTools/quicktree_1.1/obj/tree.o ../externalTools/quicktree_1.1/obj/util.o ranlib sonLib.a rm *.o mv sonLib.a ../lib/ x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -I inc -I ../lib -o ../bin/sonLibTests.tmp tests/allTests.c tests/sonLib*.c tests/st* ../lib/sonLib.a ../lib/cuTest.a -lz -lm -lm -lstdc++ -lpthread -llz4 mv ../bin/sonLibTests.tmp ../bin/sonLibTests x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -I inc -I ../lib -I tests -o ../bin/sonLib_kvDatabaseTest.tmp tests/kvDatabaseTest.c tests/kvDatabaseTestCommon.c ../lib/sonLib.a ../lib/cuTest.a -lz -lm -lm mv ../bin/sonLib_kvDatabaseTest.tmp ../bin/sonLib_kvDatabaseTest x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -I inc -I ../lib -o ../bin/sonLib_cigarTest.tmp tests/cigarsTest.c ../lib/sonLib.a -lm mv ../bin/sonLib_cigarTest.tmp ../bin/sonLib_cigarTest x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -I inc -I ../lib -o ../bin/sonLib_fastaCTest.tmp tests/fastaCTest.c ../lib/sonLib.a -lm mv ../bin/sonLib_fastaCTest.tmp ../bin/sonLib_fastaCTest make[4]: Leaving directory '/<>/deps/sonLib/C' cp sonLib_daemonize.py ./bin/sonLib_daemonize.py chmod +x ./bin/sonLib_daemonize.py make[3]: Leaving directory '/<>/deps/sonLib' . ./source_me.sh && cd ./deps/pinchesAndCacti && make && cd /<>/./deps/sonLib && cp lib/stPinchesAndCacti.a /<>/lib/libpinchesandcacti.a && cp lib/3EdgeConnected.a /<>/lib/lib3edgeconnected.a && mkdir -p /<>/include/sonLib && cp lib/*.h /<>/include/sonLib make[3]: Entering directory '/<>/deps/pinchesAndCacti' cd externalTools && make all make[4]: Entering directory '/<>/deps/pinchesAndCacti/externalTools' cd threeEdgeConnected && make all make[5]: Entering directory '/<>/deps/pinchesAndCacti/externalTools/threeEdgeConnected' x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I ../..//../sonLib/lib/ -c impl/*.c ar rc 3EdgeConnected.a *.o ranlib 3EdgeConnected.a rm *.o mv 3EdgeConnected.a ../..//../sonLib/lib/ cp inc/*.h ../..//../sonLib/lib/ x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -I inc -I../..//../sonLib/lib -o ../..//../sonLib/bin/3EdgeTests tests/*.c ../..//../sonLib/lib/3EdgeConnected.a ../..//../sonLib/lib/sonLib.a ../..//../sonLib/lib/cuTest.a -lz -lm make[5]: Leaving directory '/<>/deps/pinchesAndCacti/externalTools/threeEdgeConnected' make[4]: Leaving directory '/<>/deps/pinchesAndCacti/externalTools' x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -I inc -I .//../sonLib/lib/ -c impl/*.c ar rc stPinchesAndCacti.a *.o ranlib stPinchesAndCacti.a rm *.o mv stPinchesAndCacti.a .//../sonLib/lib/ cp inc/*.h .//../sonLib/lib/ x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -Wl,-z,relro -Wl,-z,now -I inc -I impl -I.//../sonLib/lib -o .//../sonLib/bin/stPinchesAndCactiTests tests/*.c impl/*.c .//../sonLib/lib/sonLib.a .//../sonLib/lib/cuTest.a -lz -lm .//../sonLib/lib/3EdgeConnected.a make[3]: Leaving directory '/<>/deps/pinchesAndCacti' . ./source_me.sh && cd deps/sublinear-Li-Stephens && make clean && INCLUDE_FLAGS="-I/<>/include" make libs && cp lib/libsublinearLS.a /<>/lib/ && mkdir -p /<>/include/sublinearLS && cp src/*.hpp /<>/include/sublinearLS/ make[3]: Entering directory '/<>/deps/sublinear-Li-Stephens' rm -f /<>/deps/sublinear-Li-Stephens/bin/* /<>/deps/sublinear-Li-Stephens/obj/*.o /<>/deps/sublinear-Li-Stephens/obj/test/*.o /<>/deps/sublinear-Li-Stephens/lib/* make[3]: Leaving directory '/<>/deps/sublinear-Li-Stephens' make[3]: Entering directory '/<>/deps/sublinear-Li-Stephens' if [ ! -d /<>/deps/sublinear-Li-Stephens/obj ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/obj; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/obj/test ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/obj/test; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/bin ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/bin; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/lib ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/lib; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/deps ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/deps; fi x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/math.cpp -o /<>/deps/sublinear-Li-Stephens/obj/math.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/reference.cpp -o /<>/deps/sublinear-Li-Stephens/obj/reference.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/probability.cpp -o /<>/deps/sublinear-Li-Stephens/obj/probability.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/input_haplotype.cpp -o /<>/deps/sublinear-Li-Stephens/obj/input_haplotype.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/delay_multiplier.cpp -o /<>/deps/sublinear-Li-Stephens/obj/delay_multiplier.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/DP_map.cpp -o /<>/deps/sublinear-Li-Stephens/obj/DP_map.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/penalty_set.cpp -o /<>/deps/sublinear-Li-Stephens/obj/penalty_set.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++11 -g -Wno-error=return-type -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/allele.cpp -o /<>/deps/sublinear-Li-Stephens/obj/allele.o /<>/deps/sublinear-Li-Stephens/src/allele.cpp: In function ‘char allele::to_char(alleleValue)’: /<>/deps/sublinear-Li-Stephens/src/allele.cpp:20:1: warning: control reaches end of non-void function [-Wreturn-type] 20 | } | ^ x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/row_set.cpp -o /<>/deps/sublinear-Li-Stephens/obj/row_set.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++11 -g -Wno-error=return-type -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_node.o /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp: In member function ‘size_t haplotypeStateNode::node_to_child_index(const haplotypeStateNode*) const’: /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp:96:1: warning: control reaches end of non-void function [-Wreturn-type] 96 | } | ^ x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_state_tree.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_tree.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_manager.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_manager.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/set_of_extensions.cpp -o /<>/deps/sublinear-Li-Stephens/obj/set_of_extensions.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/reference_sequence.cpp -o /<>/deps/sublinear-Li-Stephens/obj/reference_sequence.o ar rc /<>/deps/sublinear-Li-Stephens/lib/libsublinearLS.a /<>/deps/sublinear-Li-Stephens/obj/math.o /<>/deps/sublinear-Li-Stephens/obj/reference.o /<>/deps/sublinear-Li-Stephens/obj/probability.o /<>/deps/sublinear-Li-Stephens/obj/input_haplotype.o /<>/deps/sublinear-Li-Stephens/obj/delay_multiplier.o /<>/deps/sublinear-Li-Stephens/obj/DP_map.o /<>/deps/sublinear-Li-Stephens/obj/penalty_set.o /<>/deps/sublinear-Li-Stephens/obj/allele.o /<>/deps/sublinear-Li-Stephens/obj/row_set.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_node.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_tree.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_manager.o /<>/deps/sublinear-Li-Stephens/obj/set_of_extensions.o /<>/deps/sublinear-Li-Stephens/obj/reference_sequence.o ranlib /<>/deps/sublinear-Li-Stephens/lib/libsublinearLS.a make[3]: Leaving directory '/<>/deps/sublinear-Li-Stephens' . ./source_me.sh && cd deps/structures && make clean && make lib/libstructures.a && cp lib/libstructures.a /<>/lib/ && cp -r src/include/structures /<>/include/ make[3]: Entering directory '/<>/deps/structures' if [ ! -d bin ]; then mkdir -p bin; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -d lib ]; then mkdir -p lib; fi find bin obj lib -type f -delete make[3]: Leaving directory '/<>/deps/structures' make[3]: Entering directory '/<>/deps/structures' if [ ! -d bin ]; then mkdir -p bin; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -d lib ]; then mkdir -p lib; fi x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -c src/union_find.cpp -o obj/union_find.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -c src/suffix_tree.cpp -o obj/suffix_tree.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -c src/stable_double.cpp -o obj/stable_double.o rm -f lib/libstructures.a ar rs lib/libstructures.a obj/union_find.o obj/suffix_tree.o obj/stable_double.o ar: creating lib/libstructures.a make[3]: Leaving directory '/<>/deps/structures' rm -f lib/cleaned_old_protobuf* rm -f lib/libproto* lib/pkgconfig/protobuf* bin/protoc rm -Rf include/google/protobuf deps/protobuf touch lib/cleaned_old_protobuf_v003 rm -f /<>/include/vg.pb.h /<>/include/vg/vg.pb.h rm -Rf /<>/include/vg/io/ . ./source_me.sh && export CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp" && export LDFLAGS="-Wl,-z,relro -Wl,-z,now -L/<>/lib" && cd deps/libvgio && rm -Rf CMakeCache.txt CMakeFiles *.cmake install_manifest.txt *.pb.cc *.pb.h *.a && rm -rf build-vg && mkdir build-vg && cd build-vg && PKG_CONFIG_PATH=/<>/lib/pkgconfig: cmake -DCMAKE_CXX_STANDARD=14 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_PREFIX_PATH="/usr;/" -DCMAKE_INSTALL_PREFIX=/<> -DCMAKE_INSTALL_LIBDIR=lib .. && make clean && VERBOSE=1 make && make install -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") Building libvgio for C++ 14 -- Found PkgConfig: /usr/bin/x86_64-linux-gnu-pkg-config (found version "1.8.1") -- Could NOT find Protobuf (missing: Protobuf_DIR) No installed Protobuf has registered itself with CMake. -- Found Protobuf: /usr/lib/x86_64-linux-gnu/libprotobuf.so (found version "3.21.12") Found Protobuf using FindProtobuf.cmake -- Found Threads: TRUE Using real Threads library -- Checking for module 'htslib' -- Found htslib, version 1.21 -- Checking for module 'jansson' -- Found jansson, version 2.14 Using installed libhandlegraph -- Configuring done (2.6s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/libvgio/build-vg make[3]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/Makefile2 clean make[4]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/link_target.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/vgio.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/vgio_static.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/test_libvgio.dir/build.make CMakeFiles/test_libvgio.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/test_libvgio.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make[4]: Leaving directory '/<>/deps/libvgio/build-vg' make[3]: Leaving directory '/<>/deps/libvgio/build-vg' make[3]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -S/<>/deps/libvgio -B/<>/deps/libvgio/build-vg --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles /<>/deps/libvgio/build-vg//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/link_target.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E create_symlink . vg make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 0%] Built target link_target make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 2%] Running cpp protocol buffer compiler on deps/vg.proto /usr/bin/protoc --cpp_out :/<>/deps/libvgio/build-vg -I /<>/deps/libvgio/deps /<>/deps/libvgio/deps/vg.proto cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 5%] Building CXX object CMakeFiles/vgio.dir/vg.pb.cc.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/vg.pb.cc.o -MF CMakeFiles/vgio.dir/vg.pb.cc.o.d -o CMakeFiles/vgio.dir/vg.pb.cc.o -c /<>/deps/libvgio/build-vg/vg.pb.cc [ 8%] Building CXX object CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o -MF CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o.d -o CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o -c /<>/deps/libvgio/src/alignment_emitter.cpp [ 11%] Building CXX object CMakeFiles/vgio.dir/src/alignment_io.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/alignment_io.cpp.o -MF CMakeFiles/vgio.dir/src/alignment_io.cpp.o.d -o CMakeFiles/vgio.dir/src/alignment_io.cpp.o -c /<>/deps/libvgio/src/alignment_io.cpp [ 14%] Building CXX object CMakeFiles/vgio.dir/src/basic_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/basic_stream.cpp.o -MF CMakeFiles/vgio.dir/src/basic_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/basic_stream.cpp.o -c /<>/deps/libvgio/src/basic_stream.cpp [ 17%] Building CXX object CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o -MF CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_input_stream.cpp [ 20%] Building CXX object CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o -MF CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_output_stream.cpp [ 23%] Building CXX object CMakeFiles/vgio.dir/src/edit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/edit.cpp.o -MF CMakeFiles/vgio.dir/src/edit.cpp.o.d -o CMakeFiles/vgio.dir/src/edit.cpp.o -c /<>/deps/libvgio/src/edit.cpp [ 26%] Building CXX object CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o -MF CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o.d -o CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o -c /<>/deps/libvgio/src/hfile_cppstream.cpp [ 29%] Building CXX object CMakeFiles/vgio.dir/src/json2pb.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/json2pb.cpp.o -MF CMakeFiles/vgio.dir/src/json2pb.cpp.o.d -o CMakeFiles/vgio.dir/src/json2pb.cpp.o -c /<>/deps/libvgio/src/json2pb.cpp [ 32%] Building CXX object CMakeFiles/vgio.dir/src/message_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/message_emitter.cpp.o -MF CMakeFiles/vgio.dir/src/message_emitter.cpp.o.d -o CMakeFiles/vgio.dir/src/message_emitter.cpp.o -c /<>/deps/libvgio/src/message_emitter.cpp [ 35%] Building CXX object CMakeFiles/vgio.dir/src/message_iterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/message_iterator.cpp.o -MF CMakeFiles/vgio.dir/src/message_iterator.cpp.o.d -o CMakeFiles/vgio.dir/src/message_iterator.cpp.o -c /<>/deps/libvgio/src/message_iterator.cpp [ 38%] Building CXX object CMakeFiles/vgio.dir/src/registry.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/registry.cpp.o -MF CMakeFiles/vgio.dir/src/registry.cpp.o.d -o CMakeFiles/vgio.dir/src/registry.cpp.o -c /<>/deps/libvgio/src/registry.cpp [ 41%] Building CXX object CMakeFiles/vgio.dir/src/stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/stream.cpp.o -MF CMakeFiles/vgio.dir/src/stream.cpp.o.d -o CMakeFiles/vgio.dir/src/stream.cpp.o -c /<>/deps/libvgio/src/stream.cpp [ 44%] Building CXX object CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o -MF CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o.d -o CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o -c /<>/deps/libvgio/src/stream_multiplexer.cpp [ 47%] Building CXX object CMakeFiles/vgio.dir/src/vpkg.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/vpkg.cpp.o -MF CMakeFiles/vgio.dir/src/vpkg.cpp.o.d -o CMakeFiles/vgio.dir/src/vpkg.cpp.o -c /<>/deps/libvgio/src/vpkg.cpp [ 50%] Linking CXX shared library libvgio.so /usr/bin/cmake -E cmake_link_script CMakeFiles/vgio.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -Wl,--dependency-file=CMakeFiles/vgio.dir/link.d -Wl,-z,relro -Wl,-z,now -L/<>/lib -shared -Wl,-soname,libvgio.so -o libvgio.so CMakeFiles/vgio.dir/vg.pb.cc.o CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o CMakeFiles/vgio.dir/src/alignment_io.cpp.o CMakeFiles/vgio.dir/src/basic_stream.cpp.o CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o CMakeFiles/vgio.dir/src/edit.cpp.o CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o CMakeFiles/vgio.dir/src/json2pb.cpp.o CMakeFiles/vgio.dir/src/message_emitter.cpp.o CMakeFiles/vgio.dir/src/message_iterator.cpp.o CMakeFiles/vgio.dir/src/registry.cpp.o CMakeFiles/vgio.dir/src/stream.cpp.o CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o CMakeFiles/vgio.dir/src/vpkg.cpp.o /usr/lib/x86_64-linux-gnu/libprotobuf.so -lhts -ljansson /<>/lib/libhandlegraph.so make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 50%] Built target vgio make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 52%] Building CXX object CMakeFiles/vgio_static.dir/vg.pb.cc.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/vg.pb.cc.o -MF CMakeFiles/vgio_static.dir/vg.pb.cc.o.d -o CMakeFiles/vgio_static.dir/vg.pb.cc.o -c /<>/deps/libvgio/build-vg/vg.pb.cc [ 55%] Building CXX object CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o -MF CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o.d -o CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o -c /<>/deps/libvgio/src/alignment_emitter.cpp [ 58%] Building CXX object CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o -MF CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o.d -o CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o -c /<>/deps/libvgio/src/alignment_io.cpp [ 61%] Building CXX object CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o -c /<>/deps/libvgio/src/basic_stream.cpp [ 64%] Building CXX object CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_input_stream.cpp [ 67%] Building CXX object CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_output_stream.cpp [ 70%] Building CXX object CMakeFiles/vgio_static.dir/src/edit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/edit.cpp.o -MF CMakeFiles/vgio_static.dir/src/edit.cpp.o.d -o CMakeFiles/vgio_static.dir/src/edit.cpp.o -c /<>/deps/libvgio/src/edit.cpp [ 73%] Building CXX object CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o -MF CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o -c /<>/deps/libvgio/src/hfile_cppstream.cpp [ 76%] Building CXX object CMakeFiles/vgio_static.dir/src/json2pb.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/json2pb.cpp.o -MF CMakeFiles/vgio_static.dir/src/json2pb.cpp.o.d -o CMakeFiles/vgio_static.dir/src/json2pb.cpp.o -c /<>/deps/libvgio/src/json2pb.cpp [ 79%] Building CXX object CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o -MF CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o.d -o CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o -c /<>/deps/libvgio/src/message_emitter.cpp [ 82%] Building CXX object CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o -MF CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o.d -o CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o -c /<>/deps/libvgio/src/message_iterator.cpp [ 85%] Building CXX object CMakeFiles/vgio_static.dir/src/registry.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/registry.cpp.o -MF CMakeFiles/vgio_static.dir/src/registry.cpp.o.d -o CMakeFiles/vgio_static.dir/src/registry.cpp.o -c /<>/deps/libvgio/src/registry.cpp [ 88%] Building CXX object CMakeFiles/vgio_static.dir/src/stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/stream.cpp.o -c /<>/deps/libvgio/src/stream.cpp [ 91%] Building CXX object CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o -MF CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o.d -o CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o -c /<>/deps/libvgio/src/stream_multiplexer.cpp [ 94%] Building CXX object CMakeFiles/vgio_static.dir/src/vpkg.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/vpkg.cpp.o -MF CMakeFiles/vgio_static.dir/src/vpkg.cpp.o.d -o CMakeFiles/vgio_static.dir/src/vpkg.cpp.o -c /<>/deps/libvgio/src/vpkg.cpp [ 97%] Linking CXX static library libvgio.a /usr/bin/cmake -P CMakeFiles/vgio_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/vgio_static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libvgio.a CMakeFiles/vgio_static.dir/vg.pb.cc.o CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o CMakeFiles/vgio_static.dir/src/edit.cpp.o CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o CMakeFiles/vgio_static.dir/src/json2pb.cpp.o CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o CMakeFiles/vgio_static.dir/src/registry.cpp.o CMakeFiles/vgio_static.dir/src/stream.cpp.o CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o CMakeFiles/vgio_static.dir/src/vpkg.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libvgio.a make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [100%] Built target vgio_static make[4]: Leaving directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles 0 make[3]: Leaving directory '/<>/deps/libvgio/build-vg' make[3]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -S/<>/deps/libvgio -B/<>/deps/libvgio/build-vg --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles /<>/deps/libvgio/build-vg//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/link_target.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E create_symlink . vg make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 0%] Built target link_target make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' make[5]: Nothing to be done for 'CMakeFiles/vgio.dir/build'. make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 50%] Built target vgio make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' make[5]: Nothing to be done for 'CMakeFiles/vgio_static.dir/build'. make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [100%] Built target vgio_static make[4]: Leaving directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/libvgio/build-vg' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/libvgio/build-vg' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /<>/lib/libvgio.so -- Installing: /<>/lib/libvgio.a -- Up-to-date: /<>/include -- Installing: /<>/include/vg -- Installing: /<>/include/vg/io -- Installing: /<>/include/vg/io/vpkg.hpp -- Installing: /<>/include/vg/io/stream_multiplexer.hpp -- Installing: /<>/include/vg/io/stream.hpp -- Installing: /<>/include/vg/io/registry.hpp -- Installing: /<>/include/vg/io/protobuf_iterator.hpp -- Installing: /<>/include/vg/io/protobuf_emitter.hpp -- Installing: /<>/include/vg/io/message_iterator.hpp -- Installing: /<>/include/vg/io/message_emitter.hpp -- Installing: /<>/include/vg/io/loader.hpp -- Installing: /<>/include/vg/io/json2pb.h -- Installing: /<>/include/vg/io/hfile_internal.hpp -- Installing: /<>/include/vg/io/hfile_cppstream.hpp -- Installing: /<>/include/vg/io/gafkluge.hpp -- Installing: /<>/include/vg/io/fdstream.hpp -- Installing: /<>/include/vg/io/edit.hpp -- Installing: /<>/include/vg/io/blocked_gzip_output_stream.hpp -- Installing: /<>/include/vg/io/blocked_gzip_input_stream.hpp -- Installing: /<>/include/vg/io/basic_stream.hpp -- Installing: /<>/include/vg/io/alignment_io.hpp -- Installing: /<>/include/vg/io/alignment_emitter.hpp -- Installing: /<>/include/vg/vg.pb.h -- Installing: /<>/lib/cmake/VGio/VGioTargets.cmake -- Installing: /<>/lib/cmake/VGio/VGioTargets-noconfig.cmake -- Installing: /<>/lib/cmake/VGio/VGioConfig.cmake -- Installing: /<>/lib/cmake/VGio/VGioConfigVersion.cmake make[3]: Leaving directory '/<>/deps/libvgio/build-vg' cp deps/BBHash/BooPHF.h /<>/include cp -r deps/sparsepp/sparsepp include/ rm -Rf include/dynamic.hpp include/dynamic # annoyingly doesn't have an install option on the cmake, so we manually move their external dependency headers cd /<>/deps/DYNAMIC && rm -Rf build && mkdir -p build && cd build && export CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp" && cmake -DCMAKE_VERBOSE_MAKEFILE=ON .. && make CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Setting build type to 'Release' as none was specified. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Building in Release mode -- Configuring done (1.6s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/DYNAMIC/build make[3]: Entering directory '/<>/deps/DYNAMIC/build' /usr/bin/cmake -S/<>/deps/DYNAMIC -B/<>/deps/DYNAMIC/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/DYNAMIC/build/CMakeFiles /<>/deps/DYNAMIC/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/DYNAMIC/build' make -f CMakeFiles/debug.dir/build.make CMakeFiles/debug.dir/depend make[5]: Entering directory '/<>/deps/DYNAMIC/build' cd /<>/deps/DYNAMIC/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/DYNAMIC /<>/deps/DYNAMIC /<>/deps/DYNAMIC/build /<>/deps/DYNAMIC/build /<>/deps/DYNAMIC/build/CMakeFiles/debug.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/DYNAMIC/build' make -f CMakeFiles/debug.dir/build.make CMakeFiles/debug.dir/build make[5]: Entering directory '/<>/deps/DYNAMIC/build' [ 6%] Building CXX object CMakeFiles/debug.dir/debug.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/DYNAMIC/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx2 -fopenmp --std=c++11 -O3 -DNDEBUG -ggdb -Ofast -fstrict-aliasing -DNDEBUG -march=native -MD -MT CMakeFiles/debug.dir/debug.cpp.o -MF CMakeFiles/debug.dir/debug.cpp.o.d -o CMakeFiles/debug.dir/debug.cpp.o -c /<>/deps/DYNAMIC/debug.cpp cc1plus: error: bad value ‘native’ for ‘-march=’ switch cc1plus: note: valid arguments to ‘-march=’ switch are: nocona core2 nehalem corei7 westmere sandybridge corei7-avx ivybridge core-avx-i haswell core-avx2 broadwell skylake skylake-avx512 cannonlake icelake-client rocketlake icelake-server cascadelake tigerlake cooperlake sapphirerapids emeraldrapids alderlake raptorlake meteorlake graniterapids graniterapids-d arrowlake arrowlake-s lunarlake pantherlake bonnell atom silvermont slm goldmont goldmont-plus tremont gracemont sierraforest grandridge clearwaterforest knl knm x86-64 x86-64-v2 x86-64-v3 x86-64-v4 eden-x2 nano nano-1000 nano-2000 nano-3000 nano-x2 eden-x4 nano-x4 lujiazui yongfeng k8 k8-sse3 opteron opteron-sse3 athlon64 athlon64-sse3 athlon-fx amdfam10 barcelona bdver1 bdver2 bdver3 bdver4 znver1 znver2 znver3 znver4 znver5 btver1 btver2 make[5]: *** [CMakeFiles/debug.dir/build.make:82: CMakeFiles/debug.dir/debug.cpp.o] Error 1 make[5]: Leaving directory '/<>/deps/DYNAMIC/build' make[4]: *** [CMakeFiles/Makefile2:111: CMakeFiles/debug.dir/all] Error 2 make[4]: Leaving directory '/<>/deps/DYNAMIC/build' make[3]: *** [Makefile:94: all] Error 2 make[3]: Leaving directory '/<>/deps/DYNAMIC/build' make[2]: *** [Makefile:607: include/dynamic/dynamic.hpp] Error 2 make[2]: Leaving directory '/<>' dh_auto_build: error: make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc SFX=-avx2 all test/build_graph bin/shuf returned exit code 2 make[2]: Entering directory '/<>' Package libfastahack was not found in the pkg-config search path. Perhaps you should add the directory containing `libfastahack.pc' to the PKG_CONFIG_PATH environment variable Package 'libfastahack', required by 'virtual:world', not found Package cairo was not found in the pkg-config search path. Perhaps you should add the directory containing `cairo.pc' to the PKG_CONFIG_PATH environment variable Package 'cairo', required by 'virtual:world', not found Package 'libzstd', required by 'virtual:world', not found Package 'protobuf', required by 'virtual:world', not found Package 'jansson', required by 'virtual:world', not found Package libfastahack was not found in the pkg-config search path. Perhaps you should add the directory containing `libfastahack.pc' to the PKG_CONFIG_PATH environment variable Package 'libfastahack', required by 'virtual:world', not found Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable Package 'htslib', required by 'virtual:world', not found Package cairo was not found in the pkg-config search path. Perhaps you should add the directory containing `cairo.pc' to the PKG_CONFIG_PATH environment variable Package 'cairo', required by 'virtual:world', not found Package 'libzstd', required by 'virtual:world', not found Package protobuf was not found in the pkg-config search path. Perhaps you should add the directory containing `protobuf.pc' to the PKG_CONFIG_PATH environment variable Package 'protobuf', required by 'virtual:world', not found Package 'jansson', required by 'virtual:world', not found OS is Linux Compiler g++ is assumed to be GCC CXXFLAGS are -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp LDFLAGS are -Wl,-z,relro -Wl,-z,now Makefile:266: OpenMP header omp.h is not available! vg will not be able to build! rm -f -r bin/unittest rm -f -r lib rm -f -r obj/unittest/support rm -f -r obj/unittest rm -f -r obj/subcommand rm -f -r obj/pic/io rm -f -r obj/io rm -f -r obj/pic/algorithms rm -f -r obj/algorithms rm -f -r obj/config rm -f -r obj/pic rm -f -r obj rm -f -r share/ cd ./deps && cd sonLib && make clean make[3]: Entering directory '/<>/deps/sonLib' cd C && make clean make[4]: Entering directory '/<>/deps/sonLib/C' rm -rf ../bin ../lib make[4]: Leaving directory '/<>/deps/sonLib/C' cd externalTools && make clean make[4]: Entering directory '/<>/deps/sonLib/externalTools' cd cutest && make clean make[5]: Entering directory '/<>/deps/sonLib/externalTools/cutest' rm -f ../../lib/cuTest.a ../../lib/CuTest.h make[5]: Leaving directory '/<>/deps/sonLib/externalTools/cutest' cd quicktree_1.1 && make clean make[5]: Entering directory '/<>/deps/sonLib/externalTools/quicktree_1.1' rm -rf ./obj/*.o make[5]: Leaving directory '/<>/deps/sonLib/externalTools/quicktree_1.1' make[4]: Leaving directory '/<>/deps/sonLib/externalTools' rm -f ./bin/sonLib_daemonize.py make[3]: Leaving directory '/<>/deps/sonLib' cd ./deps && cd gcsa2 && make clean make[3]: Entering directory '/<>/deps/gcsa2' rm -rf bin lib obj rm -f *.o *.a build_gcsa convert_graph gcsa_format try_extend cd benchmark && make clean make[4]: Entering directory '/<>/deps/gcsa2/benchmark' rm -f count_kmers query_gcsa csa_builder csa_query *.o make[4]: Leaving directory '/<>/deps/gcsa2/benchmark' make[3]: Leaving directory '/<>/deps/gcsa2' cd ./deps && cd gbwt && make clean make[3]: Entering directory '/<>/deps/gbwt' rm -rf bin lib obj rm -f *.o *.a build_gbwt build_ri merge_gbwt benchmark metadata_tool remove_seq cd tests && make clean make[4]: Entering directory '/<>/deps/gbwt/tests' rm -f test_bwtmerge test_metadata test_queries test_support test_variants *.o make[4]: Leaving directory '/<>/deps/gbwt/tests' make[3]: Leaving directory '/<>/deps/gbwt' cd ./deps && cd gbwtgraph && make clean make[3]: Entering directory '/<>/deps/gbwtgraph' rm -rf bin lib obj rm -f *.o *.a gfa2gbwt cd tests && make clean make[4]: Entering directory '/<>/deps/gbwtgraph/tests' rm -f test_utils test_gbwtgraph test_cached_gbwtgraph test_gfa test_gbz test_minimizer test_index test_algorithms test_path_cover *.o make[4]: Leaving directory '/<>/deps/gbwtgraph/tests' make[3]: Leaving directory '/<>/deps/gbwtgraph' cd ./deps && cd kff-cpp-api && rm -Rf build cd ./deps && cd gssw && make clean make[3]: Entering directory '/<>/deps/gssw' rm -f -r lib/ rm -f -r bin/ rm -f -r obj/ make[3]: Leaving directory '/<>/deps/gssw' cd ./deps && cd ssw && cd src && make clean make[3]: Entering directory '/<>/deps/ssw/src' rm -f ssw.o ssw_cpp.o ssw_test libssw.so example_c example_cpp libsswjni.so ssw.jar ssw/Aligner.class ssw/Alignment.class ssw/Example.class *~ make[3]: Leaving directory '/<>/deps/ssw/src' cd ./deps && cd progress_bar && make clean make[3]: Entering directory '/<>/deps/progress_bar' make[3]: Leaving directory '/<>/deps/progress_bar' cd ./deps && cd sdsl-lite && ./uninstall.sh || true Library files will be removed from '/var/lib/sbuild/lib' and '/var/lib/sbuild/include' make[3]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 uninstall-sdsl make[4]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 CMakeFiles/uninstall-sdsl.dir/all make[5]: Entering directory '/<>/deps/sdsl-lite/build' make -f CMakeFiles/uninstall-sdsl.dir/build.make CMakeFiles/uninstall-sdsl.dir/depend make[6]: Entering directory '/<>/deps/sdsl-lite/build' cd /<>/deps/sdsl-lite/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/sdsl-lite /<>/deps/sdsl-lite /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build/CMakeFiles/uninstall-sdsl.dir/DependInfo.cmake "--color=" make[6]: Leaving directory '/<>/deps/sdsl-lite/build' make -f CMakeFiles/uninstall-sdsl.dir/build.make CMakeFiles/uninstall-sdsl.dir/build make[6]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -P /<>/deps/sdsl-lite/build/CMakeModules/cmake_uninstall.cmake -- Looking for "/<>/lib/pkgconfig/sdsl-lite.pc" - not found -- Looking for "/<>/include/sdsl/bit_vector_il.hpp" - found -- Looking for "/<>/include/sdsl/bit_vectors.hpp" - found -- Looking for "/<>/include/sdsl/bits.hpp" - found -- Looking for "/<>/include/sdsl/bp_support.hpp" - found -- Looking for "/<>/include/sdsl/bp_support_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/bp_support_g.hpp" - found -- Looking for "/<>/include/sdsl/bp_support_gg.hpp" - found -- Looking for "/<>/include/sdsl/bp_support_sada.hpp" - found -- Looking for "/<>/include/sdsl/coder.hpp" - found -- Looking for "/<>/include/sdsl/coder_comma.hpp" - found -- Looking for "/<>/include/sdsl/coder_elias_delta.hpp" - found -- Looking for "/<>/include/sdsl/coder_elias_gamma.hpp" - found -- Looking for "/<>/include/sdsl/coder_fibonacci.hpp" - found -- Looking for "/<>/include/sdsl/config.hpp" - found -- Looking for "/<>/include/sdsl/construct.hpp" - found -- Looking for "/<>/include/sdsl/construct_bwt.hpp" - found -- Looking for "/<>/include/sdsl/construct_config.hpp" - found -- Looking for "/<>/include/sdsl/construct_isa.hpp" - found -- Looking for "/<>/include/sdsl/construct_lcp.hpp" - found -- Looking for "/<>/include/sdsl/construct_lcp_helper.hpp" - found -- Looking for "/<>/include/sdsl/construct_sa.hpp" - found -- Looking for "/<>/include/sdsl/construct_sa_se.hpp" - found -- Looking for "/<>/include/sdsl/csa_alphabet_strategy.hpp" - found -- Looking for "/<>/include/sdsl/csa_bitcompressed.hpp" - found -- Looking for "/<>/include/sdsl/csa_sada.hpp" - found -- Looking for "/<>/include/sdsl/csa_sampling_strategy.hpp" - found -- Looking for "/<>/include/sdsl/csa_wt.hpp" - found -- Looking for "/<>/include/sdsl/cst_fully.hpp" - found -- Looking for "/<>/include/sdsl/cst_iterators.hpp" - found -- Looking for "/<>/include/sdsl/cst_sada.hpp" - found -- Looking for "/<>/include/sdsl/cst_sct3.hpp" - found -- Looking for "/<>/include/sdsl/dac_vector.hpp" - found -- Looking for "/<>/include/sdsl/enc_vector.hpp" - found -- Looking for "/<>/include/sdsl/fast_cache.hpp" - found -- Looking for "/<>/include/sdsl/hyb_vector.hpp" - found -- Looking for "/<>/include/sdsl/int_vector.hpp" - found -- Looking for "/<>/include/sdsl/int_vector_buffer.hpp" - found -- Looking for "/<>/include/sdsl/int_vector_io_wrappers.hpp" - found -- Looking for "/<>/include/sdsl/int_vector_mapper.hpp" - found -- Looking for "/<>/include/sdsl/inv_perm_support.hpp" - found -- Looking for "/<>/include/sdsl/io.hpp" - found -- Looking for "/<>/include/sdsl/iterators.hpp" - found -- Looking for "/<>/include/sdsl/k2_treap.hpp" - found -- Looking for "/<>/include/sdsl/k2_treap_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/k2_treap_helper.hpp" - found -- Looking for "/<>/include/sdsl/k2_tree.hpp" - found -- Looking for "/<>/include/sdsl/k2_tree_helper.hpp" - found -- Looking for "/<>/include/sdsl/lcp.hpp" - found -- Looking for "/<>/include/sdsl/lcp_bitcompressed.hpp" - found -- Looking for "/<>/include/sdsl/lcp_byte.hpp" - found -- Looking for "/<>/include/sdsl/lcp_dac.hpp" - found -- Looking for "/<>/include/sdsl/lcp_support_sada.hpp" - found -- Looking for "/<>/include/sdsl/lcp_support_tree.hpp" - found -- Looking for "/<>/include/sdsl/lcp_support_tree2.hpp" - found -- Looking for "/<>/include/sdsl/lcp_vlc.hpp" - found -- Looking for "/<>/include/sdsl/lcp_wt.hpp" - found -- Looking for "/<>/include/sdsl/louds_tree.hpp" - found -- Looking for "/<>/include/sdsl/memory_management.hpp" - found -- Looking for "/<>/include/sdsl/nearest_neighbour_dictionary.hpp" - found -- Looking for "/<>/include/sdsl/nn_dict_dynamic.hpp" - found -- Looking for "/<>/include/sdsl/qsufsort.hpp" - found -- Looking for "/<>/include/sdsl/ram_filebuf.hpp" - found -- Looking for "/<>/include/sdsl/ram_fs.hpp" - found -- Looking for "/<>/include/sdsl/rank_support.hpp" - found -- Looking for "/<>/include/sdsl/rank_support_scan.hpp" - found -- Looking for "/<>/include/sdsl/rank_support_v.hpp" - found -- Looking for "/<>/include/sdsl/rank_support_v5.hpp" - found -- Looking for "/<>/include/sdsl/raster_img.hpp" - found -- Looking for "/<>/include/sdsl/rle_vector.hpp" - found -- Looking for "/<>/include/sdsl/rmq_succinct_sada.hpp" - found -- Looking for "/<>/include/sdsl/rmq_succinct_sct.hpp" - found -- Looking for "/<>/include/sdsl/rmq_support.hpp" - found -- Looking for "/<>/include/sdsl/rmq_support_sparse_table.hpp" - found -- Looking for "/<>/include/sdsl/rrr_helper.hpp" - found -- Looking for "/<>/include/sdsl/rrr_vector.hpp" - found -- Looking for "/<>/include/sdsl/rrr_vector_15.hpp" - found -- Looking for "/<>/include/sdsl/sd_vector.hpp" - found -- Looking for "/<>/include/sdsl/sdsl_concepts.hpp" - found -- Looking for "/<>/include/sdsl/select_support.hpp" - found -- Looking for "/<>/include/sdsl/select_support_mcl.hpp" - found -- Looking for "/<>/include/sdsl/select_support_scan.hpp" - found -- Looking for "/<>/include/sdsl/sfstream.hpp" - found -- Looking for "/<>/include/sdsl/simple_sds.hpp" - found -- Looking for "/<>/include/sdsl/sorted_int_stack.hpp" - found -- Looking for "/<>/include/sdsl/sorted_multi_stack_support.hpp" - found -- Looking for "/<>/include/sdsl/sorted_stack_support.hpp" - found -- Looking for "/<>/include/sdsl/structure_tree.hpp" - found -- Looking for "/<>/include/sdsl/suffix_array_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/suffix_array_helper.hpp" - found -- Looking for "/<>/include/sdsl/suffix_arrays.hpp" - found -- Looking for "/<>/include/sdsl/suffix_tree_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/suffix_tree_helper.hpp" - found -- Looking for "/<>/include/sdsl/suffix_trees.hpp" - found -- Looking for "/<>/include/sdsl/uint128_t.hpp" - found -- Looking for "/<>/include/sdsl/uint256_t.hpp" - found -- Looking for "/<>/include/sdsl/uintx_t.hpp" - found -- Looking for "/<>/include/sdsl/util.hpp" - found -- Looking for "/<>/include/sdsl/vectors.hpp" - found -- Looking for "/<>/include/sdsl/vlc_vector.hpp" - found -- Looking for "/<>/include/sdsl/wavelet_trees.hpp" - found -- Looking for "/<>/include/sdsl/wm_int.hpp" - found -- Looking for "/<>/include/sdsl/wt_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/wt_ap.hpp" - found -- Looking for "/<>/include/sdsl/wt_blcd.hpp" - found -- Looking for "/<>/include/sdsl/wt_gmr.hpp" - found -- Looking for "/<>/include/sdsl/wt_helper.hpp" - found -- Looking for "/<>/include/sdsl/wt_huff.hpp" - found -- Looking for "/<>/include/sdsl/wt_hutu.hpp" - found -- Looking for "/<>/include/sdsl/wt_int.hpp" - found -- Looking for "/<>/include/sdsl/wt_pc.hpp" - found -- Looking for "/<>/include/sdsl/wt_rlmn.hpp" - found -- Looking for "/<>/lib/libsdsl.a" - not found -- Uninstalling "/<>/include/sdsl/bit_vector_il.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bit_vectors.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bits.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support_g.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support_gg.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder_comma.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder_elias_delta.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder_elias_gamma.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder_fibonacci.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/config.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_bwt.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_config.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_isa.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_lcp.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_lcp_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_sa.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_sa_se.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_alphabet_strategy.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_bitcompressed.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_sampling_strategy.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_wt.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/cst_fully.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/cst_iterators.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/cst_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/cst_sct3.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/dac_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/enc_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/fast_cache.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/hyb_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/int_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/int_vector_buffer.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/int_vector_io_wrappers.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/int_vector_mapper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/inv_perm_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/io.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/iterators.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_treap.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_treap_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_treap_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_tree.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_tree_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_bitcompressed.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_byte.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_dac.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_support_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_support_tree.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_support_tree2.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_vlc.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_wt.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/louds_tree.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/memory_management.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/nearest_neighbour_dictionary.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/nn_dict_dynamic.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/qsufsort.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/ram_filebuf.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/ram_fs.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rank_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rank_support_scan.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rank_support_v.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rank_support_v5.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/raster_img.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rle_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rmq_succinct_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rmq_succinct_sct.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rmq_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rmq_support_sparse_table.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rrr_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rrr_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rrr_vector_15.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sd_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sdsl_concepts.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/select_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/select_support_mcl.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/select_support_scan.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sfstream.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/simple_sds.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sorted_int_stack.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sorted_multi_stack_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sorted_stack_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/structure_tree.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_array_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_array_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_arrays.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_tree_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_tree_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_trees.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/uint128_t.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/uint256_t.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/uintx_t.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/util.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/vectors.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/vlc_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wavelet_trees.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wm_int.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_ap.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_blcd.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_gmr.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_huff.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_hutu.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_int.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_pc.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_rlmn.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. make[6]: Leaving directory '/<>/deps/sdsl-lite/build' Built target uninstall-sdsl make[5]: Leaving directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make[4]: Leaving directory '/<>/deps/sdsl-lite/build' make[3]: Leaving directory '/<>/deps/sdsl-lite/build' Installed sdsl files were removed. cd ./deps && cd sha1 && make clean make[3]: Entering directory '/<>/deps/sha1' rm -f demo_sha1 test_sha1 make[3]: Leaving directory '/<>/deps/sha1' cd ./deps && cd structures && make clean make[3]: Entering directory '/<>/deps/structures' if [ ! -d bin ]; then mkdir -p bin; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -d lib ]; then mkdir -p lib; fi find bin obj lib -type f -delete make[3]: Leaving directory '/<>/deps/structures' cd ./deps && cd sublinear-Li-Stephens && make clean make[3]: Entering directory '/<>/deps/sublinear-Li-Stephens' rm -f /<>/deps/sublinear-Li-Stephens/bin/* /<>/deps/sublinear-Li-Stephens/obj/*.o /<>/deps/sublinear-Li-Stephens/obj/test/*.o /<>/deps/sublinear-Li-Stephens/lib/* make[3]: Leaving directory '/<>/deps/sublinear-Li-Stephens' cd ./deps && cd libhandlegraph && rm -Rf build CMakeCache.txt CMakeFiles cd ./deps && cd libvgio && rm -Rf build CMakeCache.txt CMakeFiles # lru_cache is never built because it is header-only # bash-tap is never built either make[2]: Leaving directory '/<>' make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc SFX=-avx all test/build_graph bin/shuf make[2]: Entering directory '/<>' OS is Linux Compiler x86_64-linux-gnu-g++ is assumed to be GCC CXXFLAGS are -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp LDFLAGS are -Wl,-z,relro -Wl,-z,now . ./source_me.sh && cd deps/sdsl-lite && BUILD_PORTABLE=1 CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp" ./install.sh /<> Library will be installed in '/<>' WARNING: .git/hooks directory does not exists. The pre-commit hook is not installed. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Compiler is recent enough to support C++14. -- Performing Test HAVE_GCC_STD=C__14__WALL__WEXTRA__DNDEBUG -- Performing Test HAVE_GCC_STD=C__14__WALL__WEXTRA__DNDEBUG - Success -- Performing Test HAVE_GCC_O3__FFAST_MATH__FUNROLL_LOOPS -- Performing Test HAVE_GCC_O3__FFAST_MATH__FUNROLL_LOOPS - Success -- Performing Test HAVE_CXA_DEMANGLE -- Performing Test HAVE_CXA_DEMANGLE - Success -- Compiler supports DEMANGLE. -- Performing Test HAVE_GCC_DHAVE_CXA_DEMANGLE -- Performing Test HAVE_GCC_DHAVE_CXA_DEMANGLE - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) CMake Warning at CMakeLists.txt:102 (message): git not found. Cloning of submodules will not work. -- Looking for C++ include cstdio -- Looking for C++ include cstdio - found -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (4.5s) -- Generating done (0.6s) -- Build files have been written to: /<>/deps/sdsl-lite/build make[3]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 sdsl make[4]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 8 make -f CMakeFiles/Makefile2 lib/CMakeFiles/sdsl.dir/all make[5]: Entering directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/depend make[6]: Entering directory '/<>/deps/sdsl-lite/build' cd /<>/deps/sdsl-lite/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/sdsl-lite /<>/deps/sdsl-lite/lib /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build/lib /<>/deps/sdsl-lite/build/lib/CMakeFiles/sdsl.dir/DependInfo.cmake "--color=" make[6]: Leaving directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/build make[6]: Entering directory '/<>/deps/sdsl-lite/build' [ 0%] Building CXX object lib/CMakeFiles/sdsl.dir/bits.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/bits.cpp.o -MF CMakeFiles/sdsl.dir/bits.cpp.o.d -o CMakeFiles/sdsl.dir/bits.cpp.o -c /<>/deps/sdsl-lite/lib/bits.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o -MF CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o.d -o CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o -c /<>/deps/sdsl-lite/lib/bp_support_algorithm.cpp In file included from /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:24, from /<>/deps/sdsl-lite/build/lib/../include/sdsl/bp_support_algorithm.hpp:24, from /<>/deps/sdsl-lite/lib/bp_support_algorithm.cpp:1: In static member function ‘static void sdsl::bits::write_int(uint64_t*, uint64_t, uint8_t, uint8_t)’, inlined from ‘static void sdsl::memory_manager::resize(t_vec&, typename t_vec::size_type) [with t_vec = sdsl::int_vector<0>]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/memory_management.hpp:364:36, inlined from ‘void sdsl::int_vector< >::bit_resize(size_type) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:1358:27, inlined from ‘void sdsl::int_vector< >::resize(size_type) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:380:23, inlined from ‘sdsl::int_vector< >::int_vector(size_type, value_type, uint8_t) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:1285:11, inlined from ‘sdsl::excess::impl::impl()’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/bp_support_algorithm.hpp:114:46: /<>/deps/sdsl-lite/build/lib/../include/sdsl/bits.hpp:448:9: warning: ‘*temp’ may be used uninitialized [-Wmaybe-uninitialized] 448 | *word &= | ^~~~~ [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o -MF CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o.d -o CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o -c /<>/deps/sdsl-lite/lib/coder_elias_delta.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o -MF CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o.d -o CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o -c /<>/deps/sdsl-lite/lib/coder_elias_gamma.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o -MF CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o.d -o CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o -c /<>/deps/sdsl-lite/lib/coder_fibonacci.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/config.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/config.cpp.o -MF CMakeFiles/sdsl.dir/config.cpp.o.d -o CMakeFiles/sdsl.dir/config.cpp.o -c /<>/deps/sdsl-lite/lib/config.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_config.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_config.cpp.o -MF CMakeFiles/sdsl.dir/construct_config.cpp.o.d -o CMakeFiles/sdsl.dir/construct_config.cpp.o -c /<>/deps/sdsl-lite/lib/construct_config.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o -MF CMakeFiles/sdsl.dir/construct_isa.cpp.o.d -o CMakeFiles/sdsl.dir/construct_isa.cpp.o -c /<>/deps/sdsl-lite/lib/construct_isa.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o -MF CMakeFiles/sdsl.dir/construct_lcp.cpp.o.d -o CMakeFiles/sdsl.dir/construct_lcp.cpp.o -c /<>/deps/sdsl-lite/lib/construct_lcp.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o -MF CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o.d -o CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o -c /<>/deps/sdsl-lite/lib/construct_lcp_helper.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o -MF CMakeFiles/sdsl.dir/construct_sa.cpp.o.d -o CMakeFiles/sdsl.dir/construct_sa.cpp.o -c /<>/deps/sdsl-lite/lib/construct_sa.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o -MF CMakeFiles/sdsl.dir/construct_sa_se.cpp.o.d -o CMakeFiles/sdsl.dir/construct_sa_se.cpp.o -c /<>/deps/sdsl-lite/lib/construct_sa_se.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o -MF CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o.d -o CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o -c /<>/deps/sdsl-lite/lib/csa_alphabet_strategy.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/io.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/io.cpp.o -MF CMakeFiles/sdsl.dir/io.cpp.o.d -o CMakeFiles/sdsl.dir/io.cpp.o -c /<>/deps/sdsl-lite/lib/io.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o -MF CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o.d -o CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o -c /<>/deps/sdsl-lite/lib/lcp_support_tree.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o -MF CMakeFiles/sdsl.dir/louds_tree.cpp.o.d -o CMakeFiles/sdsl.dir/louds_tree.cpp.o -c /<>/deps/sdsl-lite/lib/louds_tree.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/memory_management.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/memory_management.cpp.o -MF CMakeFiles/sdsl.dir/memory_management.cpp.o.d -o CMakeFiles/sdsl.dir/memory_management.cpp.o -c /<>/deps/sdsl-lite/lib/memory_management.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o -MF CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o.d -o CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o -c /<>/deps/sdsl-lite/lib/nn_dict_dynamic.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_filebuf.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/ram_filebuf.cpp.o -MF CMakeFiles/sdsl.dir/ram_filebuf.cpp.o.d -o CMakeFiles/sdsl.dir/ram_filebuf.cpp.o -c /<>/deps/sdsl-lite/lib/ram_filebuf.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_fs.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/ram_fs.cpp.o -MF CMakeFiles/sdsl.dir/ram_fs.cpp.o.d -o CMakeFiles/sdsl.dir/ram_fs.cpp.o -c /<>/deps/sdsl-lite/lib/ram_fs.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o -MF CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o.d -o CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o -c /<>/deps/sdsl-lite/lib/rrr_vector_15.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/sd_vector.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/sd_vector.cpp.o -MF CMakeFiles/sdsl.dir/sd_vector.cpp.o.d -o CMakeFiles/sdsl.dir/sd_vector.cpp.o -c /<>/deps/sdsl-lite/lib/sd_vector.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/sfstream.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/sfstream.cpp.o -MF CMakeFiles/sdsl.dir/sfstream.cpp.o.d -o CMakeFiles/sdsl.dir/sfstream.cpp.o -c /<>/deps/sdsl-lite/lib/sfstream.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/simple_sds.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/simple_sds.cpp.o -MF CMakeFiles/sdsl.dir/simple_sds.cpp.o.d -o CMakeFiles/sdsl.dir/simple_sds.cpp.o -c /<>/deps/sdsl-lite/lib/simple_sds.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/structure_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/structure_tree.cpp.o -MF CMakeFiles/sdsl.dir/structure_tree.cpp.o.d -o CMakeFiles/sdsl.dir/structure_tree.cpp.o -c /<>/deps/sdsl-lite/lib/structure_tree.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/uint128_t.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/uint128_t.cpp.o -MF CMakeFiles/sdsl.dir/uint128_t.cpp.o.d -o CMakeFiles/sdsl.dir/uint128_t.cpp.o -c /<>/deps/sdsl-lite/lib/uint128_t.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/uint256_t.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/uint256_t.cpp.o -MF CMakeFiles/sdsl.dir/uint256_t.cpp.o.d -o CMakeFiles/sdsl.dir/uint256_t.cpp.o -c /<>/deps/sdsl-lite/lib/uint256_t.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/util.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/util.cpp.o -MF CMakeFiles/sdsl.dir/util.cpp.o.d -o CMakeFiles/sdsl.dir/util.cpp.o -c /<>/deps/sdsl-lite/lib/util.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/wt_helper.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/wt_helper.cpp.o -MF CMakeFiles/sdsl.dir/wt_helper.cpp.o.d -o CMakeFiles/sdsl.dir/wt_helper.cpp.o -c /<>/deps/sdsl-lite/lib/wt_helper.cpp [100%] Linking CXX static library libsdsl.a cd /<>/deps/sdsl-lite/build/lib && /usr/bin/cmake -P CMakeFiles/sdsl.dir/cmake_clean_target.cmake cd /<>/deps/sdsl-lite/build/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/sdsl.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libsdsl.a CMakeFiles/sdsl.dir/bits.cpp.o CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o CMakeFiles/sdsl.dir/config.cpp.o CMakeFiles/sdsl.dir/construct_config.cpp.o CMakeFiles/sdsl.dir/construct_isa.cpp.o CMakeFiles/sdsl.dir/construct_lcp.cpp.o CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o CMakeFiles/sdsl.dir/construct_sa.cpp.o CMakeFiles/sdsl.dir/construct_sa_se.cpp.o CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o CMakeFiles/sdsl.dir/io.cpp.o CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o CMakeFiles/sdsl.dir/louds_tree.cpp.o CMakeFiles/sdsl.dir/memory_management.cpp.o CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o CMakeFiles/sdsl.dir/ram_filebuf.cpp.o CMakeFiles/sdsl.dir/ram_fs.cpp.o CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o CMakeFiles/sdsl.dir/sd_vector.cpp.o CMakeFiles/sdsl.dir/sfstream.cpp.o CMakeFiles/sdsl.dir/simple_sds.cpp.o CMakeFiles/sdsl.dir/structure_tree.cpp.o CMakeFiles/sdsl.dir/uint128_t.cpp.o CMakeFiles/sdsl.dir/uint256_t.cpp.o CMakeFiles/sdsl.dir/util.cpp.o CMakeFiles/sdsl.dir/wt_helper.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libsdsl.a make[6]: Leaving directory '/<>/deps/sdsl-lite/build' [100%] Built target sdsl make[5]: Leaving directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make[4]: Leaving directory '/<>/deps/sdsl-lite/build' make[3]: Leaving directory '/<>/deps/sdsl-lite/build' Removing old files rm -rf '/<>/include/sdsl/*' rm -f '/<>/lib/libsdsl*' make[3]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles /<>/deps/sdsl-lite/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/depend make[5]: Entering directory '/<>/deps/sdsl-lite/build' cd /<>/deps/sdsl-lite/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/sdsl-lite /<>/deps/sdsl-lite/lib /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build/lib /<>/deps/sdsl-lite/build/lib/CMakeFiles/sdsl.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/build make[5]: Entering directory '/<>/deps/sdsl-lite/build' make[5]: Nothing to be done for 'lib/CMakeFiles/sdsl.dir/build'. make[5]: Leaving directory '/<>/deps/sdsl-lite/build' [100%] Built target sdsl make[4]: Leaving directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/sdsl-lite/build' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/sdsl-lite/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<>/lib/pkgconfig/sdsl-lite.pc -- Installing: /<>/include/sdsl/bit_vector_il.hpp -- Installing: /<>/include/sdsl/bit_vectors.hpp -- Installing: /<>/include/sdsl/bits.hpp -- Installing: /<>/include/sdsl/bp_support.hpp -- Installing: /<>/include/sdsl/bp_support_algorithm.hpp -- Installing: /<>/include/sdsl/bp_support_g.hpp -- Installing: /<>/include/sdsl/bp_support_gg.hpp -- Installing: /<>/include/sdsl/bp_support_sada.hpp -- Installing: /<>/include/sdsl/coder.hpp -- Installing: /<>/include/sdsl/coder_comma.hpp -- Installing: /<>/include/sdsl/coder_elias_delta.hpp -- Installing: /<>/include/sdsl/coder_elias_gamma.hpp -- Installing: /<>/include/sdsl/coder_fibonacci.hpp -- Installing: /<>/include/sdsl/config.hpp -- Installing: /<>/include/sdsl/construct.hpp -- Installing: /<>/include/sdsl/construct_bwt.hpp -- Installing: /<>/include/sdsl/construct_config.hpp -- Installing: /<>/include/sdsl/construct_isa.hpp -- Installing: /<>/include/sdsl/construct_lcp.hpp -- Installing: /<>/include/sdsl/construct_lcp_helper.hpp -- Installing: /<>/include/sdsl/construct_sa.hpp -- Installing: /<>/include/sdsl/construct_sa_se.hpp -- Installing: /<>/include/sdsl/csa_alphabet_strategy.hpp -- Installing: /<>/include/sdsl/csa_bitcompressed.hpp -- Installing: /<>/include/sdsl/csa_sada.hpp -- Installing: /<>/include/sdsl/csa_sampling_strategy.hpp -- Installing: /<>/include/sdsl/csa_wt.hpp -- Installing: /<>/include/sdsl/cst_fully.hpp -- Installing: /<>/include/sdsl/cst_iterators.hpp -- Installing: /<>/include/sdsl/cst_sada.hpp -- Installing: /<>/include/sdsl/cst_sct3.hpp -- Installing: /<>/include/sdsl/dac_vector.hpp -- Installing: /<>/include/sdsl/enc_vector.hpp -- Installing: /<>/include/sdsl/fast_cache.hpp -- Installing: /<>/include/sdsl/hyb_vector.hpp -- Installing: /<>/include/sdsl/int_vector.hpp -- Installing: /<>/include/sdsl/int_vector_buffer.hpp -- Installing: /<>/include/sdsl/int_vector_io_wrappers.hpp -- Installing: /<>/include/sdsl/int_vector_mapper.hpp -- Installing: /<>/include/sdsl/inv_perm_support.hpp -- Installing: /<>/include/sdsl/io.hpp -- Installing: /<>/include/sdsl/iterators.hpp -- Installing: /<>/include/sdsl/k2_treap.hpp -- Installing: /<>/include/sdsl/k2_treap_algorithm.hpp -- Installing: /<>/include/sdsl/k2_treap_helper.hpp -- Installing: /<>/include/sdsl/k2_tree.hpp -- Installing: /<>/include/sdsl/k2_tree_helper.hpp -- Installing: /<>/include/sdsl/lcp.hpp -- Installing: /<>/include/sdsl/lcp_bitcompressed.hpp -- Installing: /<>/include/sdsl/lcp_byte.hpp -- Installing: /<>/include/sdsl/lcp_dac.hpp -- Installing: /<>/include/sdsl/lcp_support_sada.hpp -- Installing: /<>/include/sdsl/lcp_support_tree.hpp -- Installing: /<>/include/sdsl/lcp_support_tree2.hpp -- Installing: /<>/include/sdsl/lcp_vlc.hpp -- Installing: /<>/include/sdsl/lcp_wt.hpp -- Installing: /<>/include/sdsl/louds_tree.hpp -- Installing: /<>/include/sdsl/memory_management.hpp -- Installing: /<>/include/sdsl/nearest_neighbour_dictionary.hpp -- Installing: /<>/include/sdsl/nn_dict_dynamic.hpp -- Installing: /<>/include/sdsl/qsufsort.hpp -- Installing: /<>/include/sdsl/ram_filebuf.hpp -- Installing: /<>/include/sdsl/ram_fs.hpp -- Installing: /<>/include/sdsl/rank_support.hpp -- Installing: /<>/include/sdsl/rank_support_scan.hpp -- Installing: /<>/include/sdsl/rank_support_v.hpp -- Installing: /<>/include/sdsl/rank_support_v5.hpp -- Installing: /<>/include/sdsl/raster_img.hpp -- Installing: /<>/include/sdsl/rle_vector.hpp -- Installing: /<>/include/sdsl/rmq_succinct_sada.hpp -- Installing: /<>/include/sdsl/rmq_succinct_sct.hpp -- Installing: /<>/include/sdsl/rmq_support.hpp -- Installing: /<>/include/sdsl/rmq_support_sparse_table.hpp -- Installing: /<>/include/sdsl/rrr_helper.hpp -- Installing: /<>/include/sdsl/rrr_vector.hpp -- Installing: /<>/include/sdsl/rrr_vector_15.hpp -- Installing: /<>/include/sdsl/sd_vector.hpp -- Installing: /<>/include/sdsl/sdsl_concepts.hpp -- Installing: /<>/include/sdsl/select_support.hpp -- Installing: /<>/include/sdsl/select_support_mcl.hpp -- Installing: /<>/include/sdsl/select_support_scan.hpp -- Installing: /<>/include/sdsl/sfstream.hpp -- Installing: /<>/include/sdsl/simple_sds.hpp -- Installing: /<>/include/sdsl/sorted_int_stack.hpp -- Installing: /<>/include/sdsl/sorted_multi_stack_support.hpp -- Installing: /<>/include/sdsl/sorted_stack_support.hpp -- Installing: /<>/include/sdsl/structure_tree.hpp -- Installing: /<>/include/sdsl/suffix_array_algorithm.hpp -- Installing: /<>/include/sdsl/suffix_array_helper.hpp -- Installing: /<>/include/sdsl/suffix_arrays.hpp -- Installing: /<>/include/sdsl/suffix_tree_algorithm.hpp -- Installing: /<>/include/sdsl/suffix_tree_helper.hpp -- Installing: /<>/include/sdsl/suffix_trees.hpp -- Installing: /<>/include/sdsl/uint128_t.hpp -- Installing: /<>/include/sdsl/uint256_t.hpp -- Installing: /<>/include/sdsl/uintx_t.hpp -- Installing: /<>/include/sdsl/util.hpp -- Installing: /<>/include/sdsl/vectors.hpp -- Installing: /<>/include/sdsl/vlc_vector.hpp -- Installing: /<>/include/sdsl/wavelet_trees.hpp -- Installing: /<>/include/sdsl/wm_int.hpp -- Installing: /<>/include/sdsl/wt_algorithm.hpp -- Installing: /<>/include/sdsl/wt_ap.hpp -- Installing: /<>/include/sdsl/wt_blcd.hpp -- Installing: /<>/include/sdsl/wt_gmr.hpp -- Installing: /<>/include/sdsl/wt_helper.hpp -- Installing: /<>/include/sdsl/wt_huff.hpp -- Installing: /<>/include/sdsl/wt_hutu.hpp -- Installing: /<>/include/sdsl/wt_int.hpp -- Installing: /<>/include/sdsl/wt_pc.hpp -- Installing: /<>/include/sdsl/wt_rlmn.hpp -- Installing: /<>/lib/libsdsl.a make[3]: Leaving directory '/<>/deps/sdsl-lite/build' SUCCESS: sdsl was installed successfully! The sdsl include files are located in '/<>/include'. The library files are located in '/<>/lib'. Sample programs can be found in the examples-directory. Tests in the test-directory A cheat sheet in the extras/cheatsheet-directory. Have fun! Makefile:511: warning: pattern recipe did not update peer target 'lib/libdivsufsort64.a'. Makefile:511: warning: pattern recipe did not update peer target 'lib/libdivsufsort.a'. . ./source_me.sh && cd deps/ssw/src && make && ar rs /<>/lib/libssw.a ssw.o ssw_cpp.o && cp ssw_cpp.h ssw.h /<>/include make[3]: Entering directory '/<>/deps/ssw/src' x86_64-linux-gnu-gcc -c -o ssw.o ssw.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wall -pipe -O3 -I. x86_64-linux-gnu-gcc -o ssw_test ssw.o main.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wall -pipe -O3 -I. -lm -lz x86_64-linux-gnu-gcc -o example_c ssw.o example.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wall -pipe -O3 -I. -lm -lz x86_64-linux-gnu-g++ -c -o ssw_cpp.o ssw_cpp.cpp -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wall -pipe -O3 -I. cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ x86_64-linux-gnu-g++ -o example_cpp example.cpp ssw.o ssw_cpp.o -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wall -pipe -O3 -I. -lm -lz cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ x86_64-linux-gnu-gcc -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wall -pipe -O3 -I. -fPIC -shared -o libssw.so ssw.c make[3]: Leaving directory '/<>/deps/ssw/src' ar: creating /<>/lib/libssw.a . ./source_me.sh && cp -r deps/gcsa2/include/gcsa /<>/include/ && cd deps/gcsa2 && make directories && make lib/libgcsa2.a && mv lib/libgcsa2.a /<>/lib make[3]: Entering directory '/<>/deps/gcsa2' mkdir -p bin mkdir -p lib mkdir -p obj make[3]: Leaving directory '/<>/deps/gcsa2' make[3]: Entering directory '/<>/deps/gcsa2' /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/dbg.o src/dbg.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/files.o src/files.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gcsa.o src/gcsa.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/lcp.o src/lcp.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/path_graph.o src/path_graph.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/support.o src/support.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp ar rcs lib/libgcsa2.a obj/algorithms.o obj/dbg.o obj/files.o obj/gcsa.o obj/internal.o obj/lcp.o obj/path_graph.o obj/support.o obj/utils.o make[3]: Leaving directory '/<>/deps/gcsa2' . ./source_me.sh && cp -r deps/gbwt/include/gbwt /<>/include/ && cd deps/gbwt && make clean && make && mv lib/libgbwt.a /<>/lib make[3]: Entering directory '/<>/deps/gbwt' rm -rf bin lib obj rm -f *.o *.a build_gbwt build_ri merge_gbwt benchmark metadata_tool remove_seq cd tests && make clean make[4]: Entering directory '/<>/deps/gbwt/tests' rm -f test_bwtmerge test_metadata test_queries test_support test_variants *.o make[4]: Leaving directory '/<>/deps/gbwt/tests' make[3]: Leaving directory '/<>/deps/gbwt' make[3]: Entering directory '/<>/deps/gbwt' mkdir -p bin mkdir -p lib mkdir -p obj /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/bwtmerge.o src/bwtmerge.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/cached_gbwt.o src/cached_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/dynamic_gbwt.o src/dynamic_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/fast_locate.o src/fast_locate.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/files.o src/files.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbwt.o src/gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/metadata.o src/metadata.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/support.o src/support.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/test.o src/test.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/variants.o src/variants.cpp ar rcs lib/libgbwt.a obj/algorithms.o obj/bwtmerge.o obj/cached_gbwt.o obj/dynamic_gbwt.o obj/fast_locate.o obj/files.o obj/gbwt.o obj/internal.o obj/metadata.o obj/support.o obj/test.o obj/utils.o obj/variants.o /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/build_gbwt.o src/build_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/build_gbwt obj/build_gbwt.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/build_ri.o src/build_ri.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/build_ri obj/build_ri.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/merge_gbwt.o src/merge_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/merge_gbwt obj/merge_gbwt.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/benchmark.o src/benchmark.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/benchmark obj/benchmark.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/metadata_tool.o src/metadata_tool.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/metadata_tool obj/metadata_tool.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/remove_seq.o src/remove_seq.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/remove_seq obj/remove_seq.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 rm obj/build_ri.o obj/metadata_tool.o obj/benchmark.o obj/merge_gbwt.o obj/remove_seq.o obj/build_gbwt.o make[3]: Leaving directory '/<>/deps/gbwt' . ./source_me.sh && cd deps/libhandlegraph && rm -Rf build CMakeCache.txt CMakeFiles && mkdir build && cd build && CXXFLAGS="-std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2" cmake -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_PREFIX=/<> -DCMAKE_INSTALL_LIBDIR=lib .. && make && make install -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done libhandlegraph is root project or external_project -- Configuring done (1.5s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/libhandlegraph/build make[3]: Entering directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -S/<>/deps/libhandlegraph -B/<>/deps/libhandlegraph/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles /<>/deps/libhandlegraph/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_objs.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [ 2%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/deletable_handle_graph.cpp [ 5%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o -c /<>/deps/libhandlegraph/src/dfs.cpp [ 8%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/handle_graph.cpp [ 11%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/mutable_handle_graph.cpp [ 14%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o -c /<>/deps/libhandlegraph/src/path_metadata.cpp [ 17%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o -c /<>/deps/libhandlegraph/src/mutable_path_metadata.cpp [ 20%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/path_handle_graph.cpp [ 22%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/path_position_handle_graph.cpp [ 25%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/mutable_path_handle_graph.cpp [ 28%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/ranked_handle_graph.cpp [ 31%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o -c /<>/deps/libhandlegraph/src/serializable.cpp [ 34%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o -c /<>/deps/libhandlegraph/src/snarl_decomposition.cpp [ 37%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o -c /<>/deps/libhandlegraph/src/trivially_serializable.cpp [ 40%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/types.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/types.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/types.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o -c /<>/deps/libhandlegraph/src/types.cpp [ 42%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o -c /<>/deps/libhandlegraph/src/copy_graph.cpp [ 45%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o -c /<>/deps/libhandlegraph/src/append_graph.cpp [ 48%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o -c /<>/deps/libhandlegraph/src/are_equivalent.cpp [ 51%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o -c /<>/deps/libhandlegraph/src/find_tips.cpp [ 54%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o -c /<>/deps/libhandlegraph/src/topological_sort.cpp [ 57%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o -c /<>/deps/libhandlegraph/src/apply_orientations.cpp [ 60%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o -c /<>/deps/libhandlegraph/src/is_single_stranded.cpp [ 62%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o -c /<>/deps/libhandlegraph/src/count_walks.cpp [ 65%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o -c /<>/deps/libhandlegraph/src/eades_algorithm.cpp [ 68%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o -c /<>/deps/libhandlegraph/src/dagify.cpp In file included from /usr/x86_64-linux-gnu/include/c++/14/x86_64-linux-gnu/bits/c++allocator.h:33, from /usr/x86_64-linux-gnu/include/c++/14/bits/allocator.h:46, from /usr/x86_64-linux-gnu/include/c++/14/vector:63, from /<>/deps/libhandlegraph/src/dagify.cpp:8: In member function ‘void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = long int]’, inlined from ‘static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = long int]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/alloc_traits.h:550:23, inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:389:19, inlined from ‘std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:368:15, inlined from ‘std::vector<_Tp, _Alloc>::~vector() [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:738:7, inlined from ‘std::unordered_map handlegraph::algorithms::dagify(const handlegraph::HandleGraph*, handlegraph::MutableHandleGraph*, size_t)’ at /<>/deps/libhandlegraph/src/dagify.cpp:445:5: /usr/x86_64-linux-gnu/include/c++/14/bits/new_allocator.h:172:33: warning: ‘void operator delete(void*, std::size_t)’ called on pointer ‘’ with nonzero offset [1, 9223372036854775800] [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In member function ‘_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long int]’, inlined from ‘static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long int]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/alloc_traits.h:515:28, inlined from ‘std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:380:33, inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:398:44, inlined from ‘std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:334:26, inlined from ‘std::vector<_Tp, _Alloc>::vector(size_type, const value_type&, const allocator_type&) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:571:47, inlined from ‘std::unordered_map handlegraph::algorithms::dagify(const handlegraph::HandleGraph*, handlegraph::MutableHandleGraph*, size_t)’ at /<>/deps/libhandlegraph/src/dagify.cpp:327:85: /usr/x86_64-linux-gnu/include/c++/14/bits/new_allocator.h:151:55: note: returned from ‘void* operator new(std::size_t)’ 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ [ 71%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o -c /<>/deps/libhandlegraph/src/strongly_connected_components.cpp [ 74%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o -c /<>/deps/libhandlegraph/src/find_shortest_paths.cpp [ 77%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o -c /<>/deps/libhandlegraph/src/dijkstra.cpp [ 80%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o -c /<>/deps/libhandlegraph/src/is_acyclic.cpp [ 82%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o -c /<>/deps/libhandlegraph/src/reverse_complement.cpp [ 85%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o -c /<>/deps/libhandlegraph/src/split_strands.cpp [ 88%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o -c /<>/deps/libhandlegraph/src/chop.cpp [ 91%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o -c /<>/deps/libhandlegraph/src/weakly_connected_components.cpp [ 94%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o -c /<>/deps/libhandlegraph/src/extend.cpp make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 94%] Built target handlegraph_objs make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_shared.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [ 97%] Linking CXX shared library libhandlegraph.so /usr/bin/cmake -E cmake_link_script CMakeFiles/handlegraph_shared.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wl,--dependency-file=CMakeFiles/handlegraph_shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libhandlegraph.so -o libhandlegraph.so CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 97%] Built target handlegraph_shared make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [100%] Linking CXX static library libhandlegraph.a /usr/bin/cmake -P CMakeFiles/handlegraph_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/handlegraph_static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhandlegraph.a CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhandlegraph.a make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [100%] Built target handlegraph_static make[4]: Leaving directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles 0 make[3]: Leaving directory '/<>/deps/libhandlegraph/build' make[3]: Entering directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -S/<>/deps/libhandlegraph -B/<>/deps/libhandlegraph/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles /<>/deps/libhandlegraph/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_objs.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_objs.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 94%] Built target handlegraph_objs make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_shared.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_shared.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 97%] Built target handlegraph_shared make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_static.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [100%] Built target handlegraph_static make[4]: Leaving directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/libhandlegraph/build' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/libhandlegraph/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /<>/lib/libhandlegraph.so -- Installing: /<>/lib/libhandlegraph.a -- Up-to-date: /<>/include/handlegraph -- Up-to-date: /<>/include/handlegraph/serializable.hpp -- Up-to-date: /<>/include/handlegraph/util.hpp -- Up-to-date: /<>/include/handlegraph/types.hpp -- Up-to-date: /<>/include/handlegraph/trivially_serializable.hpp -- Up-to-date: /<>/include/handlegraph/snarl_decomposition.hpp -- Up-to-date: /<>/include/handlegraph/serializable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/path_position_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/path_metadata.hpp -- Up-to-date: /<>/include/handlegraph/path_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/named_node_back_translation.hpp -- Up-to-date: /<>/include/handlegraph/mutable_path_mutable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/mutable_path_metadata.hpp -- Up-to-date: /<>/include/handlegraph/mutable_path_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/mutable_path_deletable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/mutable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/iteratee.hpp -- Up-to-date: /<>/include/handlegraph/handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/expanding_overlay_graph.hpp -- Up-to-date: /<>/include/handlegraph/deletable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/buildable_snarl_decomposition.hpp -- Up-to-date: /<>/include/handlegraph/algorithms -- Up-to-date: /<>/include/handlegraph/algorithms/weakly_connected_components.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/topological_sort.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/strongly_connected_components.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/split_strands.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/reverse_complement.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/is_single_stranded.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/is_acyclic.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/internal -- Up-to-date: /<>/include/handlegraph/algorithms/internal/dfs.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/find_tips.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/find_shortest_paths.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/extend.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/eades_algorithm.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/dijkstra.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/dagify.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/count_walks.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/copy_graph.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/chop.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/are_equivalent.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/apply_orientations.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/append_graph.hpp -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphTargets.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphTargets-noconfig.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphConfig.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphConfigVersion.cmake make[3]: Leaving directory '/<>/deps/libhandlegraph/build' . ./source_me.sh && cp -r deps/gbwtgraph/include/gbwtgraph /<>/include/ && cd deps/gbwtgraph && make clean && make && mv lib/libgbwtgraph.a /<>/lib make[3]: Entering directory '/<>/deps/gbwtgraph' rm -rf bin lib obj rm -f *.o *.a gfa2gbwt cd tests && make clean make[4]: Entering directory '/<>/deps/gbwtgraph/tests' rm -f test_utils test_gbwtgraph test_cached_gbwtgraph test_gfa test_gbz test_minimizer test_index test_algorithms test_path_cover *.o make[4]: Leaving directory '/<>/deps/gbwtgraph/tests' make[3]: Leaving directory '/<>/deps/gbwtgraph' make[3]: Entering directory '/<>/deps/gbwtgraph' mkdir -p bin mkdir -p lib mkdir -p obj /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/cached_gbwtgraph.o src/cached_gbwtgraph.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbwtgraph.o src/gbwtgraph.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbz.o src/gbz.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gfa.o src/gfa.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/minimizer.o src/minimizer.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/path_cover.o src/path_cover.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp ar rcs lib/libgbwtgraph.a obj/algorithms.o obj/cached_gbwtgraph.o obj/gbwtgraph.o obj/gbz.o obj/gfa.o obj/internal.o obj/minimizer.o obj/path_cover.o obj/utils.o /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gfa2gbwt.o src/gfa2gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/gfa2gbwt obj/gfa2gbwt.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbz_stats.o src/gbz_stats.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/gbz_stats obj/gbz_stats.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/kmer_freq.o src/kmer_freq.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/kmer_freq obj/kmer_freq.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 rm obj/kmer_freq.o obj/gbz_stats.o obj/gfa2gbwt.o make[3]: Leaving directory '/<>/deps/gbwtgraph' . ./source_me.sh && cd deps/kff-cpp-api && rm -Rf build && mkdir build && cd build && cmake .. && make && cp kff_io.hpp /<>/include && mv libkff.a /<>/lib -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.5s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/kff-cpp-api/build make[3]: Entering directory '/<>/deps/kff-cpp-api/build' [ 16%] Building CXX object CMakeFiles/kff.dir/kff_io.cpp.o [ 33%] Linking CXX static library libkff.a [ 33%] Built target kff [ 50%] Building CXX object CMakeFiles/kff_example.dir/main.cpp.o [ 66%] Linking CXX executable kff_example [ 66%] Built target kff_example [ 83%] Building CXX object benchmarks/CMakeFiles/reader_bench.dir/reader.cpp.o [100%] Linking CXX executable reader_bench [100%] Built target reader_bench make[3]: Leaving directory '/<>/deps/kff-cpp-api/build' . ./source_me.sh && cd deps/gssw && make && cp lib/libgssw.a /<>/lib/ && cp src/gssw.h /<>/include/ make[3]: Entering directory '/<>/deps/gssw' x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wall -O3 -g -c -o obj/gssw.o src/gssw.c src/gssw.c: In function ‘gssw_graph_print’: src/gssw.c:1947:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1947 | fprintf(stdout, "GRAPH // node %llu %u %s\n", n->id, n->len, n->seq); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c:1951:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1951 | fprintf(stdout, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c:1951:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1951 | fprintf(stdout, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c: In function ‘gssw_graph_print_stderr’: src/gssw.c:1963:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1963 | fprintf(stderr, "GRAPH // node %llu %u %s\n", n->id, n->len, n->seq); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c:1967:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1967 | fprintf(stderr, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c:1967:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1967 | fprintf(stderr, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c: In function ‘gssw_graph_print_score_matrices’: src/gssw.c:1978:31: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1978 | fprintf(out, "node %llu\n", n->id); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_print_graph_cigar’: src/gssw.c:3623:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 3623 | fprintf(out, "%llu[", nc->node->id); | ~~~^ ~~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_create_seed_byte’: src/gssw.c:5095:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 5095 | fprintf(stderr, "failing is node %llu\n", prev[k]->id); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_create_seed_word’: src/gssw.c:5130:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 5130 | fprintf(stderr, "failing is node %llu\n", prev[k]->id); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_sw_software_byte’: src/gssw.c:277:5: warning: ‘__builtin_memcpy’ writing between 18446744071562067984 and 18446744073709551600 bytes into a region of size 9223372036854775807 [-Wstringop-overflow=] 277 | memcpy(scratch, to_unswizzle, size); | ^ In function ‘unswizzle_byte’, inlined from ‘gssw_sw_software_byte’ at src/gssw.c:405:9: src/gssw.c:271:35: note: destination object of size 9223372036854775807 allocated by ‘malloc’ 271 | uint8_t* scratch = (uint8_t*) malloc(size * sizeof(uint8_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/gssw.c: In function ‘gssw_sw_software_word’: src/gssw.c:1117:5: warning: ‘__builtin_memcpy’ writing between 18446744069414584336 and 18446744073709551600 bytes into a region of size 9223372036854775807 [-Wstringop-overflow=] 1117 | memcpy(scratch, to_unswizzle, size * sizeof(int16_t)); | ^ In function ‘unswizzle_word’, inlined from ‘gssw_sw_software_word’ at src/gssw.c:1249:9: src/gssw.c:1111:35: note: destination object of size 9223372036854775807 allocated by ‘malloc’ 1111 | int16_t* scratch = (int16_t*) malloc(size * sizeof(int16_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/gssw.c: In function ‘gssw_node_create’: src/gssw.c:4975:5: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 4975 | strncpy(n->seq, seq, len); n->seq[len] = 0; | ^ src/gssw.c:4971:19: note: length computed here 4971 | int32_t len = strlen(seq); | ^~~~~~~~~~~ # Make dest directory x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wall -O3 -g src/example.c -o bin/gssw_example obj/gssw.o -lm -lz x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wall -O3 -g src/example_adj.c -o bin/gssw_example_adj obj/gssw.o -lm -lz x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wall -O3 -g src/gssw_test.c -o bin/gssw_test obj/gssw.o -lm -lz ar rvs lib/libgssw.a obj/gssw.o ar: creating lib/libgssw.a a - obj/gssw.o make[3]: Leaving directory '/<>/deps/gssw' . ./source_me.sh && cd ./deps/sonLib && kyotoTycoonLib="" make && cp lib/sonLib.a /<>/lib/libsonlib.a && mkdir -p /<>/include/sonLib && cp lib/*.h /<>/include/sonLib make[3]: Entering directory '/<>/deps/sonLib' cd externalTools && make all make[4]: Entering directory '/<>/deps/sonLib/externalTools' cd cutest && make all make[5]: Entering directory '/<>/deps/sonLib/externalTools/cutest' x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -c CuTest.c ar rc cuTest.a *.o ranlib cuTest.a rm -f *.o mv cuTest.a ../../lib/ cp CuTest.h ../../lib/ make[5]: Leaving directory '/<>/deps/sonLib/externalTools/cutest' cd quicktree_1.1 && make all CC="x86_64-linux-gnu-gcc -std=c99" make[5]: Entering directory '/<>/deps/sonLib/externalTools/quicktree_1.1' x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/align.o ./src/align.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/cluster.o ./src/cluster.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/distancemat.o ./src/distancemat.c ./src/distancemat.c: In function ‘read_phylip_DistanceMatrix’: ./src/distancemat.c:390:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 390 | fscanf( handle, "%s", identifier ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/distancemat.c:397:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 397 | fscanf( handle, "%lf", &dist); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/options.o ./src/options.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/util.o ./src/util.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/sequence.o ./src/sequence.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/quicktree.o ./src/quicktree.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/buildtree.o ./src/buildtree.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/tree.o ./src/tree.c ./src/tree.c: In function ‘read_newhampshire_Tnode’: ./src/tree.c:393:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 393 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:406:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 406 | fscanf( handle, "%1s", &c); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:417:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 417 | fscanf( handle, "%1s", &c); /* should be ) */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:420:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 420 | fscanf( handle, "%1s", &c); /* should be : */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c: In function ‘read_newhampshire_Tree’: ./src/tree.c:468:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 468 | fscanf( handle, "("); | ^~~~~~~~~~~~~~~~~~~~ ./src/tree.c:475:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 475 | fscanf( handle, "%1s", &c ); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:484:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 484 | fscanf( handle, "%1s", &c ); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:493:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 493 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:496:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 496 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -g -o bin/quicktree ./obj/align.o ./obj/cluster.o ./obj/distancemat.o ./obj/options.o ./obj/util.o ./obj/sequence.o ./obj/quicktree.o ./obj/buildtree.o ./obj/tree.o -lm make[5]: Leaving directory '/<>/deps/sonLib/externalTools/quicktree_1.1' make[4]: Leaving directory '/<>/deps/sonLib/externalTools' cd C && make all make[4]: Entering directory '/<>/deps/sonLib/C' cp inc/avl.h ../lib/avl.h.tmp mv ../lib/avl.h.tmp ../lib/avl.h cp inc/bioioC.h ../lib/bioioC.h.tmp mv ../lib/bioioC.h.tmp ../lib/bioioC.h cp inc/commonC.h ../lib/commonC.h.tmp mv ../lib/commonC.h.tmp ../lib/commonC.h cp inc/fastCMaths.h ../lib/fastCMaths.h.tmp mv ../lib/fastCMaths.h.tmp ../lib/fastCMaths.h cp inc/hashTableC.h ../lib/hashTableC.h.tmp mv ../lib/hashTableC.h.tmp ../lib/hashTableC.h cp inc/hashTableC_itr.h ../lib/hashTableC_itr.h.tmp mv ../lib/hashTableC_itr.h.tmp ../lib/hashTableC_itr.h cp inc/hashTablePrivateC.h ../lib/hashTablePrivateC.h.tmp mv ../lib/hashTablePrivateC.h.tmp ../lib/hashTablePrivateC.h cp inc/jsmn.h ../lib/jsmn.h.tmp mv ../lib/jsmn.h.tmp ../lib/jsmn.h cp inc/pairwiseAlignment.h ../lib/pairwiseAlignment.h.tmp mv ../lib/pairwiseAlignment.h.tmp ../lib/pairwiseAlignment.h cp inc/sonLib.h ../lib/sonLib.h.tmp mv ../lib/sonLib.h.tmp ../lib/sonLib.h cp inc/sonLibAlign.h ../lib/sonLibAlign.h.tmp mv ../lib/sonLibAlign.h.tmp ../lib/sonLibAlign.h cp inc/sonLibCache.h ../lib/sonLibCache.h.tmp mv ../lib/sonLibCache.h.tmp ../lib/sonLibCache.h cp inc/sonLibCommon.h ../lib/sonLibCommon.h.tmp mv ../lib/sonLibCommon.h.tmp ../lib/sonLibCommon.h cp inc/sonLibCompression.h ../lib/sonLibCompression.h.tmp mv ../lib/sonLibCompression.h.tmp ../lib/sonLibCompression.h cp inc/sonLibConnectivity.h ../lib/sonLibConnectivity.h.tmp mv ../lib/sonLibConnectivity.h.tmp ../lib/sonLibConnectivity.h cp inc/sonLibEulerTour.h ../lib/sonLibEulerTour.h.tmp mv ../lib/sonLibEulerTour.h.tmp ../lib/sonLibEulerTour.h cp inc/sonLibExcept.h ../lib/sonLibExcept.h.tmp mv ../lib/sonLibExcept.h.tmp ../lib/sonLibExcept.h cp inc/sonLibFile.h ../lib/sonLibFile.h.tmp mv ../lib/sonLibFile.h.tmp ../lib/sonLibFile.h cp inc/sonLibHash.h ../lib/sonLibHash.h.tmp mv ../lib/sonLibHash.h.tmp ../lib/sonLibHash.h cp inc/sonLibKVDatabase.h ../lib/sonLibKVDatabase.h.tmp mv ../lib/sonLibKVDatabase.h.tmp ../lib/sonLibKVDatabase.h cp inc/sonLibKVDatabaseConf.h ../lib/sonLibKVDatabaseConf.h.tmp mv ../lib/sonLibKVDatabaseConf.h.tmp ../lib/sonLibKVDatabaseConf.h cp inc/sonLibList.h ../lib/sonLibList.h.tmp mv ../lib/sonLibList.h.tmp ../lib/sonLibList.h cp inc/sonLibMath.h ../lib/sonLibMath.h.tmp mv ../lib/sonLibMath.h.tmp ../lib/sonLibMath.h cp inc/sonLibNaiveConnectivity.h ../lib/sonLibNaiveConnectivity.h.tmp mv ../lib/sonLibNaiveConnectivity.h.tmp ../lib/sonLibNaiveConnectivity.h cp inc/sonLibRandom.h ../lib/sonLibRandom.h.tmp mv ../lib/sonLibRandom.h.tmp ../lib/sonLibRandom.h cp inc/sonLibSet.h ../lib/sonLibSet.h.tmp mv ../lib/sonLibSet.h.tmp ../lib/sonLibSet.h cp inc/sonLibSortedSet.h ../lib/sonLibSortedSet.h.tmp mv ../lib/sonLibSortedSet.h.tmp ../lib/sonLibSortedSet.h cp inc/sonLibString.h ../lib/sonLibString.h.tmp mv ../lib/sonLibString.h.tmp ../lib/sonLibString.h cp inc/sonLibTreap.h ../lib/sonLibTreap.h.tmp mv ../lib/sonLibTreap.h.tmp ../lib/sonLibTreap.h cp inc/sonLibTree.h ../lib/sonLibTree.h.tmp mv ../lib/sonLibTree.h.tmp ../lib/sonLibTree.h cp inc/sonLibTuples.h ../lib/sonLibTuples.h.tmp mv ../lib/sonLibTuples.h.tmp ../lib/sonLibTuples.h cp inc/sonLibTypes.h ../lib/sonLibTypes.h.tmp mv ../lib/sonLibTypes.h.tmp ../lib/sonLibTypes.h cp inc/stGraph.h ../lib/stGraph.h.tmp mv ../lib/stGraph.h.tmp ../lib/stGraph.h cp inc/stJson.h ../lib/stJson.h.tmp mv ../lib/stJson.h.tmp ../lib/stJson.h cp inc/stMatrix.h ../lib/stMatrix.h.tmp mv ../lib/stMatrix.h.tmp ../lib/stMatrix.h cp inc/stPhylogeny.h ../lib/stPhylogeny.h.tmp mv ../lib/stPhylogeny.h.tmp ../lib/stPhylogeny.h cp inc/stPosetAlignment.h ../lib/stPosetAlignment.h.tmp mv ../lib/stPosetAlignment.h.tmp ../lib/stPosetAlignment.h cp inc/stSafeC.h ../lib/stSafeC.h.tmp mv ../lib/stSafeC.h.tmp ../lib/stSafeC.h cp inc/stSpimapLayer.h ../lib/stSpimapLayer.h.tmp mv ../lib/stSpimapLayer.h.tmp ../lib/stSpimapLayer.h cp inc/stThreadPool.h ../lib/stThreadPool.h.tmp mv ../lib/stThreadPool.h.tmp ../lib/stThreadPool.h cp inc/stUnionFind.h ../lib/stUnionFind.h.tmp mv ../lib/stUnionFind.h.tmp ../lib/stUnionFind.h x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -I inc -I ../lib/ -c impl/*.c cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/bioioC.c: In function ‘parseInt’: impl/bioioC.c:265:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 265 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:265:15: note: did you mean to dereference the pointer? 265 | while(*string != '\0' && !isspace(**string)) { | ^ impl/bioioC.c: In function ‘parseFloat’: impl/bioioC.c:286:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 286 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:286:15: note: did you mean to dereference the pointer? 286 | while(*string != '\0' && !isspace(**string)) { | ^ impl/bioioC.c: In function ‘parseString’: impl/bioioC.c:307:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 307 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:307:15: note: did you mean to dereference the pointer? 307 | while(*string != '\0' && !isspace(**string)) { | ^ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibCompression.c: In function ‘stCompression_compress’: impl/sonLibCompression.c:37:9: warning: ‘LZ4_compress’ is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] 37 | int64_t bytesWritten = LZ4_compress(((char*)data) + inputOffset, buffer+(outputOffset+1), subChunk ? ST_LZ4_CHUNK_SIZE : sizeInBytes - inputOffset); | ^~~~~~~ In file included from /usr/include/lz4hc.h:43, from impl/sonLibCompression.c:15: /usr/include/lz4.h:806:75: note: declared here 806 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize); | ^~~~~~~~~~~~ impl/sonLibCompression.c: In function ‘stCompression_decompress’: impl/sonLibCompression.c:60:13: warning: ‘LZ4_uncompress’ is deprecated: use LZ4_decompress_fast() instead [-Wdeprecated-declarations] 60 | int64_t bytesRead = LZ4_uncompress(((char *)compressedData)+inputOffset, | ^~~~~~~ /usr/include/lz4.h:814:68: note: declared here 814 | LZ4_DEPRECATED("use LZ4_decompress_fast() instead") LZ4LIB_API int LZ4_uncompress (const char* source, char* dest, int outputSize); | ^~~~~~~~~~~~~~ impl/sonLibCompression.c:72:17: warning: ‘LZ4_uncompress_unknownOutputSize’ is deprecated: use LZ4_decompress_safe() instead [-Wdeprecated-declarations] 72 | int64_t bytesWritten = LZ4_uncompress_unknownOutputSize(((char *)compressedData)+inputOffset, | ^~~~~~~ /usr/include/lz4.h:815:68: note: declared here 815 | LZ4_DEPRECATED("use LZ4_decompress_safe() instead") LZ4LIB_API int LZ4_uncompress_unknownOutputSize (const char* source, char* dest, int isize, int maxOutputSize); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibConnectivity.c: In function ‘stConnectivity_addEdge’: impl/sonLibConnectivity.c:248:33: warning: pointer ‘component1’ may be used after ‘free’ [-Wuse-after-free] 248 | connectivity->mergeCallback(connectivity->mergeExtraData, component1, component2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘stConnectedComponent_destruct’, inlined from ‘stConnectivity_addEdge’ at impl/sonLibConnectivity.c:238:3: impl/sonLibConnectivity.c:608:9: note: call to ‘free’ here 608 | free(comp); | ^~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibTreap.c: In function ‘stTreap_remove’: impl/sonLibTreap.c:331:18: warning: pointer ‘rmnode’ used after ‘free’ [-Wuse-after-free] 331 | stTreap *p = rmnode->parent; | ^ impl/sonLibTreap.c:329:9: note: call to ‘free’ here 329 | free(rmnode); | ^~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C x86_64-linux-gnu-g++ -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall -funroll-loops -DNDEBUG -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wl,-z,relro -Wl,-z,now -I inc -I ../lib/ -c impl/*.cpp ar rc sonLib.a *.o ../externalTools/quicktree_1.1/obj/buildtree.o ../externalTools/quicktree_1.1/obj/cluster.o ../externalTools/quicktree_1.1/obj/distancemat.o ../externalTools/quicktree_1.1/obj/options.o ../externalTools/quicktree_1.1/obj/sequence.o ../externalTools/quicktree_1.1/obj/tree.o ../externalTools/quicktree_1.1/obj/util.o ranlib sonLib.a rm *.o mv sonLib.a ../lib/ x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -I inc -I ../lib -o ../bin/sonLibTests.tmp tests/allTests.c tests/sonLib*.c tests/st* ../lib/sonLib.a ../lib/cuTest.a -lz -lm -lm -lstdc++ -lpthread -llz4 mv ../bin/sonLibTests.tmp ../bin/sonLibTests x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -I inc -I ../lib -I tests -o ../bin/sonLib_kvDatabaseTest.tmp tests/kvDatabaseTest.c tests/kvDatabaseTestCommon.c ../lib/sonLib.a ../lib/cuTest.a -lz -lm -lm mv ../bin/sonLib_kvDatabaseTest.tmp ../bin/sonLib_kvDatabaseTest x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -I inc -I ../lib -o ../bin/sonLib_cigarTest.tmp tests/cigarsTest.c ../lib/sonLib.a -lm mv ../bin/sonLib_cigarTest.tmp ../bin/sonLib_cigarTest x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -I inc -I ../lib -o ../bin/sonLib_fastaCTest.tmp tests/fastaCTest.c ../lib/sonLib.a -lm mv ../bin/sonLib_fastaCTest.tmp ../bin/sonLib_fastaCTest make[4]: Leaving directory '/<>/deps/sonLib/C' cp sonLib_daemonize.py ./bin/sonLib_daemonize.py chmod +x ./bin/sonLib_daemonize.py make[3]: Leaving directory '/<>/deps/sonLib' . ./source_me.sh && cd ./deps/pinchesAndCacti && make && cd /<>/./deps/sonLib && cp lib/stPinchesAndCacti.a /<>/lib/libpinchesandcacti.a && cp lib/3EdgeConnected.a /<>/lib/lib3edgeconnected.a && mkdir -p /<>/include/sonLib && cp lib/*.h /<>/include/sonLib make[3]: Entering directory '/<>/deps/pinchesAndCacti' cd externalTools && make all make[4]: Entering directory '/<>/deps/pinchesAndCacti/externalTools' cd threeEdgeConnected && make all make[5]: Entering directory '/<>/deps/pinchesAndCacti/externalTools/threeEdgeConnected' x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I ../..//../sonLib/lib/ -c impl/*.c ar rc 3EdgeConnected.a *.o ranlib 3EdgeConnected.a rm *.o mv 3EdgeConnected.a ../..//../sonLib/lib/ cp inc/*.h ../..//../sonLib/lib/ x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -I inc -I../..//../sonLib/lib -o ../..//../sonLib/bin/3EdgeTests tests/*.c ../..//../sonLib/lib/3EdgeConnected.a ../..//../sonLib/lib/sonLib.a ../..//../sonLib/lib/cuTest.a -lz -lm make[5]: Leaving directory '/<>/deps/pinchesAndCacti/externalTools/threeEdgeConnected' make[4]: Leaving directory '/<>/deps/pinchesAndCacti/externalTools' x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -I inc -I .//../sonLib/lib/ -c impl/*.c ar rc stPinchesAndCacti.a *.o ranlib stPinchesAndCacti.a rm *.o mv stPinchesAndCacti.a .//../sonLib/lib/ cp inc/*.h .//../sonLib/lib/ x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -Wl,-z,relro -Wl,-z,now -I inc -I impl -I.//../sonLib/lib -o .//../sonLib/bin/stPinchesAndCactiTests tests/*.c impl/*.c .//../sonLib/lib/sonLib.a .//../sonLib/lib/cuTest.a -lz -lm .//../sonLib/lib/3EdgeConnected.a make[3]: Leaving directory '/<>/deps/pinchesAndCacti' . ./source_me.sh && cd deps/sublinear-Li-Stephens && make clean && INCLUDE_FLAGS="-I/<>/include" make libs && cp lib/libsublinearLS.a /<>/lib/ && mkdir -p /<>/include/sublinearLS && cp src/*.hpp /<>/include/sublinearLS/ make[3]: Entering directory '/<>/deps/sublinear-Li-Stephens' rm -f /<>/deps/sublinear-Li-Stephens/bin/* /<>/deps/sublinear-Li-Stephens/obj/*.o /<>/deps/sublinear-Li-Stephens/obj/test/*.o /<>/deps/sublinear-Li-Stephens/lib/* make[3]: Leaving directory '/<>/deps/sublinear-Li-Stephens' make[3]: Entering directory '/<>/deps/sublinear-Li-Stephens' if [ ! -d /<>/deps/sublinear-Li-Stephens/obj ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/obj; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/obj/test ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/obj/test; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/bin ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/bin; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/lib ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/lib; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/deps ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/deps; fi x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/math.cpp -o /<>/deps/sublinear-Li-Stephens/obj/math.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/reference.cpp -o /<>/deps/sublinear-Li-Stephens/obj/reference.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/probability.cpp -o /<>/deps/sublinear-Li-Stephens/obj/probability.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/input_haplotype.cpp -o /<>/deps/sublinear-Li-Stephens/obj/input_haplotype.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/delay_multiplier.cpp -o /<>/deps/sublinear-Li-Stephens/obj/delay_multiplier.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/DP_map.cpp -o /<>/deps/sublinear-Li-Stephens/obj/DP_map.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/penalty_set.cpp -o /<>/deps/sublinear-Li-Stephens/obj/penalty_set.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++11 -g -Wno-error=return-type -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/allele.cpp -o /<>/deps/sublinear-Li-Stephens/obj/allele.o /<>/deps/sublinear-Li-Stephens/src/allele.cpp: In function ‘char allele::to_char(alleleValue)’: /<>/deps/sublinear-Li-Stephens/src/allele.cpp:20:1: warning: control reaches end of non-void function [-Wreturn-type] 20 | } | ^ x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/row_set.cpp -o /<>/deps/sublinear-Li-Stephens/obj/row_set.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++11 -g -Wno-error=return-type -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_node.o /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp: In member function ‘size_t haplotypeStateNode::node_to_child_index(const haplotypeStateNode*) const’: /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp:96:1: warning: control reaches end of non-void function [-Wreturn-type] 96 | } | ^ x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_state_tree.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_tree.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_manager.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_manager.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/set_of_extensions.cpp -o /<>/deps/sublinear-Li-Stephens/obj/set_of_extensions.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/reference_sequence.cpp -o /<>/deps/sublinear-Li-Stephens/obj/reference_sequence.o ar rc /<>/deps/sublinear-Li-Stephens/lib/libsublinearLS.a /<>/deps/sublinear-Li-Stephens/obj/math.o /<>/deps/sublinear-Li-Stephens/obj/reference.o /<>/deps/sublinear-Li-Stephens/obj/probability.o /<>/deps/sublinear-Li-Stephens/obj/input_haplotype.o /<>/deps/sublinear-Li-Stephens/obj/delay_multiplier.o /<>/deps/sublinear-Li-Stephens/obj/DP_map.o /<>/deps/sublinear-Li-Stephens/obj/penalty_set.o /<>/deps/sublinear-Li-Stephens/obj/allele.o /<>/deps/sublinear-Li-Stephens/obj/row_set.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_node.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_tree.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_manager.o /<>/deps/sublinear-Li-Stephens/obj/set_of_extensions.o /<>/deps/sublinear-Li-Stephens/obj/reference_sequence.o ranlib /<>/deps/sublinear-Li-Stephens/lib/libsublinearLS.a make[3]: Leaving directory '/<>/deps/sublinear-Li-Stephens' . ./source_me.sh && cd deps/structures && make clean && make lib/libstructures.a && cp lib/libstructures.a /<>/lib/ && cp -r src/include/structures /<>/include/ make[3]: Entering directory '/<>/deps/structures' if [ ! -d bin ]; then mkdir -p bin; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -d lib ]; then mkdir -p lib; fi find bin obj lib -type f -delete make[3]: Leaving directory '/<>/deps/structures' make[3]: Entering directory '/<>/deps/structures' if [ ! -d bin ]; then mkdir -p bin; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -d lib ]; then mkdir -p lib; fi x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -c src/union_find.cpp -o obj/union_find.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -c src/suffix_tree.cpp -o obj/suffix_tree.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -c src/stable_double.cpp -o obj/stable_double.o rm -f lib/libstructures.a ar rs lib/libstructures.a obj/union_find.o obj/suffix_tree.o obj/stable_double.o ar: creating lib/libstructures.a make[3]: Leaving directory '/<>/deps/structures' rm -f lib/cleaned_old_protobuf* rm -f lib/libproto* lib/pkgconfig/protobuf* bin/protoc rm -Rf include/google/protobuf deps/protobuf touch lib/cleaned_old_protobuf_v003 rm -f /<>/include/vg.pb.h /<>/include/vg/vg.pb.h rm -Rf /<>/include/vg/io/ . ./source_me.sh && export CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp" && export LDFLAGS="-Wl,-z,relro -Wl,-z,now -L/<>/lib" && cd deps/libvgio && rm -Rf CMakeCache.txt CMakeFiles *.cmake install_manifest.txt *.pb.cc *.pb.h *.a && rm -rf build-vg && mkdir build-vg && cd build-vg && PKG_CONFIG_PATH=/<>/lib/pkgconfig: cmake -DCMAKE_CXX_STANDARD=14 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_PREFIX_PATH="/usr;/" -DCMAKE_INSTALL_PREFIX=/<> -DCMAKE_INSTALL_LIBDIR=lib .. && make clean && VERBOSE=1 make && make install -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") Building libvgio for C++ 14 -- Found PkgConfig: /usr/bin/x86_64-linux-gnu-pkg-config (found version "1.8.1") -- Could NOT find Protobuf (missing: Protobuf_DIR) No installed Protobuf has registered itself with CMake. -- Found Protobuf: /usr/lib/x86_64-linux-gnu/libprotobuf.so (found version "3.21.12") Found Protobuf using FindProtobuf.cmake -- Found Threads: TRUE Using real Threads library -- Checking for module 'htslib' -- Found htslib, version 1.21 -- Checking for module 'jansson' -- Found jansson, version 2.14 Using installed libhandlegraph -- Configuring done (2.6s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/libvgio/build-vg make[3]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/Makefile2 clean make[4]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/link_target.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/vgio.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/vgio_static.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/test_libvgio.dir/build.make CMakeFiles/test_libvgio.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/test_libvgio.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make[4]: Leaving directory '/<>/deps/libvgio/build-vg' make[3]: Leaving directory '/<>/deps/libvgio/build-vg' make[3]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -S/<>/deps/libvgio -B/<>/deps/libvgio/build-vg --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles /<>/deps/libvgio/build-vg//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/link_target.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E create_symlink . vg make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 0%] Built target link_target make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 2%] Running cpp protocol buffer compiler on deps/vg.proto /usr/bin/protoc --cpp_out :/<>/deps/libvgio/build-vg -I /<>/deps/libvgio/deps /<>/deps/libvgio/deps/vg.proto cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 5%] Building CXX object CMakeFiles/vgio.dir/vg.pb.cc.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/vg.pb.cc.o -MF CMakeFiles/vgio.dir/vg.pb.cc.o.d -o CMakeFiles/vgio.dir/vg.pb.cc.o -c /<>/deps/libvgio/build-vg/vg.pb.cc [ 8%] Building CXX object CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o -MF CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o.d -o CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o -c /<>/deps/libvgio/src/alignment_emitter.cpp [ 11%] Building CXX object CMakeFiles/vgio.dir/src/alignment_io.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/alignment_io.cpp.o -MF CMakeFiles/vgio.dir/src/alignment_io.cpp.o.d -o CMakeFiles/vgio.dir/src/alignment_io.cpp.o -c /<>/deps/libvgio/src/alignment_io.cpp [ 14%] Building CXX object CMakeFiles/vgio.dir/src/basic_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/basic_stream.cpp.o -MF CMakeFiles/vgio.dir/src/basic_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/basic_stream.cpp.o -c /<>/deps/libvgio/src/basic_stream.cpp [ 17%] Building CXX object CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o -MF CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_input_stream.cpp [ 20%] Building CXX object CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o -MF CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_output_stream.cpp [ 23%] Building CXX object CMakeFiles/vgio.dir/src/edit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/edit.cpp.o -MF CMakeFiles/vgio.dir/src/edit.cpp.o.d -o CMakeFiles/vgio.dir/src/edit.cpp.o -c /<>/deps/libvgio/src/edit.cpp [ 26%] Building CXX object CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o -MF CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o.d -o CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o -c /<>/deps/libvgio/src/hfile_cppstream.cpp [ 29%] Building CXX object CMakeFiles/vgio.dir/src/json2pb.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/json2pb.cpp.o -MF CMakeFiles/vgio.dir/src/json2pb.cpp.o.d -o CMakeFiles/vgio.dir/src/json2pb.cpp.o -c /<>/deps/libvgio/src/json2pb.cpp [ 32%] Building CXX object CMakeFiles/vgio.dir/src/message_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/message_emitter.cpp.o -MF CMakeFiles/vgio.dir/src/message_emitter.cpp.o.d -o CMakeFiles/vgio.dir/src/message_emitter.cpp.o -c /<>/deps/libvgio/src/message_emitter.cpp [ 35%] Building CXX object CMakeFiles/vgio.dir/src/message_iterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/message_iterator.cpp.o -MF CMakeFiles/vgio.dir/src/message_iterator.cpp.o.d -o CMakeFiles/vgio.dir/src/message_iterator.cpp.o -c /<>/deps/libvgio/src/message_iterator.cpp [ 38%] Building CXX object CMakeFiles/vgio.dir/src/registry.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/registry.cpp.o -MF CMakeFiles/vgio.dir/src/registry.cpp.o.d -o CMakeFiles/vgio.dir/src/registry.cpp.o -c /<>/deps/libvgio/src/registry.cpp [ 41%] Building CXX object CMakeFiles/vgio.dir/src/stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/stream.cpp.o -MF CMakeFiles/vgio.dir/src/stream.cpp.o.d -o CMakeFiles/vgio.dir/src/stream.cpp.o -c /<>/deps/libvgio/src/stream.cpp [ 44%] Building CXX object CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o -MF CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o.d -o CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o -c /<>/deps/libvgio/src/stream_multiplexer.cpp [ 47%] Building CXX object CMakeFiles/vgio.dir/src/vpkg.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/vpkg.cpp.o -MF CMakeFiles/vgio.dir/src/vpkg.cpp.o.d -o CMakeFiles/vgio.dir/src/vpkg.cpp.o -c /<>/deps/libvgio/src/vpkg.cpp [ 50%] Linking CXX shared library libvgio.so /usr/bin/cmake -E cmake_link_script CMakeFiles/vgio.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -Wl,--dependency-file=CMakeFiles/vgio.dir/link.d -Wl,-z,relro -Wl,-z,now -L/<>/lib -shared -Wl,-soname,libvgio.so -o libvgio.so CMakeFiles/vgio.dir/vg.pb.cc.o CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o CMakeFiles/vgio.dir/src/alignment_io.cpp.o CMakeFiles/vgio.dir/src/basic_stream.cpp.o CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o CMakeFiles/vgio.dir/src/edit.cpp.o CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o CMakeFiles/vgio.dir/src/json2pb.cpp.o CMakeFiles/vgio.dir/src/message_emitter.cpp.o CMakeFiles/vgio.dir/src/message_iterator.cpp.o CMakeFiles/vgio.dir/src/registry.cpp.o CMakeFiles/vgio.dir/src/stream.cpp.o CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o CMakeFiles/vgio.dir/src/vpkg.cpp.o /usr/lib/x86_64-linux-gnu/libprotobuf.so -lhts -ljansson /<>/lib/libhandlegraph.so make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 50%] Built target vgio make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 52%] Building CXX object CMakeFiles/vgio_static.dir/vg.pb.cc.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/vg.pb.cc.o -MF CMakeFiles/vgio_static.dir/vg.pb.cc.o.d -o CMakeFiles/vgio_static.dir/vg.pb.cc.o -c /<>/deps/libvgio/build-vg/vg.pb.cc [ 55%] Building CXX object CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o -MF CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o.d -o CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o -c /<>/deps/libvgio/src/alignment_emitter.cpp [ 58%] Building CXX object CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o -MF CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o.d -o CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o -c /<>/deps/libvgio/src/alignment_io.cpp [ 61%] Building CXX object CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o -c /<>/deps/libvgio/src/basic_stream.cpp [ 64%] Building CXX object CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_input_stream.cpp [ 67%] Building CXX object CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_output_stream.cpp [ 70%] Building CXX object CMakeFiles/vgio_static.dir/src/edit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/edit.cpp.o -MF CMakeFiles/vgio_static.dir/src/edit.cpp.o.d -o CMakeFiles/vgio_static.dir/src/edit.cpp.o -c /<>/deps/libvgio/src/edit.cpp [ 73%] Building CXX object CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o -MF CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o -c /<>/deps/libvgio/src/hfile_cppstream.cpp [ 76%] Building CXX object CMakeFiles/vgio_static.dir/src/json2pb.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/json2pb.cpp.o -MF CMakeFiles/vgio_static.dir/src/json2pb.cpp.o.d -o CMakeFiles/vgio_static.dir/src/json2pb.cpp.o -c /<>/deps/libvgio/src/json2pb.cpp [ 79%] Building CXX object CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o -MF CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o.d -o CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o -c /<>/deps/libvgio/src/message_emitter.cpp [ 82%] Building CXX object CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o -MF CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o.d -o CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o -c /<>/deps/libvgio/src/message_iterator.cpp [ 85%] Building CXX object CMakeFiles/vgio_static.dir/src/registry.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/registry.cpp.o -MF CMakeFiles/vgio_static.dir/src/registry.cpp.o.d -o CMakeFiles/vgio_static.dir/src/registry.cpp.o -c /<>/deps/libvgio/src/registry.cpp [ 88%] Building CXX object CMakeFiles/vgio_static.dir/src/stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/stream.cpp.o -c /<>/deps/libvgio/src/stream.cpp [ 91%] Building CXX object CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o -MF CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o.d -o CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o -c /<>/deps/libvgio/src/stream_multiplexer.cpp [ 94%] Building CXX object CMakeFiles/vgio_static.dir/src/vpkg.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/vpkg.cpp.o -MF CMakeFiles/vgio_static.dir/src/vpkg.cpp.o.d -o CMakeFiles/vgio_static.dir/src/vpkg.cpp.o -c /<>/deps/libvgio/src/vpkg.cpp [ 97%] Linking CXX static library libvgio.a /usr/bin/cmake -P CMakeFiles/vgio_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/vgio_static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libvgio.a CMakeFiles/vgio_static.dir/vg.pb.cc.o CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o CMakeFiles/vgio_static.dir/src/edit.cpp.o CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o CMakeFiles/vgio_static.dir/src/json2pb.cpp.o CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o CMakeFiles/vgio_static.dir/src/registry.cpp.o CMakeFiles/vgio_static.dir/src/stream.cpp.o CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o CMakeFiles/vgio_static.dir/src/vpkg.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libvgio.a make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [100%] Built target vgio_static make[4]: Leaving directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles 0 make[3]: Leaving directory '/<>/deps/libvgio/build-vg' make[3]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -S/<>/deps/libvgio -B/<>/deps/libvgio/build-vg --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles /<>/deps/libvgio/build-vg//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/link_target.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E create_symlink . vg make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 0%] Built target link_target make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' make[5]: Nothing to be done for 'CMakeFiles/vgio.dir/build'. make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 50%] Built target vgio make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' make[5]: Nothing to be done for 'CMakeFiles/vgio_static.dir/build'. make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [100%] Built target vgio_static make[4]: Leaving directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/libvgio/build-vg' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/libvgio/build-vg' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /<>/lib/libvgio.so -- Installing: /<>/lib/libvgio.a -- Up-to-date: /<>/include -- Up-to-date: /<>/include/vg -- Installing: /<>/include/vg/io -- Installing: /<>/include/vg/io/vpkg.hpp -- Installing: /<>/include/vg/io/stream_multiplexer.hpp -- Installing: /<>/include/vg/io/stream.hpp -- Installing: /<>/include/vg/io/registry.hpp -- Installing: /<>/include/vg/io/protobuf_iterator.hpp -- Installing: /<>/include/vg/io/protobuf_emitter.hpp -- Installing: /<>/include/vg/io/message_iterator.hpp -- Installing: /<>/include/vg/io/message_emitter.hpp -- Installing: /<>/include/vg/io/loader.hpp -- Installing: /<>/include/vg/io/json2pb.h -- Installing: /<>/include/vg/io/hfile_internal.hpp -- Installing: /<>/include/vg/io/hfile_cppstream.hpp -- Installing: /<>/include/vg/io/gafkluge.hpp -- Installing: /<>/include/vg/io/fdstream.hpp -- Installing: /<>/include/vg/io/edit.hpp -- Installing: /<>/include/vg/io/blocked_gzip_output_stream.hpp -- Installing: /<>/include/vg/io/blocked_gzip_input_stream.hpp -- Installing: /<>/include/vg/io/basic_stream.hpp -- Installing: /<>/include/vg/io/alignment_io.hpp -- Installing: /<>/include/vg/io/alignment_emitter.hpp -- Installing: /<>/include/vg/vg.pb.h -- Installing: /<>/lib/cmake/VGio/VGioTargets.cmake -- Installing: /<>/lib/cmake/VGio/VGioTargets-noconfig.cmake -- Installing: /<>/lib/cmake/VGio/VGioConfig.cmake -- Installing: /<>/lib/cmake/VGio/VGioConfigVersion.cmake make[3]: Leaving directory '/<>/deps/libvgio/build-vg' rm -Rf include/dynamic.hpp include/dynamic # annoyingly doesn't have an install option on the cmake, so we manually move their external dependency headers cd /<>/deps/DYNAMIC && rm -Rf build && mkdir -p build && cd build && export CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp" && cmake -DCMAKE_VERBOSE_MAKEFILE=ON .. && make CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Setting build type to 'Release' as none was specified. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Building in Release mode -- Configuring done (1.6s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/DYNAMIC/build make[3]: Entering directory '/<>/deps/DYNAMIC/build' /usr/bin/cmake -S/<>/deps/DYNAMIC -B/<>/deps/DYNAMIC/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/DYNAMIC/build/CMakeFiles /<>/deps/DYNAMIC/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/DYNAMIC/build' make -f CMakeFiles/debug.dir/build.make CMakeFiles/debug.dir/depend make[5]: Entering directory '/<>/deps/DYNAMIC/build' cd /<>/deps/DYNAMIC/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/DYNAMIC /<>/deps/DYNAMIC /<>/deps/DYNAMIC/build /<>/deps/DYNAMIC/build /<>/deps/DYNAMIC/build/CMakeFiles/debug.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/DYNAMIC/build' make -f CMakeFiles/debug.dir/build.make CMakeFiles/debug.dir/build make[5]: Entering directory '/<>/deps/DYNAMIC/build' [ 6%] Building CXX object CMakeFiles/debug.dir/debug.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/DYNAMIC/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mavx -fopenmp --std=c++11 -O3 -DNDEBUG -ggdb -Ofast -fstrict-aliasing -DNDEBUG -march=native -MD -MT CMakeFiles/debug.dir/debug.cpp.o -MF CMakeFiles/debug.dir/debug.cpp.o.d -o CMakeFiles/debug.dir/debug.cpp.o -c /<>/deps/DYNAMIC/debug.cpp cc1plus: error: bad value ‘native’ for ‘-march=’ switch cc1plus: note: valid arguments to ‘-march=’ switch are: nocona core2 nehalem corei7 westmere sandybridge corei7-avx ivybridge core-avx-i haswell core-avx2 broadwell skylake skylake-avx512 cannonlake icelake-client rocketlake icelake-server cascadelake tigerlake cooperlake sapphirerapids emeraldrapids alderlake raptorlake meteorlake graniterapids graniterapids-d arrowlake arrowlake-s lunarlake pantherlake bonnell atom silvermont slm goldmont goldmont-plus tremont gracemont sierraforest grandridge clearwaterforest knl knm x86-64 x86-64-v2 x86-64-v3 x86-64-v4 eden-x2 nano nano-1000 nano-2000 nano-3000 nano-x2 eden-x4 nano-x4 lujiazui yongfeng k8 k8-sse3 opteron opteron-sse3 athlon64 athlon64-sse3 athlon-fx amdfam10 barcelona bdver1 bdver2 bdver3 bdver4 znver1 znver2 znver3 znver4 znver5 btver1 btver2 make[5]: *** [CMakeFiles/debug.dir/build.make:82: CMakeFiles/debug.dir/debug.cpp.o] Error 1 make[5]: Leaving directory '/<>/deps/DYNAMIC/build' make[4]: *** [CMakeFiles/Makefile2:111: CMakeFiles/debug.dir/all] Error 2 make[4]: Leaving directory '/<>/deps/DYNAMIC/build' make[3]: *** [Makefile:94: all] Error 2 make[3]: Leaving directory '/<>/deps/DYNAMIC/build' make[2]: *** [Makefile:607: include/dynamic/dynamic.hpp] Error 2 make[2]: Leaving directory '/<>' dh_auto_build: error: make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc SFX=-avx all test/build_graph bin/shuf returned exit code 2 make[2]: Entering directory '/<>' Package libfastahack was not found in the pkg-config search path. Perhaps you should add the directory containing `libfastahack.pc' to the PKG_CONFIG_PATH environment variable Package 'libfastahack', required by 'virtual:world', not found Package cairo was not found in the pkg-config search path. Perhaps you should add the directory containing `cairo.pc' to the PKG_CONFIG_PATH environment variable Package 'cairo', required by 'virtual:world', not found Package 'libzstd', required by 'virtual:world', not found Package 'protobuf', required by 'virtual:world', not found Package 'jansson', required by 'virtual:world', not found Package libfastahack was not found in the pkg-config search path. Perhaps you should add the directory containing `libfastahack.pc' to the PKG_CONFIG_PATH environment variable Package 'libfastahack', required by 'virtual:world', not found Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable Package 'htslib', required by 'virtual:world', not found Package cairo was not found in the pkg-config search path. Perhaps you should add the directory containing `cairo.pc' to the PKG_CONFIG_PATH environment variable Package 'cairo', required by 'virtual:world', not found Package 'libzstd', required by 'virtual:world', not found Package protobuf was not found in the pkg-config search path. Perhaps you should add the directory containing `protobuf.pc' to the PKG_CONFIG_PATH environment variable Package 'protobuf', required by 'virtual:world', not found Package 'jansson', required by 'virtual:world', not found OS is Linux Compiler g++ is assumed to be GCC CXXFLAGS are -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp LDFLAGS are -Wl,-z,relro -Wl,-z,now Makefile:266: OpenMP header omp.h is not available! vg will not be able to build! rm -f -r bin/unittest rm -f -r lib rm -f -r obj/unittest/support rm -f -r obj/unittest rm -f -r obj/subcommand rm -f -r obj/pic/io rm -f -r obj/io rm -f -r obj/pic/algorithms rm -f -r obj/algorithms rm -f -r obj/config rm -f -r obj/pic rm -f -r obj rm -f -r share/ cd ./deps && cd sonLib && make clean make[3]: Entering directory '/<>/deps/sonLib' cd C && make clean make[4]: Entering directory '/<>/deps/sonLib/C' rm -rf ../bin ../lib make[4]: Leaving directory '/<>/deps/sonLib/C' cd externalTools && make clean make[4]: Entering directory '/<>/deps/sonLib/externalTools' cd cutest && make clean make[5]: Entering directory '/<>/deps/sonLib/externalTools/cutest' rm -f ../../lib/cuTest.a ../../lib/CuTest.h make[5]: Leaving directory '/<>/deps/sonLib/externalTools/cutest' cd quicktree_1.1 && make clean make[5]: Entering directory '/<>/deps/sonLib/externalTools/quicktree_1.1' rm -rf ./obj/*.o make[5]: Leaving directory '/<>/deps/sonLib/externalTools/quicktree_1.1' make[4]: Leaving directory '/<>/deps/sonLib/externalTools' rm -f ./bin/sonLib_daemonize.py make[3]: Leaving directory '/<>/deps/sonLib' cd ./deps && cd gcsa2 && make clean make[3]: Entering directory '/<>/deps/gcsa2' rm -rf bin lib obj rm -f *.o *.a build_gcsa convert_graph gcsa_format try_extend cd benchmark && make clean make[4]: Entering directory '/<>/deps/gcsa2/benchmark' rm -f count_kmers query_gcsa csa_builder csa_query *.o make[4]: Leaving directory '/<>/deps/gcsa2/benchmark' make[3]: Leaving directory '/<>/deps/gcsa2' cd ./deps && cd gbwt && make clean make[3]: Entering directory '/<>/deps/gbwt' rm -rf bin lib obj rm -f *.o *.a build_gbwt build_ri merge_gbwt benchmark metadata_tool remove_seq cd tests && make clean make[4]: Entering directory '/<>/deps/gbwt/tests' rm -f test_bwtmerge test_metadata test_queries test_support test_variants *.o make[4]: Leaving directory '/<>/deps/gbwt/tests' make[3]: Leaving directory '/<>/deps/gbwt' cd ./deps && cd gbwtgraph && make clean make[3]: Entering directory '/<>/deps/gbwtgraph' rm -rf bin lib obj rm -f *.o *.a gfa2gbwt cd tests && make clean make[4]: Entering directory '/<>/deps/gbwtgraph/tests' rm -f test_utils test_gbwtgraph test_cached_gbwtgraph test_gfa test_gbz test_minimizer test_index test_algorithms test_path_cover *.o make[4]: Leaving directory '/<>/deps/gbwtgraph/tests' make[3]: Leaving directory '/<>/deps/gbwtgraph' cd ./deps && cd kff-cpp-api && rm -Rf build cd ./deps && cd gssw && make clean make[3]: Entering directory '/<>/deps/gssw' rm -f -r lib/ rm -f -r bin/ rm -f -r obj/ make[3]: Leaving directory '/<>/deps/gssw' cd ./deps && cd ssw && cd src && make clean make[3]: Entering directory '/<>/deps/ssw/src' rm -f ssw.o ssw_cpp.o ssw_test libssw.so example_c example_cpp libsswjni.so ssw.jar ssw/Aligner.class ssw/Alignment.class ssw/Example.class *~ make[3]: Leaving directory '/<>/deps/ssw/src' cd ./deps && cd progress_bar && make clean make[3]: Entering directory '/<>/deps/progress_bar' make[3]: Leaving directory '/<>/deps/progress_bar' cd ./deps && cd sdsl-lite && ./uninstall.sh || true Library files will be removed from '/var/lib/sbuild/lib' and '/var/lib/sbuild/include' make[3]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 uninstall-sdsl make[4]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 CMakeFiles/uninstall-sdsl.dir/all make[5]: Entering directory '/<>/deps/sdsl-lite/build' make -f CMakeFiles/uninstall-sdsl.dir/build.make CMakeFiles/uninstall-sdsl.dir/depend make[6]: Entering directory '/<>/deps/sdsl-lite/build' cd /<>/deps/sdsl-lite/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/sdsl-lite /<>/deps/sdsl-lite /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build/CMakeFiles/uninstall-sdsl.dir/DependInfo.cmake "--color=" make[6]: Leaving directory '/<>/deps/sdsl-lite/build' make -f CMakeFiles/uninstall-sdsl.dir/build.make CMakeFiles/uninstall-sdsl.dir/build make[6]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -P /<>/deps/sdsl-lite/build/CMakeModules/cmake_uninstall.cmake -- Looking for "/<>/lib/pkgconfig/sdsl-lite.pc" - not found -- Looking for "/<>/include/sdsl/bit_vector_il.hpp" - found -- Looking for "/<>/include/sdsl/bit_vectors.hpp" - found -- Looking for "/<>/include/sdsl/bits.hpp" - found -- Looking for "/<>/include/sdsl/bp_support.hpp" - found -- Looking for "/<>/include/sdsl/bp_support_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/bp_support_g.hpp" - found -- Looking for "/<>/include/sdsl/bp_support_gg.hpp" - found -- Looking for "/<>/include/sdsl/bp_support_sada.hpp" - found -- Looking for "/<>/include/sdsl/coder.hpp" - found -- Looking for "/<>/include/sdsl/coder_comma.hpp" - found -- Looking for "/<>/include/sdsl/coder_elias_delta.hpp" - found -- Looking for "/<>/include/sdsl/coder_elias_gamma.hpp" - found -- Looking for "/<>/include/sdsl/coder_fibonacci.hpp" - found -- Looking for "/<>/include/sdsl/config.hpp" - found -- Looking for "/<>/include/sdsl/construct.hpp" - found -- Looking for "/<>/include/sdsl/construct_bwt.hpp" - found -- Looking for "/<>/include/sdsl/construct_config.hpp" - found -- Looking for "/<>/include/sdsl/construct_isa.hpp" - found -- Looking for "/<>/include/sdsl/construct_lcp.hpp" - found -- Looking for "/<>/include/sdsl/construct_lcp_helper.hpp" - found -- Looking for "/<>/include/sdsl/construct_sa.hpp" - found -- Looking for "/<>/include/sdsl/construct_sa_se.hpp" - found -- Looking for "/<>/include/sdsl/csa_alphabet_strategy.hpp" - found -- Looking for "/<>/include/sdsl/csa_bitcompressed.hpp" - found -- Looking for "/<>/include/sdsl/csa_sada.hpp" - found -- Looking for "/<>/include/sdsl/csa_sampling_strategy.hpp" - found -- Looking for "/<>/include/sdsl/csa_wt.hpp" - found -- Looking for "/<>/include/sdsl/cst_fully.hpp" - found -- Looking for "/<>/include/sdsl/cst_iterators.hpp" - found -- Looking for "/<>/include/sdsl/cst_sada.hpp" - found -- Looking for "/<>/include/sdsl/cst_sct3.hpp" - found -- Looking for "/<>/include/sdsl/dac_vector.hpp" - found -- Looking for "/<>/include/sdsl/enc_vector.hpp" - found -- Looking for "/<>/include/sdsl/fast_cache.hpp" - found -- Looking for "/<>/include/sdsl/hyb_vector.hpp" - found -- Looking for "/<>/include/sdsl/int_vector.hpp" - found -- Looking for "/<>/include/sdsl/int_vector_buffer.hpp" - found -- Looking for "/<>/include/sdsl/int_vector_io_wrappers.hpp" - found -- Looking for "/<>/include/sdsl/int_vector_mapper.hpp" - found -- Looking for "/<>/include/sdsl/inv_perm_support.hpp" - found -- Looking for "/<>/include/sdsl/io.hpp" - found -- Looking for "/<>/include/sdsl/iterators.hpp" - found -- Looking for "/<>/include/sdsl/k2_treap.hpp" - found -- Looking for "/<>/include/sdsl/k2_treap_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/k2_treap_helper.hpp" - found -- Looking for "/<>/include/sdsl/k2_tree.hpp" - found -- Looking for "/<>/include/sdsl/k2_tree_helper.hpp" - found -- Looking for "/<>/include/sdsl/lcp.hpp" - found -- Looking for "/<>/include/sdsl/lcp_bitcompressed.hpp" - found -- Looking for "/<>/include/sdsl/lcp_byte.hpp" - found -- Looking for "/<>/include/sdsl/lcp_dac.hpp" - found -- Looking for "/<>/include/sdsl/lcp_support_sada.hpp" - found -- Looking for "/<>/include/sdsl/lcp_support_tree.hpp" - found -- Looking for "/<>/include/sdsl/lcp_support_tree2.hpp" - found -- Looking for "/<>/include/sdsl/lcp_vlc.hpp" - found -- Looking for "/<>/include/sdsl/lcp_wt.hpp" - found -- Looking for "/<>/include/sdsl/louds_tree.hpp" - found -- Looking for "/<>/include/sdsl/memory_management.hpp" - found -- Looking for "/<>/include/sdsl/nearest_neighbour_dictionary.hpp" - found -- Looking for "/<>/include/sdsl/nn_dict_dynamic.hpp" - found -- Looking for "/<>/include/sdsl/qsufsort.hpp" - found -- Looking for "/<>/include/sdsl/ram_filebuf.hpp" - found -- Looking for "/<>/include/sdsl/ram_fs.hpp" - found -- Looking for "/<>/include/sdsl/rank_support.hpp" - found -- Looking for "/<>/include/sdsl/rank_support_scan.hpp" - found -- Looking for "/<>/include/sdsl/rank_support_v.hpp" - found -- Looking for "/<>/include/sdsl/rank_support_v5.hpp" - found -- Looking for "/<>/include/sdsl/raster_img.hpp" - found -- Looking for "/<>/include/sdsl/rle_vector.hpp" - found -- Looking for "/<>/include/sdsl/rmq_succinct_sada.hpp" - found -- Looking for "/<>/include/sdsl/rmq_succinct_sct.hpp" - found -- Looking for "/<>/include/sdsl/rmq_support.hpp" - found -- Looking for "/<>/include/sdsl/rmq_support_sparse_table.hpp" - found -- Looking for "/<>/include/sdsl/rrr_helper.hpp" - found -- Looking for "/<>/include/sdsl/rrr_vector.hpp" - found -- Looking for "/<>/include/sdsl/rrr_vector_15.hpp" - found -- Looking for "/<>/include/sdsl/sd_vector.hpp" - found -- Looking for "/<>/include/sdsl/sdsl_concepts.hpp" - found -- Looking for "/<>/include/sdsl/select_support.hpp" - found -- Looking for "/<>/include/sdsl/select_support_mcl.hpp" - found -- Looking for "/<>/include/sdsl/select_support_scan.hpp" - found -- Looking for "/<>/include/sdsl/sfstream.hpp" - found -- Looking for "/<>/include/sdsl/simple_sds.hpp" - found -- Looking for "/<>/include/sdsl/sorted_int_stack.hpp" - found -- Looking for "/<>/include/sdsl/sorted_multi_stack_support.hpp" - found -- Looking for "/<>/include/sdsl/sorted_stack_support.hpp" - found -- Looking for "/<>/include/sdsl/structure_tree.hpp" - found -- Looking for "/<>/include/sdsl/suffix_array_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/suffix_array_helper.hpp" - found -- Looking for "/<>/include/sdsl/suffix_arrays.hpp" - found -- Looking for "/<>/include/sdsl/suffix_tree_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/suffix_tree_helper.hpp" - found -- Looking for "/<>/include/sdsl/suffix_trees.hpp" - found -- Looking for "/<>/include/sdsl/uint128_t.hpp" - found -- Looking for "/<>/include/sdsl/uint256_t.hpp" - found -- Looking for "/<>/include/sdsl/uintx_t.hpp" - found -- Looking for "/<>/include/sdsl/util.hpp" - found -- Looking for "/<>/include/sdsl/vectors.hpp" - found -- Looking for "/<>/include/sdsl/vlc_vector.hpp" - found -- Looking for "/<>/include/sdsl/wavelet_trees.hpp" - found -- Looking for "/<>/include/sdsl/wm_int.hpp" - found -- Looking for "/<>/include/sdsl/wt_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/wt_ap.hpp" - found -- Looking for "/<>/include/sdsl/wt_blcd.hpp" - found -- Looking for "/<>/include/sdsl/wt_gmr.hpp" - found -- Looking for "/<>/include/sdsl/wt_helper.hpp" - found -- Looking for "/<>/include/sdsl/wt_huff.hpp" - found -- Looking for "/<>/include/sdsl/wt_hutu.hpp" - found -- Looking for "/<>/include/sdsl/wt_int.hpp" - found -- Looking for "/<>/include/sdsl/wt_pc.hpp" - found -- Looking for "/<>/include/sdsl/wt_rlmn.hpp" - found -- Looking for "/<>/lib/libsdsl.a" - not found -- Uninstalling "/<>/include/sdsl/bit_vector_il.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bit_vectors.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bits.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support_g.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support_gg.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder_comma.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder_elias_delta.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder_elias_gamma.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder_fibonacci.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/config.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_bwt.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_config.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_isa.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_lcp.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_lcp_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_sa.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_sa_se.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_alphabet_strategy.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_bitcompressed.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_sampling_strategy.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_wt.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/cst_fully.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/cst_iterators.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/cst_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/cst_sct3.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/dac_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/enc_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/fast_cache.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/hyb_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/int_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/int_vector_buffer.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/int_vector_io_wrappers.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/int_vector_mapper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/inv_perm_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/io.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/iterators.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_treap.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_treap_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_treap_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_tree.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_tree_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_bitcompressed.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_byte.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_dac.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_support_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_support_tree.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_support_tree2.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_vlc.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_wt.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/louds_tree.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/memory_management.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/nearest_neighbour_dictionary.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/nn_dict_dynamic.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/qsufsort.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/ram_filebuf.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/ram_fs.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rank_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rank_support_scan.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rank_support_v.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rank_support_v5.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/raster_img.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rle_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rmq_succinct_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rmq_succinct_sct.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rmq_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rmq_support_sparse_table.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rrr_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rrr_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rrr_vector_15.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sd_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sdsl_concepts.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/select_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/select_support_mcl.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/select_support_scan.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sfstream.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/simple_sds.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sorted_int_stack.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sorted_multi_stack_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sorted_stack_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/structure_tree.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_array_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_array_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_arrays.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_tree_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_tree_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_trees.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/uint128_t.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/uint256_t.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/uintx_t.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/util.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/vectors.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/vlc_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wavelet_trees.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wm_int.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_ap.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_blcd.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_gmr.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_huff.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_hutu.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_int.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_pc.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_rlmn.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. make[6]: Leaving directory '/<>/deps/sdsl-lite/build' Built target uninstall-sdsl make[5]: Leaving directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make[4]: Leaving directory '/<>/deps/sdsl-lite/build' make[3]: Leaving directory '/<>/deps/sdsl-lite/build' Installed sdsl files were removed. cd ./deps && cd sha1 && make clean make[3]: Entering directory '/<>/deps/sha1' rm -f demo_sha1 test_sha1 make[3]: Leaving directory '/<>/deps/sha1' cd ./deps && cd structures && make clean make[3]: Entering directory '/<>/deps/structures' if [ ! -d bin ]; then mkdir -p bin; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -d lib ]; then mkdir -p lib; fi find bin obj lib -type f -delete make[3]: Leaving directory '/<>/deps/structures' cd ./deps && cd sublinear-Li-Stephens && make clean make[3]: Entering directory '/<>/deps/sublinear-Li-Stephens' rm -f /<>/deps/sublinear-Li-Stephens/bin/* /<>/deps/sublinear-Li-Stephens/obj/*.o /<>/deps/sublinear-Li-Stephens/obj/test/*.o /<>/deps/sublinear-Li-Stephens/lib/* make[3]: Leaving directory '/<>/deps/sublinear-Li-Stephens' cd ./deps && cd libhandlegraph && rm -Rf build CMakeCache.txt CMakeFiles cd ./deps && cd libvgio && rm -Rf build CMakeCache.txt CMakeFiles # lru_cache is never built because it is header-only # bash-tap is never built either make[2]: Leaving directory '/<>' make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc SFX=-sse4.1 all test/build_graph bin/shuf make[2]: Entering directory '/<>' OS is Linux Compiler x86_64-linux-gnu-g++ is assumed to be GCC CXXFLAGS are -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp LDFLAGS are -Wl,-z,relro -Wl,-z,now . ./source_me.sh && cd deps/sdsl-lite && BUILD_PORTABLE=1 CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp" ./install.sh /<> Library will be installed in '/<>' WARNING: .git/hooks directory does not exists. The pre-commit hook is not installed. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Compiler is recent enough to support C++14. -- Performing Test HAVE_GCC_STD=C__14__WALL__WEXTRA__DNDEBUG -- Performing Test HAVE_GCC_STD=C__14__WALL__WEXTRA__DNDEBUG - Success -- Performing Test HAVE_GCC_O3__FFAST_MATH__FUNROLL_LOOPS -- Performing Test HAVE_GCC_O3__FFAST_MATH__FUNROLL_LOOPS - Success -- Performing Test HAVE_CXA_DEMANGLE -- Performing Test HAVE_CXA_DEMANGLE - Success -- Compiler supports DEMANGLE. -- Performing Test HAVE_GCC_DHAVE_CXA_DEMANGLE -- Performing Test HAVE_GCC_DHAVE_CXA_DEMANGLE - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) CMake Warning at CMakeLists.txt:102 (message): git not found. Cloning of submodules will not work. -- Looking for C++ include cstdio -- Looking for C++ include cstdio - found -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (4.5s) -- Generating done (0.6s) -- Build files have been written to: /<>/deps/sdsl-lite/build make[3]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 sdsl make[4]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 8 make -f CMakeFiles/Makefile2 lib/CMakeFiles/sdsl.dir/all make[5]: Entering directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/depend make[6]: Entering directory '/<>/deps/sdsl-lite/build' cd /<>/deps/sdsl-lite/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/sdsl-lite /<>/deps/sdsl-lite/lib /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build/lib /<>/deps/sdsl-lite/build/lib/CMakeFiles/sdsl.dir/DependInfo.cmake "--color=" make[6]: Leaving directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/build make[6]: Entering directory '/<>/deps/sdsl-lite/build' [ 0%] Building CXX object lib/CMakeFiles/sdsl.dir/bits.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/bits.cpp.o -MF CMakeFiles/sdsl.dir/bits.cpp.o.d -o CMakeFiles/sdsl.dir/bits.cpp.o -c /<>/deps/sdsl-lite/lib/bits.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o -MF CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o.d -o CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o -c /<>/deps/sdsl-lite/lib/bp_support_algorithm.cpp In file included from /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:24, from /<>/deps/sdsl-lite/build/lib/../include/sdsl/bp_support_algorithm.hpp:24, from /<>/deps/sdsl-lite/lib/bp_support_algorithm.cpp:1: In static member function ‘static void sdsl::bits::write_int(uint64_t*, uint64_t, uint8_t, uint8_t)’, inlined from ‘static void sdsl::memory_manager::resize(t_vec&, typename t_vec::size_type) [with t_vec = sdsl::int_vector<0>]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/memory_management.hpp:364:36, inlined from ‘void sdsl::int_vector< >::bit_resize(size_type) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:1358:27, inlined from ‘void sdsl::int_vector< >::resize(size_type) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:380:23, inlined from ‘sdsl::int_vector< >::int_vector(size_type, value_type, uint8_t) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:1285:11, inlined from ‘sdsl::excess::impl::impl()’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/bp_support_algorithm.hpp:114:46: /<>/deps/sdsl-lite/build/lib/../include/sdsl/bits.hpp:448:9: warning: ‘*temp’ may be used uninitialized [-Wmaybe-uninitialized] 448 | *word &= | ^~~~~ [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o -MF CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o.d -o CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o -c /<>/deps/sdsl-lite/lib/coder_elias_delta.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o -MF CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o.d -o CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o -c /<>/deps/sdsl-lite/lib/coder_elias_gamma.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o -MF CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o.d -o CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o -c /<>/deps/sdsl-lite/lib/coder_fibonacci.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/config.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/config.cpp.o -MF CMakeFiles/sdsl.dir/config.cpp.o.d -o CMakeFiles/sdsl.dir/config.cpp.o -c /<>/deps/sdsl-lite/lib/config.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_config.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_config.cpp.o -MF CMakeFiles/sdsl.dir/construct_config.cpp.o.d -o CMakeFiles/sdsl.dir/construct_config.cpp.o -c /<>/deps/sdsl-lite/lib/construct_config.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o -MF CMakeFiles/sdsl.dir/construct_isa.cpp.o.d -o CMakeFiles/sdsl.dir/construct_isa.cpp.o -c /<>/deps/sdsl-lite/lib/construct_isa.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o -MF CMakeFiles/sdsl.dir/construct_lcp.cpp.o.d -o CMakeFiles/sdsl.dir/construct_lcp.cpp.o -c /<>/deps/sdsl-lite/lib/construct_lcp.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o -MF CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o.d -o CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o -c /<>/deps/sdsl-lite/lib/construct_lcp_helper.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o -MF CMakeFiles/sdsl.dir/construct_sa.cpp.o.d -o CMakeFiles/sdsl.dir/construct_sa.cpp.o -c /<>/deps/sdsl-lite/lib/construct_sa.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o -MF CMakeFiles/sdsl.dir/construct_sa_se.cpp.o.d -o CMakeFiles/sdsl.dir/construct_sa_se.cpp.o -c /<>/deps/sdsl-lite/lib/construct_sa_se.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o -MF CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o.d -o CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o -c /<>/deps/sdsl-lite/lib/csa_alphabet_strategy.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/io.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/io.cpp.o -MF CMakeFiles/sdsl.dir/io.cpp.o.d -o CMakeFiles/sdsl.dir/io.cpp.o -c /<>/deps/sdsl-lite/lib/io.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o -MF CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o.d -o CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o -c /<>/deps/sdsl-lite/lib/lcp_support_tree.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o -MF CMakeFiles/sdsl.dir/louds_tree.cpp.o.d -o CMakeFiles/sdsl.dir/louds_tree.cpp.o -c /<>/deps/sdsl-lite/lib/louds_tree.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/memory_management.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/memory_management.cpp.o -MF CMakeFiles/sdsl.dir/memory_management.cpp.o.d -o CMakeFiles/sdsl.dir/memory_management.cpp.o -c /<>/deps/sdsl-lite/lib/memory_management.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o -MF CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o.d -o CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o -c /<>/deps/sdsl-lite/lib/nn_dict_dynamic.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_filebuf.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/ram_filebuf.cpp.o -MF CMakeFiles/sdsl.dir/ram_filebuf.cpp.o.d -o CMakeFiles/sdsl.dir/ram_filebuf.cpp.o -c /<>/deps/sdsl-lite/lib/ram_filebuf.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_fs.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/ram_fs.cpp.o -MF CMakeFiles/sdsl.dir/ram_fs.cpp.o.d -o CMakeFiles/sdsl.dir/ram_fs.cpp.o -c /<>/deps/sdsl-lite/lib/ram_fs.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o -MF CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o.d -o CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o -c /<>/deps/sdsl-lite/lib/rrr_vector_15.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/sd_vector.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/sd_vector.cpp.o -MF CMakeFiles/sdsl.dir/sd_vector.cpp.o.d -o CMakeFiles/sdsl.dir/sd_vector.cpp.o -c /<>/deps/sdsl-lite/lib/sd_vector.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/sfstream.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/sfstream.cpp.o -MF CMakeFiles/sdsl.dir/sfstream.cpp.o.d -o CMakeFiles/sdsl.dir/sfstream.cpp.o -c /<>/deps/sdsl-lite/lib/sfstream.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/simple_sds.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/simple_sds.cpp.o -MF CMakeFiles/sdsl.dir/simple_sds.cpp.o.d -o CMakeFiles/sdsl.dir/simple_sds.cpp.o -c /<>/deps/sdsl-lite/lib/simple_sds.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/structure_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/structure_tree.cpp.o -MF CMakeFiles/sdsl.dir/structure_tree.cpp.o.d -o CMakeFiles/sdsl.dir/structure_tree.cpp.o -c /<>/deps/sdsl-lite/lib/structure_tree.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/uint128_t.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/uint128_t.cpp.o -MF CMakeFiles/sdsl.dir/uint128_t.cpp.o.d -o CMakeFiles/sdsl.dir/uint128_t.cpp.o -c /<>/deps/sdsl-lite/lib/uint128_t.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/uint256_t.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/uint256_t.cpp.o -MF CMakeFiles/sdsl.dir/uint256_t.cpp.o.d -o CMakeFiles/sdsl.dir/uint256_t.cpp.o -c /<>/deps/sdsl-lite/lib/uint256_t.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/util.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/util.cpp.o -MF CMakeFiles/sdsl.dir/util.cpp.o.d -o CMakeFiles/sdsl.dir/util.cpp.o -c /<>/deps/sdsl-lite/lib/util.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/wt_helper.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/wt_helper.cpp.o -MF CMakeFiles/sdsl.dir/wt_helper.cpp.o.d -o CMakeFiles/sdsl.dir/wt_helper.cpp.o -c /<>/deps/sdsl-lite/lib/wt_helper.cpp [100%] Linking CXX static library libsdsl.a cd /<>/deps/sdsl-lite/build/lib && /usr/bin/cmake -P CMakeFiles/sdsl.dir/cmake_clean_target.cmake cd /<>/deps/sdsl-lite/build/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/sdsl.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libsdsl.a CMakeFiles/sdsl.dir/bits.cpp.o CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o CMakeFiles/sdsl.dir/config.cpp.o CMakeFiles/sdsl.dir/construct_config.cpp.o CMakeFiles/sdsl.dir/construct_isa.cpp.o CMakeFiles/sdsl.dir/construct_lcp.cpp.o CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o CMakeFiles/sdsl.dir/construct_sa.cpp.o CMakeFiles/sdsl.dir/construct_sa_se.cpp.o CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o CMakeFiles/sdsl.dir/io.cpp.o CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o CMakeFiles/sdsl.dir/louds_tree.cpp.o CMakeFiles/sdsl.dir/memory_management.cpp.o CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o CMakeFiles/sdsl.dir/ram_filebuf.cpp.o CMakeFiles/sdsl.dir/ram_fs.cpp.o CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o CMakeFiles/sdsl.dir/sd_vector.cpp.o CMakeFiles/sdsl.dir/sfstream.cpp.o CMakeFiles/sdsl.dir/simple_sds.cpp.o CMakeFiles/sdsl.dir/structure_tree.cpp.o CMakeFiles/sdsl.dir/uint128_t.cpp.o CMakeFiles/sdsl.dir/uint256_t.cpp.o CMakeFiles/sdsl.dir/util.cpp.o CMakeFiles/sdsl.dir/wt_helper.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libsdsl.a make[6]: Leaving directory '/<>/deps/sdsl-lite/build' [100%] Built target sdsl make[5]: Leaving directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make[4]: Leaving directory '/<>/deps/sdsl-lite/build' make[3]: Leaving directory '/<>/deps/sdsl-lite/build' Removing old files rm -rf '/<>/include/sdsl/*' rm -f '/<>/lib/libsdsl*' make[3]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles /<>/deps/sdsl-lite/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/depend make[5]: Entering directory '/<>/deps/sdsl-lite/build' cd /<>/deps/sdsl-lite/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/sdsl-lite /<>/deps/sdsl-lite/lib /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build/lib /<>/deps/sdsl-lite/build/lib/CMakeFiles/sdsl.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/build make[5]: Entering directory '/<>/deps/sdsl-lite/build' make[5]: Nothing to be done for 'lib/CMakeFiles/sdsl.dir/build'. make[5]: Leaving directory '/<>/deps/sdsl-lite/build' [100%] Built target sdsl make[4]: Leaving directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/sdsl-lite/build' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/sdsl-lite/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<>/lib/pkgconfig/sdsl-lite.pc -- Installing: /<>/include/sdsl/bit_vector_il.hpp -- Installing: /<>/include/sdsl/bit_vectors.hpp -- Installing: /<>/include/sdsl/bits.hpp -- Installing: /<>/include/sdsl/bp_support.hpp -- Installing: /<>/include/sdsl/bp_support_algorithm.hpp -- Installing: /<>/include/sdsl/bp_support_g.hpp -- Installing: /<>/include/sdsl/bp_support_gg.hpp -- Installing: /<>/include/sdsl/bp_support_sada.hpp -- Installing: /<>/include/sdsl/coder.hpp -- Installing: /<>/include/sdsl/coder_comma.hpp -- Installing: /<>/include/sdsl/coder_elias_delta.hpp -- Installing: /<>/include/sdsl/coder_elias_gamma.hpp -- Installing: /<>/include/sdsl/coder_fibonacci.hpp -- Installing: /<>/include/sdsl/config.hpp -- Installing: /<>/include/sdsl/construct.hpp -- Installing: /<>/include/sdsl/construct_bwt.hpp -- Installing: /<>/include/sdsl/construct_config.hpp -- Installing: /<>/include/sdsl/construct_isa.hpp -- Installing: /<>/include/sdsl/construct_lcp.hpp -- Installing: /<>/include/sdsl/construct_lcp_helper.hpp -- Installing: /<>/include/sdsl/construct_sa.hpp -- Installing: /<>/include/sdsl/construct_sa_se.hpp -- Installing: /<>/include/sdsl/csa_alphabet_strategy.hpp -- Installing: /<>/include/sdsl/csa_bitcompressed.hpp -- Installing: /<>/include/sdsl/csa_sada.hpp -- Installing: /<>/include/sdsl/csa_sampling_strategy.hpp -- Installing: /<>/include/sdsl/csa_wt.hpp -- Installing: /<>/include/sdsl/cst_fully.hpp -- Installing: /<>/include/sdsl/cst_iterators.hpp -- Installing: /<>/include/sdsl/cst_sada.hpp -- Installing: /<>/include/sdsl/cst_sct3.hpp -- Installing: /<>/include/sdsl/dac_vector.hpp -- Installing: /<>/include/sdsl/enc_vector.hpp -- Installing: /<>/include/sdsl/fast_cache.hpp -- Installing: /<>/include/sdsl/hyb_vector.hpp -- Installing: /<>/include/sdsl/int_vector.hpp -- Installing: /<>/include/sdsl/int_vector_buffer.hpp -- Installing: /<>/include/sdsl/int_vector_io_wrappers.hpp -- Installing: /<>/include/sdsl/int_vector_mapper.hpp -- Installing: /<>/include/sdsl/inv_perm_support.hpp -- Installing: /<>/include/sdsl/io.hpp -- Installing: /<>/include/sdsl/iterators.hpp -- Installing: /<>/include/sdsl/k2_treap.hpp -- Installing: /<>/include/sdsl/k2_treap_algorithm.hpp -- Installing: /<>/include/sdsl/k2_treap_helper.hpp -- Installing: /<>/include/sdsl/k2_tree.hpp -- Installing: /<>/include/sdsl/k2_tree_helper.hpp -- Installing: /<>/include/sdsl/lcp.hpp -- Installing: /<>/include/sdsl/lcp_bitcompressed.hpp -- Installing: /<>/include/sdsl/lcp_byte.hpp -- Installing: /<>/include/sdsl/lcp_dac.hpp -- Installing: /<>/include/sdsl/lcp_support_sada.hpp -- Installing: /<>/include/sdsl/lcp_support_tree.hpp -- Installing: /<>/include/sdsl/lcp_support_tree2.hpp -- Installing: /<>/include/sdsl/lcp_vlc.hpp -- Installing: /<>/include/sdsl/lcp_wt.hpp -- Installing: /<>/include/sdsl/louds_tree.hpp -- Installing: /<>/include/sdsl/memory_management.hpp -- Installing: /<>/include/sdsl/nearest_neighbour_dictionary.hpp -- Installing: /<>/include/sdsl/nn_dict_dynamic.hpp -- Installing: /<>/include/sdsl/qsufsort.hpp -- Installing: /<>/include/sdsl/ram_filebuf.hpp -- Installing: /<>/include/sdsl/ram_fs.hpp -- Installing: /<>/include/sdsl/rank_support.hpp -- Installing: /<>/include/sdsl/rank_support_scan.hpp -- Installing: /<>/include/sdsl/rank_support_v.hpp -- Installing: /<>/include/sdsl/rank_support_v5.hpp -- Installing: /<>/include/sdsl/raster_img.hpp -- Installing: /<>/include/sdsl/rle_vector.hpp -- Installing: /<>/include/sdsl/rmq_succinct_sada.hpp -- Installing: /<>/include/sdsl/rmq_succinct_sct.hpp -- Installing: /<>/include/sdsl/rmq_support.hpp -- Installing: /<>/include/sdsl/rmq_support_sparse_table.hpp -- Installing: /<>/include/sdsl/rrr_helper.hpp -- Installing: /<>/include/sdsl/rrr_vector.hpp -- Installing: /<>/include/sdsl/rrr_vector_15.hpp -- Installing: /<>/include/sdsl/sd_vector.hpp -- Installing: /<>/include/sdsl/sdsl_concepts.hpp -- Installing: /<>/include/sdsl/select_support.hpp -- Installing: /<>/include/sdsl/select_support_mcl.hpp -- Installing: /<>/include/sdsl/select_support_scan.hpp -- Installing: /<>/include/sdsl/sfstream.hpp -- Installing: /<>/include/sdsl/simple_sds.hpp -- Installing: /<>/include/sdsl/sorted_int_stack.hpp -- Installing: /<>/include/sdsl/sorted_multi_stack_support.hpp -- Installing: /<>/include/sdsl/sorted_stack_support.hpp -- Installing: /<>/include/sdsl/structure_tree.hpp -- Installing: /<>/include/sdsl/suffix_array_algorithm.hpp -- Installing: /<>/include/sdsl/suffix_array_helper.hpp -- Installing: /<>/include/sdsl/suffix_arrays.hpp -- Installing: /<>/include/sdsl/suffix_tree_algorithm.hpp -- Installing: /<>/include/sdsl/suffix_tree_helper.hpp -- Installing: /<>/include/sdsl/suffix_trees.hpp -- Installing: /<>/include/sdsl/uint128_t.hpp -- Installing: /<>/include/sdsl/uint256_t.hpp -- Installing: /<>/include/sdsl/uintx_t.hpp -- Installing: /<>/include/sdsl/util.hpp -- Installing: /<>/include/sdsl/vectors.hpp -- Installing: /<>/include/sdsl/vlc_vector.hpp -- Installing: /<>/include/sdsl/wavelet_trees.hpp -- Installing: /<>/include/sdsl/wm_int.hpp -- Installing: /<>/include/sdsl/wt_algorithm.hpp -- Installing: /<>/include/sdsl/wt_ap.hpp -- Installing: /<>/include/sdsl/wt_blcd.hpp -- Installing: /<>/include/sdsl/wt_gmr.hpp -- Installing: /<>/include/sdsl/wt_helper.hpp -- Installing: /<>/include/sdsl/wt_huff.hpp -- Installing: /<>/include/sdsl/wt_hutu.hpp -- Installing: /<>/include/sdsl/wt_int.hpp -- Installing: /<>/include/sdsl/wt_pc.hpp -- Installing: /<>/include/sdsl/wt_rlmn.hpp -- Installing: /<>/lib/libsdsl.a make[3]: Leaving directory '/<>/deps/sdsl-lite/build' SUCCESS: sdsl was installed successfully! The sdsl include files are located in '/<>/include'. The library files are located in '/<>/lib'. Sample programs can be found in the examples-directory. Tests in the test-directory A cheat sheet in the extras/cheatsheet-directory. Have fun! Makefile:511: warning: pattern recipe did not update peer target 'lib/libdivsufsort64.a'. Makefile:511: warning: pattern recipe did not update peer target 'lib/libdivsufsort.a'. . ./source_me.sh && cd deps/ssw/src && make && ar rs /<>/lib/libssw.a ssw.o ssw_cpp.o && cp ssw_cpp.h ssw.h /<>/include make[3]: Entering directory '/<>/deps/ssw/src' x86_64-linux-gnu-gcc -c -o ssw.o ssw.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wall -pipe -O3 -I. x86_64-linux-gnu-gcc -o ssw_test ssw.o main.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wall -pipe -O3 -I. -lm -lz x86_64-linux-gnu-gcc -o example_c ssw.o example.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wall -pipe -O3 -I. -lm -lz x86_64-linux-gnu-g++ -c -o ssw_cpp.o ssw_cpp.cpp -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wall -pipe -O3 -I. cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ x86_64-linux-gnu-g++ -o example_cpp example.cpp ssw.o ssw_cpp.o -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wall -pipe -O3 -I. -lm -lz cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ x86_64-linux-gnu-gcc -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wall -pipe -O3 -I. -fPIC -shared -o libssw.so ssw.c make[3]: Leaving directory '/<>/deps/ssw/src' ar: creating /<>/lib/libssw.a . ./source_me.sh && cp -r deps/gcsa2/include/gcsa /<>/include/ && cd deps/gcsa2 && make directories && make lib/libgcsa2.a && mv lib/libgcsa2.a /<>/lib make[3]: Entering directory '/<>/deps/gcsa2' mkdir -p bin mkdir -p lib mkdir -p obj make[3]: Leaving directory '/<>/deps/gcsa2' make[3]: Entering directory '/<>/deps/gcsa2' /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/dbg.o src/dbg.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/files.o src/files.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gcsa.o src/gcsa.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/lcp.o src/lcp.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/path_graph.o src/path_graph.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/support.o src/support.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp ar rcs lib/libgcsa2.a obj/algorithms.o obj/dbg.o obj/files.o obj/gcsa.o obj/internal.o obj/lcp.o obj/path_graph.o obj/support.o obj/utils.o make[3]: Leaving directory '/<>/deps/gcsa2' . ./source_me.sh && cp -r deps/gbwt/include/gbwt /<>/include/ && cd deps/gbwt && make clean && make && mv lib/libgbwt.a /<>/lib make[3]: Entering directory '/<>/deps/gbwt' rm -rf bin lib obj rm -f *.o *.a build_gbwt build_ri merge_gbwt benchmark metadata_tool remove_seq cd tests && make clean make[4]: Entering directory '/<>/deps/gbwt/tests' rm -f test_bwtmerge test_metadata test_queries test_support test_variants *.o make[4]: Leaving directory '/<>/deps/gbwt/tests' make[3]: Leaving directory '/<>/deps/gbwt' make[3]: Entering directory '/<>/deps/gbwt' mkdir -p bin mkdir -p lib mkdir -p obj /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/bwtmerge.o src/bwtmerge.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/cached_gbwt.o src/cached_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/dynamic_gbwt.o src/dynamic_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/fast_locate.o src/fast_locate.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/files.o src/files.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbwt.o src/gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/metadata.o src/metadata.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/support.o src/support.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/test.o src/test.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/variants.o src/variants.cpp ar rcs lib/libgbwt.a obj/algorithms.o obj/bwtmerge.o obj/cached_gbwt.o obj/dynamic_gbwt.o obj/fast_locate.o obj/files.o obj/gbwt.o obj/internal.o obj/metadata.o obj/support.o obj/test.o obj/utils.o obj/variants.o /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/build_gbwt.o src/build_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/build_gbwt obj/build_gbwt.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/build_ri.o src/build_ri.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/build_ri obj/build_ri.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/merge_gbwt.o src/merge_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/merge_gbwt obj/merge_gbwt.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/benchmark.o src/benchmark.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/benchmark obj/benchmark.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/metadata_tool.o src/metadata_tool.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/metadata_tool obj/metadata_tool.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/remove_seq.o src/remove_seq.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/remove_seq obj/remove_seq.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 rm obj/build_ri.o obj/metadata_tool.o obj/benchmark.o obj/merge_gbwt.o obj/remove_seq.o obj/build_gbwt.o make[3]: Leaving directory '/<>/deps/gbwt' . ./source_me.sh && cd deps/libhandlegraph && rm -Rf build CMakeCache.txt CMakeFiles && mkdir build && cd build && CXXFLAGS="-std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2" cmake -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_PREFIX=/<> -DCMAKE_INSTALL_LIBDIR=lib .. && make && make install -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done libhandlegraph is root project or external_project -- Configuring done (1.5s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/libhandlegraph/build make[3]: Entering directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -S/<>/deps/libhandlegraph -B/<>/deps/libhandlegraph/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles /<>/deps/libhandlegraph/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_objs.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [ 2%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/deletable_handle_graph.cpp [ 5%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o -c /<>/deps/libhandlegraph/src/dfs.cpp [ 8%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/handle_graph.cpp [ 11%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/mutable_handle_graph.cpp [ 14%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o -c /<>/deps/libhandlegraph/src/path_metadata.cpp [ 17%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o -c /<>/deps/libhandlegraph/src/mutable_path_metadata.cpp [ 20%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/path_handle_graph.cpp [ 22%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/path_position_handle_graph.cpp [ 25%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/mutable_path_handle_graph.cpp [ 28%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/ranked_handle_graph.cpp [ 31%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o -c /<>/deps/libhandlegraph/src/serializable.cpp [ 34%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o -c /<>/deps/libhandlegraph/src/snarl_decomposition.cpp [ 37%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o -c /<>/deps/libhandlegraph/src/trivially_serializable.cpp [ 40%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/types.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/types.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/types.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o -c /<>/deps/libhandlegraph/src/types.cpp [ 42%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o -c /<>/deps/libhandlegraph/src/copy_graph.cpp [ 45%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o -c /<>/deps/libhandlegraph/src/append_graph.cpp [ 48%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o -c /<>/deps/libhandlegraph/src/are_equivalent.cpp [ 51%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o -c /<>/deps/libhandlegraph/src/find_tips.cpp [ 54%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o -c /<>/deps/libhandlegraph/src/topological_sort.cpp [ 57%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o -c /<>/deps/libhandlegraph/src/apply_orientations.cpp [ 60%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o -c /<>/deps/libhandlegraph/src/is_single_stranded.cpp [ 62%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o -c /<>/deps/libhandlegraph/src/count_walks.cpp [ 65%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o -c /<>/deps/libhandlegraph/src/eades_algorithm.cpp [ 68%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o -c /<>/deps/libhandlegraph/src/dagify.cpp In file included from /usr/x86_64-linux-gnu/include/c++/14/x86_64-linux-gnu/bits/c++allocator.h:33, from /usr/x86_64-linux-gnu/include/c++/14/bits/allocator.h:46, from /usr/x86_64-linux-gnu/include/c++/14/vector:63, from /<>/deps/libhandlegraph/src/dagify.cpp:8: In member function ‘void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = long int]’, inlined from ‘static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = long int]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/alloc_traits.h:550:23, inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:389:19, inlined from ‘std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:368:15, inlined from ‘std::vector<_Tp, _Alloc>::~vector() [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:738:7, inlined from ‘std::unordered_map handlegraph::algorithms::dagify(const handlegraph::HandleGraph*, handlegraph::MutableHandleGraph*, size_t)’ at /<>/deps/libhandlegraph/src/dagify.cpp:445:5: /usr/x86_64-linux-gnu/include/c++/14/bits/new_allocator.h:172:33: warning: ‘void operator delete(void*, std::size_t)’ called on pointer ‘’ with nonzero offset [1, 9223372036854775800] [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In member function ‘_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long int]’, inlined from ‘static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long int]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/alloc_traits.h:515:28, inlined from ‘std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:380:33, inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:398:44, inlined from ‘std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:334:26, inlined from ‘std::vector<_Tp, _Alloc>::vector(size_type, const value_type&, const allocator_type&) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:571:47, inlined from ‘std::unordered_map handlegraph::algorithms::dagify(const handlegraph::HandleGraph*, handlegraph::MutableHandleGraph*, size_t)’ at /<>/deps/libhandlegraph/src/dagify.cpp:327:85: /usr/x86_64-linux-gnu/include/c++/14/bits/new_allocator.h:151:55: note: returned from ‘void* operator new(std::size_t)’ 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ [ 71%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o -c /<>/deps/libhandlegraph/src/strongly_connected_components.cpp [ 74%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o -c /<>/deps/libhandlegraph/src/find_shortest_paths.cpp [ 77%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o -c /<>/deps/libhandlegraph/src/dijkstra.cpp [ 80%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o -c /<>/deps/libhandlegraph/src/is_acyclic.cpp [ 82%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o -c /<>/deps/libhandlegraph/src/reverse_complement.cpp [ 85%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o -c /<>/deps/libhandlegraph/src/split_strands.cpp [ 88%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o -c /<>/deps/libhandlegraph/src/chop.cpp [ 91%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o -c /<>/deps/libhandlegraph/src/weakly_connected_components.cpp [ 94%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o -c /<>/deps/libhandlegraph/src/extend.cpp make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 94%] Built target handlegraph_objs make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_shared.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [ 97%] Linking CXX shared library libhandlegraph.so /usr/bin/cmake -E cmake_link_script CMakeFiles/handlegraph_shared.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wl,--dependency-file=CMakeFiles/handlegraph_shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libhandlegraph.so -o libhandlegraph.so CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 97%] Built target handlegraph_shared make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [100%] Linking CXX static library libhandlegraph.a /usr/bin/cmake -P CMakeFiles/handlegraph_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/handlegraph_static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhandlegraph.a CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhandlegraph.a make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [100%] Built target handlegraph_static make[4]: Leaving directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles 0 make[3]: Leaving directory '/<>/deps/libhandlegraph/build' make[3]: Entering directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -S/<>/deps/libhandlegraph -B/<>/deps/libhandlegraph/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles /<>/deps/libhandlegraph/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_objs.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_objs.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 94%] Built target handlegraph_objs make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_shared.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_shared.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 97%] Built target handlegraph_shared make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_static.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [100%] Built target handlegraph_static make[4]: Leaving directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/libhandlegraph/build' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/libhandlegraph/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /<>/lib/libhandlegraph.so -- Installing: /<>/lib/libhandlegraph.a -- Up-to-date: /<>/include/handlegraph -- Up-to-date: /<>/include/handlegraph/serializable.hpp -- Up-to-date: /<>/include/handlegraph/util.hpp -- Up-to-date: /<>/include/handlegraph/types.hpp -- Up-to-date: /<>/include/handlegraph/trivially_serializable.hpp -- Up-to-date: /<>/include/handlegraph/snarl_decomposition.hpp -- Up-to-date: /<>/include/handlegraph/serializable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/path_position_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/path_metadata.hpp -- Up-to-date: /<>/include/handlegraph/path_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/named_node_back_translation.hpp -- Up-to-date: /<>/include/handlegraph/mutable_path_mutable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/mutable_path_metadata.hpp -- Up-to-date: /<>/include/handlegraph/mutable_path_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/mutable_path_deletable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/mutable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/iteratee.hpp -- Up-to-date: /<>/include/handlegraph/handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/expanding_overlay_graph.hpp -- Up-to-date: /<>/include/handlegraph/deletable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/buildable_snarl_decomposition.hpp -- Up-to-date: /<>/include/handlegraph/algorithms -- Up-to-date: /<>/include/handlegraph/algorithms/weakly_connected_components.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/topological_sort.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/strongly_connected_components.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/split_strands.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/reverse_complement.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/is_single_stranded.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/is_acyclic.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/internal -- Up-to-date: /<>/include/handlegraph/algorithms/internal/dfs.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/find_tips.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/find_shortest_paths.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/extend.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/eades_algorithm.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/dijkstra.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/dagify.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/count_walks.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/copy_graph.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/chop.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/are_equivalent.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/apply_orientations.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/append_graph.hpp -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphTargets.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphTargets-noconfig.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphConfig.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphConfigVersion.cmake make[3]: Leaving directory '/<>/deps/libhandlegraph/build' . ./source_me.sh && cp -r deps/gbwtgraph/include/gbwtgraph /<>/include/ && cd deps/gbwtgraph && make clean && make && mv lib/libgbwtgraph.a /<>/lib make[3]: Entering directory '/<>/deps/gbwtgraph' rm -rf bin lib obj rm -f *.o *.a gfa2gbwt cd tests && make clean make[4]: Entering directory '/<>/deps/gbwtgraph/tests' rm -f test_utils test_gbwtgraph test_cached_gbwtgraph test_gfa test_gbz test_minimizer test_index test_algorithms test_path_cover *.o make[4]: Leaving directory '/<>/deps/gbwtgraph/tests' make[3]: Leaving directory '/<>/deps/gbwtgraph' make[3]: Entering directory '/<>/deps/gbwtgraph' mkdir -p bin mkdir -p lib mkdir -p obj /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/cached_gbwtgraph.o src/cached_gbwtgraph.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbwtgraph.o src/gbwtgraph.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbz.o src/gbz.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gfa.o src/gfa.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/minimizer.o src/minimizer.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/path_cover.o src/path_cover.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp ar rcs lib/libgbwtgraph.a obj/algorithms.o obj/cached_gbwtgraph.o obj/gbwtgraph.o obj/gbz.o obj/gfa.o obj/internal.o obj/minimizer.o obj/path_cover.o obj/utils.o /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gfa2gbwt.o src/gfa2gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/gfa2gbwt obj/gfa2gbwt.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbz_stats.o src/gbz_stats.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/gbz_stats obj/gbz_stats.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/kmer_freq.o src/kmer_freq.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/kmer_freq obj/kmer_freq.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 rm obj/kmer_freq.o obj/gbz_stats.o obj/gfa2gbwt.o make[3]: Leaving directory '/<>/deps/gbwtgraph' . ./source_me.sh && cd deps/kff-cpp-api && rm -Rf build && mkdir build && cd build && cmake .. && make && cp kff_io.hpp /<>/include && mv libkff.a /<>/lib -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.5s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/kff-cpp-api/build make[3]: Entering directory '/<>/deps/kff-cpp-api/build' [ 16%] Building CXX object CMakeFiles/kff.dir/kff_io.cpp.o [ 33%] Linking CXX static library libkff.a [ 33%] Built target kff [ 50%] Building CXX object CMakeFiles/kff_example.dir/main.cpp.o [ 66%] Linking CXX executable kff_example [ 66%] Built target kff_example [ 83%] Building CXX object benchmarks/CMakeFiles/reader_bench.dir/reader.cpp.o [100%] Linking CXX executable reader_bench [100%] Built target reader_bench make[3]: Leaving directory '/<>/deps/kff-cpp-api/build' . ./source_me.sh && cd deps/gssw && make && cp lib/libgssw.a /<>/lib/ && cp src/gssw.h /<>/include/ make[3]: Entering directory '/<>/deps/gssw' x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wall -O3 -g -c -o obj/gssw.o src/gssw.c src/gssw.c: In function ‘gssw_graph_print’: src/gssw.c:1947:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1947 | fprintf(stdout, "GRAPH // node %llu %u %s\n", n->id, n->len, n->seq); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c:1951:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1951 | fprintf(stdout, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c:1951:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1951 | fprintf(stdout, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c: In function ‘gssw_graph_print_stderr’: src/gssw.c:1963:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1963 | fprintf(stderr, "GRAPH // node %llu %u %s\n", n->id, n->len, n->seq); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c:1967:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1967 | fprintf(stderr, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c:1967:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1967 | fprintf(stderr, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c: In function ‘gssw_graph_print_score_matrices’: src/gssw.c:1978:31: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1978 | fprintf(out, "node %llu\n", n->id); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_print_graph_cigar’: src/gssw.c:3623:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 3623 | fprintf(out, "%llu[", nc->node->id); | ~~~^ ~~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_create_seed_byte’: src/gssw.c:5095:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 5095 | fprintf(stderr, "failing is node %llu\n", prev[k]->id); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_create_seed_word’: src/gssw.c:5130:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 5130 | fprintf(stderr, "failing is node %llu\n", prev[k]->id); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_sw_software_byte’: src/gssw.c:277:5: warning: ‘__builtin_memcpy’ writing between 18446744071562067984 and 18446744073709551600 bytes into a region of size 9223372036854775807 [-Wstringop-overflow=] 277 | memcpy(scratch, to_unswizzle, size); | ^ In function ‘unswizzle_byte’, inlined from ‘gssw_sw_software_byte’ at src/gssw.c:405:9: src/gssw.c:271:35: note: destination object of size 9223372036854775807 allocated by ‘malloc’ 271 | uint8_t* scratch = (uint8_t*) malloc(size * sizeof(uint8_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/gssw.c: In function ‘gssw_sw_software_word’: src/gssw.c:1117:5: warning: ‘__builtin_memcpy’ writing between 18446744069414584336 and 18446744073709551600 bytes into a region of size 9223372036854775807 [-Wstringop-overflow=] 1117 | memcpy(scratch, to_unswizzle, size * sizeof(int16_t)); | ^ In function ‘unswizzle_word’, inlined from ‘gssw_sw_software_word’ at src/gssw.c:1249:9: src/gssw.c:1111:35: note: destination object of size 9223372036854775807 allocated by ‘malloc’ 1111 | int16_t* scratch = (int16_t*) malloc(size * sizeof(int16_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/gssw.c: In function ‘gssw_node_create’: src/gssw.c:4975:5: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 4975 | strncpy(n->seq, seq, len); n->seq[len] = 0; | ^ src/gssw.c:4971:19: note: length computed here 4971 | int32_t len = strlen(seq); | ^~~~~~~~~~~ # Make dest directory x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wall -O3 -g src/example.c -o bin/gssw_example obj/gssw.o -lm -lz x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wall -O3 -g src/example_adj.c -o bin/gssw_example_adj obj/gssw.o -lm -lz x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wall -O3 -g src/gssw_test.c -o bin/gssw_test obj/gssw.o -lm -lz ar rvs lib/libgssw.a obj/gssw.o ar: creating lib/libgssw.a a - obj/gssw.o make[3]: Leaving directory '/<>/deps/gssw' . ./source_me.sh && cd ./deps/sonLib && kyotoTycoonLib="" make && cp lib/sonLib.a /<>/lib/libsonlib.a && mkdir -p /<>/include/sonLib && cp lib/*.h /<>/include/sonLib make[3]: Entering directory '/<>/deps/sonLib' cd externalTools && make all make[4]: Entering directory '/<>/deps/sonLib/externalTools' cd cutest && make all make[5]: Entering directory '/<>/deps/sonLib/externalTools/cutest' x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -c CuTest.c ar rc cuTest.a *.o ranlib cuTest.a rm -f *.o mv cuTest.a ../../lib/ cp CuTest.h ../../lib/ make[5]: Leaving directory '/<>/deps/sonLib/externalTools/cutest' cd quicktree_1.1 && make all CC="x86_64-linux-gnu-gcc -std=c99" make[5]: Entering directory '/<>/deps/sonLib/externalTools/quicktree_1.1' x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/align.o ./src/align.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/cluster.o ./src/cluster.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/distancemat.o ./src/distancemat.c ./src/distancemat.c: In function ‘read_phylip_DistanceMatrix’: ./src/distancemat.c:390:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 390 | fscanf( handle, "%s", identifier ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/distancemat.c:397:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 397 | fscanf( handle, "%lf", &dist); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/options.o ./src/options.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/util.o ./src/util.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/sequence.o ./src/sequence.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/quicktree.o ./src/quicktree.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/buildtree.o ./src/buildtree.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/tree.o ./src/tree.c ./src/tree.c: In function ‘read_newhampshire_Tnode’: ./src/tree.c:393:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 393 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:406:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 406 | fscanf( handle, "%1s", &c); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:417:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 417 | fscanf( handle, "%1s", &c); /* should be ) */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:420:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 420 | fscanf( handle, "%1s", &c); /* should be : */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c: In function ‘read_newhampshire_Tree’: ./src/tree.c:468:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 468 | fscanf( handle, "("); | ^~~~~~~~~~~~~~~~~~~~ ./src/tree.c:475:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 475 | fscanf( handle, "%1s", &c ); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:484:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 484 | fscanf( handle, "%1s", &c ); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:493:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 493 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:496:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 496 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -g -o bin/quicktree ./obj/align.o ./obj/cluster.o ./obj/distancemat.o ./obj/options.o ./obj/util.o ./obj/sequence.o ./obj/quicktree.o ./obj/buildtree.o ./obj/tree.o -lm make[5]: Leaving directory '/<>/deps/sonLib/externalTools/quicktree_1.1' make[4]: Leaving directory '/<>/deps/sonLib/externalTools' cd C && make all make[4]: Entering directory '/<>/deps/sonLib/C' cp inc/avl.h ../lib/avl.h.tmp mv ../lib/avl.h.tmp ../lib/avl.h cp inc/bioioC.h ../lib/bioioC.h.tmp mv ../lib/bioioC.h.tmp ../lib/bioioC.h cp inc/commonC.h ../lib/commonC.h.tmp mv ../lib/commonC.h.tmp ../lib/commonC.h cp inc/fastCMaths.h ../lib/fastCMaths.h.tmp mv ../lib/fastCMaths.h.tmp ../lib/fastCMaths.h cp inc/hashTableC.h ../lib/hashTableC.h.tmp mv ../lib/hashTableC.h.tmp ../lib/hashTableC.h cp inc/hashTableC_itr.h ../lib/hashTableC_itr.h.tmp mv ../lib/hashTableC_itr.h.tmp ../lib/hashTableC_itr.h cp inc/hashTablePrivateC.h ../lib/hashTablePrivateC.h.tmp mv ../lib/hashTablePrivateC.h.tmp ../lib/hashTablePrivateC.h cp inc/jsmn.h ../lib/jsmn.h.tmp mv ../lib/jsmn.h.tmp ../lib/jsmn.h cp inc/pairwiseAlignment.h ../lib/pairwiseAlignment.h.tmp mv ../lib/pairwiseAlignment.h.tmp ../lib/pairwiseAlignment.h cp inc/sonLib.h ../lib/sonLib.h.tmp mv ../lib/sonLib.h.tmp ../lib/sonLib.h cp inc/sonLibAlign.h ../lib/sonLibAlign.h.tmp mv ../lib/sonLibAlign.h.tmp ../lib/sonLibAlign.h cp inc/sonLibCache.h ../lib/sonLibCache.h.tmp mv ../lib/sonLibCache.h.tmp ../lib/sonLibCache.h cp inc/sonLibCommon.h ../lib/sonLibCommon.h.tmp mv ../lib/sonLibCommon.h.tmp ../lib/sonLibCommon.h cp inc/sonLibCompression.h ../lib/sonLibCompression.h.tmp mv ../lib/sonLibCompression.h.tmp ../lib/sonLibCompression.h cp inc/sonLibConnectivity.h ../lib/sonLibConnectivity.h.tmp mv ../lib/sonLibConnectivity.h.tmp ../lib/sonLibConnectivity.h cp inc/sonLibEulerTour.h ../lib/sonLibEulerTour.h.tmp mv ../lib/sonLibEulerTour.h.tmp ../lib/sonLibEulerTour.h cp inc/sonLibExcept.h ../lib/sonLibExcept.h.tmp mv ../lib/sonLibExcept.h.tmp ../lib/sonLibExcept.h cp inc/sonLibFile.h ../lib/sonLibFile.h.tmp mv ../lib/sonLibFile.h.tmp ../lib/sonLibFile.h cp inc/sonLibHash.h ../lib/sonLibHash.h.tmp mv ../lib/sonLibHash.h.tmp ../lib/sonLibHash.h cp inc/sonLibKVDatabase.h ../lib/sonLibKVDatabase.h.tmp mv ../lib/sonLibKVDatabase.h.tmp ../lib/sonLibKVDatabase.h cp inc/sonLibKVDatabaseConf.h ../lib/sonLibKVDatabaseConf.h.tmp mv ../lib/sonLibKVDatabaseConf.h.tmp ../lib/sonLibKVDatabaseConf.h cp inc/sonLibList.h ../lib/sonLibList.h.tmp mv ../lib/sonLibList.h.tmp ../lib/sonLibList.h cp inc/sonLibMath.h ../lib/sonLibMath.h.tmp mv ../lib/sonLibMath.h.tmp ../lib/sonLibMath.h cp inc/sonLibNaiveConnectivity.h ../lib/sonLibNaiveConnectivity.h.tmp mv ../lib/sonLibNaiveConnectivity.h.tmp ../lib/sonLibNaiveConnectivity.h cp inc/sonLibRandom.h ../lib/sonLibRandom.h.tmp mv ../lib/sonLibRandom.h.tmp ../lib/sonLibRandom.h cp inc/sonLibSet.h ../lib/sonLibSet.h.tmp mv ../lib/sonLibSet.h.tmp ../lib/sonLibSet.h cp inc/sonLibSortedSet.h ../lib/sonLibSortedSet.h.tmp mv ../lib/sonLibSortedSet.h.tmp ../lib/sonLibSortedSet.h cp inc/sonLibString.h ../lib/sonLibString.h.tmp mv ../lib/sonLibString.h.tmp ../lib/sonLibString.h cp inc/sonLibTreap.h ../lib/sonLibTreap.h.tmp mv ../lib/sonLibTreap.h.tmp ../lib/sonLibTreap.h cp inc/sonLibTree.h ../lib/sonLibTree.h.tmp mv ../lib/sonLibTree.h.tmp ../lib/sonLibTree.h cp inc/sonLibTuples.h ../lib/sonLibTuples.h.tmp mv ../lib/sonLibTuples.h.tmp ../lib/sonLibTuples.h cp inc/sonLibTypes.h ../lib/sonLibTypes.h.tmp mv ../lib/sonLibTypes.h.tmp ../lib/sonLibTypes.h cp inc/stGraph.h ../lib/stGraph.h.tmp mv ../lib/stGraph.h.tmp ../lib/stGraph.h cp inc/stJson.h ../lib/stJson.h.tmp mv ../lib/stJson.h.tmp ../lib/stJson.h cp inc/stMatrix.h ../lib/stMatrix.h.tmp mv ../lib/stMatrix.h.tmp ../lib/stMatrix.h cp inc/stPhylogeny.h ../lib/stPhylogeny.h.tmp mv ../lib/stPhylogeny.h.tmp ../lib/stPhylogeny.h cp inc/stPosetAlignment.h ../lib/stPosetAlignment.h.tmp mv ../lib/stPosetAlignment.h.tmp ../lib/stPosetAlignment.h cp inc/stSafeC.h ../lib/stSafeC.h.tmp mv ../lib/stSafeC.h.tmp ../lib/stSafeC.h cp inc/stSpimapLayer.h ../lib/stSpimapLayer.h.tmp mv ../lib/stSpimapLayer.h.tmp ../lib/stSpimapLayer.h cp inc/stThreadPool.h ../lib/stThreadPool.h.tmp mv ../lib/stThreadPool.h.tmp ../lib/stThreadPool.h cp inc/stUnionFind.h ../lib/stUnionFind.h.tmp mv ../lib/stUnionFind.h.tmp ../lib/stUnionFind.h x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -I inc -I ../lib/ -c impl/*.c cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/bioioC.c: In function ‘parseInt’: impl/bioioC.c:265:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 265 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:265:15: note: did you mean to dereference the pointer? 265 | while(*string != '\0' && !isspace(**string)) { | ^ impl/bioioC.c: In function ‘parseFloat’: impl/bioioC.c:286:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 286 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:286:15: note: did you mean to dereference the pointer? 286 | while(*string != '\0' && !isspace(**string)) { | ^ impl/bioioC.c: In function ‘parseString’: impl/bioioC.c:307:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 307 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:307:15: note: did you mean to dereference the pointer? 307 | while(*string != '\0' && !isspace(**string)) { | ^ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibCompression.c: In function ‘stCompression_compress’: impl/sonLibCompression.c:37:9: warning: ‘LZ4_compress’ is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] 37 | int64_t bytesWritten = LZ4_compress(((char*)data) + inputOffset, buffer+(outputOffset+1), subChunk ? ST_LZ4_CHUNK_SIZE : sizeInBytes - inputOffset); | ^~~~~~~ In file included from /usr/include/lz4hc.h:43, from impl/sonLibCompression.c:15: /usr/include/lz4.h:806:75: note: declared here 806 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize); | ^~~~~~~~~~~~ impl/sonLibCompression.c: In function ‘stCompression_decompress’: impl/sonLibCompression.c:60:13: warning: ‘LZ4_uncompress’ is deprecated: use LZ4_decompress_fast() instead [-Wdeprecated-declarations] 60 | int64_t bytesRead = LZ4_uncompress(((char *)compressedData)+inputOffset, | ^~~~~~~ /usr/include/lz4.h:814:68: note: declared here 814 | LZ4_DEPRECATED("use LZ4_decompress_fast() instead") LZ4LIB_API int LZ4_uncompress (const char* source, char* dest, int outputSize); | ^~~~~~~~~~~~~~ impl/sonLibCompression.c:72:17: warning: ‘LZ4_uncompress_unknownOutputSize’ is deprecated: use LZ4_decompress_safe() instead [-Wdeprecated-declarations] 72 | int64_t bytesWritten = LZ4_uncompress_unknownOutputSize(((char *)compressedData)+inputOffset, | ^~~~~~~ /usr/include/lz4.h:815:68: note: declared here 815 | LZ4_DEPRECATED("use LZ4_decompress_safe() instead") LZ4LIB_API int LZ4_uncompress_unknownOutputSize (const char* source, char* dest, int isize, int maxOutputSize); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibConnectivity.c: In function ‘stConnectivity_addEdge’: impl/sonLibConnectivity.c:248:33: warning: pointer ‘component1’ may be used after ‘free’ [-Wuse-after-free] 248 | connectivity->mergeCallback(connectivity->mergeExtraData, component1, component2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘stConnectedComponent_destruct’, inlined from ‘stConnectivity_addEdge’ at impl/sonLibConnectivity.c:238:3: impl/sonLibConnectivity.c:608:9: note: call to ‘free’ here 608 | free(comp); | ^~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibTreap.c: In function ‘stTreap_remove’: impl/sonLibTreap.c:331:18: warning: pointer ‘rmnode’ used after ‘free’ [-Wuse-after-free] 331 | stTreap *p = rmnode->parent; | ^ impl/sonLibTreap.c:329:9: note: call to ‘free’ here 329 | free(rmnode); | ^~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C x86_64-linux-gnu-g++ -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall -funroll-loops -DNDEBUG -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wl,-z,relro -Wl,-z,now -I inc -I ../lib/ -c impl/*.cpp ar rc sonLib.a *.o ../externalTools/quicktree_1.1/obj/buildtree.o ../externalTools/quicktree_1.1/obj/cluster.o ../externalTools/quicktree_1.1/obj/distancemat.o ../externalTools/quicktree_1.1/obj/options.o ../externalTools/quicktree_1.1/obj/sequence.o ../externalTools/quicktree_1.1/obj/tree.o ../externalTools/quicktree_1.1/obj/util.o ranlib sonLib.a rm *.o mv sonLib.a ../lib/ x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -I inc -I ../lib -o ../bin/sonLibTests.tmp tests/allTests.c tests/sonLib*.c tests/st* ../lib/sonLib.a ../lib/cuTest.a -lz -lm -lm -lstdc++ -lpthread -llz4 mv ../bin/sonLibTests.tmp ../bin/sonLibTests x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -I inc -I ../lib -I tests -o ../bin/sonLib_kvDatabaseTest.tmp tests/kvDatabaseTest.c tests/kvDatabaseTestCommon.c ../lib/sonLib.a ../lib/cuTest.a -lz -lm -lm mv ../bin/sonLib_kvDatabaseTest.tmp ../bin/sonLib_kvDatabaseTest x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -I inc -I ../lib -o ../bin/sonLib_cigarTest.tmp tests/cigarsTest.c ../lib/sonLib.a -lm mv ../bin/sonLib_cigarTest.tmp ../bin/sonLib_cigarTest x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -I inc -I ../lib -o ../bin/sonLib_fastaCTest.tmp tests/fastaCTest.c ../lib/sonLib.a -lm mv ../bin/sonLib_fastaCTest.tmp ../bin/sonLib_fastaCTest make[4]: Leaving directory '/<>/deps/sonLib/C' cp sonLib_daemonize.py ./bin/sonLib_daemonize.py chmod +x ./bin/sonLib_daemonize.py make[3]: Leaving directory '/<>/deps/sonLib' . ./source_me.sh && cd ./deps/pinchesAndCacti && make && cd /<>/./deps/sonLib && cp lib/stPinchesAndCacti.a /<>/lib/libpinchesandcacti.a && cp lib/3EdgeConnected.a /<>/lib/lib3edgeconnected.a && mkdir -p /<>/include/sonLib && cp lib/*.h /<>/include/sonLib make[3]: Entering directory '/<>/deps/pinchesAndCacti' cd externalTools && make all make[4]: Entering directory '/<>/deps/pinchesAndCacti/externalTools' cd threeEdgeConnected && make all make[5]: Entering directory '/<>/deps/pinchesAndCacti/externalTools/threeEdgeConnected' x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I ../..//../sonLib/lib/ -c impl/*.c ar rc 3EdgeConnected.a *.o ranlib 3EdgeConnected.a rm *.o mv 3EdgeConnected.a ../..//../sonLib/lib/ cp inc/*.h ../..//../sonLib/lib/ x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -I inc -I../..//../sonLib/lib -o ../..//../sonLib/bin/3EdgeTests tests/*.c ../..//../sonLib/lib/3EdgeConnected.a ../..//../sonLib/lib/sonLib.a ../..//../sonLib/lib/cuTest.a -lz -lm make[5]: Leaving directory '/<>/deps/pinchesAndCacti/externalTools/threeEdgeConnected' make[4]: Leaving directory '/<>/deps/pinchesAndCacti/externalTools' x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -I inc -I .//../sonLib/lib/ -c impl/*.c ar rc stPinchesAndCacti.a *.o ranlib stPinchesAndCacti.a rm *.o mv stPinchesAndCacti.a .//../sonLib/lib/ cp inc/*.h .//../sonLib/lib/ x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -Wl,-z,relro -Wl,-z,now -I inc -I impl -I.//../sonLib/lib -o .//../sonLib/bin/stPinchesAndCactiTests tests/*.c impl/*.c .//../sonLib/lib/sonLib.a .//../sonLib/lib/cuTest.a -lz -lm .//../sonLib/lib/3EdgeConnected.a make[3]: Leaving directory '/<>/deps/pinchesAndCacti' . ./source_me.sh && cd deps/sublinear-Li-Stephens && make clean && INCLUDE_FLAGS="-I/<>/include" make libs && cp lib/libsublinearLS.a /<>/lib/ && mkdir -p /<>/include/sublinearLS && cp src/*.hpp /<>/include/sublinearLS/ make[3]: Entering directory '/<>/deps/sublinear-Li-Stephens' rm -f /<>/deps/sublinear-Li-Stephens/bin/* /<>/deps/sublinear-Li-Stephens/obj/*.o /<>/deps/sublinear-Li-Stephens/obj/test/*.o /<>/deps/sublinear-Li-Stephens/lib/* make[3]: Leaving directory '/<>/deps/sublinear-Li-Stephens' make[3]: Entering directory '/<>/deps/sublinear-Li-Stephens' if [ ! -d /<>/deps/sublinear-Li-Stephens/obj ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/obj; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/obj/test ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/obj/test; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/bin ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/bin; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/lib ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/lib; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/deps ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/deps; fi x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/math.cpp -o /<>/deps/sublinear-Li-Stephens/obj/math.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/reference.cpp -o /<>/deps/sublinear-Li-Stephens/obj/reference.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/probability.cpp -o /<>/deps/sublinear-Li-Stephens/obj/probability.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/input_haplotype.cpp -o /<>/deps/sublinear-Li-Stephens/obj/input_haplotype.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/delay_multiplier.cpp -o /<>/deps/sublinear-Li-Stephens/obj/delay_multiplier.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/DP_map.cpp -o /<>/deps/sublinear-Li-Stephens/obj/DP_map.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/penalty_set.cpp -o /<>/deps/sublinear-Li-Stephens/obj/penalty_set.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++11 -g -Wno-error=return-type -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/allele.cpp -o /<>/deps/sublinear-Li-Stephens/obj/allele.o /<>/deps/sublinear-Li-Stephens/src/allele.cpp: In function ‘char allele::to_char(alleleValue)’: /<>/deps/sublinear-Li-Stephens/src/allele.cpp:20:1: warning: control reaches end of non-void function [-Wreturn-type] 20 | } | ^ x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/row_set.cpp -o /<>/deps/sublinear-Li-Stephens/obj/row_set.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++11 -g -Wno-error=return-type -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_node.o /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp: In member function ‘size_t haplotypeStateNode::node_to_child_index(const haplotypeStateNode*) const’: /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp:96:1: warning: control reaches end of non-void function [-Wreturn-type] 96 | } | ^ x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_state_tree.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_tree.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_manager.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_manager.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/set_of_extensions.cpp -o /<>/deps/sublinear-Li-Stephens/obj/set_of_extensions.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/reference_sequence.cpp -o /<>/deps/sublinear-Li-Stephens/obj/reference_sequence.o ar rc /<>/deps/sublinear-Li-Stephens/lib/libsublinearLS.a /<>/deps/sublinear-Li-Stephens/obj/math.o /<>/deps/sublinear-Li-Stephens/obj/reference.o /<>/deps/sublinear-Li-Stephens/obj/probability.o /<>/deps/sublinear-Li-Stephens/obj/input_haplotype.o /<>/deps/sublinear-Li-Stephens/obj/delay_multiplier.o /<>/deps/sublinear-Li-Stephens/obj/DP_map.o /<>/deps/sublinear-Li-Stephens/obj/penalty_set.o /<>/deps/sublinear-Li-Stephens/obj/allele.o /<>/deps/sublinear-Li-Stephens/obj/row_set.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_node.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_tree.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_manager.o /<>/deps/sublinear-Li-Stephens/obj/set_of_extensions.o /<>/deps/sublinear-Li-Stephens/obj/reference_sequence.o ranlib /<>/deps/sublinear-Li-Stephens/lib/libsublinearLS.a make[3]: Leaving directory '/<>/deps/sublinear-Li-Stephens' . ./source_me.sh && cd deps/structures && make clean && make lib/libstructures.a && cp lib/libstructures.a /<>/lib/ && cp -r src/include/structures /<>/include/ make[3]: Entering directory '/<>/deps/structures' if [ ! -d bin ]; then mkdir -p bin; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -d lib ]; then mkdir -p lib; fi find bin obj lib -type f -delete make[3]: Leaving directory '/<>/deps/structures' make[3]: Entering directory '/<>/deps/structures' if [ ! -d bin ]; then mkdir -p bin; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -d lib ]; then mkdir -p lib; fi x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -c src/union_find.cpp -o obj/union_find.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -c src/suffix_tree.cpp -o obj/suffix_tree.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -c src/stable_double.cpp -o obj/stable_double.o rm -f lib/libstructures.a ar rs lib/libstructures.a obj/union_find.o obj/suffix_tree.o obj/stable_double.o ar: creating lib/libstructures.a make[3]: Leaving directory '/<>/deps/structures' rm -f lib/cleaned_old_protobuf* rm -f lib/libproto* lib/pkgconfig/protobuf* bin/protoc rm -Rf include/google/protobuf deps/protobuf touch lib/cleaned_old_protobuf_v003 rm -f /<>/include/vg.pb.h /<>/include/vg/vg.pb.h rm -Rf /<>/include/vg/io/ . ./source_me.sh && export CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp" && export LDFLAGS="-Wl,-z,relro -Wl,-z,now -L/<>/lib" && cd deps/libvgio && rm -Rf CMakeCache.txt CMakeFiles *.cmake install_manifest.txt *.pb.cc *.pb.h *.a && rm -rf build-vg && mkdir build-vg && cd build-vg && PKG_CONFIG_PATH=/<>/lib/pkgconfig: cmake -DCMAKE_CXX_STANDARD=14 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_PREFIX_PATH="/usr;/" -DCMAKE_INSTALL_PREFIX=/<> -DCMAKE_INSTALL_LIBDIR=lib .. && make clean && VERBOSE=1 make && make install -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") Building libvgio for C++ 14 -- Found PkgConfig: /usr/bin/x86_64-linux-gnu-pkg-config (found version "1.8.1") -- Could NOT find Protobuf (missing: Protobuf_DIR) No installed Protobuf has registered itself with CMake. -- Found Protobuf: /usr/lib/x86_64-linux-gnu/libprotobuf.so (found version "3.21.12") Found Protobuf using FindProtobuf.cmake -- Found Threads: TRUE Using real Threads library -- Checking for module 'htslib' -- Found htslib, version 1.21 -- Checking for module 'jansson' -- Found jansson, version 2.14 Using installed libhandlegraph -- Configuring done (2.6s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/libvgio/build-vg make[3]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/Makefile2 clean make[4]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/link_target.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/vgio.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/vgio_static.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/test_libvgio.dir/build.make CMakeFiles/test_libvgio.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/test_libvgio.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make[4]: Leaving directory '/<>/deps/libvgio/build-vg' make[3]: Leaving directory '/<>/deps/libvgio/build-vg' make[3]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -S/<>/deps/libvgio -B/<>/deps/libvgio/build-vg --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles /<>/deps/libvgio/build-vg//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/link_target.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E create_symlink . vg make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 0%] Built target link_target make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 2%] Running cpp protocol buffer compiler on deps/vg.proto /usr/bin/protoc --cpp_out :/<>/deps/libvgio/build-vg -I /<>/deps/libvgio/deps /<>/deps/libvgio/deps/vg.proto cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 5%] Building CXX object CMakeFiles/vgio.dir/vg.pb.cc.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/vg.pb.cc.o -MF CMakeFiles/vgio.dir/vg.pb.cc.o.d -o CMakeFiles/vgio.dir/vg.pb.cc.o -c /<>/deps/libvgio/build-vg/vg.pb.cc [ 8%] Building CXX object CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o -MF CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o.d -o CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o -c /<>/deps/libvgio/src/alignment_emitter.cpp [ 11%] Building CXX object CMakeFiles/vgio.dir/src/alignment_io.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/alignment_io.cpp.o -MF CMakeFiles/vgio.dir/src/alignment_io.cpp.o.d -o CMakeFiles/vgio.dir/src/alignment_io.cpp.o -c /<>/deps/libvgio/src/alignment_io.cpp [ 14%] Building CXX object CMakeFiles/vgio.dir/src/basic_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/basic_stream.cpp.o -MF CMakeFiles/vgio.dir/src/basic_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/basic_stream.cpp.o -c /<>/deps/libvgio/src/basic_stream.cpp [ 17%] Building CXX object CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o -MF CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_input_stream.cpp [ 20%] Building CXX object CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o -MF CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_output_stream.cpp [ 23%] Building CXX object CMakeFiles/vgio.dir/src/edit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/edit.cpp.o -MF CMakeFiles/vgio.dir/src/edit.cpp.o.d -o CMakeFiles/vgio.dir/src/edit.cpp.o -c /<>/deps/libvgio/src/edit.cpp [ 26%] Building CXX object CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o -MF CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o.d -o CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o -c /<>/deps/libvgio/src/hfile_cppstream.cpp [ 29%] Building CXX object CMakeFiles/vgio.dir/src/json2pb.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/json2pb.cpp.o -MF CMakeFiles/vgio.dir/src/json2pb.cpp.o.d -o CMakeFiles/vgio.dir/src/json2pb.cpp.o -c /<>/deps/libvgio/src/json2pb.cpp [ 32%] Building CXX object CMakeFiles/vgio.dir/src/message_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/message_emitter.cpp.o -MF CMakeFiles/vgio.dir/src/message_emitter.cpp.o.d -o CMakeFiles/vgio.dir/src/message_emitter.cpp.o -c /<>/deps/libvgio/src/message_emitter.cpp [ 35%] Building CXX object CMakeFiles/vgio.dir/src/message_iterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/message_iterator.cpp.o -MF CMakeFiles/vgio.dir/src/message_iterator.cpp.o.d -o CMakeFiles/vgio.dir/src/message_iterator.cpp.o -c /<>/deps/libvgio/src/message_iterator.cpp [ 38%] Building CXX object CMakeFiles/vgio.dir/src/registry.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/registry.cpp.o -MF CMakeFiles/vgio.dir/src/registry.cpp.o.d -o CMakeFiles/vgio.dir/src/registry.cpp.o -c /<>/deps/libvgio/src/registry.cpp [ 41%] Building CXX object CMakeFiles/vgio.dir/src/stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/stream.cpp.o -MF CMakeFiles/vgio.dir/src/stream.cpp.o.d -o CMakeFiles/vgio.dir/src/stream.cpp.o -c /<>/deps/libvgio/src/stream.cpp [ 44%] Building CXX object CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o -MF CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o.d -o CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o -c /<>/deps/libvgio/src/stream_multiplexer.cpp [ 47%] Building CXX object CMakeFiles/vgio.dir/src/vpkg.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/vpkg.cpp.o -MF CMakeFiles/vgio.dir/src/vpkg.cpp.o.d -o CMakeFiles/vgio.dir/src/vpkg.cpp.o -c /<>/deps/libvgio/src/vpkg.cpp [ 50%] Linking CXX shared library libvgio.so /usr/bin/cmake -E cmake_link_script CMakeFiles/vgio.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -Wl,--dependency-file=CMakeFiles/vgio.dir/link.d -Wl,-z,relro -Wl,-z,now -L/<>/lib -shared -Wl,-soname,libvgio.so -o libvgio.so CMakeFiles/vgio.dir/vg.pb.cc.o CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o CMakeFiles/vgio.dir/src/alignment_io.cpp.o CMakeFiles/vgio.dir/src/basic_stream.cpp.o CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o CMakeFiles/vgio.dir/src/edit.cpp.o CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o CMakeFiles/vgio.dir/src/json2pb.cpp.o CMakeFiles/vgio.dir/src/message_emitter.cpp.o CMakeFiles/vgio.dir/src/message_iterator.cpp.o CMakeFiles/vgio.dir/src/registry.cpp.o CMakeFiles/vgio.dir/src/stream.cpp.o CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o CMakeFiles/vgio.dir/src/vpkg.cpp.o /usr/lib/x86_64-linux-gnu/libprotobuf.so -lhts -ljansson /<>/lib/libhandlegraph.so make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 50%] Built target vgio make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 52%] Building CXX object CMakeFiles/vgio_static.dir/vg.pb.cc.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/vg.pb.cc.o -MF CMakeFiles/vgio_static.dir/vg.pb.cc.o.d -o CMakeFiles/vgio_static.dir/vg.pb.cc.o -c /<>/deps/libvgio/build-vg/vg.pb.cc [ 55%] Building CXX object CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o -MF CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o.d -o CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o -c /<>/deps/libvgio/src/alignment_emitter.cpp [ 58%] Building CXX object CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o -MF CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o.d -o CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o -c /<>/deps/libvgio/src/alignment_io.cpp [ 61%] Building CXX object CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o -c /<>/deps/libvgio/src/basic_stream.cpp [ 64%] Building CXX object CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_input_stream.cpp [ 67%] Building CXX object CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_output_stream.cpp [ 70%] Building CXX object CMakeFiles/vgio_static.dir/src/edit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/edit.cpp.o -MF CMakeFiles/vgio_static.dir/src/edit.cpp.o.d -o CMakeFiles/vgio_static.dir/src/edit.cpp.o -c /<>/deps/libvgio/src/edit.cpp [ 73%] Building CXX object CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o -MF CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o -c /<>/deps/libvgio/src/hfile_cppstream.cpp [ 76%] Building CXX object CMakeFiles/vgio_static.dir/src/json2pb.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/json2pb.cpp.o -MF CMakeFiles/vgio_static.dir/src/json2pb.cpp.o.d -o CMakeFiles/vgio_static.dir/src/json2pb.cpp.o -c /<>/deps/libvgio/src/json2pb.cpp [ 79%] Building CXX object CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o -MF CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o.d -o CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o -c /<>/deps/libvgio/src/message_emitter.cpp [ 82%] Building CXX object CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o -MF CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o.d -o CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o -c /<>/deps/libvgio/src/message_iterator.cpp [ 85%] Building CXX object CMakeFiles/vgio_static.dir/src/registry.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/registry.cpp.o -MF CMakeFiles/vgio_static.dir/src/registry.cpp.o.d -o CMakeFiles/vgio_static.dir/src/registry.cpp.o -c /<>/deps/libvgio/src/registry.cpp [ 88%] Building CXX object CMakeFiles/vgio_static.dir/src/stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/stream.cpp.o -c /<>/deps/libvgio/src/stream.cpp [ 91%] Building CXX object CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o -MF CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o.d -o CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o -c /<>/deps/libvgio/src/stream_multiplexer.cpp [ 94%] Building CXX object CMakeFiles/vgio_static.dir/src/vpkg.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/vpkg.cpp.o -MF CMakeFiles/vgio_static.dir/src/vpkg.cpp.o.d -o CMakeFiles/vgio_static.dir/src/vpkg.cpp.o -c /<>/deps/libvgio/src/vpkg.cpp [ 97%] Linking CXX static library libvgio.a /usr/bin/cmake -P CMakeFiles/vgio_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/vgio_static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libvgio.a CMakeFiles/vgio_static.dir/vg.pb.cc.o CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o CMakeFiles/vgio_static.dir/src/edit.cpp.o CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o CMakeFiles/vgio_static.dir/src/json2pb.cpp.o CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o CMakeFiles/vgio_static.dir/src/registry.cpp.o CMakeFiles/vgio_static.dir/src/stream.cpp.o CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o CMakeFiles/vgio_static.dir/src/vpkg.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libvgio.a make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [100%] Built target vgio_static make[4]: Leaving directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles 0 make[3]: Leaving directory '/<>/deps/libvgio/build-vg' make[3]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -S/<>/deps/libvgio -B/<>/deps/libvgio/build-vg --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles /<>/deps/libvgio/build-vg//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/link_target.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E create_symlink . vg make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 0%] Built target link_target make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' make[5]: Nothing to be done for 'CMakeFiles/vgio.dir/build'. make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 50%] Built target vgio make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' make[5]: Nothing to be done for 'CMakeFiles/vgio_static.dir/build'. make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [100%] Built target vgio_static make[4]: Leaving directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/libvgio/build-vg' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/libvgio/build-vg' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /<>/lib/libvgio.so -- Installing: /<>/lib/libvgio.a -- Up-to-date: /<>/include -- Up-to-date: /<>/include/vg -- Installing: /<>/include/vg/io -- Installing: /<>/include/vg/io/vpkg.hpp -- Installing: /<>/include/vg/io/stream_multiplexer.hpp -- Installing: /<>/include/vg/io/stream.hpp -- Installing: /<>/include/vg/io/registry.hpp -- Installing: /<>/include/vg/io/protobuf_iterator.hpp -- Installing: /<>/include/vg/io/protobuf_emitter.hpp -- Installing: /<>/include/vg/io/message_iterator.hpp -- Installing: /<>/include/vg/io/message_emitter.hpp -- Installing: /<>/include/vg/io/loader.hpp -- Installing: /<>/include/vg/io/json2pb.h -- Installing: /<>/include/vg/io/hfile_internal.hpp -- Installing: /<>/include/vg/io/hfile_cppstream.hpp -- Installing: /<>/include/vg/io/gafkluge.hpp -- Installing: /<>/include/vg/io/fdstream.hpp -- Installing: /<>/include/vg/io/edit.hpp -- Installing: /<>/include/vg/io/blocked_gzip_output_stream.hpp -- Installing: /<>/include/vg/io/blocked_gzip_input_stream.hpp -- Installing: /<>/include/vg/io/basic_stream.hpp -- Installing: /<>/include/vg/io/alignment_io.hpp -- Installing: /<>/include/vg/io/alignment_emitter.hpp -- Installing: /<>/include/vg/vg.pb.h -- Installing: /<>/lib/cmake/VGio/VGioTargets.cmake -- Installing: /<>/lib/cmake/VGio/VGioTargets-noconfig.cmake -- Installing: /<>/lib/cmake/VGio/VGioConfig.cmake -- Installing: /<>/lib/cmake/VGio/VGioConfigVersion.cmake make[3]: Leaving directory '/<>/deps/libvgio/build-vg' rm -Rf include/dynamic.hpp include/dynamic # annoyingly doesn't have an install option on the cmake, so we manually move their external dependency headers cd /<>/deps/DYNAMIC && rm -Rf build && mkdir -p build && cd build && export CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp" && cmake -DCMAKE_VERBOSE_MAKEFILE=ON .. && make CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Setting build type to 'Release' as none was specified. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Building in Release mode -- Configuring done (1.6s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/DYNAMIC/build make[3]: Entering directory '/<>/deps/DYNAMIC/build' /usr/bin/cmake -S/<>/deps/DYNAMIC -B/<>/deps/DYNAMIC/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/DYNAMIC/build/CMakeFiles /<>/deps/DYNAMIC/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/DYNAMIC/build' make -f CMakeFiles/debug.dir/build.make CMakeFiles/debug.dir/depend make[5]: Entering directory '/<>/deps/DYNAMIC/build' cd /<>/deps/DYNAMIC/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/DYNAMIC /<>/deps/DYNAMIC /<>/deps/DYNAMIC/build /<>/deps/DYNAMIC/build /<>/deps/DYNAMIC/build/CMakeFiles/debug.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/DYNAMIC/build' make -f CMakeFiles/debug.dir/build.make CMakeFiles/debug.dir/build make[5]: Entering directory '/<>/deps/DYNAMIC/build' [ 6%] Building CXX object CMakeFiles/debug.dir/debug.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/DYNAMIC/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse4.1 -fopenmp --std=c++11 -O3 -DNDEBUG -ggdb -Ofast -fstrict-aliasing -DNDEBUG -march=native -MD -MT CMakeFiles/debug.dir/debug.cpp.o -MF CMakeFiles/debug.dir/debug.cpp.o.d -o CMakeFiles/debug.dir/debug.cpp.o -c /<>/deps/DYNAMIC/debug.cpp cc1plus: error: bad value ‘native’ for ‘-march=’ switch cc1plus: note: valid arguments to ‘-march=’ switch are: nocona core2 nehalem corei7 westmere sandybridge corei7-avx ivybridge core-avx-i haswell core-avx2 broadwell skylake skylake-avx512 cannonlake icelake-client rocketlake icelake-server cascadelake tigerlake cooperlake sapphirerapids emeraldrapids alderlake raptorlake meteorlake graniterapids graniterapids-d arrowlake arrowlake-s lunarlake pantherlake bonnell atom silvermont slm goldmont goldmont-plus tremont gracemont sierraforest grandridge clearwaterforest knl knm x86-64 x86-64-v2 x86-64-v3 x86-64-v4 eden-x2 nano nano-1000 nano-2000 nano-3000 nano-x2 eden-x4 nano-x4 lujiazui yongfeng k8 k8-sse3 opteron opteron-sse3 athlon64 athlon64-sse3 athlon-fx amdfam10 barcelona bdver1 bdver2 bdver3 bdver4 znver1 znver2 znver3 znver4 znver5 btver1 btver2 make[5]: *** [CMakeFiles/debug.dir/build.make:82: CMakeFiles/debug.dir/debug.cpp.o] Error 1 make[5]: Leaving directory '/<>/deps/DYNAMIC/build' make[4]: *** [CMakeFiles/Makefile2:111: CMakeFiles/debug.dir/all] Error 2 make[4]: Leaving directory '/<>/deps/DYNAMIC/build' make[3]: *** [Makefile:94: all] Error 2 make[3]: Leaving directory '/<>/deps/DYNAMIC/build' make[2]: *** [Makefile:607: include/dynamic/dynamic.hpp] Error 2 make[2]: Leaving directory '/<>' dh_auto_build: error: make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc SFX=-sse4.1 all test/build_graph bin/shuf returned exit code 2 make[2]: Entering directory '/<>' Package libfastahack was not found in the pkg-config search path. Perhaps you should add the directory containing `libfastahack.pc' to the PKG_CONFIG_PATH environment variable Package 'libfastahack', required by 'virtual:world', not found Package cairo was not found in the pkg-config search path. Perhaps you should add the directory containing `cairo.pc' to the PKG_CONFIG_PATH environment variable Package 'cairo', required by 'virtual:world', not found Package 'libzstd', required by 'virtual:world', not found Package 'protobuf', required by 'virtual:world', not found Package 'jansson', required by 'virtual:world', not found Package libfastahack was not found in the pkg-config search path. Perhaps you should add the directory containing `libfastahack.pc' to the PKG_CONFIG_PATH environment variable Package 'libfastahack', required by 'virtual:world', not found Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable Package 'htslib', required by 'virtual:world', not found Package cairo was not found in the pkg-config search path. Perhaps you should add the directory containing `cairo.pc' to the PKG_CONFIG_PATH environment variable Package 'cairo', required by 'virtual:world', not found Package 'libzstd', required by 'virtual:world', not found Package protobuf was not found in the pkg-config search path. Perhaps you should add the directory containing `protobuf.pc' to the PKG_CONFIG_PATH environment variable Package 'protobuf', required by 'virtual:world', not found Package 'jansson', required by 'virtual:world', not found OS is Linux Compiler g++ is assumed to be GCC CXXFLAGS are -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp LDFLAGS are -Wl,-z,relro -Wl,-z,now Makefile:266: OpenMP header omp.h is not available! vg will not be able to build! rm -f -r bin/unittest rm -f -r lib rm -f -r obj/unittest/support rm -f -r obj/unittest rm -f -r obj/subcommand rm -f -r obj/pic/io rm -f -r obj/io rm -f -r obj/pic/algorithms rm -f -r obj/algorithms rm -f -r obj/config rm -f -r obj/pic rm -f -r obj rm -f -r share/ cd ./deps && cd sonLib && make clean make[3]: Entering directory '/<>/deps/sonLib' cd C && make clean make[4]: Entering directory '/<>/deps/sonLib/C' rm -rf ../bin ../lib make[4]: Leaving directory '/<>/deps/sonLib/C' cd externalTools && make clean make[4]: Entering directory '/<>/deps/sonLib/externalTools' cd cutest && make clean make[5]: Entering directory '/<>/deps/sonLib/externalTools/cutest' rm -f ../../lib/cuTest.a ../../lib/CuTest.h make[5]: Leaving directory '/<>/deps/sonLib/externalTools/cutest' cd quicktree_1.1 && make clean make[5]: Entering directory '/<>/deps/sonLib/externalTools/quicktree_1.1' rm -rf ./obj/*.o make[5]: Leaving directory '/<>/deps/sonLib/externalTools/quicktree_1.1' make[4]: Leaving directory '/<>/deps/sonLib/externalTools' rm -f ./bin/sonLib_daemonize.py make[3]: Leaving directory '/<>/deps/sonLib' cd ./deps && cd gcsa2 && make clean make[3]: Entering directory '/<>/deps/gcsa2' rm -rf bin lib obj rm -f *.o *.a build_gcsa convert_graph gcsa_format try_extend cd benchmark && make clean make[4]: Entering directory '/<>/deps/gcsa2/benchmark' rm -f count_kmers query_gcsa csa_builder csa_query *.o make[4]: Leaving directory '/<>/deps/gcsa2/benchmark' make[3]: Leaving directory '/<>/deps/gcsa2' cd ./deps && cd gbwt && make clean make[3]: Entering directory '/<>/deps/gbwt' rm -rf bin lib obj rm -f *.o *.a build_gbwt build_ri merge_gbwt benchmark metadata_tool remove_seq cd tests && make clean make[4]: Entering directory '/<>/deps/gbwt/tests' rm -f test_bwtmerge test_metadata test_queries test_support test_variants *.o make[4]: Leaving directory '/<>/deps/gbwt/tests' make[3]: Leaving directory '/<>/deps/gbwt' cd ./deps && cd gbwtgraph && make clean make[3]: Entering directory '/<>/deps/gbwtgraph' rm -rf bin lib obj rm -f *.o *.a gfa2gbwt cd tests && make clean make[4]: Entering directory '/<>/deps/gbwtgraph/tests' rm -f test_utils test_gbwtgraph test_cached_gbwtgraph test_gfa test_gbz test_minimizer test_index test_algorithms test_path_cover *.o make[4]: Leaving directory '/<>/deps/gbwtgraph/tests' make[3]: Leaving directory '/<>/deps/gbwtgraph' cd ./deps && cd kff-cpp-api && rm -Rf build cd ./deps && cd gssw && make clean make[3]: Entering directory '/<>/deps/gssw' rm -f -r lib/ rm -f -r bin/ rm -f -r obj/ make[3]: Leaving directory '/<>/deps/gssw' cd ./deps && cd ssw && cd src && make clean make[3]: Entering directory '/<>/deps/ssw/src' rm -f ssw.o ssw_cpp.o ssw_test libssw.so example_c example_cpp libsswjni.so ssw.jar ssw/Aligner.class ssw/Alignment.class ssw/Example.class *~ make[3]: Leaving directory '/<>/deps/ssw/src' cd ./deps && cd progress_bar && make clean make[3]: Entering directory '/<>/deps/progress_bar' make[3]: Leaving directory '/<>/deps/progress_bar' cd ./deps && cd sdsl-lite && ./uninstall.sh || true Library files will be removed from '/var/lib/sbuild/lib' and '/var/lib/sbuild/include' make[3]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 uninstall-sdsl make[4]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 CMakeFiles/uninstall-sdsl.dir/all make[5]: Entering directory '/<>/deps/sdsl-lite/build' make -f CMakeFiles/uninstall-sdsl.dir/build.make CMakeFiles/uninstall-sdsl.dir/depend make[6]: Entering directory '/<>/deps/sdsl-lite/build' cd /<>/deps/sdsl-lite/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/sdsl-lite /<>/deps/sdsl-lite /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build/CMakeFiles/uninstall-sdsl.dir/DependInfo.cmake "--color=" make[6]: Leaving directory '/<>/deps/sdsl-lite/build' make -f CMakeFiles/uninstall-sdsl.dir/build.make CMakeFiles/uninstall-sdsl.dir/build make[6]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -P /<>/deps/sdsl-lite/build/CMakeModules/cmake_uninstall.cmake -- Looking for "/<>/lib/pkgconfig/sdsl-lite.pc" - not found -- Looking for "/<>/include/sdsl/bit_vector_il.hpp" - found -- Looking for "/<>/include/sdsl/bit_vectors.hpp" - found -- Looking for "/<>/include/sdsl/bits.hpp" - found -- Looking for "/<>/include/sdsl/bp_support.hpp" - found -- Looking for "/<>/include/sdsl/bp_support_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/bp_support_g.hpp" - found -- Looking for "/<>/include/sdsl/bp_support_gg.hpp" - found -- Looking for "/<>/include/sdsl/bp_support_sada.hpp" - found -- Looking for "/<>/include/sdsl/coder.hpp" - found -- Looking for "/<>/include/sdsl/coder_comma.hpp" - found -- Looking for "/<>/include/sdsl/coder_elias_delta.hpp" - found -- Looking for "/<>/include/sdsl/coder_elias_gamma.hpp" - found -- Looking for "/<>/include/sdsl/coder_fibonacci.hpp" - found -- Looking for "/<>/include/sdsl/config.hpp" - found -- Looking for "/<>/include/sdsl/construct.hpp" - found -- Looking for "/<>/include/sdsl/construct_bwt.hpp" - found -- Looking for "/<>/include/sdsl/construct_config.hpp" - found -- Looking for "/<>/include/sdsl/construct_isa.hpp" - found -- Looking for "/<>/include/sdsl/construct_lcp.hpp" - found -- Looking for "/<>/include/sdsl/construct_lcp_helper.hpp" - found -- Looking for "/<>/include/sdsl/construct_sa.hpp" - found -- Looking for "/<>/include/sdsl/construct_sa_se.hpp" - found -- Looking for "/<>/include/sdsl/csa_alphabet_strategy.hpp" - found -- Looking for "/<>/include/sdsl/csa_bitcompressed.hpp" - found -- Looking for "/<>/include/sdsl/csa_sada.hpp" - found -- Looking for "/<>/include/sdsl/csa_sampling_strategy.hpp" - found -- Looking for "/<>/include/sdsl/csa_wt.hpp" - found -- Looking for "/<>/include/sdsl/cst_fully.hpp" - found -- Looking for "/<>/include/sdsl/cst_iterators.hpp" - found -- Looking for "/<>/include/sdsl/cst_sada.hpp" - found -- Looking for "/<>/include/sdsl/cst_sct3.hpp" - found -- Looking for "/<>/include/sdsl/dac_vector.hpp" - found -- Looking for "/<>/include/sdsl/enc_vector.hpp" - found -- Looking for "/<>/include/sdsl/fast_cache.hpp" - found -- Looking for "/<>/include/sdsl/hyb_vector.hpp" - found -- Looking for "/<>/include/sdsl/int_vector.hpp" - found -- Looking for "/<>/include/sdsl/int_vector_buffer.hpp" - found -- Looking for "/<>/include/sdsl/int_vector_io_wrappers.hpp" - found -- Looking for "/<>/include/sdsl/int_vector_mapper.hpp" - found -- Looking for "/<>/include/sdsl/inv_perm_support.hpp" - found -- Looking for "/<>/include/sdsl/io.hpp" - found -- Looking for "/<>/include/sdsl/iterators.hpp" - found -- Looking for "/<>/include/sdsl/k2_treap.hpp" - found -- Looking for "/<>/include/sdsl/k2_treap_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/k2_treap_helper.hpp" - found -- Looking for "/<>/include/sdsl/k2_tree.hpp" - found -- Looking for "/<>/include/sdsl/k2_tree_helper.hpp" - found -- Looking for "/<>/include/sdsl/lcp.hpp" - found -- Looking for "/<>/include/sdsl/lcp_bitcompressed.hpp" - found -- Looking for "/<>/include/sdsl/lcp_byte.hpp" - found -- Looking for "/<>/include/sdsl/lcp_dac.hpp" - found -- Looking for "/<>/include/sdsl/lcp_support_sada.hpp" - found -- Looking for "/<>/include/sdsl/lcp_support_tree.hpp" - found -- Looking for "/<>/include/sdsl/lcp_support_tree2.hpp" - found -- Looking for "/<>/include/sdsl/lcp_vlc.hpp" - found -- Looking for "/<>/include/sdsl/lcp_wt.hpp" - found -- Looking for "/<>/include/sdsl/louds_tree.hpp" - found -- Looking for "/<>/include/sdsl/memory_management.hpp" - found -- Looking for "/<>/include/sdsl/nearest_neighbour_dictionary.hpp" - found -- Looking for "/<>/include/sdsl/nn_dict_dynamic.hpp" - found -- Looking for "/<>/include/sdsl/qsufsort.hpp" - found -- Looking for "/<>/include/sdsl/ram_filebuf.hpp" - found -- Looking for "/<>/include/sdsl/ram_fs.hpp" - found -- Looking for "/<>/include/sdsl/rank_support.hpp" - found -- Looking for "/<>/include/sdsl/rank_support_scan.hpp" - found -- Looking for "/<>/include/sdsl/rank_support_v.hpp" - found -- Looking for "/<>/include/sdsl/rank_support_v5.hpp" - found -- Looking for "/<>/include/sdsl/raster_img.hpp" - found -- Looking for "/<>/include/sdsl/rle_vector.hpp" - found -- Looking for "/<>/include/sdsl/rmq_succinct_sada.hpp" - found -- Looking for "/<>/include/sdsl/rmq_succinct_sct.hpp" - found -- Looking for "/<>/include/sdsl/rmq_support.hpp" - found -- Looking for "/<>/include/sdsl/rmq_support_sparse_table.hpp" - found -- Looking for "/<>/include/sdsl/rrr_helper.hpp" - found -- Looking for "/<>/include/sdsl/rrr_vector.hpp" - found -- Looking for "/<>/include/sdsl/rrr_vector_15.hpp" - found -- Looking for "/<>/include/sdsl/sd_vector.hpp" - found -- Looking for "/<>/include/sdsl/sdsl_concepts.hpp" - found -- Looking for "/<>/include/sdsl/select_support.hpp" - found -- Looking for "/<>/include/sdsl/select_support_mcl.hpp" - found -- Looking for "/<>/include/sdsl/select_support_scan.hpp" - found -- Looking for "/<>/include/sdsl/sfstream.hpp" - found -- Looking for "/<>/include/sdsl/simple_sds.hpp" - found -- Looking for "/<>/include/sdsl/sorted_int_stack.hpp" - found -- Looking for "/<>/include/sdsl/sorted_multi_stack_support.hpp" - found -- Looking for "/<>/include/sdsl/sorted_stack_support.hpp" - found -- Looking for "/<>/include/sdsl/structure_tree.hpp" - found -- Looking for "/<>/include/sdsl/suffix_array_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/suffix_array_helper.hpp" - found -- Looking for "/<>/include/sdsl/suffix_arrays.hpp" - found -- Looking for "/<>/include/sdsl/suffix_tree_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/suffix_tree_helper.hpp" - found -- Looking for "/<>/include/sdsl/suffix_trees.hpp" - found -- Looking for "/<>/include/sdsl/uint128_t.hpp" - found -- Looking for "/<>/include/sdsl/uint256_t.hpp" - found -- Looking for "/<>/include/sdsl/uintx_t.hpp" - found -- Looking for "/<>/include/sdsl/util.hpp" - found -- Looking for "/<>/include/sdsl/vectors.hpp" - found -- Looking for "/<>/include/sdsl/vlc_vector.hpp" - found -- Looking for "/<>/include/sdsl/wavelet_trees.hpp" - found -- Looking for "/<>/include/sdsl/wm_int.hpp" - found -- Looking for "/<>/include/sdsl/wt_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/wt_ap.hpp" - found -- Looking for "/<>/include/sdsl/wt_blcd.hpp" - found -- Looking for "/<>/include/sdsl/wt_gmr.hpp" - found -- Looking for "/<>/include/sdsl/wt_helper.hpp" - found -- Looking for "/<>/include/sdsl/wt_huff.hpp" - found -- Looking for "/<>/include/sdsl/wt_hutu.hpp" - found -- Looking for "/<>/include/sdsl/wt_int.hpp" - found -- Looking for "/<>/include/sdsl/wt_pc.hpp" - found -- Looking for "/<>/include/sdsl/wt_rlmn.hpp" - found -- Looking for "/<>/lib/libsdsl.a" - not found -- Uninstalling "/<>/include/sdsl/bit_vector_il.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bit_vectors.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bits.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support_g.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support_gg.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder_comma.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder_elias_delta.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder_elias_gamma.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder_fibonacci.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/config.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_bwt.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_config.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_isa.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_lcp.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_lcp_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_sa.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_sa_se.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_alphabet_strategy.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_bitcompressed.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_sampling_strategy.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_wt.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/cst_fully.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/cst_iterators.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/cst_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/cst_sct3.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/dac_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/enc_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/fast_cache.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/hyb_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/int_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/int_vector_buffer.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/int_vector_io_wrappers.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/int_vector_mapper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/inv_perm_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/io.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/iterators.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_treap.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_treap_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_treap_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_tree.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_tree_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_bitcompressed.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_byte.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_dac.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_support_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_support_tree.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_support_tree2.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_vlc.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_wt.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/louds_tree.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/memory_management.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/nearest_neighbour_dictionary.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/nn_dict_dynamic.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/qsufsort.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/ram_filebuf.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/ram_fs.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rank_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rank_support_scan.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rank_support_v.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rank_support_v5.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/raster_img.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rle_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rmq_succinct_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rmq_succinct_sct.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rmq_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rmq_support_sparse_table.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rrr_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rrr_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rrr_vector_15.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sd_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sdsl_concepts.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/select_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/select_support_mcl.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/select_support_scan.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sfstream.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/simple_sds.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sorted_int_stack.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sorted_multi_stack_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sorted_stack_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/structure_tree.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_array_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_array_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_arrays.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_tree_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_tree_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_trees.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/uint128_t.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/uint256_t.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/uintx_t.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/util.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/vectors.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/vlc_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wavelet_trees.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wm_int.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_ap.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_blcd.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_gmr.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_huff.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_hutu.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_int.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_pc.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_rlmn.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. make[6]: Leaving directory '/<>/deps/sdsl-lite/build' Built target uninstall-sdsl make[5]: Leaving directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make[4]: Leaving directory '/<>/deps/sdsl-lite/build' make[3]: Leaving directory '/<>/deps/sdsl-lite/build' Installed sdsl files were removed. cd ./deps && cd sha1 && make clean make[3]: Entering directory '/<>/deps/sha1' rm -f demo_sha1 test_sha1 make[3]: Leaving directory '/<>/deps/sha1' cd ./deps && cd structures && make clean make[3]: Entering directory '/<>/deps/structures' if [ ! -d bin ]; then mkdir -p bin; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -d lib ]; then mkdir -p lib; fi find bin obj lib -type f -delete make[3]: Leaving directory '/<>/deps/structures' cd ./deps && cd sublinear-Li-Stephens && make clean make[3]: Entering directory '/<>/deps/sublinear-Li-Stephens' rm -f /<>/deps/sublinear-Li-Stephens/bin/* /<>/deps/sublinear-Li-Stephens/obj/*.o /<>/deps/sublinear-Li-Stephens/obj/test/*.o /<>/deps/sublinear-Li-Stephens/lib/* make[3]: Leaving directory '/<>/deps/sublinear-Li-Stephens' cd ./deps && cd libhandlegraph && rm -Rf build CMakeCache.txt CMakeFiles cd ./deps && cd libvgio && rm -Rf build CMakeCache.txt CMakeFiles # lru_cache is never built because it is header-only # bash-tap is never built either make[2]: Leaving directory '/<>' make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc SFX=-ssse3 all test/build_graph bin/shuf make[2]: Entering directory '/<>' OS is Linux Compiler x86_64-linux-gnu-g++ is assumed to be GCC CXXFLAGS are -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp LDFLAGS are -Wl,-z,relro -Wl,-z,now . ./source_me.sh && cd deps/sdsl-lite && BUILD_PORTABLE=1 CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp" ./install.sh /<> Library will be installed in '/<>' WARNING: .git/hooks directory does not exists. The pre-commit hook is not installed. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Compiler is recent enough to support C++14. -- Performing Test HAVE_GCC_STD=C__14__WALL__WEXTRA__DNDEBUG -- Performing Test HAVE_GCC_STD=C__14__WALL__WEXTRA__DNDEBUG - Success -- Performing Test HAVE_GCC_O3__FFAST_MATH__FUNROLL_LOOPS -- Performing Test HAVE_GCC_O3__FFAST_MATH__FUNROLL_LOOPS - Success -- Performing Test HAVE_CXA_DEMANGLE -- Performing Test HAVE_CXA_DEMANGLE - Success -- Compiler supports DEMANGLE. -- Performing Test HAVE_GCC_DHAVE_CXA_DEMANGLE -- Performing Test HAVE_GCC_DHAVE_CXA_DEMANGLE - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) CMake Warning at CMakeLists.txt:102 (message): git not found. Cloning of submodules will not work. -- Looking for C++ include cstdio -- Looking for C++ include cstdio - found -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (4.5s) -- Generating done (0.6s) -- Build files have been written to: /<>/deps/sdsl-lite/build make[3]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 sdsl make[4]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 8 make -f CMakeFiles/Makefile2 lib/CMakeFiles/sdsl.dir/all make[5]: Entering directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/depend make[6]: Entering directory '/<>/deps/sdsl-lite/build' cd /<>/deps/sdsl-lite/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/sdsl-lite /<>/deps/sdsl-lite/lib /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build/lib /<>/deps/sdsl-lite/build/lib/CMakeFiles/sdsl.dir/DependInfo.cmake "--color=" make[6]: Leaving directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/build make[6]: Entering directory '/<>/deps/sdsl-lite/build' [ 0%] Building CXX object lib/CMakeFiles/sdsl.dir/bits.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/bits.cpp.o -MF CMakeFiles/sdsl.dir/bits.cpp.o.d -o CMakeFiles/sdsl.dir/bits.cpp.o -c /<>/deps/sdsl-lite/lib/bits.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o -MF CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o.d -o CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o -c /<>/deps/sdsl-lite/lib/bp_support_algorithm.cpp In file included from /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:24, from /<>/deps/sdsl-lite/build/lib/../include/sdsl/bp_support_algorithm.hpp:24, from /<>/deps/sdsl-lite/lib/bp_support_algorithm.cpp:1: In static member function ‘static void sdsl::bits::write_int(uint64_t*, uint64_t, uint8_t, uint8_t)’, inlined from ‘static void sdsl::memory_manager::resize(t_vec&, typename t_vec::size_type) [with t_vec = sdsl::int_vector<0>]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/memory_management.hpp:364:36, inlined from ‘void sdsl::int_vector< >::bit_resize(size_type) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:1358:27, inlined from ‘void sdsl::int_vector< >::resize(size_type) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:380:23, inlined from ‘sdsl::int_vector< >::int_vector(size_type, value_type, uint8_t) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:1285:11, inlined from ‘sdsl::excess::impl::impl()’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/bp_support_algorithm.hpp:114:46: /<>/deps/sdsl-lite/build/lib/../include/sdsl/bits.hpp:448:9: warning: ‘*temp’ may be used uninitialized [-Wmaybe-uninitialized] 448 | *word &= | ^~~~~ [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o -MF CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o.d -o CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o -c /<>/deps/sdsl-lite/lib/coder_elias_delta.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o -MF CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o.d -o CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o -c /<>/deps/sdsl-lite/lib/coder_elias_gamma.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o -MF CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o.d -o CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o -c /<>/deps/sdsl-lite/lib/coder_fibonacci.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/config.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/config.cpp.o -MF CMakeFiles/sdsl.dir/config.cpp.o.d -o CMakeFiles/sdsl.dir/config.cpp.o -c /<>/deps/sdsl-lite/lib/config.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_config.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_config.cpp.o -MF CMakeFiles/sdsl.dir/construct_config.cpp.o.d -o CMakeFiles/sdsl.dir/construct_config.cpp.o -c /<>/deps/sdsl-lite/lib/construct_config.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o -MF CMakeFiles/sdsl.dir/construct_isa.cpp.o.d -o CMakeFiles/sdsl.dir/construct_isa.cpp.o -c /<>/deps/sdsl-lite/lib/construct_isa.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o -MF CMakeFiles/sdsl.dir/construct_lcp.cpp.o.d -o CMakeFiles/sdsl.dir/construct_lcp.cpp.o -c /<>/deps/sdsl-lite/lib/construct_lcp.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o -MF CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o.d -o CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o -c /<>/deps/sdsl-lite/lib/construct_lcp_helper.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o -MF CMakeFiles/sdsl.dir/construct_sa.cpp.o.d -o CMakeFiles/sdsl.dir/construct_sa.cpp.o -c /<>/deps/sdsl-lite/lib/construct_sa.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o -MF CMakeFiles/sdsl.dir/construct_sa_se.cpp.o.d -o CMakeFiles/sdsl.dir/construct_sa_se.cpp.o -c /<>/deps/sdsl-lite/lib/construct_sa_se.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o -MF CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o.d -o CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o -c /<>/deps/sdsl-lite/lib/csa_alphabet_strategy.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/io.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/io.cpp.o -MF CMakeFiles/sdsl.dir/io.cpp.o.d -o CMakeFiles/sdsl.dir/io.cpp.o -c /<>/deps/sdsl-lite/lib/io.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o -MF CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o.d -o CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o -c /<>/deps/sdsl-lite/lib/lcp_support_tree.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o -MF CMakeFiles/sdsl.dir/louds_tree.cpp.o.d -o CMakeFiles/sdsl.dir/louds_tree.cpp.o -c /<>/deps/sdsl-lite/lib/louds_tree.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/memory_management.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/memory_management.cpp.o -MF CMakeFiles/sdsl.dir/memory_management.cpp.o.d -o CMakeFiles/sdsl.dir/memory_management.cpp.o -c /<>/deps/sdsl-lite/lib/memory_management.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o -MF CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o.d -o CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o -c /<>/deps/sdsl-lite/lib/nn_dict_dynamic.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_filebuf.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/ram_filebuf.cpp.o -MF CMakeFiles/sdsl.dir/ram_filebuf.cpp.o.d -o CMakeFiles/sdsl.dir/ram_filebuf.cpp.o -c /<>/deps/sdsl-lite/lib/ram_filebuf.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_fs.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/ram_fs.cpp.o -MF CMakeFiles/sdsl.dir/ram_fs.cpp.o.d -o CMakeFiles/sdsl.dir/ram_fs.cpp.o -c /<>/deps/sdsl-lite/lib/ram_fs.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o -MF CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o.d -o CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o -c /<>/deps/sdsl-lite/lib/rrr_vector_15.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/sd_vector.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/sd_vector.cpp.o -MF CMakeFiles/sdsl.dir/sd_vector.cpp.o.d -o CMakeFiles/sdsl.dir/sd_vector.cpp.o -c /<>/deps/sdsl-lite/lib/sd_vector.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/sfstream.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/sfstream.cpp.o -MF CMakeFiles/sdsl.dir/sfstream.cpp.o.d -o CMakeFiles/sdsl.dir/sfstream.cpp.o -c /<>/deps/sdsl-lite/lib/sfstream.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/simple_sds.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/simple_sds.cpp.o -MF CMakeFiles/sdsl.dir/simple_sds.cpp.o.d -o CMakeFiles/sdsl.dir/simple_sds.cpp.o -c /<>/deps/sdsl-lite/lib/simple_sds.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/structure_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/structure_tree.cpp.o -MF CMakeFiles/sdsl.dir/structure_tree.cpp.o.d -o CMakeFiles/sdsl.dir/structure_tree.cpp.o -c /<>/deps/sdsl-lite/lib/structure_tree.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/uint128_t.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/uint128_t.cpp.o -MF CMakeFiles/sdsl.dir/uint128_t.cpp.o.d -o CMakeFiles/sdsl.dir/uint128_t.cpp.o -c /<>/deps/sdsl-lite/lib/uint128_t.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/uint256_t.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/uint256_t.cpp.o -MF CMakeFiles/sdsl.dir/uint256_t.cpp.o.d -o CMakeFiles/sdsl.dir/uint256_t.cpp.o -c /<>/deps/sdsl-lite/lib/uint256_t.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/util.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/util.cpp.o -MF CMakeFiles/sdsl.dir/util.cpp.o.d -o CMakeFiles/sdsl.dir/util.cpp.o -c /<>/deps/sdsl-lite/lib/util.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/wt_helper.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/wt_helper.cpp.o -MF CMakeFiles/sdsl.dir/wt_helper.cpp.o.d -o CMakeFiles/sdsl.dir/wt_helper.cpp.o -c /<>/deps/sdsl-lite/lib/wt_helper.cpp [100%] Linking CXX static library libsdsl.a cd /<>/deps/sdsl-lite/build/lib && /usr/bin/cmake -P CMakeFiles/sdsl.dir/cmake_clean_target.cmake cd /<>/deps/sdsl-lite/build/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/sdsl.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libsdsl.a CMakeFiles/sdsl.dir/bits.cpp.o CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o CMakeFiles/sdsl.dir/config.cpp.o CMakeFiles/sdsl.dir/construct_config.cpp.o CMakeFiles/sdsl.dir/construct_isa.cpp.o CMakeFiles/sdsl.dir/construct_lcp.cpp.o CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o CMakeFiles/sdsl.dir/construct_sa.cpp.o CMakeFiles/sdsl.dir/construct_sa_se.cpp.o CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o CMakeFiles/sdsl.dir/io.cpp.o CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o CMakeFiles/sdsl.dir/louds_tree.cpp.o CMakeFiles/sdsl.dir/memory_management.cpp.o CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o CMakeFiles/sdsl.dir/ram_filebuf.cpp.o CMakeFiles/sdsl.dir/ram_fs.cpp.o CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o CMakeFiles/sdsl.dir/sd_vector.cpp.o CMakeFiles/sdsl.dir/sfstream.cpp.o CMakeFiles/sdsl.dir/simple_sds.cpp.o CMakeFiles/sdsl.dir/structure_tree.cpp.o CMakeFiles/sdsl.dir/uint128_t.cpp.o CMakeFiles/sdsl.dir/uint256_t.cpp.o CMakeFiles/sdsl.dir/util.cpp.o CMakeFiles/sdsl.dir/wt_helper.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libsdsl.a make[6]: Leaving directory '/<>/deps/sdsl-lite/build' [100%] Built target sdsl make[5]: Leaving directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make[4]: Leaving directory '/<>/deps/sdsl-lite/build' make[3]: Leaving directory '/<>/deps/sdsl-lite/build' Removing old files rm -rf '/<>/include/sdsl/*' rm -f '/<>/lib/libsdsl*' make[3]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles /<>/deps/sdsl-lite/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/depend make[5]: Entering directory '/<>/deps/sdsl-lite/build' cd /<>/deps/sdsl-lite/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/sdsl-lite /<>/deps/sdsl-lite/lib /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build/lib /<>/deps/sdsl-lite/build/lib/CMakeFiles/sdsl.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/build make[5]: Entering directory '/<>/deps/sdsl-lite/build' make[5]: Nothing to be done for 'lib/CMakeFiles/sdsl.dir/build'. make[5]: Leaving directory '/<>/deps/sdsl-lite/build' [100%] Built target sdsl make[4]: Leaving directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/sdsl-lite/build' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/sdsl-lite/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<>/lib/pkgconfig/sdsl-lite.pc -- Installing: /<>/include/sdsl/bit_vector_il.hpp -- Installing: /<>/include/sdsl/bit_vectors.hpp -- Installing: /<>/include/sdsl/bits.hpp -- Installing: /<>/include/sdsl/bp_support.hpp -- Installing: /<>/include/sdsl/bp_support_algorithm.hpp -- Installing: /<>/include/sdsl/bp_support_g.hpp -- Installing: /<>/include/sdsl/bp_support_gg.hpp -- Installing: /<>/include/sdsl/bp_support_sada.hpp -- Installing: /<>/include/sdsl/coder.hpp -- Installing: /<>/include/sdsl/coder_comma.hpp -- Installing: /<>/include/sdsl/coder_elias_delta.hpp -- Installing: /<>/include/sdsl/coder_elias_gamma.hpp -- Installing: /<>/include/sdsl/coder_fibonacci.hpp -- Installing: /<>/include/sdsl/config.hpp -- Installing: /<>/include/sdsl/construct.hpp -- Installing: /<>/include/sdsl/construct_bwt.hpp -- Installing: /<>/include/sdsl/construct_config.hpp -- Installing: /<>/include/sdsl/construct_isa.hpp -- Installing: /<>/include/sdsl/construct_lcp.hpp -- Installing: /<>/include/sdsl/construct_lcp_helper.hpp -- Installing: /<>/include/sdsl/construct_sa.hpp -- Installing: /<>/include/sdsl/construct_sa_se.hpp -- Installing: /<>/include/sdsl/csa_alphabet_strategy.hpp -- Installing: /<>/include/sdsl/csa_bitcompressed.hpp -- Installing: /<>/include/sdsl/csa_sada.hpp -- Installing: /<>/include/sdsl/csa_sampling_strategy.hpp -- Installing: /<>/include/sdsl/csa_wt.hpp -- Installing: /<>/include/sdsl/cst_fully.hpp -- Installing: /<>/include/sdsl/cst_iterators.hpp -- Installing: /<>/include/sdsl/cst_sada.hpp -- Installing: /<>/include/sdsl/cst_sct3.hpp -- Installing: /<>/include/sdsl/dac_vector.hpp -- Installing: /<>/include/sdsl/enc_vector.hpp -- Installing: /<>/include/sdsl/fast_cache.hpp -- Installing: /<>/include/sdsl/hyb_vector.hpp -- Installing: /<>/include/sdsl/int_vector.hpp -- Installing: /<>/include/sdsl/int_vector_buffer.hpp -- Installing: /<>/include/sdsl/int_vector_io_wrappers.hpp -- Installing: /<>/include/sdsl/int_vector_mapper.hpp -- Installing: /<>/include/sdsl/inv_perm_support.hpp -- Installing: /<>/include/sdsl/io.hpp -- Installing: /<>/include/sdsl/iterators.hpp -- Installing: /<>/include/sdsl/k2_treap.hpp -- Installing: /<>/include/sdsl/k2_treap_algorithm.hpp -- Installing: /<>/include/sdsl/k2_treap_helper.hpp -- Installing: /<>/include/sdsl/k2_tree.hpp -- Installing: /<>/include/sdsl/k2_tree_helper.hpp -- Installing: /<>/include/sdsl/lcp.hpp -- Installing: /<>/include/sdsl/lcp_bitcompressed.hpp -- Installing: /<>/include/sdsl/lcp_byte.hpp -- Installing: /<>/include/sdsl/lcp_dac.hpp -- Installing: /<>/include/sdsl/lcp_support_sada.hpp -- Installing: /<>/include/sdsl/lcp_support_tree.hpp -- Installing: /<>/include/sdsl/lcp_support_tree2.hpp -- Installing: /<>/include/sdsl/lcp_vlc.hpp -- Installing: /<>/include/sdsl/lcp_wt.hpp -- Installing: /<>/include/sdsl/louds_tree.hpp -- Installing: /<>/include/sdsl/memory_management.hpp -- Installing: /<>/include/sdsl/nearest_neighbour_dictionary.hpp -- Installing: /<>/include/sdsl/nn_dict_dynamic.hpp -- Installing: /<>/include/sdsl/qsufsort.hpp -- Installing: /<>/include/sdsl/ram_filebuf.hpp -- Installing: /<>/include/sdsl/ram_fs.hpp -- Installing: /<>/include/sdsl/rank_support.hpp -- Installing: /<>/include/sdsl/rank_support_scan.hpp -- Installing: /<>/include/sdsl/rank_support_v.hpp -- Installing: /<>/include/sdsl/rank_support_v5.hpp -- Installing: /<>/include/sdsl/raster_img.hpp -- Installing: /<>/include/sdsl/rle_vector.hpp -- Installing: /<>/include/sdsl/rmq_succinct_sada.hpp -- Installing: /<>/include/sdsl/rmq_succinct_sct.hpp -- Installing: /<>/include/sdsl/rmq_support.hpp -- Installing: /<>/include/sdsl/rmq_support_sparse_table.hpp -- Installing: /<>/include/sdsl/rrr_helper.hpp -- Installing: /<>/include/sdsl/rrr_vector.hpp -- Installing: /<>/include/sdsl/rrr_vector_15.hpp -- Installing: /<>/include/sdsl/sd_vector.hpp -- Installing: /<>/include/sdsl/sdsl_concepts.hpp -- Installing: /<>/include/sdsl/select_support.hpp -- Installing: /<>/include/sdsl/select_support_mcl.hpp -- Installing: /<>/include/sdsl/select_support_scan.hpp -- Installing: /<>/include/sdsl/sfstream.hpp -- Installing: /<>/include/sdsl/simple_sds.hpp -- Installing: /<>/include/sdsl/sorted_int_stack.hpp -- Installing: /<>/include/sdsl/sorted_multi_stack_support.hpp -- Installing: /<>/include/sdsl/sorted_stack_support.hpp -- Installing: /<>/include/sdsl/structure_tree.hpp -- Installing: /<>/include/sdsl/suffix_array_algorithm.hpp -- Installing: /<>/include/sdsl/suffix_array_helper.hpp -- Installing: /<>/include/sdsl/suffix_arrays.hpp -- Installing: /<>/include/sdsl/suffix_tree_algorithm.hpp -- Installing: /<>/include/sdsl/suffix_tree_helper.hpp -- Installing: /<>/include/sdsl/suffix_trees.hpp -- Installing: /<>/include/sdsl/uint128_t.hpp -- Installing: /<>/include/sdsl/uint256_t.hpp -- Installing: /<>/include/sdsl/uintx_t.hpp -- Installing: /<>/include/sdsl/util.hpp -- Installing: /<>/include/sdsl/vectors.hpp -- Installing: /<>/include/sdsl/vlc_vector.hpp -- Installing: /<>/include/sdsl/wavelet_trees.hpp -- Installing: /<>/include/sdsl/wm_int.hpp -- Installing: /<>/include/sdsl/wt_algorithm.hpp -- Installing: /<>/include/sdsl/wt_ap.hpp -- Installing: /<>/include/sdsl/wt_blcd.hpp -- Installing: /<>/include/sdsl/wt_gmr.hpp -- Installing: /<>/include/sdsl/wt_helper.hpp -- Installing: /<>/include/sdsl/wt_huff.hpp -- Installing: /<>/include/sdsl/wt_hutu.hpp -- Installing: /<>/include/sdsl/wt_int.hpp -- Installing: /<>/include/sdsl/wt_pc.hpp -- Installing: /<>/include/sdsl/wt_rlmn.hpp -- Installing: /<>/lib/libsdsl.a make[3]: Leaving directory '/<>/deps/sdsl-lite/build' SUCCESS: sdsl was installed successfully! The sdsl include files are located in '/<>/include'. The library files are located in '/<>/lib'. Sample programs can be found in the examples-directory. Tests in the test-directory A cheat sheet in the extras/cheatsheet-directory. Have fun! Makefile:511: warning: pattern recipe did not update peer target 'lib/libdivsufsort64.a'. Makefile:511: warning: pattern recipe did not update peer target 'lib/libdivsufsort.a'. . ./source_me.sh && cd deps/ssw/src && make && ar rs /<>/lib/libssw.a ssw.o ssw_cpp.o && cp ssw_cpp.h ssw.h /<>/include make[3]: Entering directory '/<>/deps/ssw/src' x86_64-linux-gnu-gcc -c -o ssw.o ssw.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wall -pipe -O3 -I. x86_64-linux-gnu-gcc -o ssw_test ssw.o main.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wall -pipe -O3 -I. -lm -lz x86_64-linux-gnu-gcc -o example_c ssw.o example.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wall -pipe -O3 -I. -lm -lz x86_64-linux-gnu-g++ -c -o ssw_cpp.o ssw_cpp.cpp -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wall -pipe -O3 -I. cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ x86_64-linux-gnu-g++ -o example_cpp example.cpp ssw.o ssw_cpp.o -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wall -pipe -O3 -I. -lm -lz cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ x86_64-linux-gnu-gcc -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wall -pipe -O3 -I. -fPIC -shared -o libssw.so ssw.c make[3]: Leaving directory '/<>/deps/ssw/src' ar: creating /<>/lib/libssw.a . ./source_me.sh && cp -r deps/gcsa2/include/gcsa /<>/include/ && cd deps/gcsa2 && make directories && make lib/libgcsa2.a && mv lib/libgcsa2.a /<>/lib make[3]: Entering directory '/<>/deps/gcsa2' mkdir -p bin mkdir -p lib mkdir -p obj make[3]: Leaving directory '/<>/deps/gcsa2' make[3]: Entering directory '/<>/deps/gcsa2' /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/dbg.o src/dbg.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/files.o src/files.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gcsa.o src/gcsa.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/lcp.o src/lcp.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/path_graph.o src/path_graph.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/support.o src/support.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp ar rcs lib/libgcsa2.a obj/algorithms.o obj/dbg.o obj/files.o obj/gcsa.o obj/internal.o obj/lcp.o obj/path_graph.o obj/support.o obj/utils.o make[3]: Leaving directory '/<>/deps/gcsa2' . ./source_me.sh && cp -r deps/gbwt/include/gbwt /<>/include/ && cd deps/gbwt && make clean && make && mv lib/libgbwt.a /<>/lib make[3]: Entering directory '/<>/deps/gbwt' rm -rf bin lib obj rm -f *.o *.a build_gbwt build_ri merge_gbwt benchmark metadata_tool remove_seq cd tests && make clean make[4]: Entering directory '/<>/deps/gbwt/tests' rm -f test_bwtmerge test_metadata test_queries test_support test_variants *.o make[4]: Leaving directory '/<>/deps/gbwt/tests' make[3]: Leaving directory '/<>/deps/gbwt' make[3]: Entering directory '/<>/deps/gbwt' mkdir -p bin mkdir -p lib mkdir -p obj /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/bwtmerge.o src/bwtmerge.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/cached_gbwt.o src/cached_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/dynamic_gbwt.o src/dynamic_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/fast_locate.o src/fast_locate.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/files.o src/files.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbwt.o src/gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/metadata.o src/metadata.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/support.o src/support.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/test.o src/test.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/variants.o src/variants.cpp ar rcs lib/libgbwt.a obj/algorithms.o obj/bwtmerge.o obj/cached_gbwt.o obj/dynamic_gbwt.o obj/fast_locate.o obj/files.o obj/gbwt.o obj/internal.o obj/metadata.o obj/support.o obj/test.o obj/utils.o obj/variants.o /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/build_gbwt.o src/build_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/build_gbwt obj/build_gbwt.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/build_ri.o src/build_ri.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/build_ri obj/build_ri.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/merge_gbwt.o src/merge_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/merge_gbwt obj/merge_gbwt.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/benchmark.o src/benchmark.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/benchmark obj/benchmark.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/metadata_tool.o src/metadata_tool.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/metadata_tool obj/metadata_tool.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/remove_seq.o src/remove_seq.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/remove_seq obj/remove_seq.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 rm obj/build_ri.o obj/metadata_tool.o obj/benchmark.o obj/merge_gbwt.o obj/remove_seq.o obj/build_gbwt.o make[3]: Leaving directory '/<>/deps/gbwt' . ./source_me.sh && cd deps/libhandlegraph && rm -Rf build CMakeCache.txt CMakeFiles && mkdir build && cd build && CXXFLAGS="-std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2" cmake -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_PREFIX=/<> -DCMAKE_INSTALL_LIBDIR=lib .. && make && make install -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done libhandlegraph is root project or external_project -- Configuring done (1.5s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/libhandlegraph/build make[3]: Entering directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -S/<>/deps/libhandlegraph -B/<>/deps/libhandlegraph/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles /<>/deps/libhandlegraph/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_objs.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [ 2%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/deletable_handle_graph.cpp [ 5%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o -c /<>/deps/libhandlegraph/src/dfs.cpp [ 8%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/handle_graph.cpp [ 11%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/mutable_handle_graph.cpp [ 14%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o -c /<>/deps/libhandlegraph/src/path_metadata.cpp [ 17%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o -c /<>/deps/libhandlegraph/src/mutable_path_metadata.cpp [ 20%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/path_handle_graph.cpp [ 22%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/path_position_handle_graph.cpp [ 25%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/mutable_path_handle_graph.cpp [ 28%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/ranked_handle_graph.cpp [ 31%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o -c /<>/deps/libhandlegraph/src/serializable.cpp [ 34%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o -c /<>/deps/libhandlegraph/src/snarl_decomposition.cpp [ 37%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o -c /<>/deps/libhandlegraph/src/trivially_serializable.cpp [ 40%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/types.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/types.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/types.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o -c /<>/deps/libhandlegraph/src/types.cpp [ 42%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o -c /<>/deps/libhandlegraph/src/copy_graph.cpp [ 45%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o -c /<>/deps/libhandlegraph/src/append_graph.cpp [ 48%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o -c /<>/deps/libhandlegraph/src/are_equivalent.cpp [ 51%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o -c /<>/deps/libhandlegraph/src/find_tips.cpp [ 54%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o -c /<>/deps/libhandlegraph/src/topological_sort.cpp [ 57%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o -c /<>/deps/libhandlegraph/src/apply_orientations.cpp [ 60%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o -c /<>/deps/libhandlegraph/src/is_single_stranded.cpp [ 62%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o -c /<>/deps/libhandlegraph/src/count_walks.cpp [ 65%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o -c /<>/deps/libhandlegraph/src/eades_algorithm.cpp [ 68%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o -c /<>/deps/libhandlegraph/src/dagify.cpp In file included from /usr/x86_64-linux-gnu/include/c++/14/x86_64-linux-gnu/bits/c++allocator.h:33, from /usr/x86_64-linux-gnu/include/c++/14/bits/allocator.h:46, from /usr/x86_64-linux-gnu/include/c++/14/vector:63, from /<>/deps/libhandlegraph/src/dagify.cpp:8: In member function ‘void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = long int]’, inlined from ‘static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = long int]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/alloc_traits.h:550:23, inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:389:19, inlined from ‘std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:368:15, inlined from ‘std::vector<_Tp, _Alloc>::~vector() [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:738:7, inlined from ‘std::unordered_map handlegraph::algorithms::dagify(const handlegraph::HandleGraph*, handlegraph::MutableHandleGraph*, size_t)’ at /<>/deps/libhandlegraph/src/dagify.cpp:445:5: /usr/x86_64-linux-gnu/include/c++/14/bits/new_allocator.h:172:33: warning: ‘void operator delete(void*, std::size_t)’ called on pointer ‘’ with nonzero offset [1, 9223372036854775800] [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In member function ‘_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long int]’, inlined from ‘static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long int]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/alloc_traits.h:515:28, inlined from ‘std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:380:33, inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:398:44, inlined from ‘std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:334:26, inlined from ‘std::vector<_Tp, _Alloc>::vector(size_type, const value_type&, const allocator_type&) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:571:47, inlined from ‘std::unordered_map handlegraph::algorithms::dagify(const handlegraph::HandleGraph*, handlegraph::MutableHandleGraph*, size_t)’ at /<>/deps/libhandlegraph/src/dagify.cpp:327:85: /usr/x86_64-linux-gnu/include/c++/14/bits/new_allocator.h:151:55: note: returned from ‘void* operator new(std::size_t)’ 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ [ 71%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o -c /<>/deps/libhandlegraph/src/strongly_connected_components.cpp [ 74%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o -c /<>/deps/libhandlegraph/src/find_shortest_paths.cpp [ 77%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o -c /<>/deps/libhandlegraph/src/dijkstra.cpp [ 80%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o -c /<>/deps/libhandlegraph/src/is_acyclic.cpp [ 82%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o -c /<>/deps/libhandlegraph/src/reverse_complement.cpp [ 85%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o -c /<>/deps/libhandlegraph/src/split_strands.cpp [ 88%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o -c /<>/deps/libhandlegraph/src/chop.cpp [ 91%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o -c /<>/deps/libhandlegraph/src/weakly_connected_components.cpp [ 94%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o -c /<>/deps/libhandlegraph/src/extend.cpp make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 94%] Built target handlegraph_objs make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_shared.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [ 97%] Linking CXX shared library libhandlegraph.so /usr/bin/cmake -E cmake_link_script CMakeFiles/handlegraph_shared.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wl,--dependency-file=CMakeFiles/handlegraph_shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libhandlegraph.so -o libhandlegraph.so CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 97%] Built target handlegraph_shared make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [100%] Linking CXX static library libhandlegraph.a /usr/bin/cmake -P CMakeFiles/handlegraph_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/handlegraph_static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhandlegraph.a CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhandlegraph.a make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [100%] Built target handlegraph_static make[4]: Leaving directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles 0 make[3]: Leaving directory '/<>/deps/libhandlegraph/build' make[3]: Entering directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -S/<>/deps/libhandlegraph -B/<>/deps/libhandlegraph/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles /<>/deps/libhandlegraph/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_objs.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_objs.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 94%] Built target handlegraph_objs make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_shared.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_shared.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 97%] Built target handlegraph_shared make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_static.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [100%] Built target handlegraph_static make[4]: Leaving directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/libhandlegraph/build' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/libhandlegraph/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /<>/lib/libhandlegraph.so -- Installing: /<>/lib/libhandlegraph.a -- Up-to-date: /<>/include/handlegraph -- Up-to-date: /<>/include/handlegraph/serializable.hpp -- Up-to-date: /<>/include/handlegraph/util.hpp -- Up-to-date: /<>/include/handlegraph/types.hpp -- Up-to-date: /<>/include/handlegraph/trivially_serializable.hpp -- Up-to-date: /<>/include/handlegraph/snarl_decomposition.hpp -- Up-to-date: /<>/include/handlegraph/serializable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/path_position_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/path_metadata.hpp -- Up-to-date: /<>/include/handlegraph/path_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/named_node_back_translation.hpp -- Up-to-date: /<>/include/handlegraph/mutable_path_mutable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/mutable_path_metadata.hpp -- Up-to-date: /<>/include/handlegraph/mutable_path_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/mutable_path_deletable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/mutable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/iteratee.hpp -- Up-to-date: /<>/include/handlegraph/handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/expanding_overlay_graph.hpp -- Up-to-date: /<>/include/handlegraph/deletable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/buildable_snarl_decomposition.hpp -- Up-to-date: /<>/include/handlegraph/algorithms -- Up-to-date: /<>/include/handlegraph/algorithms/weakly_connected_components.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/topological_sort.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/strongly_connected_components.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/split_strands.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/reverse_complement.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/is_single_stranded.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/is_acyclic.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/internal -- Up-to-date: /<>/include/handlegraph/algorithms/internal/dfs.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/find_tips.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/find_shortest_paths.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/extend.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/eades_algorithm.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/dijkstra.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/dagify.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/count_walks.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/copy_graph.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/chop.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/are_equivalent.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/apply_orientations.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/append_graph.hpp -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphTargets.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphTargets-noconfig.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphConfig.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphConfigVersion.cmake make[3]: Leaving directory '/<>/deps/libhandlegraph/build' . ./source_me.sh && cp -r deps/gbwtgraph/include/gbwtgraph /<>/include/ && cd deps/gbwtgraph && make clean && make && mv lib/libgbwtgraph.a /<>/lib make[3]: Entering directory '/<>/deps/gbwtgraph' rm -rf bin lib obj rm -f *.o *.a gfa2gbwt cd tests && make clean make[4]: Entering directory '/<>/deps/gbwtgraph/tests' rm -f test_utils test_gbwtgraph test_cached_gbwtgraph test_gfa test_gbz test_minimizer test_index test_algorithms test_path_cover *.o make[4]: Leaving directory '/<>/deps/gbwtgraph/tests' make[3]: Leaving directory '/<>/deps/gbwtgraph' make[3]: Entering directory '/<>/deps/gbwtgraph' mkdir -p bin mkdir -p lib mkdir -p obj /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/cached_gbwtgraph.o src/cached_gbwtgraph.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbwtgraph.o src/gbwtgraph.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbz.o src/gbz.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gfa.o src/gfa.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/minimizer.o src/minimizer.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/path_cover.o src/path_cover.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp ar rcs lib/libgbwtgraph.a obj/algorithms.o obj/cached_gbwtgraph.o obj/gbwtgraph.o obj/gbz.o obj/gfa.o obj/internal.o obj/minimizer.o obj/path_cover.o obj/utils.o /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gfa2gbwt.o src/gfa2gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/gfa2gbwt obj/gfa2gbwt.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbz_stats.o src/gbz_stats.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/gbz_stats obj/gbz_stats.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/kmer_freq.o src/kmer_freq.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/kmer_freq obj/kmer_freq.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 rm obj/kmer_freq.o obj/gbz_stats.o obj/gfa2gbwt.o make[3]: Leaving directory '/<>/deps/gbwtgraph' . ./source_me.sh && cd deps/kff-cpp-api && rm -Rf build && mkdir build && cd build && cmake .. && make && cp kff_io.hpp /<>/include && mv libkff.a /<>/lib -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.5s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/kff-cpp-api/build make[3]: Entering directory '/<>/deps/kff-cpp-api/build' [ 16%] Building CXX object CMakeFiles/kff.dir/kff_io.cpp.o [ 33%] Linking CXX static library libkff.a [ 33%] Built target kff [ 50%] Building CXX object CMakeFiles/kff_example.dir/main.cpp.o [ 66%] Linking CXX executable kff_example [ 66%] Built target kff_example [ 83%] Building CXX object benchmarks/CMakeFiles/reader_bench.dir/reader.cpp.o [100%] Linking CXX executable reader_bench [100%] Built target reader_bench make[3]: Leaving directory '/<>/deps/kff-cpp-api/build' . ./source_me.sh && cd deps/gssw && make && cp lib/libgssw.a /<>/lib/ && cp src/gssw.h /<>/include/ make[3]: Entering directory '/<>/deps/gssw' x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wall -O3 -g -c -o obj/gssw.o src/gssw.c src/gssw.c: In function ‘gssw_graph_print’: src/gssw.c:1947:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1947 | fprintf(stdout, "GRAPH // node %llu %u %s\n", n->id, n->len, n->seq); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c:1951:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1951 | fprintf(stdout, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c:1951:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1951 | fprintf(stdout, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c: In function ‘gssw_graph_print_stderr’: src/gssw.c:1963:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1963 | fprintf(stderr, "GRAPH // node %llu %u %s\n", n->id, n->len, n->seq); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c:1967:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1967 | fprintf(stderr, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c:1967:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1967 | fprintf(stderr, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c: In function ‘gssw_graph_print_score_matrices’: src/gssw.c:1978:31: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1978 | fprintf(out, "node %llu\n", n->id); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_print_graph_cigar’: src/gssw.c:3623:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 3623 | fprintf(out, "%llu[", nc->node->id); | ~~~^ ~~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_create_seed_byte’: src/gssw.c:5095:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 5095 | fprintf(stderr, "failing is node %llu\n", prev[k]->id); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_create_seed_word’: src/gssw.c:5130:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 5130 | fprintf(stderr, "failing is node %llu\n", prev[k]->id); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_sw_software_byte’: src/gssw.c:277:5: warning: ‘__builtin_memcpy’ writing between 18446744071562067984 and 18446744073709551600 bytes into a region of size 9223372036854775807 [-Wstringop-overflow=] 277 | memcpy(scratch, to_unswizzle, size); | ^ In function ‘unswizzle_byte’, inlined from ‘gssw_sw_software_byte’ at src/gssw.c:405:9: src/gssw.c:271:35: note: destination object of size 9223372036854775807 allocated by ‘malloc’ 271 | uint8_t* scratch = (uint8_t*) malloc(size * sizeof(uint8_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/gssw.c: In function ‘gssw_sw_software_word’: src/gssw.c:1117:5: warning: ‘__builtin_memcpy’ writing between 18446744069414584336 and 18446744073709551600 bytes into a region of size 9223372036854775807 [-Wstringop-overflow=] 1117 | memcpy(scratch, to_unswizzle, size * sizeof(int16_t)); | ^ In function ‘unswizzle_word’, inlined from ‘gssw_sw_software_word’ at src/gssw.c:1249:9: src/gssw.c:1111:35: note: destination object of size 9223372036854775807 allocated by ‘malloc’ 1111 | int16_t* scratch = (int16_t*) malloc(size * sizeof(int16_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/gssw.c: In function ‘gssw_node_create’: src/gssw.c:4975:5: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 4975 | strncpy(n->seq, seq, len); n->seq[len] = 0; | ^ src/gssw.c:4971:19: note: length computed here 4971 | int32_t len = strlen(seq); | ^~~~~~~~~~~ # Make dest directory x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wall -O3 -g src/example.c -o bin/gssw_example obj/gssw.o -lm -lz x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wall -O3 -g src/example_adj.c -o bin/gssw_example_adj obj/gssw.o -lm -lz x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wall -O3 -g src/gssw_test.c -o bin/gssw_test obj/gssw.o -lm -lz ar rvs lib/libgssw.a obj/gssw.o ar: creating lib/libgssw.a a - obj/gssw.o make[3]: Leaving directory '/<>/deps/gssw' . ./source_me.sh && cd ./deps/sonLib && kyotoTycoonLib="" make && cp lib/sonLib.a /<>/lib/libsonlib.a && mkdir -p /<>/include/sonLib && cp lib/*.h /<>/include/sonLib make[3]: Entering directory '/<>/deps/sonLib' cd externalTools && make all make[4]: Entering directory '/<>/deps/sonLib/externalTools' cd cutest && make all make[5]: Entering directory '/<>/deps/sonLib/externalTools/cutest' x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -c CuTest.c ar rc cuTest.a *.o ranlib cuTest.a rm -f *.o mv cuTest.a ../../lib/ cp CuTest.h ../../lib/ make[5]: Leaving directory '/<>/deps/sonLib/externalTools/cutest' cd quicktree_1.1 && make all CC="x86_64-linux-gnu-gcc -std=c99" make[5]: Entering directory '/<>/deps/sonLib/externalTools/quicktree_1.1' x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/align.o ./src/align.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/cluster.o ./src/cluster.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/distancemat.o ./src/distancemat.c ./src/distancemat.c: In function ‘read_phylip_DistanceMatrix’: ./src/distancemat.c:390:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 390 | fscanf( handle, "%s", identifier ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/distancemat.c:397:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 397 | fscanf( handle, "%lf", &dist); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/options.o ./src/options.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/util.o ./src/util.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/sequence.o ./src/sequence.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/quicktree.o ./src/quicktree.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/buildtree.o ./src/buildtree.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/tree.o ./src/tree.c ./src/tree.c: In function ‘read_newhampshire_Tnode’: ./src/tree.c:393:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 393 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:406:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 406 | fscanf( handle, "%1s", &c); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:417:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 417 | fscanf( handle, "%1s", &c); /* should be ) */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:420:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 420 | fscanf( handle, "%1s", &c); /* should be : */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c: In function ‘read_newhampshire_Tree’: ./src/tree.c:468:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 468 | fscanf( handle, "("); | ^~~~~~~~~~~~~~~~~~~~ ./src/tree.c:475:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 475 | fscanf( handle, "%1s", &c ); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:484:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 484 | fscanf( handle, "%1s", &c ); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:493:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 493 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:496:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 496 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -g -o bin/quicktree ./obj/align.o ./obj/cluster.o ./obj/distancemat.o ./obj/options.o ./obj/util.o ./obj/sequence.o ./obj/quicktree.o ./obj/buildtree.o ./obj/tree.o -lm make[5]: Leaving directory '/<>/deps/sonLib/externalTools/quicktree_1.1' make[4]: Leaving directory '/<>/deps/sonLib/externalTools' cd C && make all make[4]: Entering directory '/<>/deps/sonLib/C' cp inc/avl.h ../lib/avl.h.tmp mv ../lib/avl.h.tmp ../lib/avl.h cp inc/bioioC.h ../lib/bioioC.h.tmp mv ../lib/bioioC.h.tmp ../lib/bioioC.h cp inc/commonC.h ../lib/commonC.h.tmp mv ../lib/commonC.h.tmp ../lib/commonC.h cp inc/fastCMaths.h ../lib/fastCMaths.h.tmp mv ../lib/fastCMaths.h.tmp ../lib/fastCMaths.h cp inc/hashTableC.h ../lib/hashTableC.h.tmp mv ../lib/hashTableC.h.tmp ../lib/hashTableC.h cp inc/hashTableC_itr.h ../lib/hashTableC_itr.h.tmp mv ../lib/hashTableC_itr.h.tmp ../lib/hashTableC_itr.h cp inc/hashTablePrivateC.h ../lib/hashTablePrivateC.h.tmp mv ../lib/hashTablePrivateC.h.tmp ../lib/hashTablePrivateC.h cp inc/jsmn.h ../lib/jsmn.h.tmp mv ../lib/jsmn.h.tmp ../lib/jsmn.h cp inc/pairwiseAlignment.h ../lib/pairwiseAlignment.h.tmp mv ../lib/pairwiseAlignment.h.tmp ../lib/pairwiseAlignment.h cp inc/sonLib.h ../lib/sonLib.h.tmp mv ../lib/sonLib.h.tmp ../lib/sonLib.h cp inc/sonLibAlign.h ../lib/sonLibAlign.h.tmp mv ../lib/sonLibAlign.h.tmp ../lib/sonLibAlign.h cp inc/sonLibCache.h ../lib/sonLibCache.h.tmp mv ../lib/sonLibCache.h.tmp ../lib/sonLibCache.h cp inc/sonLibCommon.h ../lib/sonLibCommon.h.tmp mv ../lib/sonLibCommon.h.tmp ../lib/sonLibCommon.h cp inc/sonLibCompression.h ../lib/sonLibCompression.h.tmp mv ../lib/sonLibCompression.h.tmp ../lib/sonLibCompression.h cp inc/sonLibConnectivity.h ../lib/sonLibConnectivity.h.tmp mv ../lib/sonLibConnectivity.h.tmp ../lib/sonLibConnectivity.h cp inc/sonLibEulerTour.h ../lib/sonLibEulerTour.h.tmp mv ../lib/sonLibEulerTour.h.tmp ../lib/sonLibEulerTour.h cp inc/sonLibExcept.h ../lib/sonLibExcept.h.tmp mv ../lib/sonLibExcept.h.tmp ../lib/sonLibExcept.h cp inc/sonLibFile.h ../lib/sonLibFile.h.tmp mv ../lib/sonLibFile.h.tmp ../lib/sonLibFile.h cp inc/sonLibHash.h ../lib/sonLibHash.h.tmp mv ../lib/sonLibHash.h.tmp ../lib/sonLibHash.h cp inc/sonLibKVDatabase.h ../lib/sonLibKVDatabase.h.tmp mv ../lib/sonLibKVDatabase.h.tmp ../lib/sonLibKVDatabase.h cp inc/sonLibKVDatabaseConf.h ../lib/sonLibKVDatabaseConf.h.tmp mv ../lib/sonLibKVDatabaseConf.h.tmp ../lib/sonLibKVDatabaseConf.h cp inc/sonLibList.h ../lib/sonLibList.h.tmp mv ../lib/sonLibList.h.tmp ../lib/sonLibList.h cp inc/sonLibMath.h ../lib/sonLibMath.h.tmp mv ../lib/sonLibMath.h.tmp ../lib/sonLibMath.h cp inc/sonLibNaiveConnectivity.h ../lib/sonLibNaiveConnectivity.h.tmp mv ../lib/sonLibNaiveConnectivity.h.tmp ../lib/sonLibNaiveConnectivity.h cp inc/sonLibRandom.h ../lib/sonLibRandom.h.tmp mv ../lib/sonLibRandom.h.tmp ../lib/sonLibRandom.h cp inc/sonLibSet.h ../lib/sonLibSet.h.tmp mv ../lib/sonLibSet.h.tmp ../lib/sonLibSet.h cp inc/sonLibSortedSet.h ../lib/sonLibSortedSet.h.tmp mv ../lib/sonLibSortedSet.h.tmp ../lib/sonLibSortedSet.h cp inc/sonLibString.h ../lib/sonLibString.h.tmp mv ../lib/sonLibString.h.tmp ../lib/sonLibString.h cp inc/sonLibTreap.h ../lib/sonLibTreap.h.tmp mv ../lib/sonLibTreap.h.tmp ../lib/sonLibTreap.h cp inc/sonLibTree.h ../lib/sonLibTree.h.tmp mv ../lib/sonLibTree.h.tmp ../lib/sonLibTree.h cp inc/sonLibTuples.h ../lib/sonLibTuples.h.tmp mv ../lib/sonLibTuples.h.tmp ../lib/sonLibTuples.h cp inc/sonLibTypes.h ../lib/sonLibTypes.h.tmp mv ../lib/sonLibTypes.h.tmp ../lib/sonLibTypes.h cp inc/stGraph.h ../lib/stGraph.h.tmp mv ../lib/stGraph.h.tmp ../lib/stGraph.h cp inc/stJson.h ../lib/stJson.h.tmp mv ../lib/stJson.h.tmp ../lib/stJson.h cp inc/stMatrix.h ../lib/stMatrix.h.tmp mv ../lib/stMatrix.h.tmp ../lib/stMatrix.h cp inc/stPhylogeny.h ../lib/stPhylogeny.h.tmp mv ../lib/stPhylogeny.h.tmp ../lib/stPhylogeny.h cp inc/stPosetAlignment.h ../lib/stPosetAlignment.h.tmp mv ../lib/stPosetAlignment.h.tmp ../lib/stPosetAlignment.h cp inc/stSafeC.h ../lib/stSafeC.h.tmp mv ../lib/stSafeC.h.tmp ../lib/stSafeC.h cp inc/stSpimapLayer.h ../lib/stSpimapLayer.h.tmp mv ../lib/stSpimapLayer.h.tmp ../lib/stSpimapLayer.h cp inc/stThreadPool.h ../lib/stThreadPool.h.tmp mv ../lib/stThreadPool.h.tmp ../lib/stThreadPool.h cp inc/stUnionFind.h ../lib/stUnionFind.h.tmp mv ../lib/stUnionFind.h.tmp ../lib/stUnionFind.h x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -I inc -I ../lib/ -c impl/*.c cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/bioioC.c: In function ‘parseInt’: impl/bioioC.c:265:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 265 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:265:15: note: did you mean to dereference the pointer? 265 | while(*string != '\0' && !isspace(**string)) { | ^ impl/bioioC.c: In function ‘parseFloat’: impl/bioioC.c:286:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 286 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:286:15: note: did you mean to dereference the pointer? 286 | while(*string != '\0' && !isspace(**string)) { | ^ impl/bioioC.c: In function ‘parseString’: impl/bioioC.c:307:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 307 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:307:15: note: did you mean to dereference the pointer? 307 | while(*string != '\0' && !isspace(**string)) { | ^ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibCompression.c: In function ‘stCompression_compress’: impl/sonLibCompression.c:37:9: warning: ‘LZ4_compress’ is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] 37 | int64_t bytesWritten = LZ4_compress(((char*)data) + inputOffset, buffer+(outputOffset+1), subChunk ? ST_LZ4_CHUNK_SIZE : sizeInBytes - inputOffset); | ^~~~~~~ In file included from /usr/include/lz4hc.h:43, from impl/sonLibCompression.c:15: /usr/include/lz4.h:806:75: note: declared here 806 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize); | ^~~~~~~~~~~~ impl/sonLibCompression.c: In function ‘stCompression_decompress’: impl/sonLibCompression.c:60:13: warning: ‘LZ4_uncompress’ is deprecated: use LZ4_decompress_fast() instead [-Wdeprecated-declarations] 60 | int64_t bytesRead = LZ4_uncompress(((char *)compressedData)+inputOffset, | ^~~~~~~ /usr/include/lz4.h:814:68: note: declared here 814 | LZ4_DEPRECATED("use LZ4_decompress_fast() instead") LZ4LIB_API int LZ4_uncompress (const char* source, char* dest, int outputSize); | ^~~~~~~~~~~~~~ impl/sonLibCompression.c:72:17: warning: ‘LZ4_uncompress_unknownOutputSize’ is deprecated: use LZ4_decompress_safe() instead [-Wdeprecated-declarations] 72 | int64_t bytesWritten = LZ4_uncompress_unknownOutputSize(((char *)compressedData)+inputOffset, | ^~~~~~~ /usr/include/lz4.h:815:68: note: declared here 815 | LZ4_DEPRECATED("use LZ4_decompress_safe() instead") LZ4LIB_API int LZ4_uncompress_unknownOutputSize (const char* source, char* dest, int isize, int maxOutputSize); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibConnectivity.c: In function ‘stConnectivity_addEdge’: impl/sonLibConnectivity.c:248:33: warning: pointer ‘component1’ may be used after ‘free’ [-Wuse-after-free] 248 | connectivity->mergeCallback(connectivity->mergeExtraData, component1, component2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘stConnectedComponent_destruct’, inlined from ‘stConnectivity_addEdge’ at impl/sonLibConnectivity.c:238:3: impl/sonLibConnectivity.c:608:9: note: call to ‘free’ here 608 | free(comp); | ^~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibTreap.c: In function ‘stTreap_remove’: impl/sonLibTreap.c:331:18: warning: pointer ‘rmnode’ used after ‘free’ [-Wuse-after-free] 331 | stTreap *p = rmnode->parent; | ^ impl/sonLibTreap.c:329:9: note: call to ‘free’ here 329 | free(rmnode); | ^~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C x86_64-linux-gnu-g++ -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall -funroll-loops -DNDEBUG -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wl,-z,relro -Wl,-z,now -I inc -I ../lib/ -c impl/*.cpp ar rc sonLib.a *.o ../externalTools/quicktree_1.1/obj/buildtree.o ../externalTools/quicktree_1.1/obj/cluster.o ../externalTools/quicktree_1.1/obj/distancemat.o ../externalTools/quicktree_1.1/obj/options.o ../externalTools/quicktree_1.1/obj/sequence.o ../externalTools/quicktree_1.1/obj/tree.o ../externalTools/quicktree_1.1/obj/util.o ranlib sonLib.a rm *.o mv sonLib.a ../lib/ x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -I inc -I ../lib -o ../bin/sonLibTests.tmp tests/allTests.c tests/sonLib*.c tests/st* ../lib/sonLib.a ../lib/cuTest.a -lz -lm -lm -lstdc++ -lpthread -llz4 mv ../bin/sonLibTests.tmp ../bin/sonLibTests x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -I inc -I ../lib -I tests -o ../bin/sonLib_kvDatabaseTest.tmp tests/kvDatabaseTest.c tests/kvDatabaseTestCommon.c ../lib/sonLib.a ../lib/cuTest.a -lz -lm -lm mv ../bin/sonLib_kvDatabaseTest.tmp ../bin/sonLib_kvDatabaseTest x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -I inc -I ../lib -o ../bin/sonLib_cigarTest.tmp tests/cigarsTest.c ../lib/sonLib.a -lm mv ../bin/sonLib_cigarTest.tmp ../bin/sonLib_cigarTest x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -I inc -I ../lib -o ../bin/sonLib_fastaCTest.tmp tests/fastaCTest.c ../lib/sonLib.a -lm mv ../bin/sonLib_fastaCTest.tmp ../bin/sonLib_fastaCTest make[4]: Leaving directory '/<>/deps/sonLib/C' cp sonLib_daemonize.py ./bin/sonLib_daemonize.py chmod +x ./bin/sonLib_daemonize.py make[3]: Leaving directory '/<>/deps/sonLib' . ./source_me.sh && cd ./deps/pinchesAndCacti && make && cd /<>/./deps/sonLib && cp lib/stPinchesAndCacti.a /<>/lib/libpinchesandcacti.a && cp lib/3EdgeConnected.a /<>/lib/lib3edgeconnected.a && mkdir -p /<>/include/sonLib && cp lib/*.h /<>/include/sonLib make[3]: Entering directory '/<>/deps/pinchesAndCacti' cd externalTools && make all make[4]: Entering directory '/<>/deps/pinchesAndCacti/externalTools' cd threeEdgeConnected && make all make[5]: Entering directory '/<>/deps/pinchesAndCacti/externalTools/threeEdgeConnected' x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I ../..//../sonLib/lib/ -c impl/*.c ar rc 3EdgeConnected.a *.o ranlib 3EdgeConnected.a rm *.o mv 3EdgeConnected.a ../..//../sonLib/lib/ cp inc/*.h ../..//../sonLib/lib/ x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -I inc -I../..//../sonLib/lib -o ../..//../sonLib/bin/3EdgeTests tests/*.c ../..//../sonLib/lib/3EdgeConnected.a ../..//../sonLib/lib/sonLib.a ../..//../sonLib/lib/cuTest.a -lz -lm make[5]: Leaving directory '/<>/deps/pinchesAndCacti/externalTools/threeEdgeConnected' make[4]: Leaving directory '/<>/deps/pinchesAndCacti/externalTools' x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -I inc -I .//../sonLib/lib/ -c impl/*.c ar rc stPinchesAndCacti.a *.o ranlib stPinchesAndCacti.a rm *.o mv stPinchesAndCacti.a .//../sonLib/lib/ cp inc/*.h .//../sonLib/lib/ x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -Wl,-z,relro -Wl,-z,now -I inc -I impl -I.//../sonLib/lib -o .//../sonLib/bin/stPinchesAndCactiTests tests/*.c impl/*.c .//../sonLib/lib/sonLib.a .//../sonLib/lib/cuTest.a -lz -lm .//../sonLib/lib/3EdgeConnected.a make[3]: Leaving directory '/<>/deps/pinchesAndCacti' . ./source_me.sh && cd deps/sublinear-Li-Stephens && make clean && INCLUDE_FLAGS="-I/<>/include" make libs && cp lib/libsublinearLS.a /<>/lib/ && mkdir -p /<>/include/sublinearLS && cp src/*.hpp /<>/include/sublinearLS/ make[3]: Entering directory '/<>/deps/sublinear-Li-Stephens' rm -f /<>/deps/sublinear-Li-Stephens/bin/* /<>/deps/sublinear-Li-Stephens/obj/*.o /<>/deps/sublinear-Li-Stephens/obj/test/*.o /<>/deps/sublinear-Li-Stephens/lib/* make[3]: Leaving directory '/<>/deps/sublinear-Li-Stephens' make[3]: Entering directory '/<>/deps/sublinear-Li-Stephens' if [ ! -d /<>/deps/sublinear-Li-Stephens/obj ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/obj; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/obj/test ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/obj/test; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/bin ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/bin; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/lib ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/lib; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/deps ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/deps; fi x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/math.cpp -o /<>/deps/sublinear-Li-Stephens/obj/math.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/reference.cpp -o /<>/deps/sublinear-Li-Stephens/obj/reference.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/probability.cpp -o /<>/deps/sublinear-Li-Stephens/obj/probability.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/input_haplotype.cpp -o /<>/deps/sublinear-Li-Stephens/obj/input_haplotype.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/delay_multiplier.cpp -o /<>/deps/sublinear-Li-Stephens/obj/delay_multiplier.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/DP_map.cpp -o /<>/deps/sublinear-Li-Stephens/obj/DP_map.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/penalty_set.cpp -o /<>/deps/sublinear-Li-Stephens/obj/penalty_set.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++11 -g -Wno-error=return-type -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/allele.cpp -o /<>/deps/sublinear-Li-Stephens/obj/allele.o /<>/deps/sublinear-Li-Stephens/src/allele.cpp: In function ‘char allele::to_char(alleleValue)’: /<>/deps/sublinear-Li-Stephens/src/allele.cpp:20:1: warning: control reaches end of non-void function [-Wreturn-type] 20 | } | ^ x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/row_set.cpp -o /<>/deps/sublinear-Li-Stephens/obj/row_set.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++11 -g -Wno-error=return-type -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_node.o /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp: In member function ‘size_t haplotypeStateNode::node_to_child_index(const haplotypeStateNode*) const’: /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp:96:1: warning: control reaches end of non-void function [-Wreturn-type] 96 | } | ^ x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_state_tree.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_tree.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_manager.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_manager.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/set_of_extensions.cpp -o /<>/deps/sublinear-Li-Stephens/obj/set_of_extensions.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/reference_sequence.cpp -o /<>/deps/sublinear-Li-Stephens/obj/reference_sequence.o ar rc /<>/deps/sublinear-Li-Stephens/lib/libsublinearLS.a /<>/deps/sublinear-Li-Stephens/obj/math.o /<>/deps/sublinear-Li-Stephens/obj/reference.o /<>/deps/sublinear-Li-Stephens/obj/probability.o /<>/deps/sublinear-Li-Stephens/obj/input_haplotype.o /<>/deps/sublinear-Li-Stephens/obj/delay_multiplier.o /<>/deps/sublinear-Li-Stephens/obj/DP_map.o /<>/deps/sublinear-Li-Stephens/obj/penalty_set.o /<>/deps/sublinear-Li-Stephens/obj/allele.o /<>/deps/sublinear-Li-Stephens/obj/row_set.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_node.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_tree.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_manager.o /<>/deps/sublinear-Li-Stephens/obj/set_of_extensions.o /<>/deps/sublinear-Li-Stephens/obj/reference_sequence.o ranlib /<>/deps/sublinear-Li-Stephens/lib/libsublinearLS.a make[3]: Leaving directory '/<>/deps/sublinear-Li-Stephens' . ./source_me.sh && cd deps/structures && make clean && make lib/libstructures.a && cp lib/libstructures.a /<>/lib/ && cp -r src/include/structures /<>/include/ make[3]: Entering directory '/<>/deps/structures' if [ ! -d bin ]; then mkdir -p bin; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -d lib ]; then mkdir -p lib; fi find bin obj lib -type f -delete make[3]: Leaving directory '/<>/deps/structures' make[3]: Entering directory '/<>/deps/structures' if [ ! -d bin ]; then mkdir -p bin; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -d lib ]; then mkdir -p lib; fi x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -c src/union_find.cpp -o obj/union_find.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -c src/suffix_tree.cpp -o obj/suffix_tree.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -c src/stable_double.cpp -o obj/stable_double.o rm -f lib/libstructures.a ar rs lib/libstructures.a obj/union_find.o obj/suffix_tree.o obj/stable_double.o ar: creating lib/libstructures.a make[3]: Leaving directory '/<>/deps/structures' rm -f lib/cleaned_old_protobuf* rm -f lib/libproto* lib/pkgconfig/protobuf* bin/protoc rm -Rf include/google/protobuf deps/protobuf touch lib/cleaned_old_protobuf_v003 rm -f /<>/include/vg.pb.h /<>/include/vg/vg.pb.h rm -Rf /<>/include/vg/io/ . ./source_me.sh && export CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp" && export LDFLAGS="-Wl,-z,relro -Wl,-z,now -L/<>/lib" && cd deps/libvgio && rm -Rf CMakeCache.txt CMakeFiles *.cmake install_manifest.txt *.pb.cc *.pb.h *.a && rm -rf build-vg && mkdir build-vg && cd build-vg && PKG_CONFIG_PATH=/<>/lib/pkgconfig: cmake -DCMAKE_CXX_STANDARD=14 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_PREFIX_PATH="/usr;/" -DCMAKE_INSTALL_PREFIX=/<> -DCMAKE_INSTALL_LIBDIR=lib .. && make clean && VERBOSE=1 make && make install -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") Building libvgio for C++ 14 -- Found PkgConfig: /usr/bin/x86_64-linux-gnu-pkg-config (found version "1.8.1") -- Could NOT find Protobuf (missing: Protobuf_DIR) No installed Protobuf has registered itself with CMake. -- Found Protobuf: /usr/lib/x86_64-linux-gnu/libprotobuf.so (found version "3.21.12") Found Protobuf using FindProtobuf.cmake -- Found Threads: TRUE Using real Threads library -- Checking for module 'htslib' -- Found htslib, version 1.21 -- Checking for module 'jansson' -- Found jansson, version 2.14 Using installed libhandlegraph -- Configuring done (2.6s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/libvgio/build-vg make[3]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/Makefile2 clean make[4]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/link_target.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/vgio.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/vgio_static.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/test_libvgio.dir/build.make CMakeFiles/test_libvgio.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/test_libvgio.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make[4]: Leaving directory '/<>/deps/libvgio/build-vg' make[3]: Leaving directory '/<>/deps/libvgio/build-vg' make[3]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -S/<>/deps/libvgio -B/<>/deps/libvgio/build-vg --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles /<>/deps/libvgio/build-vg//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/link_target.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E create_symlink . vg make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 0%] Built target link_target make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 2%] Running cpp protocol buffer compiler on deps/vg.proto /usr/bin/protoc --cpp_out :/<>/deps/libvgio/build-vg -I /<>/deps/libvgio/deps /<>/deps/libvgio/deps/vg.proto cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 5%] Building CXX object CMakeFiles/vgio.dir/vg.pb.cc.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/vg.pb.cc.o -MF CMakeFiles/vgio.dir/vg.pb.cc.o.d -o CMakeFiles/vgio.dir/vg.pb.cc.o -c /<>/deps/libvgio/build-vg/vg.pb.cc [ 8%] Building CXX object CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o -MF CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o.d -o CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o -c /<>/deps/libvgio/src/alignment_emitter.cpp [ 11%] Building CXX object CMakeFiles/vgio.dir/src/alignment_io.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/alignment_io.cpp.o -MF CMakeFiles/vgio.dir/src/alignment_io.cpp.o.d -o CMakeFiles/vgio.dir/src/alignment_io.cpp.o -c /<>/deps/libvgio/src/alignment_io.cpp [ 14%] Building CXX object CMakeFiles/vgio.dir/src/basic_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/basic_stream.cpp.o -MF CMakeFiles/vgio.dir/src/basic_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/basic_stream.cpp.o -c /<>/deps/libvgio/src/basic_stream.cpp [ 17%] Building CXX object CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o -MF CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_input_stream.cpp [ 20%] Building CXX object CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o -MF CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_output_stream.cpp [ 23%] Building CXX object CMakeFiles/vgio.dir/src/edit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/edit.cpp.o -MF CMakeFiles/vgio.dir/src/edit.cpp.o.d -o CMakeFiles/vgio.dir/src/edit.cpp.o -c /<>/deps/libvgio/src/edit.cpp [ 26%] Building CXX object CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o -MF CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o.d -o CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o -c /<>/deps/libvgio/src/hfile_cppstream.cpp [ 29%] Building CXX object CMakeFiles/vgio.dir/src/json2pb.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/json2pb.cpp.o -MF CMakeFiles/vgio.dir/src/json2pb.cpp.o.d -o CMakeFiles/vgio.dir/src/json2pb.cpp.o -c /<>/deps/libvgio/src/json2pb.cpp [ 32%] Building CXX object CMakeFiles/vgio.dir/src/message_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/message_emitter.cpp.o -MF CMakeFiles/vgio.dir/src/message_emitter.cpp.o.d -o CMakeFiles/vgio.dir/src/message_emitter.cpp.o -c /<>/deps/libvgio/src/message_emitter.cpp [ 35%] Building CXX object CMakeFiles/vgio.dir/src/message_iterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/message_iterator.cpp.o -MF CMakeFiles/vgio.dir/src/message_iterator.cpp.o.d -o CMakeFiles/vgio.dir/src/message_iterator.cpp.o -c /<>/deps/libvgio/src/message_iterator.cpp [ 38%] Building CXX object CMakeFiles/vgio.dir/src/registry.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/registry.cpp.o -MF CMakeFiles/vgio.dir/src/registry.cpp.o.d -o CMakeFiles/vgio.dir/src/registry.cpp.o -c /<>/deps/libvgio/src/registry.cpp [ 41%] Building CXX object CMakeFiles/vgio.dir/src/stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/stream.cpp.o -MF CMakeFiles/vgio.dir/src/stream.cpp.o.d -o CMakeFiles/vgio.dir/src/stream.cpp.o -c /<>/deps/libvgio/src/stream.cpp [ 44%] Building CXX object CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o -MF CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o.d -o CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o -c /<>/deps/libvgio/src/stream_multiplexer.cpp [ 47%] Building CXX object CMakeFiles/vgio.dir/src/vpkg.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/vpkg.cpp.o -MF CMakeFiles/vgio.dir/src/vpkg.cpp.o.d -o CMakeFiles/vgio.dir/src/vpkg.cpp.o -c /<>/deps/libvgio/src/vpkg.cpp [ 50%] Linking CXX shared library libvgio.so /usr/bin/cmake -E cmake_link_script CMakeFiles/vgio.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -Wl,--dependency-file=CMakeFiles/vgio.dir/link.d -Wl,-z,relro -Wl,-z,now -L/<>/lib -shared -Wl,-soname,libvgio.so -o libvgio.so CMakeFiles/vgio.dir/vg.pb.cc.o CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o CMakeFiles/vgio.dir/src/alignment_io.cpp.o CMakeFiles/vgio.dir/src/basic_stream.cpp.o CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o CMakeFiles/vgio.dir/src/edit.cpp.o CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o CMakeFiles/vgio.dir/src/json2pb.cpp.o CMakeFiles/vgio.dir/src/message_emitter.cpp.o CMakeFiles/vgio.dir/src/message_iterator.cpp.o CMakeFiles/vgio.dir/src/registry.cpp.o CMakeFiles/vgio.dir/src/stream.cpp.o CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o CMakeFiles/vgio.dir/src/vpkg.cpp.o /usr/lib/x86_64-linux-gnu/libprotobuf.so -lhts -ljansson /<>/lib/libhandlegraph.so make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 50%] Built target vgio make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 52%] Building CXX object CMakeFiles/vgio_static.dir/vg.pb.cc.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/vg.pb.cc.o -MF CMakeFiles/vgio_static.dir/vg.pb.cc.o.d -o CMakeFiles/vgio_static.dir/vg.pb.cc.o -c /<>/deps/libvgio/build-vg/vg.pb.cc [ 55%] Building CXX object CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o -MF CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o.d -o CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o -c /<>/deps/libvgio/src/alignment_emitter.cpp [ 58%] Building CXX object CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o -MF CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o.d -o CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o -c /<>/deps/libvgio/src/alignment_io.cpp [ 61%] Building CXX object CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o -c /<>/deps/libvgio/src/basic_stream.cpp [ 64%] Building CXX object CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_input_stream.cpp [ 67%] Building CXX object CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_output_stream.cpp [ 70%] Building CXX object CMakeFiles/vgio_static.dir/src/edit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/edit.cpp.o -MF CMakeFiles/vgio_static.dir/src/edit.cpp.o.d -o CMakeFiles/vgio_static.dir/src/edit.cpp.o -c /<>/deps/libvgio/src/edit.cpp [ 73%] Building CXX object CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o -MF CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o -c /<>/deps/libvgio/src/hfile_cppstream.cpp [ 76%] Building CXX object CMakeFiles/vgio_static.dir/src/json2pb.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/json2pb.cpp.o -MF CMakeFiles/vgio_static.dir/src/json2pb.cpp.o.d -o CMakeFiles/vgio_static.dir/src/json2pb.cpp.o -c /<>/deps/libvgio/src/json2pb.cpp [ 79%] Building CXX object CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o -MF CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o.d -o CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o -c /<>/deps/libvgio/src/message_emitter.cpp [ 82%] Building CXX object CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o -MF CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o.d -o CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o -c /<>/deps/libvgio/src/message_iterator.cpp [ 85%] Building CXX object CMakeFiles/vgio_static.dir/src/registry.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/registry.cpp.o -MF CMakeFiles/vgio_static.dir/src/registry.cpp.o.d -o CMakeFiles/vgio_static.dir/src/registry.cpp.o -c /<>/deps/libvgio/src/registry.cpp [ 88%] Building CXX object CMakeFiles/vgio_static.dir/src/stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/stream.cpp.o -c /<>/deps/libvgio/src/stream.cpp [ 91%] Building CXX object CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o -MF CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o.d -o CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o -c /<>/deps/libvgio/src/stream_multiplexer.cpp [ 94%] Building CXX object CMakeFiles/vgio_static.dir/src/vpkg.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/vpkg.cpp.o -MF CMakeFiles/vgio_static.dir/src/vpkg.cpp.o.d -o CMakeFiles/vgio_static.dir/src/vpkg.cpp.o -c /<>/deps/libvgio/src/vpkg.cpp [ 97%] Linking CXX static library libvgio.a /usr/bin/cmake -P CMakeFiles/vgio_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/vgio_static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libvgio.a CMakeFiles/vgio_static.dir/vg.pb.cc.o CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o CMakeFiles/vgio_static.dir/src/edit.cpp.o CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o CMakeFiles/vgio_static.dir/src/json2pb.cpp.o CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o CMakeFiles/vgio_static.dir/src/registry.cpp.o CMakeFiles/vgio_static.dir/src/stream.cpp.o CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o CMakeFiles/vgio_static.dir/src/vpkg.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libvgio.a make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [100%] Built target vgio_static make[4]: Leaving directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles 0 make[3]: Leaving directory '/<>/deps/libvgio/build-vg' make[3]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -S/<>/deps/libvgio -B/<>/deps/libvgio/build-vg --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles /<>/deps/libvgio/build-vg//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/link_target.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E create_symlink . vg make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 0%] Built target link_target make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' make[5]: Nothing to be done for 'CMakeFiles/vgio.dir/build'. make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 50%] Built target vgio make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' make[5]: Nothing to be done for 'CMakeFiles/vgio_static.dir/build'. make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [100%] Built target vgio_static make[4]: Leaving directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/libvgio/build-vg' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/libvgio/build-vg' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /<>/lib/libvgio.so -- Installing: /<>/lib/libvgio.a -- Up-to-date: /<>/include -- Up-to-date: /<>/include/vg -- Installing: /<>/include/vg/io -- Installing: /<>/include/vg/io/vpkg.hpp -- Installing: /<>/include/vg/io/stream_multiplexer.hpp -- Installing: /<>/include/vg/io/stream.hpp -- Installing: /<>/include/vg/io/registry.hpp -- Installing: /<>/include/vg/io/protobuf_iterator.hpp -- Installing: /<>/include/vg/io/protobuf_emitter.hpp -- Installing: /<>/include/vg/io/message_iterator.hpp -- Installing: /<>/include/vg/io/message_emitter.hpp -- Installing: /<>/include/vg/io/loader.hpp -- Installing: /<>/include/vg/io/json2pb.h -- Installing: /<>/include/vg/io/hfile_internal.hpp -- Installing: /<>/include/vg/io/hfile_cppstream.hpp -- Installing: /<>/include/vg/io/gafkluge.hpp -- Installing: /<>/include/vg/io/fdstream.hpp -- Installing: /<>/include/vg/io/edit.hpp -- Installing: /<>/include/vg/io/blocked_gzip_output_stream.hpp -- Installing: /<>/include/vg/io/blocked_gzip_input_stream.hpp -- Installing: /<>/include/vg/io/basic_stream.hpp -- Installing: /<>/include/vg/io/alignment_io.hpp -- Installing: /<>/include/vg/io/alignment_emitter.hpp -- Installing: /<>/include/vg/vg.pb.h -- Installing: /<>/lib/cmake/VGio/VGioTargets.cmake -- Installing: /<>/lib/cmake/VGio/VGioTargets-noconfig.cmake -- Installing: /<>/lib/cmake/VGio/VGioConfig.cmake -- Installing: /<>/lib/cmake/VGio/VGioConfigVersion.cmake make[3]: Leaving directory '/<>/deps/libvgio/build-vg' rm -Rf include/dynamic.hpp include/dynamic # annoyingly doesn't have an install option on the cmake, so we manually move their external dependency headers cd /<>/deps/DYNAMIC && rm -Rf build && mkdir -p build && cd build && export CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp" && cmake -DCMAKE_VERBOSE_MAKEFILE=ON .. && make CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Setting build type to 'Release' as none was specified. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Building in Release mode -- Configuring done (1.6s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/DYNAMIC/build make[3]: Entering directory '/<>/deps/DYNAMIC/build' /usr/bin/cmake -S/<>/deps/DYNAMIC -B/<>/deps/DYNAMIC/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/DYNAMIC/build/CMakeFiles /<>/deps/DYNAMIC/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/DYNAMIC/build' make -f CMakeFiles/debug.dir/build.make CMakeFiles/debug.dir/depend make[5]: Entering directory '/<>/deps/DYNAMIC/build' cd /<>/deps/DYNAMIC/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/DYNAMIC /<>/deps/DYNAMIC /<>/deps/DYNAMIC/build /<>/deps/DYNAMIC/build /<>/deps/DYNAMIC/build/CMakeFiles/debug.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/DYNAMIC/build' make -f CMakeFiles/debug.dir/build.make CMakeFiles/debug.dir/build make[5]: Entering directory '/<>/deps/DYNAMIC/build' [ 6%] Building CXX object CMakeFiles/debug.dir/debug.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/DYNAMIC/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -mssse3 -fopenmp --std=c++11 -O3 -DNDEBUG -ggdb -Ofast -fstrict-aliasing -DNDEBUG -march=native -MD -MT CMakeFiles/debug.dir/debug.cpp.o -MF CMakeFiles/debug.dir/debug.cpp.o.d -o CMakeFiles/debug.dir/debug.cpp.o -c /<>/deps/DYNAMIC/debug.cpp cc1plus: error: bad value ‘native’ for ‘-march=’ switch cc1plus: note: valid arguments to ‘-march=’ switch are: nocona core2 nehalem corei7 westmere sandybridge corei7-avx ivybridge core-avx-i haswell core-avx2 broadwell skylake skylake-avx512 cannonlake icelake-client rocketlake icelake-server cascadelake tigerlake cooperlake sapphirerapids emeraldrapids alderlake raptorlake meteorlake graniterapids graniterapids-d arrowlake arrowlake-s lunarlake pantherlake bonnell atom silvermont slm goldmont goldmont-plus tremont gracemont sierraforest grandridge clearwaterforest knl knm x86-64 x86-64-v2 x86-64-v3 x86-64-v4 eden-x2 nano nano-1000 nano-2000 nano-3000 nano-x2 eden-x4 nano-x4 lujiazui yongfeng k8 k8-sse3 opteron opteron-sse3 athlon64 athlon64-sse3 athlon-fx amdfam10 barcelona bdver1 bdver2 bdver3 bdver4 znver1 znver2 znver3 znver4 znver5 btver1 btver2 make[5]: *** [CMakeFiles/debug.dir/build.make:82: CMakeFiles/debug.dir/debug.cpp.o] Error 1 make[5]: Leaving directory '/<>/deps/DYNAMIC/build' make[4]: *** [CMakeFiles/Makefile2:111: CMakeFiles/debug.dir/all] Error 2 make[4]: Leaving directory '/<>/deps/DYNAMIC/build' make[3]: *** [Makefile:94: all] Error 2 make[3]: Leaving directory '/<>/deps/DYNAMIC/build' make[2]: *** [Makefile:607: include/dynamic/dynamic.hpp] Error 2 make[2]: Leaving directory '/<>' dh_auto_build: error: make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc SFX=-ssse3 all test/build_graph bin/shuf returned exit code 2 make[2]: Entering directory '/<>' Package libfastahack was not found in the pkg-config search path. Perhaps you should add the directory containing `libfastahack.pc' to the PKG_CONFIG_PATH environment variable Package 'libfastahack', required by 'virtual:world', not found Package cairo was not found in the pkg-config search path. Perhaps you should add the directory containing `cairo.pc' to the PKG_CONFIG_PATH environment variable Package 'cairo', required by 'virtual:world', not found Package 'libzstd', required by 'virtual:world', not found Package 'protobuf', required by 'virtual:world', not found Package 'jansson', required by 'virtual:world', not found Package libfastahack was not found in the pkg-config search path. Perhaps you should add the directory containing `libfastahack.pc' to the PKG_CONFIG_PATH environment variable Package 'libfastahack', required by 'virtual:world', not found Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable Package 'htslib', required by 'virtual:world', not found Package cairo was not found in the pkg-config search path. Perhaps you should add the directory containing `cairo.pc' to the PKG_CONFIG_PATH environment variable Package 'cairo', required by 'virtual:world', not found Package 'libzstd', required by 'virtual:world', not found Package protobuf was not found in the pkg-config search path. Perhaps you should add the directory containing `protobuf.pc' to the PKG_CONFIG_PATH environment variable Package 'protobuf', required by 'virtual:world', not found Package 'jansson', required by 'virtual:world', not found OS is Linux Compiler g++ is assumed to be GCC CXXFLAGS are -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp LDFLAGS are -Wl,-z,relro -Wl,-z,now Makefile:266: OpenMP header omp.h is not available! vg will not be able to build! rm -f -r bin/unittest rm -f -r lib rm -f -r obj/unittest/support rm -f -r obj/unittest rm -f -r obj/subcommand rm -f -r obj/pic/io rm -f -r obj/io rm -f -r obj/pic/algorithms rm -f -r obj/algorithms rm -f -r obj/config rm -f -r obj/pic rm -f -r obj rm -f -r share/ cd ./deps && cd sonLib && make clean make[3]: Entering directory '/<>/deps/sonLib' cd C && make clean make[4]: Entering directory '/<>/deps/sonLib/C' rm -rf ../bin ../lib make[4]: Leaving directory '/<>/deps/sonLib/C' cd externalTools && make clean make[4]: Entering directory '/<>/deps/sonLib/externalTools' cd cutest && make clean make[5]: Entering directory '/<>/deps/sonLib/externalTools/cutest' rm -f ../../lib/cuTest.a ../../lib/CuTest.h make[5]: Leaving directory '/<>/deps/sonLib/externalTools/cutest' cd quicktree_1.1 && make clean make[5]: Entering directory '/<>/deps/sonLib/externalTools/quicktree_1.1' rm -rf ./obj/*.o make[5]: Leaving directory '/<>/deps/sonLib/externalTools/quicktree_1.1' make[4]: Leaving directory '/<>/deps/sonLib/externalTools' rm -f ./bin/sonLib_daemonize.py make[3]: Leaving directory '/<>/deps/sonLib' cd ./deps && cd gcsa2 && make clean make[3]: Entering directory '/<>/deps/gcsa2' rm -rf bin lib obj rm -f *.o *.a build_gcsa convert_graph gcsa_format try_extend cd benchmark && make clean make[4]: Entering directory '/<>/deps/gcsa2/benchmark' rm -f count_kmers query_gcsa csa_builder csa_query *.o make[4]: Leaving directory '/<>/deps/gcsa2/benchmark' make[3]: Leaving directory '/<>/deps/gcsa2' cd ./deps && cd gbwt && make clean make[3]: Entering directory '/<>/deps/gbwt' rm -rf bin lib obj rm -f *.o *.a build_gbwt build_ri merge_gbwt benchmark metadata_tool remove_seq cd tests && make clean make[4]: Entering directory '/<>/deps/gbwt/tests' rm -f test_bwtmerge test_metadata test_queries test_support test_variants *.o make[4]: Leaving directory '/<>/deps/gbwt/tests' make[3]: Leaving directory '/<>/deps/gbwt' cd ./deps && cd gbwtgraph && make clean make[3]: Entering directory '/<>/deps/gbwtgraph' rm -rf bin lib obj rm -f *.o *.a gfa2gbwt cd tests && make clean make[4]: Entering directory '/<>/deps/gbwtgraph/tests' rm -f test_utils test_gbwtgraph test_cached_gbwtgraph test_gfa test_gbz test_minimizer test_index test_algorithms test_path_cover *.o make[4]: Leaving directory '/<>/deps/gbwtgraph/tests' make[3]: Leaving directory '/<>/deps/gbwtgraph' cd ./deps && cd kff-cpp-api && rm -Rf build cd ./deps && cd gssw && make clean make[3]: Entering directory '/<>/deps/gssw' rm -f -r lib/ rm -f -r bin/ rm -f -r obj/ make[3]: Leaving directory '/<>/deps/gssw' cd ./deps && cd ssw && cd src && make clean make[3]: Entering directory '/<>/deps/ssw/src' rm -f ssw.o ssw_cpp.o ssw_test libssw.so example_c example_cpp libsswjni.so ssw.jar ssw/Aligner.class ssw/Alignment.class ssw/Example.class *~ make[3]: Leaving directory '/<>/deps/ssw/src' cd ./deps && cd progress_bar && make clean make[3]: Entering directory '/<>/deps/progress_bar' make[3]: Leaving directory '/<>/deps/progress_bar' cd ./deps && cd sdsl-lite && ./uninstall.sh || true Library files will be removed from '/var/lib/sbuild/lib' and '/var/lib/sbuild/include' make[3]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 uninstall-sdsl make[4]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 CMakeFiles/uninstall-sdsl.dir/all make[5]: Entering directory '/<>/deps/sdsl-lite/build' make -f CMakeFiles/uninstall-sdsl.dir/build.make CMakeFiles/uninstall-sdsl.dir/depend make[6]: Entering directory '/<>/deps/sdsl-lite/build' cd /<>/deps/sdsl-lite/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/sdsl-lite /<>/deps/sdsl-lite /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build/CMakeFiles/uninstall-sdsl.dir/DependInfo.cmake "--color=" make[6]: Leaving directory '/<>/deps/sdsl-lite/build' make -f CMakeFiles/uninstall-sdsl.dir/build.make CMakeFiles/uninstall-sdsl.dir/build make[6]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -P /<>/deps/sdsl-lite/build/CMakeModules/cmake_uninstall.cmake -- Looking for "/<>/lib/pkgconfig/sdsl-lite.pc" - not found -- Looking for "/<>/include/sdsl/bit_vector_il.hpp" - found -- Looking for "/<>/include/sdsl/bit_vectors.hpp" - found -- Looking for "/<>/include/sdsl/bits.hpp" - found -- Looking for "/<>/include/sdsl/bp_support.hpp" - found -- Looking for "/<>/include/sdsl/bp_support_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/bp_support_g.hpp" - found -- Looking for "/<>/include/sdsl/bp_support_gg.hpp" - found -- Looking for "/<>/include/sdsl/bp_support_sada.hpp" - found -- Looking for "/<>/include/sdsl/coder.hpp" - found -- Looking for "/<>/include/sdsl/coder_comma.hpp" - found -- Looking for "/<>/include/sdsl/coder_elias_delta.hpp" - found -- Looking for "/<>/include/sdsl/coder_elias_gamma.hpp" - found -- Looking for "/<>/include/sdsl/coder_fibonacci.hpp" - found -- Looking for "/<>/include/sdsl/config.hpp" - found -- Looking for "/<>/include/sdsl/construct.hpp" - found -- Looking for "/<>/include/sdsl/construct_bwt.hpp" - found -- Looking for "/<>/include/sdsl/construct_config.hpp" - found -- Looking for "/<>/include/sdsl/construct_isa.hpp" - found -- Looking for "/<>/include/sdsl/construct_lcp.hpp" - found -- Looking for "/<>/include/sdsl/construct_lcp_helper.hpp" - found -- Looking for "/<>/include/sdsl/construct_sa.hpp" - found -- Looking for "/<>/include/sdsl/construct_sa_se.hpp" - found -- Looking for "/<>/include/sdsl/csa_alphabet_strategy.hpp" - found -- Looking for "/<>/include/sdsl/csa_bitcompressed.hpp" - found -- Looking for "/<>/include/sdsl/csa_sada.hpp" - found -- Looking for "/<>/include/sdsl/csa_sampling_strategy.hpp" - found -- Looking for "/<>/include/sdsl/csa_wt.hpp" - found -- Looking for "/<>/include/sdsl/cst_fully.hpp" - found -- Looking for "/<>/include/sdsl/cst_iterators.hpp" - found -- Looking for "/<>/include/sdsl/cst_sada.hpp" - found -- Looking for "/<>/include/sdsl/cst_sct3.hpp" - found -- Looking for "/<>/include/sdsl/dac_vector.hpp" - found -- Looking for "/<>/include/sdsl/enc_vector.hpp" - found -- Looking for "/<>/include/sdsl/fast_cache.hpp" - found -- Looking for "/<>/include/sdsl/hyb_vector.hpp" - found -- Looking for "/<>/include/sdsl/int_vector.hpp" - found -- Looking for "/<>/include/sdsl/int_vector_buffer.hpp" - found -- Looking for "/<>/include/sdsl/int_vector_io_wrappers.hpp" - found -- Looking for "/<>/include/sdsl/int_vector_mapper.hpp" - found -- Looking for "/<>/include/sdsl/inv_perm_support.hpp" - found -- Looking for "/<>/include/sdsl/io.hpp" - found -- Looking for "/<>/include/sdsl/iterators.hpp" - found -- Looking for "/<>/include/sdsl/k2_treap.hpp" - found -- Looking for "/<>/include/sdsl/k2_treap_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/k2_treap_helper.hpp" - found -- Looking for "/<>/include/sdsl/k2_tree.hpp" - found -- Looking for "/<>/include/sdsl/k2_tree_helper.hpp" - found -- Looking for "/<>/include/sdsl/lcp.hpp" - found -- Looking for "/<>/include/sdsl/lcp_bitcompressed.hpp" - found -- Looking for "/<>/include/sdsl/lcp_byte.hpp" - found -- Looking for "/<>/include/sdsl/lcp_dac.hpp" - found -- Looking for "/<>/include/sdsl/lcp_support_sada.hpp" - found -- Looking for "/<>/include/sdsl/lcp_support_tree.hpp" - found -- Looking for "/<>/include/sdsl/lcp_support_tree2.hpp" - found -- Looking for "/<>/include/sdsl/lcp_vlc.hpp" - found -- Looking for "/<>/include/sdsl/lcp_wt.hpp" - found -- Looking for "/<>/include/sdsl/louds_tree.hpp" - found -- Looking for "/<>/include/sdsl/memory_management.hpp" - found -- Looking for "/<>/include/sdsl/nearest_neighbour_dictionary.hpp" - found -- Looking for "/<>/include/sdsl/nn_dict_dynamic.hpp" - found -- Looking for "/<>/include/sdsl/qsufsort.hpp" - found -- Looking for "/<>/include/sdsl/ram_filebuf.hpp" - found -- Looking for "/<>/include/sdsl/ram_fs.hpp" - found -- Looking for "/<>/include/sdsl/rank_support.hpp" - found -- Looking for "/<>/include/sdsl/rank_support_scan.hpp" - found -- Looking for "/<>/include/sdsl/rank_support_v.hpp" - found -- Looking for "/<>/include/sdsl/rank_support_v5.hpp" - found -- Looking for "/<>/include/sdsl/raster_img.hpp" - found -- Looking for "/<>/include/sdsl/rle_vector.hpp" - found -- Looking for "/<>/include/sdsl/rmq_succinct_sada.hpp" - found -- Looking for "/<>/include/sdsl/rmq_succinct_sct.hpp" - found -- Looking for "/<>/include/sdsl/rmq_support.hpp" - found -- Looking for "/<>/include/sdsl/rmq_support_sparse_table.hpp" - found -- Looking for "/<>/include/sdsl/rrr_helper.hpp" - found -- Looking for "/<>/include/sdsl/rrr_vector.hpp" - found -- Looking for "/<>/include/sdsl/rrr_vector_15.hpp" - found -- Looking for "/<>/include/sdsl/sd_vector.hpp" - found -- Looking for "/<>/include/sdsl/sdsl_concepts.hpp" - found -- Looking for "/<>/include/sdsl/select_support.hpp" - found -- Looking for "/<>/include/sdsl/select_support_mcl.hpp" - found -- Looking for "/<>/include/sdsl/select_support_scan.hpp" - found -- Looking for "/<>/include/sdsl/sfstream.hpp" - found -- Looking for "/<>/include/sdsl/simple_sds.hpp" - found -- Looking for "/<>/include/sdsl/sorted_int_stack.hpp" - found -- Looking for "/<>/include/sdsl/sorted_multi_stack_support.hpp" - found -- Looking for "/<>/include/sdsl/sorted_stack_support.hpp" - found -- Looking for "/<>/include/sdsl/structure_tree.hpp" - found -- Looking for "/<>/include/sdsl/suffix_array_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/suffix_array_helper.hpp" - found -- Looking for "/<>/include/sdsl/suffix_arrays.hpp" - found -- Looking for "/<>/include/sdsl/suffix_tree_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/suffix_tree_helper.hpp" - found -- Looking for "/<>/include/sdsl/suffix_trees.hpp" - found -- Looking for "/<>/include/sdsl/uint128_t.hpp" - found -- Looking for "/<>/include/sdsl/uint256_t.hpp" - found -- Looking for "/<>/include/sdsl/uintx_t.hpp" - found -- Looking for "/<>/include/sdsl/util.hpp" - found -- Looking for "/<>/include/sdsl/vectors.hpp" - found -- Looking for "/<>/include/sdsl/vlc_vector.hpp" - found -- Looking for "/<>/include/sdsl/wavelet_trees.hpp" - found -- Looking for "/<>/include/sdsl/wm_int.hpp" - found -- Looking for "/<>/include/sdsl/wt_algorithm.hpp" - found -- Looking for "/<>/include/sdsl/wt_ap.hpp" - found -- Looking for "/<>/include/sdsl/wt_blcd.hpp" - found -- Looking for "/<>/include/sdsl/wt_gmr.hpp" - found -- Looking for "/<>/include/sdsl/wt_helper.hpp" - found -- Looking for "/<>/include/sdsl/wt_huff.hpp" - found -- Looking for "/<>/include/sdsl/wt_hutu.hpp" - found -- Looking for "/<>/include/sdsl/wt_int.hpp" - found -- Looking for "/<>/include/sdsl/wt_pc.hpp" - found -- Looking for "/<>/include/sdsl/wt_rlmn.hpp" - found -- Looking for "/<>/lib/libsdsl.a" - not found -- Uninstalling "/<>/include/sdsl/bit_vector_il.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bit_vectors.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bits.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support_g.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support_gg.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/bp_support_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder_comma.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder_elias_delta.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder_elias_gamma.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/coder_fibonacci.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/config.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_bwt.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_config.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_isa.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_lcp.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_lcp_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_sa.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/construct_sa_se.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_alphabet_strategy.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_bitcompressed.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_sampling_strategy.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/csa_wt.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/cst_fully.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/cst_iterators.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/cst_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/cst_sct3.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/dac_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/enc_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/fast_cache.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/hyb_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/int_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/int_vector_buffer.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/int_vector_io_wrappers.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/int_vector_mapper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/inv_perm_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/io.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/iterators.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_treap.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_treap_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_treap_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_tree.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/k2_tree_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_bitcompressed.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_byte.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_dac.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_support_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_support_tree.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_support_tree2.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_vlc.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/lcp_wt.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/louds_tree.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/memory_management.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/nearest_neighbour_dictionary.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/nn_dict_dynamic.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/qsufsort.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/ram_filebuf.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/ram_fs.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rank_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rank_support_scan.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rank_support_v.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rank_support_v5.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/raster_img.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rle_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rmq_succinct_sada.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rmq_succinct_sct.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rmq_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rmq_support_sparse_table.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rrr_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rrr_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/rrr_vector_15.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sd_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sdsl_concepts.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/select_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/select_support_mcl.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/select_support_scan.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sfstream.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/simple_sds.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sorted_int_stack.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sorted_multi_stack_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/sorted_stack_support.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/structure_tree.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_array_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_array_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_arrays.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_tree_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_tree_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/suffix_trees.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/uint128_t.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/uint256_t.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/uintx_t.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/util.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/vectors.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/vlc_vector.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wavelet_trees.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wm_int.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_algorithm.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_ap.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_blcd.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_gmr.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_helper.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_huff.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_hutu.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_int.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_pc.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. -- Uninstalling "/<>/include/sdsl/wt_rlmn.hpp" CMake Warning (dev) at CMakeModules/cmake_uninstall.cmake:24 (EXEC_PROGRAM): Policy CMP0153 is not set: The exec_program command should not be called. Run "cmake --help-policy CMP0153" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Use execute_process() instead. This warning is for project developers. Use -Wno-dev to suppress it. make[6]: Leaving directory '/<>/deps/sdsl-lite/build' Built target uninstall-sdsl make[5]: Leaving directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make[4]: Leaving directory '/<>/deps/sdsl-lite/build' make[3]: Leaving directory '/<>/deps/sdsl-lite/build' Installed sdsl files were removed. cd ./deps && cd sha1 && make clean make[3]: Entering directory '/<>/deps/sha1' rm -f demo_sha1 test_sha1 make[3]: Leaving directory '/<>/deps/sha1' cd ./deps && cd structures && make clean make[3]: Entering directory '/<>/deps/structures' if [ ! -d bin ]; then mkdir -p bin; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -d lib ]; then mkdir -p lib; fi find bin obj lib -type f -delete make[3]: Leaving directory '/<>/deps/structures' cd ./deps && cd sublinear-Li-Stephens && make clean make[3]: Entering directory '/<>/deps/sublinear-Li-Stephens' rm -f /<>/deps/sublinear-Li-Stephens/bin/* /<>/deps/sublinear-Li-Stephens/obj/*.o /<>/deps/sublinear-Li-Stephens/obj/test/*.o /<>/deps/sublinear-Li-Stephens/lib/* make[3]: Leaving directory '/<>/deps/sublinear-Li-Stephens' cd ./deps && cd libhandlegraph && rm -Rf build CMakeCache.txt CMakeFiles cd ./deps && cd libvgio && rm -Rf build CMakeCache.txt CMakeFiles # lru_cache is never built because it is header-only # bash-tap is never built either make[2]: Leaving directory '/<>' make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc SFX=-sse3 all test/build_graph bin/shuf make[2]: Entering directory '/<>' OS is Linux Compiler x86_64-linux-gnu-g++ is assumed to be GCC CXXFLAGS are -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp LDFLAGS are -Wl,-z,relro -Wl,-z,now . ./source_me.sh && cd deps/sdsl-lite && BUILD_PORTABLE=1 CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp" ./install.sh /<> Library will be installed in '/<>' WARNING: .git/hooks directory does not exists. The pre-commit hook is not installed. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Compiler is recent enough to support C++14. -- Performing Test HAVE_GCC_STD=C__14__WALL__WEXTRA__DNDEBUG -- Performing Test HAVE_GCC_STD=C__14__WALL__WEXTRA__DNDEBUG - Success -- Performing Test HAVE_GCC_O3__FFAST_MATH__FUNROLL_LOOPS -- Performing Test HAVE_GCC_O3__FFAST_MATH__FUNROLL_LOOPS - Success -- Performing Test HAVE_CXA_DEMANGLE -- Performing Test HAVE_CXA_DEMANGLE - Success -- Compiler supports DEMANGLE. -- Performing Test HAVE_GCC_DHAVE_CXA_DEMANGLE -- Performing Test HAVE_GCC_DHAVE_CXA_DEMANGLE - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) CMake Warning at CMakeLists.txt:102 (message): git not found. Cloning of submodules will not work. -- Looking for C++ include cstdio -- Looking for C++ include cstdio - found -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (4.5s) -- Generating done (0.6s) -- Build files have been written to: /<>/deps/sdsl-lite/build make[3]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 sdsl make[4]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 8 make -f CMakeFiles/Makefile2 lib/CMakeFiles/sdsl.dir/all make[5]: Entering directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/depend make[6]: Entering directory '/<>/deps/sdsl-lite/build' cd /<>/deps/sdsl-lite/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/sdsl-lite /<>/deps/sdsl-lite/lib /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build/lib /<>/deps/sdsl-lite/build/lib/CMakeFiles/sdsl.dir/DependInfo.cmake "--color=" make[6]: Leaving directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/build make[6]: Entering directory '/<>/deps/sdsl-lite/build' [ 0%] Building CXX object lib/CMakeFiles/sdsl.dir/bits.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/bits.cpp.o -MF CMakeFiles/sdsl.dir/bits.cpp.o.d -o CMakeFiles/sdsl.dir/bits.cpp.o -c /<>/deps/sdsl-lite/lib/bits.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o -MF CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o.d -o CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o -c /<>/deps/sdsl-lite/lib/bp_support_algorithm.cpp In file included from /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:24, from /<>/deps/sdsl-lite/build/lib/../include/sdsl/bp_support_algorithm.hpp:24, from /<>/deps/sdsl-lite/lib/bp_support_algorithm.cpp:1: In static member function ‘static void sdsl::bits::write_int(uint64_t*, uint64_t, uint8_t, uint8_t)’, inlined from ‘static void sdsl::memory_manager::resize(t_vec&, typename t_vec::size_type) [with t_vec = sdsl::int_vector<0>]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/memory_management.hpp:364:36, inlined from ‘void sdsl::int_vector< >::bit_resize(size_type) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:1358:27, inlined from ‘void sdsl::int_vector< >::resize(size_type) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:380:23, inlined from ‘sdsl::int_vector< >::int_vector(size_type, value_type, uint8_t) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:1285:11, inlined from ‘sdsl::excess::impl::impl()’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/bp_support_algorithm.hpp:114:46: /<>/deps/sdsl-lite/build/lib/../include/sdsl/bits.hpp:448:9: warning: ‘*temp’ may be used uninitialized [-Wmaybe-uninitialized] 448 | *word &= | ^~~~~ [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o -MF CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o.d -o CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o -c /<>/deps/sdsl-lite/lib/coder_elias_delta.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o -MF CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o.d -o CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o -c /<>/deps/sdsl-lite/lib/coder_elias_gamma.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o -MF CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o.d -o CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o -c /<>/deps/sdsl-lite/lib/coder_fibonacci.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/config.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/config.cpp.o -MF CMakeFiles/sdsl.dir/config.cpp.o.d -o CMakeFiles/sdsl.dir/config.cpp.o -c /<>/deps/sdsl-lite/lib/config.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_config.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_config.cpp.o -MF CMakeFiles/sdsl.dir/construct_config.cpp.o.d -o CMakeFiles/sdsl.dir/construct_config.cpp.o -c /<>/deps/sdsl-lite/lib/construct_config.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o -MF CMakeFiles/sdsl.dir/construct_isa.cpp.o.d -o CMakeFiles/sdsl.dir/construct_isa.cpp.o -c /<>/deps/sdsl-lite/lib/construct_isa.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o -MF CMakeFiles/sdsl.dir/construct_lcp.cpp.o.d -o CMakeFiles/sdsl.dir/construct_lcp.cpp.o -c /<>/deps/sdsl-lite/lib/construct_lcp.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o -MF CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o.d -o CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o -c /<>/deps/sdsl-lite/lib/construct_lcp_helper.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o -MF CMakeFiles/sdsl.dir/construct_sa.cpp.o.d -o CMakeFiles/sdsl.dir/construct_sa.cpp.o -c /<>/deps/sdsl-lite/lib/construct_sa.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o -MF CMakeFiles/sdsl.dir/construct_sa_se.cpp.o.d -o CMakeFiles/sdsl.dir/construct_sa_se.cpp.o -c /<>/deps/sdsl-lite/lib/construct_sa_se.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o -MF CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o.d -o CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o -c /<>/deps/sdsl-lite/lib/csa_alphabet_strategy.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/io.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/io.cpp.o -MF CMakeFiles/sdsl.dir/io.cpp.o.d -o CMakeFiles/sdsl.dir/io.cpp.o -c /<>/deps/sdsl-lite/lib/io.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o -MF CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o.d -o CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o -c /<>/deps/sdsl-lite/lib/lcp_support_tree.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o -MF CMakeFiles/sdsl.dir/louds_tree.cpp.o.d -o CMakeFiles/sdsl.dir/louds_tree.cpp.o -c /<>/deps/sdsl-lite/lib/louds_tree.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/memory_management.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/memory_management.cpp.o -MF CMakeFiles/sdsl.dir/memory_management.cpp.o.d -o CMakeFiles/sdsl.dir/memory_management.cpp.o -c /<>/deps/sdsl-lite/lib/memory_management.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o -MF CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o.d -o CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o -c /<>/deps/sdsl-lite/lib/nn_dict_dynamic.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_filebuf.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/ram_filebuf.cpp.o -MF CMakeFiles/sdsl.dir/ram_filebuf.cpp.o.d -o CMakeFiles/sdsl.dir/ram_filebuf.cpp.o -c /<>/deps/sdsl-lite/lib/ram_filebuf.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_fs.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/ram_fs.cpp.o -MF CMakeFiles/sdsl.dir/ram_fs.cpp.o.d -o CMakeFiles/sdsl.dir/ram_fs.cpp.o -c /<>/deps/sdsl-lite/lib/ram_fs.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o -MF CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o.d -o CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o -c /<>/deps/sdsl-lite/lib/rrr_vector_15.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/sd_vector.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/sd_vector.cpp.o -MF CMakeFiles/sdsl.dir/sd_vector.cpp.o.d -o CMakeFiles/sdsl.dir/sd_vector.cpp.o -c /<>/deps/sdsl-lite/lib/sd_vector.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/sfstream.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/sfstream.cpp.o -MF CMakeFiles/sdsl.dir/sfstream.cpp.o.d -o CMakeFiles/sdsl.dir/sfstream.cpp.o -c /<>/deps/sdsl-lite/lib/sfstream.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/simple_sds.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/simple_sds.cpp.o -MF CMakeFiles/sdsl.dir/simple_sds.cpp.o.d -o CMakeFiles/sdsl.dir/simple_sds.cpp.o -c /<>/deps/sdsl-lite/lib/simple_sds.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/structure_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/structure_tree.cpp.o -MF CMakeFiles/sdsl.dir/structure_tree.cpp.o.d -o CMakeFiles/sdsl.dir/structure_tree.cpp.o -c /<>/deps/sdsl-lite/lib/structure_tree.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/uint128_t.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/uint128_t.cpp.o -MF CMakeFiles/sdsl.dir/uint128_t.cpp.o.d -o CMakeFiles/sdsl.dir/uint128_t.cpp.o -c /<>/deps/sdsl-lite/lib/uint128_t.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/uint256_t.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/uint256_t.cpp.o -MF CMakeFiles/sdsl.dir/uint256_t.cpp.o.d -o CMakeFiles/sdsl.dir/uint256_t.cpp.o -c /<>/deps/sdsl-lite/lib/uint256_t.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/util.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/util.cpp.o -MF CMakeFiles/sdsl.dir/util.cpp.o.d -o CMakeFiles/sdsl.dir/util.cpp.o -c /<>/deps/sdsl-lite/lib/util.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/wt_helper.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/x86_64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/wt_helper.cpp.o -MF CMakeFiles/sdsl.dir/wt_helper.cpp.o.d -o CMakeFiles/sdsl.dir/wt_helper.cpp.o -c /<>/deps/sdsl-lite/lib/wt_helper.cpp [100%] Linking CXX static library libsdsl.a cd /<>/deps/sdsl-lite/build/lib && /usr/bin/cmake -P CMakeFiles/sdsl.dir/cmake_clean_target.cmake cd /<>/deps/sdsl-lite/build/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/sdsl.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libsdsl.a CMakeFiles/sdsl.dir/bits.cpp.o CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o CMakeFiles/sdsl.dir/config.cpp.o CMakeFiles/sdsl.dir/construct_config.cpp.o CMakeFiles/sdsl.dir/construct_isa.cpp.o CMakeFiles/sdsl.dir/construct_lcp.cpp.o CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o CMakeFiles/sdsl.dir/construct_sa.cpp.o CMakeFiles/sdsl.dir/construct_sa_se.cpp.o CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o CMakeFiles/sdsl.dir/io.cpp.o CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o CMakeFiles/sdsl.dir/louds_tree.cpp.o CMakeFiles/sdsl.dir/memory_management.cpp.o CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o CMakeFiles/sdsl.dir/ram_filebuf.cpp.o CMakeFiles/sdsl.dir/ram_fs.cpp.o CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o CMakeFiles/sdsl.dir/sd_vector.cpp.o CMakeFiles/sdsl.dir/sfstream.cpp.o CMakeFiles/sdsl.dir/simple_sds.cpp.o CMakeFiles/sdsl.dir/structure_tree.cpp.o CMakeFiles/sdsl.dir/uint128_t.cpp.o CMakeFiles/sdsl.dir/uint256_t.cpp.o CMakeFiles/sdsl.dir/util.cpp.o CMakeFiles/sdsl.dir/wt_helper.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libsdsl.a make[6]: Leaving directory '/<>/deps/sdsl-lite/build' [100%] Built target sdsl make[5]: Leaving directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make[4]: Leaving directory '/<>/deps/sdsl-lite/build' make[3]: Leaving directory '/<>/deps/sdsl-lite/build' Removing old files rm -rf '/<>/include/sdsl/*' rm -f '/<>/lib/libsdsl*' make[3]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles /<>/deps/sdsl-lite/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/depend make[5]: Entering directory '/<>/deps/sdsl-lite/build' cd /<>/deps/sdsl-lite/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/sdsl-lite /<>/deps/sdsl-lite/lib /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build/lib /<>/deps/sdsl-lite/build/lib/CMakeFiles/sdsl.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/build make[5]: Entering directory '/<>/deps/sdsl-lite/build' make[5]: Nothing to be done for 'lib/CMakeFiles/sdsl.dir/build'. make[5]: Leaving directory '/<>/deps/sdsl-lite/build' [100%] Built target sdsl make[4]: Leaving directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/sdsl-lite/build' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/sdsl-lite/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<>/lib/pkgconfig/sdsl-lite.pc -- Installing: /<>/include/sdsl/bit_vector_il.hpp -- Installing: /<>/include/sdsl/bit_vectors.hpp -- Installing: /<>/include/sdsl/bits.hpp -- Installing: /<>/include/sdsl/bp_support.hpp -- Installing: /<>/include/sdsl/bp_support_algorithm.hpp -- Installing: /<>/include/sdsl/bp_support_g.hpp -- Installing: /<>/include/sdsl/bp_support_gg.hpp -- Installing: /<>/include/sdsl/bp_support_sada.hpp -- Installing: /<>/include/sdsl/coder.hpp -- Installing: /<>/include/sdsl/coder_comma.hpp -- Installing: /<>/include/sdsl/coder_elias_delta.hpp -- Installing: /<>/include/sdsl/coder_elias_gamma.hpp -- Installing: /<>/include/sdsl/coder_fibonacci.hpp -- Installing: /<>/include/sdsl/config.hpp -- Installing: /<>/include/sdsl/construct.hpp -- Installing: /<>/include/sdsl/construct_bwt.hpp -- Installing: /<>/include/sdsl/construct_config.hpp -- Installing: /<>/include/sdsl/construct_isa.hpp -- Installing: /<>/include/sdsl/construct_lcp.hpp -- Installing: /<>/include/sdsl/construct_lcp_helper.hpp -- Installing: /<>/include/sdsl/construct_sa.hpp -- Installing: /<>/include/sdsl/construct_sa_se.hpp -- Installing: /<>/include/sdsl/csa_alphabet_strategy.hpp -- Installing: /<>/include/sdsl/csa_bitcompressed.hpp -- Installing: /<>/include/sdsl/csa_sada.hpp -- Installing: /<>/include/sdsl/csa_sampling_strategy.hpp -- Installing: /<>/include/sdsl/csa_wt.hpp -- Installing: /<>/include/sdsl/cst_fully.hpp -- Installing: /<>/include/sdsl/cst_iterators.hpp -- Installing: /<>/include/sdsl/cst_sada.hpp -- Installing: /<>/include/sdsl/cst_sct3.hpp -- Installing: /<>/include/sdsl/dac_vector.hpp -- Installing: /<>/include/sdsl/enc_vector.hpp -- Installing: /<>/include/sdsl/fast_cache.hpp -- Installing: /<>/include/sdsl/hyb_vector.hpp -- Installing: /<>/include/sdsl/int_vector.hpp -- Installing: /<>/include/sdsl/int_vector_buffer.hpp -- Installing: /<>/include/sdsl/int_vector_io_wrappers.hpp -- Installing: /<>/include/sdsl/int_vector_mapper.hpp -- Installing: /<>/include/sdsl/inv_perm_support.hpp -- Installing: /<>/include/sdsl/io.hpp -- Installing: /<>/include/sdsl/iterators.hpp -- Installing: /<>/include/sdsl/k2_treap.hpp -- Installing: /<>/include/sdsl/k2_treap_algorithm.hpp -- Installing: /<>/include/sdsl/k2_treap_helper.hpp -- Installing: /<>/include/sdsl/k2_tree.hpp -- Installing: /<>/include/sdsl/k2_tree_helper.hpp -- Installing: /<>/include/sdsl/lcp.hpp -- Installing: /<>/include/sdsl/lcp_bitcompressed.hpp -- Installing: /<>/include/sdsl/lcp_byte.hpp -- Installing: /<>/include/sdsl/lcp_dac.hpp -- Installing: /<>/include/sdsl/lcp_support_sada.hpp -- Installing: /<>/include/sdsl/lcp_support_tree.hpp -- Installing: /<>/include/sdsl/lcp_support_tree2.hpp -- Installing: /<>/include/sdsl/lcp_vlc.hpp -- Installing: /<>/include/sdsl/lcp_wt.hpp -- Installing: /<>/include/sdsl/louds_tree.hpp -- Installing: /<>/include/sdsl/memory_management.hpp -- Installing: /<>/include/sdsl/nearest_neighbour_dictionary.hpp -- Installing: /<>/include/sdsl/nn_dict_dynamic.hpp -- Installing: /<>/include/sdsl/qsufsort.hpp -- Installing: /<>/include/sdsl/ram_filebuf.hpp -- Installing: /<>/include/sdsl/ram_fs.hpp -- Installing: /<>/include/sdsl/rank_support.hpp -- Installing: /<>/include/sdsl/rank_support_scan.hpp -- Installing: /<>/include/sdsl/rank_support_v.hpp -- Installing: /<>/include/sdsl/rank_support_v5.hpp -- Installing: /<>/include/sdsl/raster_img.hpp -- Installing: /<>/include/sdsl/rle_vector.hpp -- Installing: /<>/include/sdsl/rmq_succinct_sada.hpp -- Installing: /<>/include/sdsl/rmq_succinct_sct.hpp -- Installing: /<>/include/sdsl/rmq_support.hpp -- Installing: /<>/include/sdsl/rmq_support_sparse_table.hpp -- Installing: /<>/include/sdsl/rrr_helper.hpp -- Installing: /<>/include/sdsl/rrr_vector.hpp -- Installing: /<>/include/sdsl/rrr_vector_15.hpp -- Installing: /<>/include/sdsl/sd_vector.hpp -- Installing: /<>/include/sdsl/sdsl_concepts.hpp -- Installing: /<>/include/sdsl/select_support.hpp -- Installing: /<>/include/sdsl/select_support_mcl.hpp -- Installing: /<>/include/sdsl/select_support_scan.hpp -- Installing: /<>/include/sdsl/sfstream.hpp -- Installing: /<>/include/sdsl/simple_sds.hpp -- Installing: /<>/include/sdsl/sorted_int_stack.hpp -- Installing: /<>/include/sdsl/sorted_multi_stack_support.hpp -- Installing: /<>/include/sdsl/sorted_stack_support.hpp -- Installing: /<>/include/sdsl/structure_tree.hpp -- Installing: /<>/include/sdsl/suffix_array_algorithm.hpp -- Installing: /<>/include/sdsl/suffix_array_helper.hpp -- Installing: /<>/include/sdsl/suffix_arrays.hpp -- Installing: /<>/include/sdsl/suffix_tree_algorithm.hpp -- Installing: /<>/include/sdsl/suffix_tree_helper.hpp -- Installing: /<>/include/sdsl/suffix_trees.hpp -- Installing: /<>/include/sdsl/uint128_t.hpp -- Installing: /<>/include/sdsl/uint256_t.hpp -- Installing: /<>/include/sdsl/uintx_t.hpp -- Installing: /<>/include/sdsl/util.hpp -- Installing: /<>/include/sdsl/vectors.hpp -- Installing: /<>/include/sdsl/vlc_vector.hpp -- Installing: /<>/include/sdsl/wavelet_trees.hpp -- Installing: /<>/include/sdsl/wm_int.hpp -- Installing: /<>/include/sdsl/wt_algorithm.hpp -- Installing: /<>/include/sdsl/wt_ap.hpp -- Installing: /<>/include/sdsl/wt_blcd.hpp -- Installing: /<>/include/sdsl/wt_gmr.hpp -- Installing: /<>/include/sdsl/wt_helper.hpp -- Installing: /<>/include/sdsl/wt_huff.hpp -- Installing: /<>/include/sdsl/wt_hutu.hpp -- Installing: /<>/include/sdsl/wt_int.hpp -- Installing: /<>/include/sdsl/wt_pc.hpp -- Installing: /<>/include/sdsl/wt_rlmn.hpp -- Installing: /<>/lib/libsdsl.a make[3]: Leaving directory '/<>/deps/sdsl-lite/build' SUCCESS: sdsl was installed successfully! The sdsl include files are located in '/<>/include'. The library files are located in '/<>/lib'. Sample programs can be found in the examples-directory. Tests in the test-directory A cheat sheet in the extras/cheatsheet-directory. Have fun! Makefile:511: warning: pattern recipe did not update peer target 'lib/libdivsufsort64.a'. Makefile:511: warning: pattern recipe did not update peer target 'lib/libdivsufsort.a'. . ./source_me.sh && cd deps/ssw/src && make && ar rs /<>/lib/libssw.a ssw.o ssw_cpp.o && cp ssw_cpp.h ssw.h /<>/include make[3]: Entering directory '/<>/deps/ssw/src' x86_64-linux-gnu-gcc -c -o ssw.o ssw.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wall -pipe -O3 -I. x86_64-linux-gnu-gcc -o ssw_test ssw.o main.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wall -pipe -O3 -I. -lm -lz x86_64-linux-gnu-gcc -o example_c ssw.o example.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wall -pipe -O3 -I. -lm -lz x86_64-linux-gnu-g++ -c -o ssw_cpp.o ssw_cpp.cpp -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wall -pipe -O3 -I. cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ x86_64-linux-gnu-g++ -o example_cpp example.cpp ssw.o ssw_cpp.o -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wall -pipe -O3 -I. -lm -lz cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ x86_64-linux-gnu-gcc -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wall -pipe -O3 -I. -fPIC -shared -o libssw.so ssw.c make[3]: Leaving directory '/<>/deps/ssw/src' ar: creating /<>/lib/libssw.a . ./source_me.sh && cp -r deps/gcsa2/include/gcsa /<>/include/ && cd deps/gcsa2 && make directories && make lib/libgcsa2.a && mv lib/libgcsa2.a /<>/lib make[3]: Entering directory '/<>/deps/gcsa2' mkdir -p bin mkdir -p lib mkdir -p obj make[3]: Leaving directory '/<>/deps/gcsa2' make[3]: Entering directory '/<>/deps/gcsa2' /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/dbg.o src/dbg.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/files.o src/files.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gcsa.o src/gcsa.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/lcp.o src/lcp.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/path_graph.o src/path_graph.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/support.o src/support.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp ar rcs lib/libgcsa2.a obj/algorithms.o obj/dbg.o obj/files.o obj/gcsa.o obj/internal.o obj/lcp.o obj/path_graph.o obj/support.o obj/utils.o make[3]: Leaving directory '/<>/deps/gcsa2' . ./source_me.sh && cp -r deps/gbwt/include/gbwt /<>/include/ && cd deps/gbwt && make clean && make && mv lib/libgbwt.a /<>/lib make[3]: Entering directory '/<>/deps/gbwt' rm -rf bin lib obj rm -f *.o *.a build_gbwt build_ri merge_gbwt benchmark metadata_tool remove_seq cd tests && make clean make[4]: Entering directory '/<>/deps/gbwt/tests' rm -f test_bwtmerge test_metadata test_queries test_support test_variants *.o make[4]: Leaving directory '/<>/deps/gbwt/tests' make[3]: Leaving directory '/<>/deps/gbwt' make[3]: Entering directory '/<>/deps/gbwt' mkdir -p bin mkdir -p lib mkdir -p obj /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/bwtmerge.o src/bwtmerge.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/cached_gbwt.o src/cached_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/dynamic_gbwt.o src/dynamic_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/fast_locate.o src/fast_locate.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/files.o src/files.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbwt.o src/gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/metadata.o src/metadata.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/support.o src/support.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/test.o src/test.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/variants.o src/variants.cpp ar rcs lib/libgbwt.a obj/algorithms.o obj/bwtmerge.o obj/cached_gbwt.o obj/dynamic_gbwt.o obj/fast_locate.o obj/files.o obj/gbwt.o obj/internal.o obj/metadata.o obj/support.o obj/test.o obj/utils.o obj/variants.o /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/build_gbwt.o src/build_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/build_gbwt obj/build_gbwt.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/build_ri.o src/build_ri.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/build_ri obj/build_ri.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/merge_gbwt.o src/merge_gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/merge_gbwt obj/merge_gbwt.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/benchmark.o src/benchmark.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/benchmark obj/benchmark.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/metadata_tool.o src/metadata_tool.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/metadata_tool obj/metadata_tool.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/remove_seq.o src/remove_seq.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/remove_seq obj/remove_seq.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 rm obj/build_ri.o obj/metadata_tool.o obj/benchmark.o obj/merge_gbwt.o obj/remove_seq.o obj/build_gbwt.o make[3]: Leaving directory '/<>/deps/gbwt' . ./source_me.sh && cd deps/libhandlegraph && rm -Rf build CMakeCache.txt CMakeFiles && mkdir build && cd build && CXXFLAGS="-std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2" cmake -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_PREFIX=/<> -DCMAKE_INSTALL_LIBDIR=lib .. && make && make install -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done libhandlegraph is root project or external_project -- Configuring done (1.5s) -- Generating done (0.1s) -- Build files have been written to: /<>/deps/libhandlegraph/build make[3]: Entering directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -S/<>/deps/libhandlegraph -B/<>/deps/libhandlegraph/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles /<>/deps/libhandlegraph/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_objs.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [ 2%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/deletable_handle_graph.cpp [ 5%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o -c /<>/deps/libhandlegraph/src/dfs.cpp [ 8%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/handle_graph.cpp [ 11%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/mutable_handle_graph.cpp [ 14%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o -c /<>/deps/libhandlegraph/src/path_metadata.cpp [ 17%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o -c /<>/deps/libhandlegraph/src/mutable_path_metadata.cpp [ 20%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/path_handle_graph.cpp [ 22%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/path_position_handle_graph.cpp [ 25%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/mutable_path_handle_graph.cpp [ 28%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/ranked_handle_graph.cpp [ 31%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o -c /<>/deps/libhandlegraph/src/serializable.cpp [ 34%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o -c /<>/deps/libhandlegraph/src/snarl_decomposition.cpp [ 37%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o -c /<>/deps/libhandlegraph/src/trivially_serializable.cpp [ 40%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/types.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/types.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/types.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o -c /<>/deps/libhandlegraph/src/types.cpp [ 42%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o -c /<>/deps/libhandlegraph/src/copy_graph.cpp [ 45%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o -c /<>/deps/libhandlegraph/src/append_graph.cpp [ 48%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o -c /<>/deps/libhandlegraph/src/are_equivalent.cpp [ 51%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o -c /<>/deps/libhandlegraph/src/find_tips.cpp [ 54%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o -c /<>/deps/libhandlegraph/src/topological_sort.cpp [ 57%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o -c /<>/deps/libhandlegraph/src/apply_orientations.cpp [ 60%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o -c /<>/deps/libhandlegraph/src/is_single_stranded.cpp [ 62%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o -c /<>/deps/libhandlegraph/src/count_walks.cpp [ 65%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o -c /<>/deps/libhandlegraph/src/eades_algorithm.cpp [ 68%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o -c /<>/deps/libhandlegraph/src/dagify.cpp In file included from /usr/x86_64-linux-gnu/include/c++/14/x86_64-linux-gnu/bits/c++allocator.h:33, from /usr/x86_64-linux-gnu/include/c++/14/bits/allocator.h:46, from /usr/x86_64-linux-gnu/include/c++/14/vector:63, from /<>/deps/libhandlegraph/src/dagify.cpp:8: In member function ‘void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = long int]’, inlined from ‘static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = long int]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/alloc_traits.h:550:23, inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:389:19, inlined from ‘std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:368:15, inlined from ‘std::vector<_Tp, _Alloc>::~vector() [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:738:7, inlined from ‘std::unordered_map handlegraph::algorithms::dagify(const handlegraph::HandleGraph*, handlegraph::MutableHandleGraph*, size_t)’ at /<>/deps/libhandlegraph/src/dagify.cpp:445:5: /usr/x86_64-linux-gnu/include/c++/14/bits/new_allocator.h:172:33: warning: ‘void operator delete(void*, std::size_t)’ called on pointer ‘’ with nonzero offset [1, 9223372036854775800] [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In member function ‘_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long int]’, inlined from ‘static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long int]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/alloc_traits.h:515:28, inlined from ‘std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:380:33, inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:398:44, inlined from ‘std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:334:26, inlined from ‘std::vector<_Tp, _Alloc>::vector(size_type, const value_type&, const allocator_type&) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/x86_64-linux-gnu/include/c++/14/bits/stl_vector.h:571:47, inlined from ‘std::unordered_map handlegraph::algorithms::dagify(const handlegraph::HandleGraph*, handlegraph::MutableHandleGraph*, size_t)’ at /<>/deps/libhandlegraph/src/dagify.cpp:327:85: /usr/x86_64-linux-gnu/include/c++/14/bits/new_allocator.h:151:55: note: returned from ‘void* operator new(std::size_t)’ 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ [ 71%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o -c /<>/deps/libhandlegraph/src/strongly_connected_components.cpp [ 74%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o -c /<>/deps/libhandlegraph/src/find_shortest_paths.cpp [ 77%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o -c /<>/deps/libhandlegraph/src/dijkstra.cpp [ 80%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o -c /<>/deps/libhandlegraph/src/is_acyclic.cpp [ 82%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o -c /<>/deps/libhandlegraph/src/reverse_complement.cpp [ 85%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o -c /<>/deps/libhandlegraph/src/split_strands.cpp [ 88%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o -c /<>/deps/libhandlegraph/src/chop.cpp [ 91%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o -c /<>/deps/libhandlegraph/src/weakly_connected_components.cpp [ 94%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o -c /<>/deps/libhandlegraph/src/extend.cpp make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 94%] Built target handlegraph_objs make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_shared.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [ 97%] Linking CXX shared library libhandlegraph.so /usr/bin/cmake -E cmake_link_script CMakeFiles/handlegraph_shared.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wl,--dependency-file=CMakeFiles/handlegraph_shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libhandlegraph.so -o libhandlegraph.so CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 97%] Built target handlegraph_shared make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [100%] Linking CXX static library libhandlegraph.a /usr/bin/cmake -P CMakeFiles/handlegraph_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/handlegraph_static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libhandlegraph.a CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libhandlegraph.a make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [100%] Built target handlegraph_static make[4]: Leaving directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles 0 make[3]: Leaving directory '/<>/deps/libhandlegraph/build' make[3]: Entering directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -S/<>/deps/libhandlegraph -B/<>/deps/libhandlegraph/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles /<>/deps/libhandlegraph/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_objs.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_objs.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 94%] Built target handlegraph_objs make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_shared.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_shared.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 97%] Built target handlegraph_shared make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_static.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [100%] Built target handlegraph_static make[4]: Leaving directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/libhandlegraph/build' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/libhandlegraph/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /<>/lib/libhandlegraph.so -- Installing: /<>/lib/libhandlegraph.a -- Up-to-date: /<>/include/handlegraph -- Up-to-date: /<>/include/handlegraph/serializable.hpp -- Up-to-date: /<>/include/handlegraph/util.hpp -- Up-to-date: /<>/include/handlegraph/types.hpp -- Up-to-date: /<>/include/handlegraph/trivially_serializable.hpp -- Up-to-date: /<>/include/handlegraph/snarl_decomposition.hpp -- Up-to-date: /<>/include/handlegraph/serializable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/path_position_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/path_metadata.hpp -- Up-to-date: /<>/include/handlegraph/path_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/named_node_back_translation.hpp -- Up-to-date: /<>/include/handlegraph/mutable_path_mutable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/mutable_path_metadata.hpp -- Up-to-date: /<>/include/handlegraph/mutable_path_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/mutable_path_deletable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/mutable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/iteratee.hpp -- Up-to-date: /<>/include/handlegraph/handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/expanding_overlay_graph.hpp -- Up-to-date: /<>/include/handlegraph/deletable_handle_graph.hpp -- Up-to-date: /<>/include/handlegraph/buildable_snarl_decomposition.hpp -- Up-to-date: /<>/include/handlegraph/algorithms -- Up-to-date: /<>/include/handlegraph/algorithms/weakly_connected_components.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/topological_sort.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/strongly_connected_components.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/split_strands.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/reverse_complement.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/is_single_stranded.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/is_acyclic.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/internal -- Up-to-date: /<>/include/handlegraph/algorithms/internal/dfs.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/find_tips.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/find_shortest_paths.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/extend.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/eades_algorithm.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/dijkstra.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/dagify.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/count_walks.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/copy_graph.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/chop.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/are_equivalent.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/apply_orientations.hpp -- Up-to-date: /<>/include/handlegraph/algorithms/append_graph.hpp -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphTargets.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphTargets-noconfig.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphConfig.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphConfigVersion.cmake make[3]: Leaving directory '/<>/deps/libhandlegraph/build' . ./source_me.sh && cp -r deps/gbwtgraph/include/gbwtgraph /<>/include/ && cd deps/gbwtgraph && make clean && make && mv lib/libgbwtgraph.a /<>/lib make[3]: Entering directory '/<>/deps/gbwtgraph' rm -rf bin lib obj rm -f *.o *.a gfa2gbwt cd tests && make clean make[4]: Entering directory '/<>/deps/gbwtgraph/tests' rm -f test_utils test_gbwtgraph test_cached_gbwtgraph test_gfa test_gbz test_minimizer test_index test_algorithms test_path_cover *.o make[4]: Leaving directory '/<>/deps/gbwtgraph/tests' make[3]: Leaving directory '/<>/deps/gbwtgraph' make[3]: Entering directory '/<>/deps/gbwtgraph' mkdir -p bin mkdir -p lib mkdir -p obj /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/cached_gbwtgraph.o src/cached_gbwtgraph.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbwtgraph.o src/gbwtgraph.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbz.o src/gbz.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gfa.o src/gfa.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/minimizer.o src/minimizer.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/path_cover.o src/path_cover.cpp /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp ar rcs lib/libgbwtgraph.a obj/algorithms.o obj/cached_gbwtgraph.o obj/gbwtgraph.o obj/gbz.o obj/gfa.o obj/internal.o obj/minimizer.o obj/path_cover.o obj/utils.o /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gfa2gbwt.o src/gfa2gbwt.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/gfa2gbwt obj/gfa2gbwt.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbz_stats.o src/gbz_stats.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/gbz_stats obj/gbz_stats.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/kmer_freq.o src/kmer_freq.cpp /usr/bin/x86_64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/kmer_freq obj/kmer_freq.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 rm obj/kmer_freq.o obj/gbz_stats.o obj/gfa2gbwt.o make[3]: Leaving directory '/<>/deps/gbwtgraph' . ./source_me.sh && cd deps/kff-cpp-api && rm -Rf build && mkdir build && cd build && cmake .. && make && cp kff_io.hpp /<>/include && mv libkff.a /<>/lib -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (1.5s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/kff-cpp-api/build make[3]: Entering directory '/<>/deps/kff-cpp-api/build' [ 16%] Building CXX object CMakeFiles/kff.dir/kff_io.cpp.o [ 33%] Linking CXX static library libkff.a [ 33%] Built target kff [ 50%] Building CXX object CMakeFiles/kff_example.dir/main.cpp.o [ 66%] Linking CXX executable kff_example [ 66%] Built target kff_example [ 83%] Building CXX object benchmarks/CMakeFiles/reader_bench.dir/reader.cpp.o [100%] Linking CXX executable reader_bench [100%] Built target reader_bench make[3]: Leaving directory '/<>/deps/kff-cpp-api/build' . ./source_me.sh && cd deps/gssw && make && cp lib/libgssw.a /<>/lib/ && cp src/gssw.h /<>/include/ make[3]: Entering directory '/<>/deps/gssw' x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wall -O3 -g -c -o obj/gssw.o src/gssw.c src/gssw.c: In function ‘gssw_graph_print’: src/gssw.c:1947:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1947 | fprintf(stdout, "GRAPH // node %llu %u %s\n", n->id, n->len, n->seq); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c:1951:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1951 | fprintf(stdout, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c:1951:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1951 | fprintf(stdout, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c: In function ‘gssw_graph_print_stderr’: src/gssw.c:1963:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1963 | fprintf(stderr, "GRAPH // node %llu %u %s\n", n->id, n->len, n->seq); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c:1967:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1967 | fprintf(stderr, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c:1967:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1967 | fprintf(stderr, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c: In function ‘gssw_graph_print_score_matrices’: src/gssw.c:1978:31: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1978 | fprintf(out, "node %llu\n", n->id); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_print_graph_cigar’: src/gssw.c:3623:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 3623 | fprintf(out, "%llu[", nc->node->id); | ~~~^ ~~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_create_seed_byte’: src/gssw.c:5095:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 5095 | fprintf(stderr, "failing is node %llu\n", prev[k]->id); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_create_seed_word’: src/gssw.c:5130:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 5130 | fprintf(stderr, "failing is node %llu\n", prev[k]->id); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_sw_software_byte’: src/gssw.c:277:5: warning: ‘__builtin_memcpy’ writing between 18446744071562067984 and 18446744073709551600 bytes into a region of size 9223372036854775807 [-Wstringop-overflow=] 277 | memcpy(scratch, to_unswizzle, size); | ^ In function ‘unswizzle_byte’, inlined from ‘gssw_sw_software_byte’ at src/gssw.c:405:9: src/gssw.c:271:35: note: destination object of size 9223372036854775807 allocated by ‘malloc’ 271 | uint8_t* scratch = (uint8_t*) malloc(size * sizeof(uint8_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/gssw.c: In function ‘gssw_sw_software_word’: src/gssw.c:1117:5: warning: ‘__builtin_memcpy’ writing between 18446744069414584336 and 18446744073709551600 bytes into a region of size 9223372036854775807 [-Wstringop-overflow=] 1117 | memcpy(scratch, to_unswizzle, size * sizeof(int16_t)); | ^ In function ‘unswizzle_word’, inlined from ‘gssw_sw_software_word’ at src/gssw.c:1249:9: src/gssw.c:1111:35: note: destination object of size 9223372036854775807 allocated by ‘malloc’ 1111 | int16_t* scratch = (int16_t*) malloc(size * sizeof(int16_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/gssw.c: In function ‘gssw_node_create’: src/gssw.c:4975:5: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 4975 | strncpy(n->seq, seq, len); n->seq[len] = 0; | ^ src/gssw.c:4971:19: note: length computed here 4971 | int32_t len = strlen(seq); | ^~~~~~~~~~~ # Make dest directory x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wall -O3 -g src/example.c -o bin/gssw_example obj/gssw.o -lm -lz x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wall -O3 -g src/example_adj.c -o bin/gssw_example_adj obj/gssw.o -lm -lz x86_64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wall -O3 -g src/gssw_test.c -o bin/gssw_test obj/gssw.o -lm -lz ar rvs lib/libgssw.a obj/gssw.o ar: creating lib/libgssw.a a - obj/gssw.o make[3]: Leaving directory '/<>/deps/gssw' . ./source_me.sh && cd ./deps/sonLib && kyotoTycoonLib="" make && cp lib/sonLib.a /<>/lib/libsonlib.a && mkdir -p /<>/include/sonLib && cp lib/*.h /<>/include/sonLib make[3]: Entering directory '/<>/deps/sonLib' cd externalTools && make all make[4]: Entering directory '/<>/deps/sonLib/externalTools' cd cutest && make all make[5]: Entering directory '/<>/deps/sonLib/externalTools/cutest' x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -c CuTest.c ar rc cuTest.a *.o ranlib cuTest.a rm -f *.o mv cuTest.a ../../lib/ cp CuTest.h ../../lib/ make[5]: Leaving directory '/<>/deps/sonLib/externalTools/cutest' cd quicktree_1.1 && make all CC="x86_64-linux-gnu-gcc -std=c99" make[5]: Entering directory '/<>/deps/sonLib/externalTools/quicktree_1.1' x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/align.o ./src/align.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/cluster.o ./src/cluster.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/distancemat.o ./src/distancemat.c ./src/distancemat.c: In function ‘read_phylip_DistanceMatrix’: ./src/distancemat.c:390:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 390 | fscanf( handle, "%s", identifier ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/distancemat.c:397:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 397 | fscanf( handle, "%lf", &dist); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/options.o ./src/options.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/util.o ./src/util.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/sequence.o ./src/sequence.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/quicktree.o ./src/quicktree.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/buildtree.o ./src/buildtree.c x86_64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/tree.o ./src/tree.c ./src/tree.c: In function ‘read_newhampshire_Tnode’: ./src/tree.c:393:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 393 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:406:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 406 | fscanf( handle, "%1s", &c); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:417:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 417 | fscanf( handle, "%1s", &c); /* should be ) */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:420:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 420 | fscanf( handle, "%1s", &c); /* should be : */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c: In function ‘read_newhampshire_Tree’: ./src/tree.c:468:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 468 | fscanf( handle, "("); | ^~~~~~~~~~~~~~~~~~~~ ./src/tree.c:475:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 475 | fscanf( handle, "%1s", &c ); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:484:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 484 | fscanf( handle, "%1s", &c ); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:493:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 493 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:496:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 496 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -g -o bin/quicktree ./obj/align.o ./obj/cluster.o ./obj/distancemat.o ./obj/options.o ./obj/util.o ./obj/sequence.o ./obj/quicktree.o ./obj/buildtree.o ./obj/tree.o -lm make[5]: Leaving directory '/<>/deps/sonLib/externalTools/quicktree_1.1' make[4]: Leaving directory '/<>/deps/sonLib/externalTools' cd C && make all make[4]: Entering directory '/<>/deps/sonLib/C' cp inc/avl.h ../lib/avl.h.tmp mv ../lib/avl.h.tmp ../lib/avl.h cp inc/bioioC.h ../lib/bioioC.h.tmp mv ../lib/bioioC.h.tmp ../lib/bioioC.h cp inc/commonC.h ../lib/commonC.h.tmp mv ../lib/commonC.h.tmp ../lib/commonC.h cp inc/fastCMaths.h ../lib/fastCMaths.h.tmp mv ../lib/fastCMaths.h.tmp ../lib/fastCMaths.h cp inc/hashTableC.h ../lib/hashTableC.h.tmp mv ../lib/hashTableC.h.tmp ../lib/hashTableC.h cp inc/hashTableC_itr.h ../lib/hashTableC_itr.h.tmp mv ../lib/hashTableC_itr.h.tmp ../lib/hashTableC_itr.h cp inc/hashTablePrivateC.h ../lib/hashTablePrivateC.h.tmp mv ../lib/hashTablePrivateC.h.tmp ../lib/hashTablePrivateC.h cp inc/jsmn.h ../lib/jsmn.h.tmp mv ../lib/jsmn.h.tmp ../lib/jsmn.h cp inc/pairwiseAlignment.h ../lib/pairwiseAlignment.h.tmp mv ../lib/pairwiseAlignment.h.tmp ../lib/pairwiseAlignment.h cp inc/sonLib.h ../lib/sonLib.h.tmp mv ../lib/sonLib.h.tmp ../lib/sonLib.h cp inc/sonLibAlign.h ../lib/sonLibAlign.h.tmp mv ../lib/sonLibAlign.h.tmp ../lib/sonLibAlign.h cp inc/sonLibCache.h ../lib/sonLibCache.h.tmp mv ../lib/sonLibCache.h.tmp ../lib/sonLibCache.h cp inc/sonLibCommon.h ../lib/sonLibCommon.h.tmp mv ../lib/sonLibCommon.h.tmp ../lib/sonLibCommon.h cp inc/sonLibCompression.h ../lib/sonLibCompression.h.tmp mv ../lib/sonLibCompression.h.tmp ../lib/sonLibCompression.h cp inc/sonLibConnectivity.h ../lib/sonLibConnectivity.h.tmp mv ../lib/sonLibConnectivity.h.tmp ../lib/sonLibConnectivity.h cp inc/sonLibEulerTour.h ../lib/sonLibEulerTour.h.tmp mv ../lib/sonLibEulerTour.h.tmp ../lib/sonLibEulerTour.h cp inc/sonLibExcept.h ../lib/sonLibExcept.h.tmp mv ../lib/sonLibExcept.h.tmp ../lib/sonLibExcept.h cp inc/sonLibFile.h ../lib/sonLibFile.h.tmp mv ../lib/sonLibFile.h.tmp ../lib/sonLibFile.h cp inc/sonLibHash.h ../lib/sonLibHash.h.tmp mv ../lib/sonLibHash.h.tmp ../lib/sonLibHash.h cp inc/sonLibKVDatabase.h ../lib/sonLibKVDatabase.h.tmp mv ../lib/sonLibKVDatabase.h.tmp ../lib/sonLibKVDatabase.h cp inc/sonLibKVDatabaseConf.h ../lib/sonLibKVDatabaseConf.h.tmp mv ../lib/sonLibKVDatabaseConf.h.tmp ../lib/sonLibKVDatabaseConf.h cp inc/sonLibList.h ../lib/sonLibList.h.tmp mv ../lib/sonLibList.h.tmp ../lib/sonLibList.h cp inc/sonLibMath.h ../lib/sonLibMath.h.tmp mv ../lib/sonLibMath.h.tmp ../lib/sonLibMath.h cp inc/sonLibNaiveConnectivity.h ../lib/sonLibNaiveConnectivity.h.tmp mv ../lib/sonLibNaiveConnectivity.h.tmp ../lib/sonLibNaiveConnectivity.h cp inc/sonLibRandom.h ../lib/sonLibRandom.h.tmp mv ../lib/sonLibRandom.h.tmp ../lib/sonLibRandom.h cp inc/sonLibSet.h ../lib/sonLibSet.h.tmp mv ../lib/sonLibSet.h.tmp ../lib/sonLibSet.h cp inc/sonLibSortedSet.h ../lib/sonLibSortedSet.h.tmp mv ../lib/sonLibSortedSet.h.tmp ../lib/sonLibSortedSet.h cp inc/sonLibString.h ../lib/sonLibString.h.tmp mv ../lib/sonLibString.h.tmp ../lib/sonLibString.h cp inc/sonLibTreap.h ../lib/sonLibTreap.h.tmp mv ../lib/sonLibTreap.h.tmp ../lib/sonLibTreap.h cp inc/sonLibTree.h ../lib/sonLibTree.h.tmp mv ../lib/sonLibTree.h.tmp ../lib/sonLibTree.h cp inc/sonLibTuples.h ../lib/sonLibTuples.h.tmp mv ../lib/sonLibTuples.h.tmp ../lib/sonLibTuples.h cp inc/sonLibTypes.h ../lib/sonLibTypes.h.tmp mv ../lib/sonLibTypes.h.tmp ../lib/sonLibTypes.h cp inc/stGraph.h ../lib/stGraph.h.tmp mv ../lib/stGraph.h.tmp ../lib/stGraph.h cp inc/stJson.h ../lib/stJson.h.tmp mv ../lib/stJson.h.tmp ../lib/stJson.h cp inc/stMatrix.h ../lib/stMatrix.h.tmp mv ../lib/stMatrix.h.tmp ../lib/stMatrix.h cp inc/stPhylogeny.h ../lib/stPhylogeny.h.tmp mv ../lib/stPhylogeny.h.tmp ../lib/stPhylogeny.h cp inc/stPosetAlignment.h ../lib/stPosetAlignment.h.tmp mv ../lib/stPosetAlignment.h.tmp ../lib/stPosetAlignment.h cp inc/stSafeC.h ../lib/stSafeC.h.tmp mv ../lib/stSafeC.h.tmp ../lib/stSafeC.h cp inc/stSpimapLayer.h ../lib/stSpimapLayer.h.tmp mv ../lib/stSpimapLayer.h.tmp ../lib/stSpimapLayer.h cp inc/stThreadPool.h ../lib/stThreadPool.h.tmp mv ../lib/stThreadPool.h.tmp ../lib/stThreadPool.h cp inc/stUnionFind.h ../lib/stUnionFind.h.tmp mv ../lib/stUnionFind.h.tmp ../lib/stUnionFind.h x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -I inc -I ../lib/ -c impl/*.c cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/bioioC.c: In function ‘parseInt’: impl/bioioC.c:265:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 265 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:265:15: note: did you mean to dereference the pointer? 265 | while(*string != '\0' && !isspace(**string)) { | ^ impl/bioioC.c: In function ‘parseFloat’: impl/bioioC.c:286:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 286 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:286:15: note: did you mean to dereference the pointer? 286 | while(*string != '\0' && !isspace(**string)) { | ^ impl/bioioC.c: In function ‘parseString’: impl/bioioC.c:307:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 307 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:307:15: note: did you mean to dereference the pointer? 307 | while(*string != '\0' && !isspace(**string)) { | ^ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibCompression.c: In function ‘stCompression_compress’: impl/sonLibCompression.c:37:9: warning: ‘LZ4_compress’ is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] 37 | int64_t bytesWritten = LZ4_compress(((char*)data) + inputOffset, buffer+(outputOffset+1), subChunk ? ST_LZ4_CHUNK_SIZE : sizeInBytes - inputOffset); | ^~~~~~~ In file included from /usr/include/lz4hc.h:43, from impl/sonLibCompression.c:15: /usr/include/lz4.h:806:75: note: declared here 806 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize); | ^~~~~~~~~~~~ impl/sonLibCompression.c: In function ‘stCompression_decompress’: impl/sonLibCompression.c:60:13: warning: ‘LZ4_uncompress’ is deprecated: use LZ4_decompress_fast() instead [-Wdeprecated-declarations] 60 | int64_t bytesRead = LZ4_uncompress(((char *)compressedData)+inputOffset, | ^~~~~~~ /usr/include/lz4.h:814:68: note: declared here 814 | LZ4_DEPRECATED("use LZ4_decompress_fast() instead") LZ4LIB_API int LZ4_uncompress (const char* source, char* dest, int outputSize); | ^~~~~~~~~~~~~~ impl/sonLibCompression.c:72:17: warning: ‘LZ4_uncompress_unknownOutputSize’ is deprecated: use LZ4_decompress_safe() instead [-Wdeprecated-declarations] 72 | int64_t bytesWritten = LZ4_uncompress_unknownOutputSize(((char *)compressedData)+inputOffset, | ^~~~~~~ /usr/include/lz4.h:815:68: note: declared here 815 | LZ4_DEPRECATED("use LZ4_decompress_safe() instead") LZ4LIB_API int LZ4_uncompress_unknownOutputSize (const char* source, char* dest, int isize, int maxOutputSize); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibConnectivity.c: In function ‘stConnectivity_addEdge’: impl/sonLibConnectivity.c:248:33: warning: pointer ‘component1’ may be used after ‘free’ [-Wuse-after-free] 248 | connectivity->mergeCallback(connectivity->mergeExtraData, component1, component2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘stConnectedComponent_destruct’, inlined from ‘stConnectivity_addEdge’ at impl/sonLibConnectivity.c:238:3: impl/sonLibConnectivity.c:608:9: note: call to ‘free’ here 608 | free(comp); | ^~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibTreap.c: In function ‘stTreap_remove’: impl/sonLibTreap.c:331:18: warning: pointer ‘rmnode’ used after ‘free’ [-Wuse-after-free] 331 | stTreap *p = rmnode->parent; | ^ impl/sonLibTreap.c:329:9: note: call to ‘free’ here 329 | free(rmnode); | ^~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C x86_64-linux-gnu-g++ -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall -funroll-loops -DNDEBUG -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wl,-z,relro -Wl,-z,now -I inc -I ../lib/ -c impl/*.cpp ar rc sonLib.a *.o ../externalTools/quicktree_1.1/obj/buildtree.o ../externalTools/quicktree_1.1/obj/cluster.o ../externalTools/quicktree_1.1/obj/distancemat.o ../externalTools/quicktree_1.1/obj/options.o ../externalTools/quicktree_1.1/obj/sequence.o ../externalTools/quicktree_1.1/obj/tree.o ../externalTools/quicktree_1.1/obj/util.o ranlib sonLib.a rm *.o mv sonLib.a ../lib/ x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -I inc -I ../lib -o ../bin/sonLibTests.tmp tests/allTests.c tests/sonLib*.c tests/st* ../lib/sonLib.a ../lib/cuTest.a -lz -lm -lm -lstdc++ -lpthread -llz4 mv ../bin/sonLibTests.tmp ../bin/sonLibTests x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -I inc -I ../lib -I tests -o ../bin/sonLib_kvDatabaseTest.tmp tests/kvDatabaseTest.c tests/kvDatabaseTestCommon.c ../lib/sonLib.a ../lib/cuTest.a -lz -lm -lm mv ../bin/sonLib_kvDatabaseTest.tmp ../bin/sonLib_kvDatabaseTest x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -I inc -I ../lib -o ../bin/sonLib_cigarTest.tmp tests/cigarsTest.c ../lib/sonLib.a -lm mv ../bin/sonLib_cigarTest.tmp ../bin/sonLib_cigarTest x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -I inc -I ../lib -o ../bin/sonLib_fastaCTest.tmp tests/fastaCTest.c ../lib/sonLib.a -lm mv ../bin/sonLib_fastaCTest.tmp ../bin/sonLib_fastaCTest make[4]: Leaving directory '/<>/deps/sonLib/C' cp sonLib_daemonize.py ./bin/sonLib_daemonize.py chmod +x ./bin/sonLib_daemonize.py make[3]: Leaving directory '/<>/deps/sonLib' . ./source_me.sh && cd ./deps/pinchesAndCacti && make && cd /<>/./deps/sonLib && cp lib/stPinchesAndCacti.a /<>/lib/libpinchesandcacti.a && cp lib/3EdgeConnected.a /<>/lib/lib3edgeconnected.a && mkdir -p /<>/include/sonLib && cp lib/*.h /<>/include/sonLib make[3]: Entering directory '/<>/deps/pinchesAndCacti' cd externalTools && make all make[4]: Entering directory '/<>/deps/pinchesAndCacti/externalTools' cd threeEdgeConnected && make all make[5]: Entering directory '/<>/deps/pinchesAndCacti/externalTools/threeEdgeConnected' x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I ../..//../sonLib/lib/ -c impl/*.c ar rc 3EdgeConnected.a *.o ranlib 3EdgeConnected.a rm *.o mv 3EdgeConnected.a ../..//../sonLib/lib/ cp inc/*.h ../..//../sonLib/lib/ x86_64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -I inc -I../..//../sonLib/lib -o ../..//../sonLib/bin/3EdgeTests tests/*.c ../..//../sonLib/lib/3EdgeConnected.a ../..//../sonLib/lib/sonLib.a ../..//../sonLib/lib/cuTest.a -lz -lm make[5]: Leaving directory '/<>/deps/pinchesAndCacti/externalTools/threeEdgeConnected' make[4]: Leaving directory '/<>/deps/pinchesAndCacti/externalTools' x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -I inc -I .//../sonLib/lib/ -c impl/*.c ar rc stPinchesAndCacti.a *.o ranlib stPinchesAndCacti.a rm *.o mv stPinchesAndCacti.a .//../sonLib/lib/ cp inc/*.h .//../sonLib/lib/ x86_64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -Wl,-z,relro -Wl,-z,now -I inc -I impl -I.//../sonLib/lib -o .//../sonLib/bin/stPinchesAndCactiTests tests/*.c impl/*.c .//../sonLib/lib/sonLib.a .//../sonLib/lib/cuTest.a -lz -lm .//../sonLib/lib/3EdgeConnected.a make[3]: Leaving directory '/<>/deps/pinchesAndCacti' . ./source_me.sh && cd deps/sublinear-Li-Stephens && make clean && INCLUDE_FLAGS="-I/<>/include" make libs && cp lib/libsublinearLS.a /<>/lib/ && mkdir -p /<>/include/sublinearLS && cp src/*.hpp /<>/include/sublinearLS/ make[3]: Entering directory '/<>/deps/sublinear-Li-Stephens' rm -f /<>/deps/sublinear-Li-Stephens/bin/* /<>/deps/sublinear-Li-Stephens/obj/*.o /<>/deps/sublinear-Li-Stephens/obj/test/*.o /<>/deps/sublinear-Li-Stephens/lib/* make[3]: Leaving directory '/<>/deps/sublinear-Li-Stephens' make[3]: Entering directory '/<>/deps/sublinear-Li-Stephens' if [ ! -d /<>/deps/sublinear-Li-Stephens/obj ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/obj; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/obj/test ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/obj/test; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/bin ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/bin; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/lib ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/lib; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/deps ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/deps; fi x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/math.cpp -o /<>/deps/sublinear-Li-Stephens/obj/math.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/reference.cpp -o /<>/deps/sublinear-Li-Stephens/obj/reference.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/probability.cpp -o /<>/deps/sublinear-Li-Stephens/obj/probability.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/input_haplotype.cpp -o /<>/deps/sublinear-Li-Stephens/obj/input_haplotype.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/delay_multiplier.cpp -o /<>/deps/sublinear-Li-Stephens/obj/delay_multiplier.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/DP_map.cpp -o /<>/deps/sublinear-Li-Stephens/obj/DP_map.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/penalty_set.cpp -o /<>/deps/sublinear-Li-Stephens/obj/penalty_set.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++11 -g -Wno-error=return-type -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/allele.cpp -o /<>/deps/sublinear-Li-Stephens/obj/allele.o /<>/deps/sublinear-Li-Stephens/src/allele.cpp: In function ‘char allele::to_char(alleleValue)’: /<>/deps/sublinear-Li-Stephens/src/allele.cpp:20:1: warning: control reaches end of non-void function [-Wreturn-type] 20 | } | ^ x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/row_set.cpp -o /<>/deps/sublinear-Li-Stephens/obj/row_set.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++11 -g -Wno-error=return-type -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_node.o /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp: In member function ‘size_t haplotypeStateNode::node_to_child_index(const haplotypeStateNode*) const’: /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp:96:1: warning: control reaches end of non-void function [-Wreturn-type] 96 | } | ^ x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_state_tree.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_tree.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_manager.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_manager.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/set_of_extensions.cpp -o /<>/deps/sublinear-Li-Stephens/obj/set_of_extensions.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/reference_sequence.cpp -o /<>/deps/sublinear-Li-Stephens/obj/reference_sequence.o ar rc /<>/deps/sublinear-Li-Stephens/lib/libsublinearLS.a /<>/deps/sublinear-Li-Stephens/obj/math.o /<>/deps/sublinear-Li-Stephens/obj/reference.o /<>/deps/sublinear-Li-Stephens/obj/probability.o /<>/deps/sublinear-Li-Stephens/obj/input_haplotype.o /<>/deps/sublinear-Li-Stephens/obj/delay_multiplier.o /<>/deps/sublinear-Li-Stephens/obj/DP_map.o /<>/deps/sublinear-Li-Stephens/obj/penalty_set.o /<>/deps/sublinear-Li-Stephens/obj/allele.o /<>/deps/sublinear-Li-Stephens/obj/row_set.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_node.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_tree.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_manager.o /<>/deps/sublinear-Li-Stephens/obj/set_of_extensions.o /<>/deps/sublinear-Li-Stephens/obj/reference_sequence.o ranlib /<>/deps/sublinear-Li-Stephens/lib/libsublinearLS.a make[3]: Leaving directory '/<>/deps/sublinear-Li-Stephens' . ./source_me.sh && cd deps/structures && make clean && make lib/libstructures.a && cp lib/libstructures.a /<>/lib/ && cp -r src/include/structures /<>/include/ make[3]: Entering directory '/<>/deps/structures' if [ ! -d bin ]; then mkdir -p bin; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -d lib ]; then mkdir -p lib; fi find bin obj lib -type f -delete make[3]: Leaving directory '/<>/deps/structures' make[3]: Entering directory '/<>/deps/structures' if [ ! -d bin ]; then mkdir -p bin; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -d lib ]; then mkdir -p lib; fi x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -c src/union_find.cpp -o obj/union_find.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -c src/suffix_tree.cpp -o obj/suffix_tree.o x86_64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -c src/stable_double.cpp -o obj/stable_double.o rm -f lib/libstructures.a ar rs lib/libstructures.a obj/union_find.o obj/suffix_tree.o obj/stable_double.o ar: creating lib/libstructures.a make[3]: Leaving directory '/<>/deps/structures' rm -f lib/cleaned_old_protobuf* rm -f lib/libproto* lib/pkgconfig/protobuf* bin/protoc rm -Rf include/google/protobuf deps/protobuf touch lib/cleaned_old_protobuf_v003 rm -f /<>/include/vg.pb.h /<>/include/vg/vg.pb.h rm -Rf /<>/include/vg/io/ . ./source_me.sh && export CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp" && export LDFLAGS="-Wl,-z,relro -Wl,-z,now -L/<>/lib" && cd deps/libvgio && rm -Rf CMakeCache.txt CMakeFiles *.cmake install_manifest.txt *.pb.cc *.pb.h *.a && rm -rf build-vg && mkdir build-vg && cd build-vg && PKG_CONFIG_PATH=/<>/lib/pkgconfig: cmake -DCMAKE_CXX_STANDARD=14 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_PREFIX_PATH="/usr;/" -DCMAKE_INSTALL_PREFIX=/<> -DCMAKE_INSTALL_LIBDIR=lib .. && make clean && VERBOSE=1 make && make install -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") Building libvgio for C++ 14 -- Found PkgConfig: /usr/bin/x86_64-linux-gnu-pkg-config (found version "1.8.1") -- Could NOT find Protobuf (missing: Protobuf_DIR) No installed Protobuf has registered itself with CMake. -- Found Protobuf: /usr/lib/x86_64-linux-gnu/libprotobuf.so (found version "3.21.12") Found Protobuf using FindProtobuf.cmake -- Found Threads: TRUE Using real Threads library -- Checking for module 'htslib' -- Found htslib, version 1.21 -- Checking for module 'jansson' -- Found jansson, version 2.14 Using installed libhandlegraph -- Configuring done (2.6s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/libvgio/build-vg make[3]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/Makefile2 clean make[4]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/link_target.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/vgio.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/vgio_static.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/test_libvgio.dir/build.make CMakeFiles/test_libvgio.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/test_libvgio.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make[4]: Leaving directory '/<>/deps/libvgio/build-vg' make[3]: Leaving directory '/<>/deps/libvgio/build-vg' make[3]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -S/<>/deps/libvgio -B/<>/deps/libvgio/build-vg --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles /<>/deps/libvgio/build-vg//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/link_target.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E create_symlink . vg make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 0%] Built target link_target make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 2%] Running cpp protocol buffer compiler on deps/vg.proto /usr/bin/protoc --cpp_out :/<>/deps/libvgio/build-vg -I /<>/deps/libvgio/deps /<>/deps/libvgio/deps/vg.proto cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 5%] Building CXX object CMakeFiles/vgio.dir/vg.pb.cc.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/vg.pb.cc.o -MF CMakeFiles/vgio.dir/vg.pb.cc.o.d -o CMakeFiles/vgio.dir/vg.pb.cc.o -c /<>/deps/libvgio/build-vg/vg.pb.cc [ 8%] Building CXX object CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o -MF CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o.d -o CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o -c /<>/deps/libvgio/src/alignment_emitter.cpp [ 11%] Building CXX object CMakeFiles/vgio.dir/src/alignment_io.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/alignment_io.cpp.o -MF CMakeFiles/vgio.dir/src/alignment_io.cpp.o.d -o CMakeFiles/vgio.dir/src/alignment_io.cpp.o -c /<>/deps/libvgio/src/alignment_io.cpp [ 14%] Building CXX object CMakeFiles/vgio.dir/src/basic_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/basic_stream.cpp.o -MF CMakeFiles/vgio.dir/src/basic_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/basic_stream.cpp.o -c /<>/deps/libvgio/src/basic_stream.cpp [ 17%] Building CXX object CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o -MF CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_input_stream.cpp [ 20%] Building CXX object CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o -MF CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_output_stream.cpp [ 23%] Building CXX object CMakeFiles/vgio.dir/src/edit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/edit.cpp.o -MF CMakeFiles/vgio.dir/src/edit.cpp.o.d -o CMakeFiles/vgio.dir/src/edit.cpp.o -c /<>/deps/libvgio/src/edit.cpp [ 26%] Building CXX object CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o -MF CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o.d -o CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o -c /<>/deps/libvgio/src/hfile_cppstream.cpp [ 29%] Building CXX object CMakeFiles/vgio.dir/src/json2pb.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/json2pb.cpp.o -MF CMakeFiles/vgio.dir/src/json2pb.cpp.o.d -o CMakeFiles/vgio.dir/src/json2pb.cpp.o -c /<>/deps/libvgio/src/json2pb.cpp [ 32%] Building CXX object CMakeFiles/vgio.dir/src/message_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/message_emitter.cpp.o -MF CMakeFiles/vgio.dir/src/message_emitter.cpp.o.d -o CMakeFiles/vgio.dir/src/message_emitter.cpp.o -c /<>/deps/libvgio/src/message_emitter.cpp [ 35%] Building CXX object CMakeFiles/vgio.dir/src/message_iterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/message_iterator.cpp.o -MF CMakeFiles/vgio.dir/src/message_iterator.cpp.o.d -o CMakeFiles/vgio.dir/src/message_iterator.cpp.o -c /<>/deps/libvgio/src/message_iterator.cpp [ 38%] Building CXX object CMakeFiles/vgio.dir/src/registry.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/registry.cpp.o -MF CMakeFiles/vgio.dir/src/registry.cpp.o.d -o CMakeFiles/vgio.dir/src/registry.cpp.o -c /<>/deps/libvgio/src/registry.cpp [ 41%] Building CXX object CMakeFiles/vgio.dir/src/stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/stream.cpp.o -MF CMakeFiles/vgio.dir/src/stream.cpp.o.d -o CMakeFiles/vgio.dir/src/stream.cpp.o -c /<>/deps/libvgio/src/stream.cpp [ 44%] Building CXX object CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o -MF CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o.d -o CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o -c /<>/deps/libvgio/src/stream_multiplexer.cpp [ 47%] Building CXX object CMakeFiles/vgio.dir/src/vpkg.cpp.o /usr/bin/x86_64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/vpkg.cpp.o -MF CMakeFiles/vgio.dir/src/vpkg.cpp.o.d -o CMakeFiles/vgio.dir/src/vpkg.cpp.o -c /<>/deps/libvgio/src/vpkg.cpp [ 50%] Linking CXX shared library libvgio.so /usr/bin/cmake -E cmake_link_script CMakeFiles/vgio.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -Wl,--dependency-file=CMakeFiles/vgio.dir/link.d -Wl,-z,relro -Wl,-z,now -L/<>/lib -shared -Wl,-soname,libvgio.so -o libvgio.so CMakeFiles/vgio.dir/vg.pb.cc.o CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o CMakeFiles/vgio.dir/src/alignment_io.cpp.o CMakeFiles/vgio.dir/src/basic_stream.cpp.o CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o CMakeFiles/vgio.dir/src/edit.cpp.o CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o CMakeFiles/vgio.dir/src/json2pb.cpp.o CMakeFiles/vgio.dir/src/message_emitter.cpp.o CMakeFiles/vgio.dir/src/message_iterator.cpp.o CMakeFiles/vgio.dir/src/registry.cpp.o CMakeFiles/vgio.dir/src/stream.cpp.o CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o CMakeFiles/vgio.dir/src/vpkg.cpp.o /usr/lib/x86_64-linux-gnu/libprotobuf.so -lhts -ljansson /<>/lib/libhandlegraph.so make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 50%] Built target vgio make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 52%] Building CXX object CMakeFiles/vgio_static.dir/vg.pb.cc.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/vg.pb.cc.o -MF CMakeFiles/vgio_static.dir/vg.pb.cc.o.d -o CMakeFiles/vgio_static.dir/vg.pb.cc.o -c /<>/deps/libvgio/build-vg/vg.pb.cc [ 55%] Building CXX object CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o -MF CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o.d -o CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o -c /<>/deps/libvgio/src/alignment_emitter.cpp [ 58%] Building CXX object CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o -MF CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o.d -o CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o -c /<>/deps/libvgio/src/alignment_io.cpp [ 61%] Building CXX object CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o -c /<>/deps/libvgio/src/basic_stream.cpp [ 64%] Building CXX object CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_input_stream.cpp [ 67%] Building CXX object CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_output_stream.cpp [ 70%] Building CXX object CMakeFiles/vgio_static.dir/src/edit.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/edit.cpp.o -MF CMakeFiles/vgio_static.dir/src/edit.cpp.o.d -o CMakeFiles/vgio_static.dir/src/edit.cpp.o -c /<>/deps/libvgio/src/edit.cpp [ 73%] Building CXX object CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o -MF CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o -c /<>/deps/libvgio/src/hfile_cppstream.cpp [ 76%] Building CXX object CMakeFiles/vgio_static.dir/src/json2pb.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/json2pb.cpp.o -MF CMakeFiles/vgio_static.dir/src/json2pb.cpp.o.d -o CMakeFiles/vgio_static.dir/src/json2pb.cpp.o -c /<>/deps/libvgio/src/json2pb.cpp [ 79%] Building CXX object CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o -MF CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o.d -o CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o -c /<>/deps/libvgio/src/message_emitter.cpp [ 82%] Building CXX object CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o -MF CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o.d -o CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o -c /<>/deps/libvgio/src/message_iterator.cpp [ 85%] Building CXX object CMakeFiles/vgio_static.dir/src/registry.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/registry.cpp.o -MF CMakeFiles/vgio_static.dir/src/registry.cpp.o.d -o CMakeFiles/vgio_static.dir/src/registry.cpp.o -c /<>/deps/libvgio/src/registry.cpp [ 88%] Building CXX object CMakeFiles/vgio_static.dir/src/stream.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/stream.cpp.o -c /<>/deps/libvgio/src/stream.cpp [ 91%] Building CXX object CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o -MF CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o.d -o CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o -c /<>/deps/libvgio/src/stream_multiplexer.cpp [ 94%] Building CXX object CMakeFiles/vgio_static.dir/src/vpkg.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/vpkg.cpp.o -MF CMakeFiles/vgio_static.dir/src/vpkg.cpp.o.d -o CMakeFiles/vgio_static.dir/src/vpkg.cpp.o -c /<>/deps/libvgio/src/vpkg.cpp [ 97%] Linking CXX static library libvgio.a /usr/bin/cmake -P CMakeFiles/vgio_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/vgio_static.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-ar qc libvgio.a CMakeFiles/vgio_static.dir/vg.pb.cc.o CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o CMakeFiles/vgio_static.dir/src/edit.cpp.o CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o CMakeFiles/vgio_static.dir/src/json2pb.cpp.o CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o CMakeFiles/vgio_static.dir/src/registry.cpp.o CMakeFiles/vgio_static.dir/src/stream.cpp.o CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o CMakeFiles/vgio_static.dir/src/vpkg.cpp.o /usr/bin/x86_64-linux-gnu-ranlib libvgio.a make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [100%] Built target vgio_static make[4]: Leaving directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles 0 make[3]: Leaving directory '/<>/deps/libvgio/build-vg' make[3]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -S/<>/deps/libvgio -B/<>/deps/libvgio/build-vg --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles /<>/deps/libvgio/build-vg//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/link_target.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E create_symlink . vg make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 0%] Built target link_target make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' make[5]: Nothing to be done for 'CMakeFiles/vgio.dir/build'. make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 50%] Built target vgio make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' make[5]: Nothing to be done for 'CMakeFiles/vgio_static.dir/build'. make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [100%] Built target vgio_static make[4]: Leaving directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/libvgio/build-vg' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/libvgio/build-vg' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /<>/lib/libvgio.so -- Installing: /<>/lib/libvgio.a -- Up-to-date: /<>/include -- Up-to-date: /<>/include/vg -- Installing: /<>/include/vg/io -- Installing: /<>/include/vg/io/vpkg.hpp -- Installing: /<>/include/vg/io/stream_multiplexer.hpp -- Installing: /<>/include/vg/io/stream.hpp -- Installing: /<>/include/vg/io/registry.hpp -- Installing: /<>/include/vg/io/protobuf_iterator.hpp -- Installing: /<>/include/vg/io/protobuf_emitter.hpp -- Installing: /<>/include/vg/io/message_iterator.hpp -- Installing: /<>/include/vg/io/message_emitter.hpp -- Installing: /<>/include/vg/io/loader.hpp -- Installing: /<>/include/vg/io/json2pb.h -- Installing: /<>/include/vg/io/hfile_internal.hpp -- Installing: /<>/include/vg/io/hfile_cppstream.hpp -- Installing: /<>/include/vg/io/gafkluge.hpp -- Installing: /<>/include/vg/io/fdstream.hpp -- Installing: /<>/include/vg/io/edit.hpp -- Installing: /<>/include/vg/io/blocked_gzip_output_stream.hpp -- Installing: /<>/include/vg/io/blocked_gzip_input_stream.hpp -- Installing: /<>/include/vg/io/basic_stream.hpp -- Installing: /<>/include/vg/io/alignment_io.hpp -- Installing: /<>/include/vg/io/alignment_emitter.hpp -- Installing: /<>/include/vg/vg.pb.h -- Installing: /<>/lib/cmake/VGio/VGioTargets.cmake -- Installing: /<>/lib/cmake/VGio/VGioTargets-noconfig.cmake -- Installing: /<>/lib/cmake/VGio/VGioConfig.cmake -- Installing: /<>/lib/cmake/VGio/VGioConfigVersion.cmake make[3]: Leaving directory '/<>/deps/libvgio/build-vg' rm -Rf include/dynamic.hpp include/dynamic # annoyingly doesn't have an install option on the cmake, so we manually move their external dependency headers cd /<>/deps/DYNAMIC && rm -Rf build && mkdir -p build && cd build && export CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp" && cmake -DCMAKE_VERBOSE_MAKEFILE=ON .. && make CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Setting build type to 'Release' as none was specified. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Building in Release mode -- Configuring done (1.6s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/DYNAMIC/build make[3]: Entering directory '/<>/deps/DYNAMIC/build' /usr/bin/cmake -S/<>/deps/DYNAMIC -B/<>/deps/DYNAMIC/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/DYNAMIC/build/CMakeFiles /<>/deps/DYNAMIC/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/DYNAMIC/build' make -f CMakeFiles/debug.dir/build.make CMakeFiles/debug.dir/depend make[5]: Entering directory '/<>/deps/DYNAMIC/build' cd /<>/deps/DYNAMIC/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/DYNAMIC /<>/deps/DYNAMIC /<>/deps/DYNAMIC/build /<>/deps/DYNAMIC/build /<>/deps/DYNAMIC/build/CMakeFiles/debug.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/DYNAMIC/build' make -f CMakeFiles/debug.dir/build.make CMakeFiles/debug.dir/build make[5]: Entering directory '/<>/deps/DYNAMIC/build' [ 6%] Building CXX object CMakeFiles/debug.dir/debug.cpp.o /usr/bin/x86_64-linux-gnu-g++ -I/<>/deps/DYNAMIC/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -msse3 -fopenmp --std=c++11 -O3 -DNDEBUG -ggdb -Ofast -fstrict-aliasing -DNDEBUG -march=native -MD -MT CMakeFiles/debug.dir/debug.cpp.o -MF CMakeFiles/debug.dir/debug.cpp.o.d -o CMakeFiles/debug.dir/debug.cpp.o -c /<>/deps/DYNAMIC/debug.cpp cc1plus: error: bad value ‘native’ for ‘-march=’ switch cc1plus: note: valid arguments to ‘-march=’ switch are: nocona core2 nehalem corei7 westmere sandybridge corei7-avx ivybridge core-avx-i haswell core-avx2 broadwell skylake skylake-avx512 cannonlake icelake-client rocketlake icelake-server cascadelake tigerlake cooperlake sapphirerapids emeraldrapids alderlake raptorlake meteorlake graniterapids graniterapids-d arrowlake arrowlake-s lunarlake pantherlake bonnell atom silvermont slm goldmont goldmont-plus tremont gracemont sierraforest grandridge clearwaterforest knl knm x86-64 x86-64-v2 x86-64-v3 x86-64-v4 eden-x2 nano nano-1000 nano-2000 nano-3000 nano-x2 eden-x4 nano-x4 lujiazui yongfeng k8 k8-sse3 opteron opteron-sse3 athlon64 athlon64-sse3 athlon-fx amdfam10 barcelona bdver1 bdver2 bdver3 bdver4 znver1 znver2 znver3 znver4 znver5 btver1 btver2 make[5]: *** [CMakeFiles/debug.dir/build.make:82: CMakeFiles/debug.dir/debug.cpp.o] Error 1 make[5]: Leaving directory '/<>/deps/DYNAMIC/build' make[4]: *** [CMakeFiles/Makefile2:111: CMakeFiles/debug.dir/all] Error 2 make[4]: Leaving directory '/<>/deps/DYNAMIC/build' make[3]: *** [Makefile:94: all] Error 2 make[3]: Leaving directory '/<>/deps/DYNAMIC/build' make[2]: *** [Makefile:607: include/dynamic/dynamic.hpp] Error 2 make[2]: Leaving directory '/<>' dh_auto_build: error: make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc SFX=-sse3 all test/build_graph bin/shuf returned exit code 2 make[1]: *** [debian/rules:41: override_dh_auto_build-arch] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:22: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2025-07-02T19:56:54Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ ------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 9918 Distribution: unstable Fail-Stage: build Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 118 Job: vg_1.59.0+ds-0.1 Machine Architecture: arm64 Package: vg Package-Time: 10083 Source-Version: 1.59.0+ds-0.1 Space: n/a Status: attempted Version: 1.59.0+ds-0.1 -------------------------------------------------------------------------------- Finished at 2025-07-02T19:56:54Z Build needed 02:48:03, no disk space