sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | vg 1.59.0+ds-0.1 (arm64) Sat, 21 Dec 2024 19:45:04 +0000 | +==============================================================================+ Package: vg Version: 1.59.0+ds-0.1 Source Version: 1.59.0+ds-0.1 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-5d36a604-2436-48ed-a1ed-edfe2b81a5ed' with '<>' I: NOTICE: Log filtering will replace 'build/vg-gTPizJ/resolver-jhAvfn' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [202 kB] Get:2 http://localhost:3142/debian unstable/non-free-firmware Sources [6864 B] Get:3 http://localhost:3142/debian unstable/non-free Sources [83.2 kB] Get:4 http://localhost:3142/debian unstable/main Sources [11.0 MB] Get:5 http://localhost:3142/debian unstable/contrib Sources [62.8 kB] Get:6 http://localhost:3142/debian unstable/main arm64 Packages [10.0 MB] Get:7 http://localhost:3142/debian unstable/main amd64 Packages [10.1 MB] Fetched 31.5 MB in 3s (11.5 MB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt base-files base-passwd bash binutils binutils-common binutils-x86-64-linux-gnu bsdutils coreutils cpp-14 cpp-14-x86-64-linux-gnu debianutils e2fsprogs g++-14 g++-14-x86-64-linux-gnu gcc-14 gcc-14-base gcc-14-x86-64-linux-gnu gpgv gzip libacl1 libapt-pkg6.0t64 libasan8 libatomic1 libaudit-common libaudit1 libbinutils libblkid1 libc-bin libc-dev-bin libc6 libc6-dev libcap-ng0 libcap2 libcc1-0 libcom-err2 libctf-nobfd0 libctf0 libdebconfclient0 libext2fs2t64 libgcc-14-dev libgcc-s1 libgmp10 libgnutls30t64 libgomp1 libgpg-error0 libgprofng0 libhogweed6t64 libhwasan0 libidn2-0 libitm1 libjansson4 liblsan0 liblz4-1 liblzma5 libmd0 libmount1 libmpc3 libmpfr6 libnettle8t64 libp11-kit0 libpam-modules libpam-modules-bin libpam0g libpcre2-8-0 libperl5.40 libquadmath0 libseccomp2 libselinux1 libsemanage2 libsframe1 libsmartcols1 libss2 libssl3t64 libstdc++-14-dev libstdc++6 libsystemd0 libtasn1-6 libtinfo6 libtsan2 libubsan1 libudev1 libunistring5 libuuid1 libxxhash0 libzstd1 linux-libc-dev login login.defs logsave make mount ncurses-bin openssl-provider-legacy passwd perl perl-base perl-modules-5.40 sysvinit-utils tar tzdata util-linux xz-utils zlib1g 104 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 108 MB of archives. After this operation, 686 kB of additional disk space will be used. Get:1 http://localhost:3142/debian unstable/main amd64 libc6-dev amd64 2.40-4 [1954 kB] Get:2 http://localhost:3142/debian unstable/main amd64 libc-dev-bin amd64 2.40-4 [52.0 kB] Get:3 http://localhost:3142/debian unstable/main amd64 linux-libc-dev all 6.12.6-1 [2478 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libcc1-0 amd64 14.2.0-11 [42.9 kB] Get:5 http://localhost:3142/debian unstable/main amd64 gcc-14-base amd64 14.2.0-11 [48.0 kB] Get:6 http://localhost:3142/debian unstable/main amd64 libgcc-s1 amd64 14.2.0-11 [72.7 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libgomp1 amd64 14.2.0-11 [137 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libitm1 amd64 14.2.0-11 [26.0 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libatomic1 amd64 14.2.0-11 [9284 B] Get:10 http://localhost:3142/debian unstable/main amd64 libasan8 amd64 14.2.0-11 [2728 kB] Get:11 http://localhost:3142/debian unstable/main amd64 liblsan0 amd64 14.2.0-11 [1205 kB] Get:12 http://localhost:3142/debian unstable/main amd64 libtsan2 amd64 14.2.0-11 [2461 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libubsan1 amd64 14.2.0-11 [1075 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libhwasan0 amd64 14.2.0-11 [1489 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libquadmath0 amd64 14.2.0-11 [146 kB] Get:16 http://localhost:3142/debian unstable/main amd64 gcc-14 amd64 14.2.0-11 [534 kB] Get:17 http://localhost:3142/debian unstable/main amd64 g++-14 amd64 14.2.0-11 [20.4 kB] Get:18 http://localhost:3142/debian unstable/main amd64 g++-14-x86-64-linux-gnu amd64 14.2.0-11 [12.1 MB] Get:19 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev amd64 14.2.0-11 [2373 kB] Get:20 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev amd64 14.2.0-11 [2673 kB] Get:21 http://localhost:3142/debian unstable/main amd64 gcc-14-x86-64-linux-gnu amd64 14.2.0-11 [21.4 MB] Get:22 http://localhost:3142/debian unstable/main amd64 cpp-14-x86-64-linux-gnu amd64 14.2.0-11 [11.0 MB] Get:23 http://localhost:3142/debian unstable/main amd64 cpp-14 amd64 14.2.0-11 [1284 B] Get:24 http://localhost:3142/debian unstable/main amd64 libstdc++6 amd64 14.2.0-11 [713 kB] Get:25 http://localhost:3142/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg+really1.3.1-1+b1 [88.9 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libgprofng0 amd64 2.43.50.20241221-1 [809 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libctf0 amd64 2.43.50.20241221-1 [88.5 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libctf-nobfd0 amd64 2.43.50.20241221-1 [155 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libjansson4 amd64 2.14-2+b3 [39.8 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libsframe1 amd64 2.43.50.20241221-1 [77.5 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libzstd1 amd64 1.5.6+dfsg-1+b1 [300 kB] Get:32 http://localhost:3142/debian 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5.2.37-1 [1501 kB] Get:43 http://localhost:3142/debian unstable/main amd64 bsdutils amd64 1:2.40.2-12 [106 kB] Get:44 http://localhost:3142/debian unstable/main amd64 coreutils amd64 9.5-1+b1 [2922 kB] Get:45 http://localhost:3142/debian unstable/main amd64 gzip amd64 1.12-1.2 [134 kB] Get:46 http://localhost:3142/debian unstable/main amd64 ncurses-bin amd64 6.5-2+b1 [434 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libperl5.40 amd64 5.40.0-8 [4320 kB] Get:48 http://localhost:3142/debian unstable/main amd64 perl amd64 5.40.0-8 [267 kB] Get:49 http://localhost:3142/debian unstable/main amd64 perl-base amd64 5.40.0-8 [1675 kB] Get:50 http://localhost:3142/debian unstable/main amd64 perl-modules-5.40 all 5.40.0-8 [3015 kB] Get:51 http://localhost:3142/debian unstable/main amd64 tar amd64 1.35+dfsg-3.1 [815 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libuuid1 amd64 2.40.2-12 [36.0 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libblkid1 amd64 2.40.2-12 [168 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libmount1 amd64 2.40.2-12 [199 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libsmartcols1 amd64 2.40.2-12 [139 kB] Get:56 http://localhost:3142/debian unstable/main amd64 util-linux amd64 2.40.2-12 [1209 kB] Get:57 http://localhost:3142/debian unstable/main amd64 mount amd64 2.40.2-12 [155 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libpcre2-8-0 amd64 10.44-5 [275 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libselinux1 amd64 3.7-3+b1 [77.0 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libxxhash0 amd64 0.8.2-2+b2 [26.6 kB] Get:61 http://localhost:3142/debian unstable/main amd64 liblz4-1 amd64 1.9.4-3+b1 [60.3 kB] Get:62 http://localhost:3142/debian unstable/main amd64 liblzma5 amd64 5.6.3-1+b1 [272 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libcap2 amd64 1:2.66-5+b1 [27.8 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libsystemd0 amd64 257.1-3 [449 kB] Get:65 http://localhost:3142/debian unstable/main amd64 libudev1 amd64 257.1-3 [148 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libapt-pkg6.0t64 amd64 2.9.18 [1113 kB] Get:67 http://localhost:3142/debian unstable/main amd64 libdebconfclient0 amd64 0.274 [10.1 kB] Get:68 http://localhost:3142/debian unstable/main amd64 base-passwd amd64 3.6.5 [53.1 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.51-2 [82.1 kB] Get:70 http://localhost:3142/debian unstable/main amd64 gpgv amd64 2.2.45-2 [219 kB] Get:71 http://localhost:3142/debian unstable/main amd64 libnettle8t64 amd64 3.10-1+b1 [305 kB] Get:72 http://localhost:3142/debian unstable/main amd64 libhogweed6t64 amd64 3.10-1+b1 [335 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.7-2+b1 [129 kB] Get:75 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-2+b1 [429 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.19.0-3+b3 [49.5 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.8-2 [1454 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libseccomp2 amd64 2.5.5-2 [47.8 kB] Get:79 http://localhost:3142/debian unstable/main amd64 apt amd64 2.9.18 [1370 kB] Get:80 http://localhost:3142/debian unstable/main amd64 libc-bin amd64 2.40-4 [626 kB] Get:81 http://localhost:3142/debian unstable/main amd64 sysvinit-utils amd64 3.11-1 [33.1 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libaudit-common all 1:4.0.2-2 [12.7 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libcap-ng0 amd64 0.8.5-4 [17.3 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libaudit1 amd64 1:4.0.2-2 [54.9 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libpam0g amd64 1.5.3-7+b1 [68.3 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libpam-modules-bin amd64 1.5.3-7+b1 [54.1 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libpam-modules amd64 1.5.3-7+b1 [267 kB] Get:88 http://localhost:3142/debian unstable/main amd64 logsave amd64 1.47.2~rc1-2 [23.6 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libext2fs2t64 amd64 1.47.2~rc1-2 [211 kB] Get:90 http://localhost:3142/debian unstable/main amd64 e2fsprogs amd64 1.47.2~rc1-2 [588 kB] Get:91 http://localhost:3142/debian unstable/main amd64 login amd64 1:4.16.0-2+really2.40.2-12 [81.8 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libacl1 amd64 2.3.2-2+b1 [32.9 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libmd0 amd64 1.1.0-2+b1 [36.3 kB] Get:94 http://localhost:3142/debian unstable/main amd64 openssl-provider-legacy amd64 3.3.2-2 [298 kB] Get:95 http://localhost:3142/debian unstable/main amd64 libssl3t64 amd64 3.3.2-2 [2271 kB] Get:96 http://localhost:3142/debian unstable/main amd64 libtinfo6 amd64 6.5-2+b1 [344 kB] Get:97 http://localhost:3142/debian unstable/main amd64 login.defs all 1:4.16.0-7 [185 kB] Get:98 http://localhost:3142/debian unstable/main amd64 libsemanage2 amd64 3.7-2+b1 [91.2 kB] Get:99 http://localhost:3142/debian unstable/main amd64 passwd amd64 1:4.16.0-7 [1233 kB] Get:100 http://localhost:3142/debian unstable/main amd64 tzdata all 2024b-4 [256 kB] Get:101 http://localhost:3142/debian unstable/main amd64 xz-utils amd64 5.6.3-1+b1 [542 kB] Get:102 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2~rc1-2 [23.8 kB] Get:103 http://localhost:3142/debian unstable/main amd64 libss2 amd64 1.47.2~rc1-2 [28.4 kB] Get:104 http://localhost:3142/debian unstable/main amd64 make amd64 4.4.1-1 [463 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 108 MB in 1s (198 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13027 files and directories currently installed.) Preparing to unpack .../libgnutls30t64_3.8.8-2_amd64.deb ... Unpacking libgnutls30t64:amd64 (3.8.8-2) over (3.8.6-2) ... Setting up libgnutls30t64:amd64 (3.8.8-2) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13018 files and directories currently installed.) Preparing to unpack .../libpam-modules-bin_1.5.3-7+b1_amd64.deb ... Unpacking libpam-modules-bin (1.5.3-7+b1) over (1.5.3-7) ... Setting up libpam-modules-bin (1.5.3-7+b1) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13020 files and directories currently installed.) Preparing to unpack .../logsave_1.47.2~rc1-2_amd64.deb ... Unpacking logsave (1.47.2~rc1-2) over (1.47.1-1) ... Preparing to unpack .../libext2fs2t64_1.47.2~rc1-2_amd64.deb ... Leaving 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2 to /lib/x86_64-linux-gnu/libe2p.so.2.usr-is-merged by libext2fs2t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libe2p.so.2.3 to /lib/x86_64-linux-gnu/libe2p.so.2.3.usr-is-merged by libext2fs2t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2 to /lib/x86_64-linux-gnu/libext2fs.so.2.usr-is-merged by libext2fs2t64' Leaving 'diversion of /lib/x86_64-linux-gnu/libext2fs.so.2.4 to /lib/x86_64-linux-gnu/libext2fs.so.2.4.usr-is-merged by libext2fs2t64' Unpacking libext2fs2t64:amd64 (1.47.2~rc1-2) over (1.47.1-1) ... Setting up libext2fs2t64:amd64 (1.47.2~rc1-2) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13020 files and directories currently installed.) Preparing to unpack .../e2fsprogs_1.47.2~rc1-2_amd64.deb ... Unpacking e2fsprogs (1.47.2~rc1-2) over (1.47.1-1) ... Preparing to unpack .../login_1%3a4.16.0-2+really2.40.2-12_amd64.deb ... Unpacking login (1:4.16.0-2+really2.40.2-12) over (1:4.16.0-2+really2.40.2-9) ... Preparing to unpack .../libacl1_2.3.2-2+b1_amd64.deb ... Unpacking libacl1:amd64 (2.3.2-2+b1) over (2.3.2-2) ... Setting up libacl1:amd64 (2.3.2-2+b1) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 13021 files and directories currently installed.) Preparing to unpack .../libmd0_1.1.0-2+b1_amd64.deb ... Unpacking libmd0:amd64 (1.1.0-2+b1) over (1.1.0-2) ... Setting up libmd0:amd64 (1.1.0-2+b1) ... (Reading database ... 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Unpacking tzdata (2024b-4) over (2024b-3) ... Preparing to unpack .../4-xz-utils_5.6.3-1+b1_amd64.deb ... Unpacking xz-utils (5.6.3-1+b1) over (5.6.2-2) ... Preparing to unpack .../5-libcom-err2_1.47.2~rc1-2_amd64.deb ... Unpacking libcom-err2:amd64 (1.47.2~rc1-2) over (1.47.1-1) ... Preparing to unpack .../6-libss2_1.47.2~rc1-2_amd64.deb ... Unpacking libss2:amd64 (1.47.2~rc1-2) over (1.47.1-1) ... Preparing to unpack .../7-make_4.4.1-1_amd64.deb ... Unpacking make (4.4.1-1) over (4.3-4.1) ... Setting up login.defs (1:4.16.0-7) ... Installing new version of config file /etc/login.defs ... Setting up binutils-common:amd64 (2.43.50.20241221-1) ... Setting up linux-libc-dev (6.12.6-1) ... Setting up libctf-nobfd0:amd64 (2.43.50.20241221-1) ... Setting up libcom-err2:amd64 (1.47.2~rc1-2) ... Setting up libgomp1:amd64 (14.2.0-11) ... Setting up libsframe1:amd64 (2.43.50.20241221-1) ... Setting up libjansson4:amd64 (2.14-2+b3) ... Setting up tzdata (2024b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Sat Dec 21 19:45:21 UTC 2024. Universal Time is now: Sat Dec 21 19:45:21 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up make (4.4.1-1) ... Setting up libmpfr6:amd64 (4.2.1-1+b2) ... Setting up xz-utils (5.6.3-1+b1) ... Setting up libquadmath0:amd64 (14.2.0-11) ... Setting up libmpc3:amd64 (1.3.1-1+b3) ... Setting up libatomic1:amd64 (14.2.0-11) ... Setting up libss2:amd64 (1.47.2~rc1-2) ... Setting up cpp-14-x86-64-linux-gnu (14.2.0-11) ... Setting up logsave (1.47.2~rc1-2) ... Setting up cpp-14 (14.2.0-11) ... Setting up libubsan1:amd64 (14.2.0-11) ... Setting up mount (2.40.2-12) ... Setting up perl-modules-5.40 (5.40.0-8) ... Setting up libhwasan0:amd64 (14.2.0-11) ... Setting up libasan8:amd64 (14.2.0-11) ... Setting up libsemanage2:amd64 (3.7-2+b1) ... Setting up libtsan2:amd64 (14.2.0-11) ... Setting up libbinutils:amd64 (2.43.50.20241221-1) ... Setting up libc-dev-bin (2.40-4) ... Setting up libcc1-0:amd64 (14.2.0-11) ... Setting up liblsan0:amd64 (14.2.0-11) ... Setting up libitm1:amd64 (14.2.0-11) ... Setting up login (1:4.16.0-2+really2.40.2-12) ... Setting up libctf0:amd64 (2.43.50.20241221-1) ... Setting up e2fsprogs (1.47.2~rc1-2) ... Setting up libperl5.40:amd64 (5.40.0-8) ... Setting up perl (5.40.0-8) ... Setting up libgprofng0:amd64 (2.43.50.20241221-1) ... Setting up passwd (1:4.16.0-7) ... Setting up libc6-dev:amd64 (2.40-4) ... Setting up libgcc-14-dev:amd64 (14.2.0-11) ... Setting up libstdc++-14-dev:amd64 (14.2.0-11) ... Setting up binutils-x86-64-linux-gnu (2.43.50.20241221-1) ... Setting up binutils (2.43.50.20241221-1) ... Setting up gcc-14-x86-64-linux-gnu (14.2.0-11) ... Setting up gcc-14 (14.2.0-11) ... Setting up g++-14-x86-64-linux-gnu (14.2.0-11) ... Setting up g++-14 (14.2.0-11) ... Processing triggers for debianutils (5.21) ... Processing triggers for libc-bin (2.40-4) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'vg' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/vg.git Please use: git clone https://salsa.debian.org/med-team/vg.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 69.8 MB of source archives. Get:1 http://localhost:3142/debian unstable/main vg 1.59.0+ds-0.1 (dsc) [2839 B] Get:2 http://localhost:3142/debian unstable/main vg 1.59.0+ds-0.1 (tar) [69.7 MB] Get:3 http://localhost:3142/debian unstable/main vg 1.59.0+ds-0.1 (diff) [117 kB] Fetched 69.8 MB in 0s (201 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/vg-gTPizJ/vg-1.59.0+ds' with '<>' I: NOTICE: Log filtering will replace 'build/vg-gTPizJ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), bsdextrautils | bsdmainutils, zlib1g-dev, rs, libffi-dev, protobuf-compiler, libprotoc-dev, libprotobuf-dev, libjansson-dev, libbz2-dev, libtinfo6, libncurses-dev, automake, libtool, jq, unzip, librdf0-dev, cmake, pkgconf, bc, gtk-doc-tools, bison, flex, gawk, liblz4-dev, liblzma-dev, libcairo2-dev, libpixman-1-dev, libdeflate-dev, libboost-program-options-dev, libjemalloc-dev, libbackward-cpp-dev, elfutils, libdw-dev, libelf-dev, libraptor2-dev, libsparsehash-dev, rapidjson-dev, libfml-dev, libfastahack-dev, libdivsufsort-dev, libtsl-hopscotch-map-dev, libvcflib-dev (>= 1.0.1), libhts-dev, help2man, python3:any, libsimde-dev, libzstd-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), bsdextrautils, zlib1g-dev, rs, libffi-dev, protobuf-compiler, libprotoc-dev, libprotobuf-dev, libjansson-dev, libbz2-dev, libtinfo6, libncurses-dev, automake, libtool, jq, unzip, librdf0-dev, cmake, pkgconf, bc, gtk-doc-tools, bison, flex, gawk, liblz4-dev, liblzma-dev, libcairo2-dev, libpixman-1-dev, libdeflate-dev, libboost-program-options-dev, libjemalloc-dev, libbackward-cpp-dev, elfutils, libdw-dev, libelf-dev, libraptor2-dev, libsparsehash-dev, rapidjson-dev, libfml-dev, libfastahack-dev, libdivsufsort-dev, libtsl-hopscotch-map-dev, libvcflib-dev (>= 1.0.1), libhts-dev, help2man, python3:any, libsimde-dev, libzstd-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1561 B] Get:5 copy:/<>/apt_archive ./ Packages [1391 B] Fetched 3567 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev bc binutils-aarch64-linux-gnu bison bsdextrautils cmake cmake-data comerr-dev:arm64 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-exe-wrapper:arm64 crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man docbook-xml docbook-xsl dwz elfutils fakeroot file flex fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gawk gcc-14-aarch64-linux-gnu gcc-14-aarch64-linux-gnu-base gcc-14-base:arm64 gcc-14-cross-base gcc-aarch64-linux-gnu gettext gettext-base girepository-tools girepository-tools:arm64 groff-base gtk-doc-tools help2man icu-devtools intltool-debian jq krb5-multidev:arm64 libarchive-zip-perl libarchive13t64 libasan8:arm64 libasan8-arm64-cross libasm1t64 libatomic1:arm64 libatomic1-arm64-cross libbackward-cpp-dev libblkid-dev:arm64 libblkid1:arm64 libboost-program-options-dev:arm64 libboost-program-options1.83-dev:arm64 libboost-program-options1.83.0:arm64 libboost1.83-dev:arm64 libbrotli-dev:arm64 libbrotli1 libbrotli1:arm64 libbz2-1.0:arm64 libbz2-dev:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcairo-gobject2:arm64 libcairo-script-interpreter2:arm64 libcairo2:arm64 libcairo2-dev:arm64 libcom-err2:arm64 libcrypt-dev:arm64 libcrypt1:arm64 libcurl3t64-gnutls libcurl3t64-gnutls:arm64 libcurl4-gnutls-dev:arm64 libcurl4t64 libdb5.3t64:arm64 libdebhelper-perl libdebuginfod-common libdebuginfod1t64 libdeflate-dev:arm64 libdeflate0:arm64 libdisorder-dev:arm64 libdisorder0:arm64 libdivsufsort-dev:arm64 libdivsufsort3:arm64 libdw-dev:arm64 libdw1t64 libdw1t64:arm64 libelf-dev:arm64 libelf1t64 libelf1t64:arm64 libevent-2.1-7t64:arm64 libexpat1 libexpat1:arm64 libexpat1-dev:arm64 libfakeroot libfastahack-dev:arm64 libfastahack0:arm64 libffi-dev:arm64 libffi8:arm64 libfile-stripnondeterminism-perl libfml-dev:arm64 libfml0:arm64 libfontconfig-dev:arm64 libfontconfig1:arm64 libfreetype-dev:arm64 libfreetype6:arm64 libgcc-14-dev:arm64 libgcc-14-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgcrypt20:arm64 libgio-2.0-dev:arm64 libgio-2.0-dev-bin libgirepository-2.0-0 libgirepository-2.0-0:arm64 libglib2.0-0t64 libglib2.0-0t64:arm64 libglib2.0-bin libglib2.0-data libglib2.0-dev:arm64 libglib2.0-dev-bin libgmp-dev:arm64 libgmp10:arm64 libgmpxx4ldbl:arm64 libgnutls-dane0t64:arm64 libgnutls-openssl27t64:arm64 libgnutls28-dev:arm64 libgnutls30t64:arm64 libgomp1:arm64 libgomp1-arm64-cross libgpg-error0:arm64 libgssapi-krb5-2 libgssapi-krb5-2:arm64 libgssrpc4t64:arm64 libhogweed6t64:arm64 libhts-dev:arm64 libhts3t64:arm64 libhtscodecs2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libice-dev:arm64 libice6:arm64 libicu-dev:arm64 libicu72 libicu72:arm64 libidn2-0:arm64 libidn2-dev:arm64 libitm1:arm64 libitm1-arm64-cross libjansson-dev:arm64 libjansson4:arm64 libjemalloc-dev:arm64 libjemalloc2:arm64 libjq1 libjson-c5 libjsoncpp26 libk5crypto3 libk5crypto3:arm64 libkadm5clnt-mit12:arm64 libkadm5srv-mit12:arm64 libkdb5-10t64:arm64 libkeyutils1 libkeyutils1:arm64 libkrb5-3 libkrb5-3:arm64 libkrb5-dev:arm64 libkrb5support0 libkrb5support0:arm64 libldap-2.5-0 libldap-2.5-0:arm64 libldap-dev:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libltdl7:arm64 liblz4-1:arm64 liblz4-dev:arm64 liblzma-dev:arm64 liblzma5:arm64 liblzo2-2:arm64 libmagic-mgc libmagic1t64 libmhash2:arm64 libmount-dev:arm64 libmount1:arm64 libncurses-dev:arm64 libncurses6:arm64 libncursesw6 libncursesw6:arm64 libnettle8t64:arm64 libnghttp2-14 libnghttp2-14:arm64 libnghttp2-dev:arm64 libnghttp3-9 libnghttp3-9:arm64 libnghttp3-dev:arm64 libngtcp2-16 libngtcp2-16:arm64 libngtcp2-crypto-gnutls-dev:arm64 libngtcp2-crypto-gnutls8 libngtcp2-crypto-gnutls8:arm64 libngtcp2-dev:arm64 libnsl2 libonig5 libosp5 libp11-kit-dev:arm64 libp11-kit0:arm64 libpcre2-16-0:arm64 libpcre2-32-0:arm64 libpcre2-8-0:arm64 libpcre2-dev:arm64 libpcre2-posix3:arm64 libpipeline1 libpixman-1-0:arm64 libpixman-1-dev:arm64 libpkgconf3 libpng-dev:arm64 libpng16-16t64:arm64 libproc2-0 libprotobuf-dev:arm64 libprotobuf-lite32t64:arm64 libprotobuf32t64 libprotobuf32t64:arm64 libprotoc-dev:arm64 libprotoc32t64 libprotoc32t64:arm64 libpsl-dev:arm64 libpsl5t64 libpsl5t64:arm64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libraptor2-0:arm64 libraptor2-dev:arm64 librasqal3-dev:arm64 librasqal3t64:arm64 librdf0-dev:arm64 librdf0t64:arm64 libreadline8t64 librhash1 librtmp-dev:arm64 librtmp1 librtmp1:arm64 libsasl2-2 libsasl2-2:arm64 libsasl2-modules-db libsasl2-modules-db:arm64 libselinux1:arm64 libselinux1-dev:arm64 libsepol-dev:arm64 libsepol2:arm64 libsigsegv2 libsimde-dev libsm-dev:arm64 libsm6:arm64 libsmithwaterman-dev:arm64 libsmithwaterman0:arm64 libsparsehash-dev libsqlite3-0 libssh2-1-dev:arm64 libssh2-1t64 libssh2-1t64:arm64 libssl-dev:arm64 libssl3t64:arm64 libssw-dev:arm64 libssw0:arm64 libstdc++-14-dev:arm64 libstdc++-14-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsysprof-capture-4-dev:arm64 libtabixpp-dev:arm64 libtabixpp0t64:arm64 libtasn1-6:arm64 libtasn1-6-dev:arm64 libtinfo6:arm64 libtirpc-common libtirpc3t64 libtool libtsan2:arm64 libtsan2-arm64-cross libtsl-hopscotch-map-dev libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunbound8:arm64 libunistring5:arm64 libuuid1:arm64 libuv1t64 libvcflib-dev:arm64 libvcflib2:arm64 libwfa2-0:arm64 libwfa2-dev:arm64 libx11-6:arm64 libx11-data libx11-dev:arm64 libxau-dev:arm64 libxau6:arm64 libxcb-render0:arm64 libxcb-render0-dev:arm64 libxcb-shm0:arm64 libxcb-shm0-dev:arm64 libxcb1:arm64 libxcb1-dev:arm64 libxdmcp-dev:arm64 libxdmcp6:arm64 libxext-dev:arm64 libxext6:arm64 libxml2 libxml2:arm64 libxml2-dev:arm64 libxrender-dev:arm64 libxrender1:arm64 libxslt1-dev:arm64 libxslt1.1 libxslt1.1:arm64 libxxhash0:arm64 libyajl-dev:arm64 libyajl2:arm64 libzstd-dev:arm64 libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db media-types native-architecture netbase nettle-dev:arm64 opensp pkgconf pkgconf:arm64 pkgconf-bin po-debconf procps protobuf-compiler python3 python3-autocommand python3-inflect python3-jaraco.context python3-jaraco.functools python3-lxml python3-minimal python3-more-itertools python3-packaging python3-pkg-resources python3-pygments python3-typeguard python3-typing-extensions python3.12 python3.12-minimal qemu-user rapidjson-dev readline-common rs sensible-utils sgml-base sgml-data ucf unzip uuid-dev:arm64 x11-common x11proto-core-dev x11proto-dev xml-core xorg-sgml-doctools xsltproc xtrans-dev zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc bison-doc cmake-doc cmake-format elpa-cmake-mode ninja-build doc-base:arm64 gcc-14-locales cpp-14-doc cpp-doc dh-make docbook-defguide docbook-dsssl psgml dbtoepub docbook-xsl-doc-html | docbook-xsl-doc-pdf | docbook-xsl-doc-text | docbook-xsl-doc docbook-xsl-saxon fop libsaxon-java libxalan2-java libxslthl-java xalan flex-doc gcc-14-doc gawk-doc manpages-dev gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff dblatex krb5-doc:arm64 lrzip binutils-dev libdw-dev libunwind-dev libboost1.83-doc:arm64 libboost-atomic1.83-dev:arm64 libboost-chrono1.83-dev:arm64 libboost-container1.83-dev:arm64 libboost-context1.83-dev:arm64 libboost-contract1.83-dev:arm64 libboost-coroutine1.83-dev:arm64 libboost-date-time1.83-dev:arm64 libboost-exception1.83-dev:arm64 libboost-fiber1.83-dev:arm64 libboost-filesystem1.83-dev:arm64 libboost-graph-parallel1.83-dev:arm64 libboost-graph1.83-dev:arm64 libboost-iostreams1.83-dev:arm64 libboost-json1.83-dev:arm64 libboost-locale1.83-dev:arm64 libboost-log1.83-dev:arm64 libboost-math1.83-dev:arm64 libboost-mpi-python1.83-dev:arm64 libboost-mpi1.83-dev:arm64 libboost-nowide1.83-dev:arm64 libboost-numpy1.83-dev:arm64 libboost-python1.83-dev:arm64 libboost-random1.83-dev:arm64 libboost-regex1.83-dev:arm64 libboost-serialization1.83-dev:arm64 libboost-stacktrace1.83-dev:arm64 libboost-system1.83-dev:arm64 libboost-test1.83-dev:arm64 libboost-thread1.83-dev:arm64 libboost-timer1.83-dev:arm64 libboost-type-erasure1.83-dev:arm64 libboost-url1.83-dev:arm64 libboost-wave1.83-dev:arm64 libboost1.83-tools-dev:arm64 libmpfrc++-dev:arm64 libntl-dev:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 libcairo2-doc:arm64 libcurl4-doc:arm64 libidn-dev:arm64 freetype2-doc:arm64 rng-tools:arm64 gir1.2-glib-2.0-dev:arm64 libglib2.0-doc:arm64 libgdk-pixbuf2.0-bin libxml2-utils low-memory-monitor low-memory-monitor:arm64 gmp-doc:arm64 libgmp10-doc:arm64 libmpfr-dev:arm64 dns-root-data:arm64 gnutls-bin:arm64 gnutls-doc:arm64 krb5-doc krb5-user krb5-user:arm64 libice-doc:arm64 icu-doc:arm64 binutils:arm64 liblzma-doc:arm64 cryptsetup-bin:arm64 ncurses-doc:arm64 libnghttp2-doc:arm64 p11-kit-doc:arm64 raptor2-utils:arm64 libraptor2-doc:arm64 librasqal3-doc:arm64 rasqal-utils:arm64 librdf-perl:arm64 librdf-ruby:arm64 python-librdf:arm64 librdf-storage-mysql:arm64 librdf-storage-postgresql:arm64 librdf-storage-sqlite:arm64 librdf-storage-virtuoso:arm64 redland-utils:arm64 libsm-doc:arm64 libssl-doc:arm64 libstdc++-14-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk uuid-runtime:arm64 libx11-doc:arm64 libxcb-doc:arm64 libxext-doc:arm64 m4-doc apparmor less www-browser doc-base libmail-box-perl protobuf-mode-el python3-doc python3-tk python3-venv python-lxml-doc python3-setuptools python-pygments-doc ttf-bitstream-vera python3.12-venv python3.12-doc binfmt-support rapidjson-doc readline-doc sgml-base-doc perlsgml w3-recs zip Recommended packages: libfl-dev curl | wget | lynx bzip2-doc:arm64 ca-certificates ca-certificates:arm64 libarchive-cpio-perl shared-mime-info xdg-user-dirs shared-mime-info:arm64 xdg-user-dirs:arm64 libgpg-error-l10n:arm64 krb5-locales krb5-locales:arm64 libldap-common libldap-common:arm64 libgpm2:arm64 libgpm2 libpng-tools:arm64 publicsuffix publicsuffix:arm64 raptor2-utils:arm64 rasqal-utils:arm64 redland-utils:arm64 libsasl2-modules libsasl2-modules:arm64 libtasn1-doc:arm64 libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults libprotobuf-dev python3-bs4 python3-cssselect python3-html5lib qemu-user-binfmt The following NEW packages will be installed: autoconf automake autopoint autotools-dev bc binutils-aarch64-linux-gnu bison bsdextrautils cmake cmake-data comerr-dev:arm64 cpp-14-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-exe-wrapper:arm64 crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism docbook docbook-to-man docbook-xml docbook-xsl dwz elfutils fakeroot file flex fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-14-aarch64-linux-gnu g++-aarch64-linux-gnu gawk gcc-14-aarch64-linux-gnu gcc-14-aarch64-linux-gnu-base gcc-14-base:arm64 gcc-14-cross-base gcc-aarch64-linux-gnu gettext gettext-base girepository-tools girepository-tools:arm64 groff-base gtk-doc-tools help2man icu-devtools intltool-debian jq krb5-multidev:arm64 libarchive-zip-perl libarchive13t64 libasan8:arm64 libasan8-arm64-cross libasm1t64 libatomic1:arm64 libatomic1-arm64-cross libbackward-cpp-dev libblkid-dev:arm64 libblkid1:arm64 libboost-program-options-dev:arm64 libboost-program-options1.83-dev:arm64 libboost-program-options1.83.0:arm64 libboost1.83-dev:arm64 libbrotli-dev:arm64 libbrotli1 libbrotli1:arm64 libbz2-1.0:arm64 libbz2-dev:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcairo-gobject2:arm64 libcairo-script-interpreter2:arm64 libcairo2:arm64 libcairo2-dev:arm64 libcom-err2:arm64 libcrypt-dev:arm64 libcrypt1:arm64 libcurl3t64-gnutls libcurl3t64-gnutls:arm64 libcurl4-gnutls-dev:arm64 libcurl4t64 libdb5.3t64:arm64 libdebhelper-perl libdebuginfod-common libdebuginfod1t64 libdeflate-dev:arm64 libdeflate0:arm64 libdisorder-dev:arm64 libdisorder0:arm64 libdivsufsort-dev:arm64 libdivsufsort3:arm64 libdw-dev:arm64 libdw1t64 libdw1t64:arm64 libelf-dev:arm64 libelf1t64 libelf1t64:arm64 libevent-2.1-7t64:arm64 libexpat1 libexpat1:arm64 libexpat1-dev:arm64 libfakeroot libfastahack-dev:arm64 libfastahack0:arm64 libffi-dev:arm64 libffi8:arm64 libfile-stripnondeterminism-perl libfml-dev:arm64 libfml0:arm64 libfontconfig-dev:arm64 libfontconfig1:arm64 libfreetype-dev:arm64 libfreetype6:arm64 libgcc-14-dev:arm64 libgcc-14-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgcrypt20:arm64 libgio-2.0-dev:arm64 libgio-2.0-dev-bin libgirepository-2.0-0 libgirepository-2.0-0:arm64 libglib2.0-0t64 libglib2.0-0t64:arm64 libglib2.0-bin libglib2.0-data libglib2.0-dev:arm64 libglib2.0-dev-bin libgmp-dev:arm64 libgmp10:arm64 libgmpxx4ldbl:arm64 libgnutls-dane0t64:arm64 libgnutls-openssl27t64:arm64 libgnutls28-dev:arm64 libgnutls30t64:arm64 libgomp1:arm64 libgomp1-arm64-cross libgpg-error0:arm64 libgssapi-krb5-2 libgssapi-krb5-2:arm64 libgssrpc4t64:arm64 libhogweed6t64:arm64 libhts-dev:arm64 libhts3t64:arm64 libhtscodecs2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libice-dev:arm64 libice6:arm64 libicu-dev:arm64 libicu72 libicu72:arm64 libidn2-0:arm64 libidn2-dev:arm64 libitm1:arm64 libitm1-arm64-cross libjansson-dev:arm64 libjansson4:arm64 libjemalloc-dev:arm64 libjemalloc2:arm64 libjq1 libjson-c5 libjsoncpp26 libk5crypto3 libk5crypto3:arm64 libkadm5clnt-mit12:arm64 libkadm5srv-mit12:arm64 libkdb5-10t64:arm64 libkeyutils1 libkeyutils1:arm64 libkrb5-3 libkrb5-3:arm64 libkrb5-dev:arm64 libkrb5support0 libkrb5support0:arm64 libldap-2.5-0 libldap-2.5-0:arm64 libldap-dev:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libltdl7:arm64 liblz4-1:arm64 liblz4-dev:arm64 liblzma-dev:arm64 liblzma5:arm64 liblzo2-2:arm64 libmagic-mgc libmagic1t64 libmhash2:arm64 libmount-dev:arm64 libmount1:arm64 libncurses-dev:arm64 libncurses6:arm64 libncursesw6 libncursesw6:arm64 libnettle8t64:arm64 libnghttp2-14 libnghttp2-14:arm64 libnghttp2-dev:arm64 libnghttp3-9 libnghttp3-9:arm64 libnghttp3-dev:arm64 libngtcp2-16 libngtcp2-16:arm64 libngtcp2-crypto-gnutls-dev:arm64 libngtcp2-crypto-gnutls8 libngtcp2-crypto-gnutls8:arm64 libngtcp2-dev:arm64 libnsl2 libonig5 libosp5 libp11-kit-dev:arm64 libp11-kit0:arm64 libpcre2-16-0:arm64 libpcre2-32-0:arm64 libpcre2-8-0:arm64 libpcre2-dev:arm64 libpcre2-posix3:arm64 libpipeline1 libpixman-1-0:arm64 libpixman-1-dev:arm64 libpkgconf3 libpng-dev:arm64 libpng16-16t64:arm64 libproc2-0 libprotobuf-dev:arm64 libprotobuf-lite32t64:arm64 libprotobuf32t64 libprotobuf32t64:arm64 libprotoc-dev:arm64 libprotoc32t64 libprotoc32t64:arm64 libpsl-dev:arm64 libpsl5t64 libpsl5t64:arm64 libpython3-stdlib libpython3.12-minimal libpython3.12-stdlib libraptor2-0:arm64 libraptor2-dev:arm64 librasqal3-dev:arm64 librasqal3t64:arm64 librdf0-dev:arm64 librdf0t64:arm64 libreadline8t64 librhash1 librtmp-dev:arm64 librtmp1 librtmp1:arm64 libsasl2-2 libsasl2-2:arm64 libsasl2-modules-db libsasl2-modules-db:arm64 libselinux1:arm64 libselinux1-dev:arm64 libsepol-dev:arm64 libsepol2:arm64 libsigsegv2 libsimde-dev libsm-dev:arm64 libsm6:arm64 libsmithwaterman-dev:arm64 libsmithwaterman0:arm64 libsparsehash-dev libsqlite3-0 libssh2-1-dev:arm64 libssh2-1t64 libssh2-1t64:arm64 libssl-dev:arm64 libssl3t64:arm64 libssw-dev:arm64 libssw0:arm64 libstdc++-14-dev:arm64 libstdc++-14-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsysprof-capture-4-dev:arm64 libtabixpp-dev:arm64 libtabixpp0t64:arm64 libtasn1-6:arm64 libtasn1-6-dev:arm64 libtinfo6:arm64 libtirpc-common libtirpc3t64 libtool libtsan2:arm64 libtsan2-arm64-cross libtsl-hopscotch-map-dev libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunbound8:arm64 libunistring5:arm64 libuuid1:arm64 libuv1t64 libvcflib-dev:arm64 libvcflib2:arm64 libwfa2-0:arm64 libwfa2-dev:arm64 libx11-6:arm64 libx11-data libx11-dev:arm64 libxau-dev:arm64 libxau6:arm64 libxcb-render0:arm64 libxcb-render0-dev:arm64 libxcb-shm0:arm64 libxcb-shm0-dev:arm64 libxcb1:arm64 libxcb1-dev:arm64 libxdmcp-dev:arm64 libxdmcp6:arm64 libxext-dev:arm64 libxext6:arm64 libxml2 libxml2:arm64 libxml2-dev:arm64 libxrender-dev:arm64 libxrender1:arm64 libxslt1-dev:arm64 libxslt1.1 libxslt1.1:arm64 libxxhash0:arm64 libyajl-dev:arm64 libyajl2:arm64 libzstd-dev:arm64 libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db media-types native-architecture netbase nettle-dev:arm64 opensp pkgconf pkgconf:arm64 pkgconf-bin po-debconf procps protobuf-compiler python3 python3-autocommand python3-inflect python3-jaraco.context python3-jaraco.functools python3-lxml python3-minimal python3-more-itertools python3-packaging python3-pkg-resources python3-pygments python3-typeguard python3-typing-extensions python3.12 python3.12-minimal qemu-user rapidjson-dev readline-common rs sbuild-build-depends-main-dummy:arm64 sensible-utils sgml-base sgml-data ucf unzip uuid-dev:arm64 x11-common x11proto-core-dev x11proto-dev xml-core xorg-sgml-doctools xsltproc xtrans-dev zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 379 newly installed, 0 to remove and 0 not upgraded. Need to get 287 MB of archives. After this operation, 1462 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1220 B] Get:2 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:3 http://localhost:3142/debian unstable/main amd64 flex amd64 2.6.4-8.2+b3 [423 kB] Get:4 http://localhost:3142/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB] Get:5 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB] Get:6 http://localhost:3142/debian unstable/main amd64 libsigsegv2 amd64 2.14-1+b2 [34.4 kB] Get:7 http://localhost:3142/debian unstable/main amd64 gawk amd64 1:5.2.1-2+b1 [674 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5-2+b1 [136 kB] Get:9 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-6 [64.8 kB] Get:10 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-6 [879 kB] Get:11 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:12 http://localhost:3142/debian unstable/main amd64 ucf all 3.0046 [41.1 kB] Get:13 http://localhost:3142/debian unstable/main amd64 libdebuginfod-common all 0.192-4 [23.7 kB] Get:14 http://localhost:3142/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libpython3.12-minimal amd64 3.12.8-3 [817 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.6.4-1 [106 kB] Get:17 http://localhost:3142/debian unstable/main amd64 python3.12-minimal amd64 3.12.8-3 [2162 kB] Get:18 http://localhost:3142/debian unstable/main amd64 python3-minimal amd64 3.12.7-1 [26.8 kB] Get:19 http://localhost:3142/debian unstable/main amd64 media-types all 10.1.0 [26.9 kB] Get:20 http://localhost:3142/debian unstable/main amd64 netbase all 6.4 [12.8 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-3 [32.5 kB] Get:22 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-3 [79.9 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-4 [9092 B] Get:24 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-3 [324 kB] Get:25 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-3 [136 kB] Get:26 http://localhost:3142/debian unstable/main amd64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get:27 http://localhost:3142/debian unstable/main amd64 libtirpc3t64 amd64 1.3.4+ds-1.3+b1 [83.1 kB] Get:28 http://localhost:3142/debian unstable/main amd64 libnsl2 amd64 1.3.0-3+b3 [40.6 kB] Get:29 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-1 [913 kB] Get:30 http://localhost:3142/debian unstable/main amd64 libpython3.12-stdlib amd64 3.12.8-3 [1969 kB] Get:31 http://localhost:3142/debian unstable/main amd64 python3.12 amd64 3.12.8-3 [677 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libpython3-stdlib amd64 3.12.7-1 [9712 B] Get:33 http://localhost:3142/debian unstable/main amd64 python3 amd64 3.12.7-1 [27.8 kB] Get:34 http://localhost:3142/debian unstable/main amd64 sgml-base all 1.31 [15.4 kB] Get:35 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get:36 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get:37 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get:38 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.22.5-3 [200 kB] Get:39 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:40 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-6 [1184 kB] Get:41 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.2-12 [92.0 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:43 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:44 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:45 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:46 http://localhost:3142/debian unstable/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:47 http://localhost:3142/debian unstable/main amd64 autopoint all 0.22.5-3 [723 kB] Get:48 http://localhost:3142/debian unstable/main amd64 bc amd64 1.07.1-4 [103 kB] Get:49 http://localhost:3142/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.43.50.20241221-1 [4035 kB] Get:50 http://localhost:3142/debian unstable/main amd64 bison amd64 2:3.8.2+dfsg-1+b2 [1170 kB] Get:51 http://localhost:3142/debian unstable/main amd64 cmake-data all 3.31.2-1 [2267 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libicu72 amd64 72.1-5+b1 [9423 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-1.1 [349 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b6 [302 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-8 [19.6 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-8 [57.3 kB] Get:58 http://localhost:3142/debian unstable/main amd64 libldap-2.5-0 amd64 2.5.18+dfsg-3+b1 [188 kB] Get:59 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1 [75.5 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB] Get:61 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB] Get:62 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libcurl4t64 amd64 8.11.1-1 [351 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-3 [81.7 kB] Get:65 http://localhost:3142/debian unstable/main amd64 librhash1 amd64 1.4.5-1 [132 kB] Get:66 http://localhost:3142/debian unstable/main amd64 libuv1t64 amd64 1.48.0-7 [148 kB] Get:67 http://localhost:3142/debian unstable/main amd64 cmake amd64 3.31.2-1 [11.9 MB] Get:68 http://localhost:3142/debian unstable/main arm64 gcc-14-base arm64 14.2.0-11 [48.0 kB] Get:69 http://localhost:3142/debian unstable/main arm64 libgcc-s1 arm64 14.2.0-11 [54.1 kB] Get:70 http://localhost:3142/debian unstable/main arm64 libc6 arm64 2.40-4 [2457 kB] Get:71 http://localhost:3142/debian unstable/main arm64 libcrypt1 arm64 1:4.4.36-5 [91.6 kB] Get:72 http://localhost:3142/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.36-5 [122 kB] Get:73 http://localhost:3142/debian unstable/main arm64 libc6-dev arm64 2.40-4 [1591 kB] Get:74 http://localhost:3142/debian unstable/main arm64 libcom-err2 arm64 1.47.2~rc1-2 [23.7 kB] Get:75 http://localhost:3142/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2~rc1-2 [55.7 kB] Get:76 http://localhost:3142/debian unstable/main amd64 gcc-14-aarch64-linux-gnu-base amd64 14.2.0-6cross1 [47.0 kB] Get:77 http://localhost:3142/debian unstable/main amd64 cpp-14-aarch64-linux-gnu amd64 14.2.0-6cross1 [11.2 MB] Get:78 http://localhost:3142/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:14.2.0-1 [4844 B] Get:79 http://localhost:3142/debian unstable/main amd64 qemu-user amd64 1:9.2.0+ds-2 [61.1 MB] Get:80 http://localhost:3142/debian unstable/main arm64 cross-exe-wrapper arm64 0.2.3 [6528 B] Get:81 http://localhost:3142/debian unstable/main amd64 gcc-14-cross-base all 14.2.0-6cross1 [42.2 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libc6-arm64-cross all 2.40-3cross1 [1141 kB] Get:83 http://localhost:3142/debian unstable/main amd64 libgcc-s1-arm64-cross all 14.2.0-6cross1 [54.0 kB] Get:84 http://localhost:3142/debian unstable/main amd64 libgomp1-arm64-cross all 14.2.0-6cross1 [91.7 kB] Get:85 http://localhost:3142/debian unstable/main amd64 libitm1-arm64-cross all 14.2.0-6cross1 [25.9 kB] Get:86 http://localhost:3142/debian unstable/main amd64 libatomic1-arm64-cross all 14.2.0-6cross1 [10.3 kB] Get:87 http://localhost:3142/debian unstable/main amd64 libasan8-arm64-cross all 14.2.0-6cross1 [436 kB] Get:88 http://localhost:3142/debian unstable/main amd64 liblsan0-arm64-cross all 14.2.0-6cross1 [201 kB] Get:89 http://localhost:3142/debian unstable/main amd64 libtsan2-arm64-cross all 14.2.0-6cross1 [415 kB] Get:90 http://localhost:3142/debian unstable/main amd64 libstdc++6-arm64-cross all 14.2.0-6cross1 [546 kB] Get:91 http://localhost:3142/debian unstable/main amd64 libubsan1-arm64-cross all 14.2.0-6cross1 [186 kB] Get:92 http://localhost:3142/debian unstable/main amd64 libhwasan0-arm64-cross all 14.2.0-6cross1 [256 kB] Get:93 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev-arm64-cross all 14.2.0-6cross1 [2458 kB] Get:94 http://localhost:3142/debian unstable/main amd64 gcc-14-aarch64-linux-gnu amd64 14.2.0-6cross1 [21.6 MB] Get:95 http://localhost:3142/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:14.2.0-1 [1448 B] Get:96 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-arm64-cross all 6.11.2-1cross1 [2241 kB] Get:97 http://localhost:3142/debian unstable/main amd64 libc6-dev-arm64-cross all 2.40-3cross1 [1585 kB] Get:98 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev-arm64-cross all 14.2.0-6cross1 [2543 kB] Get:99 http://localhost:3142/debian unstable/main amd64 g++-14-aarch64-linux-gnu amd64 14.2.0-6cross1 [12.2 MB] Get:100 http://localhost:3142/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:14.2.0-1 [1200 B] Get:101 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-arm64 all 12.12 [3548 B] Get:102 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.22 [90.5 kB] Get:103 http://localhost:3142/debian unstable/main amd64 libtool all 2.4.7-8 [517 kB] Get:104 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:105 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:106 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:107 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:108 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:109 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:110 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.22.5-3 [1600 kB] Get:111 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:112 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:113 http://localhost:3142/debian unstable/main amd64 debhelper all 13.22 [919 kB] Get:114 http://localhost:3142/debian unstable/main amd64 xml-core all 0.19 [20.1 kB] Get:115 http://localhost:3142/debian unstable/main amd64 sgml-data all 2.0.11+nmu1 [179 kB] Get:116 http://localhost:3142/debian unstable/main amd64 docbook all 4.5-11 [126 kB] Get:117 http://localhost:3142/debian unstable/main amd64 libosp5 amd64 1.5.2-15.1 [973 kB] Get:118 http://localhost:3142/debian unstable/main amd64 opensp amd64 1.5.2-15.1 [448 kB] Get:119 http://localhost:3142/debian unstable/main amd64 docbook-to-man amd64 1:2.0.0-47 [73.6 kB] Get:120 http://localhost:3142/debian unstable/main amd64 docbook-xml all 4.5-13 [77.4 kB] Get:121 http://localhost:3142/debian unstable/main amd64 docbook-xsl all 1.79.2+dfsg-7 [1221 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libdw1t64 amd64 0.192-4 [255 kB] Get:123 http://localhost:3142/debian unstable/main amd64 libasm1t64 amd64 0.192-4 [28.4 kB] Get:124 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.6.0-2 [64.8 kB] Get:125 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.9.1-1 [119 kB] Get:126 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.9.1-1 [18.5 kB] Get:127 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.11.1-1 [360 kB] Get:128 http://localhost:3142/debian unstable/main amd64 libjson-c5 amd64 0.18+ds-1 [46.0 kB] Get:129 http://localhost:3142/debian unstable/main amd64 libdebuginfod1t64 amd64 0.192-4 [32.4 kB] Get:130 http://localhost:3142/debian unstable/main amd64 elfutils amd64 0.192-4 [505 kB] Get:131 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.36.1-1 [29.3 kB] Get:132 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.36.1-1 [75.3 kB] Get:133 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:134 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:135 http://localhost:3142/debian unstable/main amd64 fontconfig-config amd64 2.15.0-1.1+b1 [318 kB] Get:136 http://localhost:3142/debian unstable/main amd64 native-architecture all 0.2.3 [2108 B] Get:137 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.82.4-1 [1501 kB] Get:138 http://localhost:3142/debian unstable/main amd64 libgirepository-2.0-0 amd64 2.82.4-1 [139 kB] Get:139 http://localhost:3142/debian unstable/main amd64 girepository-tools amd64 2.82.4-1 [145 kB] Get:140 http://localhost:3142/debian unstable/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get:141 http://localhost:3142/debian unstable/main arm64 libatomic1 arm64 14.2.0-11 [10.1 kB] Get:142 http://localhost:3142/debian unstable/main arm64 libblkid1 arm64 2.40.2-12 [163 kB] Get:143 http://localhost:3142/debian unstable/main arm64 libpcre2-8-0 arm64 10.44-5 [242 kB] Get:144 http://localhost:3142/debian unstable/main arm64 libselinux1 arm64 3.7-3+b1 [72.1 kB] Get:145 http://localhost:3142/debian unstable/main arm64 libmount1 arm64 2.40.2-12 [191 kB] Get:146 http://localhost:3142/debian unstable/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-1+b1 [85.1 kB] Get:147 http://localhost:3142/debian unstable/main arm64 libglib2.0-0t64 arm64 2.82.4-1 [1411 kB] Get:148 http://localhost:3142/debian unstable/main arm64 libgirepository-2.0-0 arm64 2.82.4-1 [130 kB] Get:149 http://localhost:3142/debian unstable/main arm64 girepository-tools arm64 2.82.4-1 [135 kB] Get:150 http://localhost:3142/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:151 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:152 http://localhost:3142/debian unstable/main amd64 pkgconf amd64 1.8.1-4 [26.2 kB] Get:153 http://localhost:3142/debian unstable/main amd64 libxslt1.1 amd64 1.1.35-1.1+b1 [233 kB] Get:154 http://localhost:3142/debian unstable/main amd64 python3-lxml amd64 5.3.0-1+b1 [1676 kB] Get:155 http://localhost:3142/debian unstable/main amd64 python3-autocommand all 2.2.2-3 [13.6 kB] Get:156 http://localhost:3142/debian unstable/main amd64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get:157 http://localhost:3142/debian unstable/main amd64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get:158 http://localhost:3142/debian unstable/main amd64 python3-typeguard all 4.4.1-1 [37.0 kB] Get:159 http://localhost:3142/debian unstable/main amd64 python3-inflect all 7.3.1-2 [32.4 kB] Get:160 http://localhost:3142/debian unstable/main amd64 python3-jaraco.context all 6.0.0-1 [7984 B] Get:161 http://localhost:3142/debian unstable/main amd64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get:162 http://localhost:3142/debian unstable/main amd64 python3-pkg-resources all 75.6.0-1 [222 kB] Get:163 http://localhost:3142/debian unstable/main amd64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get:164 http://localhost:3142/debian unstable/main amd64 xsltproc amd64 1.1.35-1.1+b1 [115 kB] Get:165 http://localhost:3142/debian unstable/main amd64 gtk-doc-tools all 1.34.0-1 [328 kB] Get:166 http://localhost:3142/debian unstable/main amd64 help2man amd64 1.49.3 [198 kB] Get:167 http://localhost:3142/debian unstable/main amd64 icu-devtools amd64 72.1-5+b1 [210 kB] Get:168 http://localhost:3142/debian unstable/main amd64 libonig5 amd64 6.9.9-1+b1 [189 kB] Get:169 http://localhost:3142/debian unstable/main amd64 libjq1 amd64 1.7.1-3+b1 [164 kB] Get:170 http://localhost:3142/debian unstable/main amd64 jq amd64 1.7.1-3+b1 [77.8 kB] Get:171 http://localhost:3142/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get:172 http://localhost:3142/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get:173 http://localhost:3142/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get:174 http://localhost:3142/debian unstable/main arm64 libzstd1 arm64 1.5.6+dfsg-1+b1 [261 kB] Get:175 http://localhost:3142/debian unstable/main arm64 libssl3t64 arm64 3.3.2-2 [2600 kB] Get:176 http://localhost:3142/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get:177 http://localhost:3142/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get:178 http://localhost:3142/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-3 [56.7 kB] Get:179 http://localhost:3142/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-3 [40.3 kB] Get:180 http://localhost:3142/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-3 [40.8 kB] Get:181 http://localhost:3142/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-3 [52.2 kB] Get:182 http://localhost:3142/debian unstable/main arm64 krb5-multidev arm64 1.21.3-3 [126 kB] Get:183 http://localhost:3142/debian unstable/main arm64 libasan8 arm64 14.2.0-11 [2577 kB] Get:184 http://localhost:3142/debian unstable/main amd64 libbackward-cpp-dev all 1.6-1 [34.3 kB] Get:185 http://localhost:3142/debian unstable/main arm64 libuuid1 arm64 2.40.2-12 [35.9 kB] Get:186 http://localhost:3142/debian unstable/main arm64 uuid-dev arm64 2.40.2-12 [48.0 kB] Get:187 http://localhost:3142/debian unstable/main arm64 libblkid-dev arm64 2.40.2-12 [209 kB] Get:188 http://localhost:3142/debian unstable/main arm64 libgomp1 arm64 14.2.0-11 [124 kB] Get:189 http://localhost:3142/debian unstable/main arm64 libitm1 arm64 14.2.0-11 [24.1 kB] Get:190 http://localhost:3142/debian unstable/main arm64 liblsan0 arm64 14.2.0-11 [1162 kB] Get:191 http://localhost:3142/debian unstable/main arm64 libtsan2 arm64 14.2.0-11 [2385 kB] Get:192 http://localhost:3142/debian unstable/main arm64 libstdc++6 arm64 14.2.0-11 [638 kB] Get:193 http://localhost:3142/debian unstable/main arm64 libubsan1 arm64 14.2.0-11 [1040 kB] Get:194 http://localhost:3142/debian unstable/main arm64 libhwasan0 arm64 14.2.0-11 [1442 kB] Get:195 http://localhost:3142/debian unstable/main arm64 libgcc-14-dev arm64 14.2.0-11 [2371 kB] Get:196 http://localhost:3142/debian unstable/main arm64 libstdc++-14-dev arm64 14.2.0-11 [2310 kB] Get:197 http://localhost:3142/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-4 [10.6 MB] Get:198 http://localhost:3142/debian unstable/main arm64 libboost-program-options1.83.0 arm64 1.83.0-4 [331 kB] Get:199 http://localhost:3142/debian unstable/main arm64 libboost-program-options1.83-dev arm64 1.83.0-4 [371 kB] Get:200 http://localhost:3142/debian unstable/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B] Get:201 http://localhost:3142/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get:202 http://localhost:3142/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB] Get:203 http://localhost:3142/debian unstable/main arm64 libbz2-1.0 arm64 1.0.8-6 [37.8 kB] Get:204 http://localhost:3142/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get:205 http://localhost:3142/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get:206 http://localhost:3142/debian unstable/main arm64 libpng16-16t64 arm64 1.6.44-3 [273 kB] Get:207 http://localhost:3142/debian unstable/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get:208 http://localhost:3142/debian unstable/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get:209 http://localhost:3142/debian unstable/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get:210 http://localhost:3142/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get:211 http://localhost:3142/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get:212 http://localhost:3142/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get:213 http://localhost:3142/debian unstable/main amd64 libx11-data all 2:1.8.10-2 [337 kB] Get:214 http://localhost:3142/debian unstable/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get:215 http://localhost:3142/debian unstable/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get:216 http://localhost:3142/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get:217 http://localhost:3142/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get:218 http://localhost:3142/debian unstable/main arm64 libxrender1 arm64 1:0.9.10-1.1+b3 [27.2 kB] Get:219 http://localhost:3142/debian unstable/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get:220 http://localhost:3142/debian unstable/main arm64 libcairo-gobject2 arm64 1.18.2-2 [130 kB] Get:221 http://localhost:3142/debian unstable/main arm64 liblzo2-2 arm64 2.10-3+b1 [49.6 kB] Get:222 http://localhost:3142/debian unstable/main arm64 libcairo-script-interpreter2 arm64 1.18.2-2 [57.4 kB] Get:223 http://localhost:3142/debian unstable/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get:224 http://localhost:3142/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get:225 http://localhost:3142/debian unstable/main arm64 libpng-dev arm64 1.6.44-3 [360 kB] Get:226 http://localhost:3142/debian unstable/main arm64 libfreetype-dev arm64 2.13.3+dfsg-1 [600 kB] Get:227 http://localhost:3142/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get:228 http://localhost:3142/debian unstable/main arm64 libfontconfig-dev arm64 2.15.0-1.1+b1 [411 kB] Get:229 http://localhost:3142/debian unstable/main arm64 libffi-dev arm64 3.4.6-1 [57.0 kB] Get:230 http://localhost:3142/debian unstable/main arm64 libsepol2 arm64 3.7-1 [264 kB] Get:231 http://localhost:3142/debian unstable/main arm64 libsepol-dev arm64 3.7-1 [354 kB] Get:232 http://localhost:3142/debian unstable/main arm64 libpcre2-16-0 arm64 10.44-5 [230 kB] Get:233 http://localhost:3142/debian unstable/main arm64 libpcre2-32-0 arm64 10.44-5 [220 kB] Get:234 http://localhost:3142/debian unstable/main arm64 libpcre2-posix3 arm64 10.44-5 [60.5 kB] Get:235 http://localhost:3142/debian unstable/main arm64 libpcre2-dev arm64 10.44-5 [704 kB] Get:236 http://localhost:3142/debian unstable/main arm64 libselinux1-dev arm64 3.7-3+b1 [164 kB] Get:237 http://localhost:3142/debian unstable/main arm64 libmount-dev arm64 2.40.2-12 [29.1 kB] Get:238 http://localhost:3142/debian unstable/main arm64 libsysprof-capture-4-dev arm64 47.2-1 [49.1 kB] Get:239 http://localhost:3142/debian unstable/main arm64 libgio-2.0-dev arm64 2.82.4-1 [1698 kB] Get:240 http://localhost:3142/debian unstable/main amd64 libglib2.0-data all 2.82.4-1 [1276 kB] Get:241 http://localhost:3142/debian unstable/main amd64 libglib2.0-bin amd64 2.82.4-1 [127 kB] Get:242 http://localhost:3142/debian unstable/main amd64 python3-packaging all 24.2-1 [55.3 kB] Get:243 http://localhost:3142/debian unstable/main amd64 libgio-2.0-dev-bin amd64 2.82.4-1 [163 kB] Get:244 http://localhost:3142/debian unstable/main amd64 libglib2.0-dev-bin amd64 2.82.4-1 [52.0 kB] Get:245 http://localhost:3142/debian unstable/main arm64 libglib2.0-dev arm64 2.82.4-1 [52.7 kB] Get:246 http://localhost:3142/debian unstable/main arm64 libpixman-1-dev arm64 0.44.0-3 [11.4 kB] Get:247 http://localhost:3142/debian unstable/main amd64 x11-common all 1:7.7+23.1 [216 kB] Get:248 http://localhost:3142/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get:249 http://localhost:3142/debian unstable/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get:250 http://localhost:3142/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:251 http://localhost:3142/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB] Get:252 http://localhost:3142/debian unstable/main amd64 x11proto-core-dev all 2024.1-1 [3312 B] Get:253 http://localhost:3142/debian unstable/main arm64 libice-dev arm64 2:1.1.1-1 [73.0 kB] Get:254 http://localhost:3142/debian unstable/main arm64 libsm-dev arm64 2:1.2.4-1 [38.0 kB] Get:255 http://localhost:3142/debian unstable/main arm64 libxau-dev arm64 1:1.0.11-1 [23.9 kB] Get:256 http://localhost:3142/debian unstable/main arm64 libxdmcp-dev arm64 1:1.1.5-1 [44.2 kB] Get:257 http://localhost:3142/debian unstable/main amd64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:258 http://localhost:3142/debian unstable/main arm64 libxcb1-dev arm64 1.17.0-2+b1 [182 kB] Get:259 http://localhost:3142/debian unstable/main arm64 libx11-dev arm64 2:1.8.10-2 [877 kB] Get:260 http://localhost:3142/debian unstable/main arm64 libxcb-render0-dev arm64 1.17.0-2+b1 [119 kB] Get:261 http://localhost:3142/debian unstable/main arm64 libxcb-shm0-dev arm64 1.17.0-2+b1 [108 kB] Get:262 http://localhost:3142/debian unstable/main arm64 libxext-dev arm64 2:1.3.4-1+b2 [105 kB] Get:263 http://localhost:3142/debian unstable/main arm64 libxrender-dev arm64 1:0.9.10-1.1+b3 [35.7 kB] Get:264 http://localhost:3142/debian unstable/main arm64 libcairo2-dev arm64 1.18.2-2 [43.0 kB] Get:265 http://localhost:3142/debian unstable/main arm64 libgmp10 arm64 2:6.3.0+dfsg-3 [535 kB] Get:266 http://localhost:3142/debian unstable/main arm64 libnettle8t64 arm64 3.10-1+b1 [309 kB] Get:267 http://localhost:3142/debian unstable/main arm64 libhogweed6t64 arm64 3.10-1+b1 [331 kB] Get:268 http://localhost:3142/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get:269 http://localhost:3142/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get:270 http://localhost:3142/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-2+b1 [411 kB] Get:271 http://localhost:3142/debian unstable/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB] Get:272 http://localhost:3142/debian unstable/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB] Get:273 http://localhost:3142/debian unstable/main arm64 libdb5.3t64 arm64 5.3.28+dfsg2-9 [629 kB] Get:274 http://localhost:3142/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get:275 http://localhost:3142/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get:276 http://localhost:3142/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get:277 http://localhost:3142/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get:278 http://localhost:3142/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get:279 http://localhost:3142/debian unstable/main arm64 libngtcp2-16 arm64 1.9.1-1 [109 kB] Get:280 http://localhost:3142/debian unstable/main arm64 libngtcp2-crypto-gnutls8 arm64 1.9.1-1 [17.3 kB] Get:281 http://localhost:3142/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get:282 http://localhost:3142/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get:283 http://localhost:3142/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get:284 http://localhost:3142/debian unstable/main arm64 libcurl3t64-gnutls arm64 8.11.1-1 [332 kB] Get:285 http://localhost:3142/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get:286 http://localhost:3142/debian unstable/main arm64 libunbound8 arm64 1.22.0-1 [553 kB] Get:287 http://localhost:3142/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB] Get:288 http://localhost:3142/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB] Get:289 http://localhost:3142/debian unstable/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get:290 http://localhost:3142/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-2+b1 [208 kB] Get:291 http://localhost:3142/debian unstable/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get:292 http://localhost:3142/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB] Get:293 http://localhost:3142/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB] Get:294 http://localhost:3142/debian unstable/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get:295 http://localhost:3142/debian unstable/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB] Get:296 http://localhost:3142/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-3 [15.8 kB] Get:297 http://localhost:3142/debian unstable/main arm64 libldap-dev arm64 2.5.18+dfsg-3+b1 [300 kB] Get:298 http://localhost:3142/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get:299 http://localhost:3142/debian unstable/main arm64 libnghttp3-dev arm64 1.6.0-2 [86.5 kB] Get:300 http://localhost:3142/debian unstable/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.9.1-1 [23.0 kB] Get:301 http://localhost:3142/debian unstable/main arm64 libngtcp2-dev arm64 1.9.1-1 [162 kB] Get:302 http://localhost:3142/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get:303 http://localhost:3142/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get:304 http://localhost:3142/debian unstable/main arm64 libssl-dev arm64 3.3.2-2 [3185 kB] Get:305 http://localhost:3142/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get:306 http://localhost:3142/debian unstable/main arm64 libzstd-dev arm64 1.5.6+dfsg-1+b1 [329 kB] Get:307 http://localhost:3142/debian unstable/main arm64 libcurl4-gnutls-dev arm64 8.11.1-1 [461 kB] Get:308 http://localhost:3142/debian unstable/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get:309 http://localhost:3142/debian unstable/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get:310 http://localhost:3142/debian unstable/main arm64 libdisorder0 arm64 0.0.2+git20130809.8062ee1-4+b2 [4920 B] Get:311 http://localhost:3142/debian unstable/main arm64 libdisorder-dev arm64 0.0.2+git20130809.8062ee1-4+b2 [4888 B] Get:312 http://localhost:3142/debian unstable/main arm64 libdivsufsort3 arm64 2.0.1-6+b1 [39.9 kB] Get:313 http://localhost:3142/debian unstable/main arm64 libdivsufsort-dev arm64 2.0.1-6+b1 [19.1 kB] Get:314 http://localhost:3142/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get:315 http://localhost:3142/debian unstable/main arm64 libelf-dev arm64 0.192-4 [94.9 kB] Get:316 http://localhost:3142/debian unstable/main arm64 liblzma5 arm64 5.6.3-1+b1 [266 kB] Get:317 http://localhost:3142/debian unstable/main arm64 libdw1t64 arm64 0.192-4 [237 kB] Get:318 http://localhost:3142/debian unstable/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get:319 http://localhost:3142/debian unstable/main arm64 libdw-dev arm64 0.192-4 [320 kB] Get:320 http://localhost:3142/debian unstable/main arm64 libfastahack0 arm64 1.0.0+dfsg-11+b2 [23.6 kB] Get:321 http://localhost:3142/debian unstable/main arm64 libfastahack-dev arm64 1.0.0+dfsg-11+b2 [26.1 kB] Get:322 http://localhost:3142/debian unstable/main arm64 libfml0 arm64 0.1+git20221215.85f159e-1 [65.6 kB] Get:323 http://localhost:3142/debian unstable/main arm64 libfml-dev arm64 0.1+git20221215.85f159e-1 [79.9 kB] Get:324 http://localhost:3142/debian unstable/main arm64 libgpg-error0 arm64 1.51-2 [78.5 kB] Get:325 http://localhost:3142/debian unstable/main arm64 libgcrypt20 arm64 1.11.0-6 [741 kB] Get:326 http://localhost:3142/debian unstable/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get:327 http://localhost:3142/debian unstable/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB] Get:328 http://localhost:3142/debian unstable/main arm64 libhts-dev arm64 1.20+ds-2 [1626 kB] Get:329 http://localhost:3142/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get:330 http://localhost:3142/debian unstable/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB] Get:331 http://localhost:3142/debian unstable/main arm64 libjansson4 arm64 2.14-2+b3 [39.2 kB] Get:332 http://localhost:3142/debian unstable/main arm64 libjansson-dev arm64 2.14-2+b3 [43.6 kB] Get:333 http://localhost:3142/debian unstable/main arm64 libjemalloc2 arm64 5.3.0-2+b2 [217 kB] Get:334 http://localhost:3142/debian unstable/main arm64 libjemalloc-dev arm64 5.3.0-2+b2 [357 kB] Get:335 http://localhost:3142/debian unstable/main arm64 libltdl7 arm64 2.4.7-8 [392 kB] Get:336 http://localhost:3142/debian unstable/main arm64 libxxhash0 arm64 0.8.2-2+b2 [22.1 kB] Get:337 http://localhost:3142/debian unstable/main arm64 liblz4-1 arm64 1.9.4-3+b1 [55.8 kB] Get:338 http://localhost:3142/debian unstable/main arm64 liblz4-dev arm64 1.9.4-3+b1 [79.1 kB] Get:339 http://localhost:3142/debian unstable/main arm64 libmhash2 arm64 0.9.9.9-10 [94.5 kB] Get:340 http://localhost:3142/debian unstable/main arm64 libtinfo6 arm64 6.5-2+b1 [337 kB] Get:341 http://localhost:3142/debian unstable/main arm64 libncurses6 arm64 6.5-2+b1 [96.1 kB] Get:342 http://localhost:3142/debian unstable/main arm64 libncursesw6 arm64 6.5-2+b1 [125 kB] Get:343 http://localhost:3142/debian unstable/main arm64 libncurses-dev arm64 6.5-2+b1 [338 kB] Get:344 http://localhost:3142/debian unstable/main arm64 libprotobuf32t64 arm64 3.21.12-10+b1 [859 kB] Get:345 http://localhost:3142/debian unstable/main arm64 libprotobuf-lite32t64 arm64 3.21.12-10+b1 [250 kB] Get:346 http://localhost:3142/debian unstable/main arm64 libprotobuf-dev arm64 3.21.12-10+b1 [1261 kB] Get:347 http://localhost:3142/debian unstable/main amd64 libprotobuf32t64 amd64 3.21.12-10+b1 [982 kB] Get:348 http://localhost:3142/debian unstable/main arm64 libprotoc32t64 arm64 3.21.12-10+b1 [789 kB] Get:349 http://localhost:3142/debian unstable/main arm64 libprotoc-dev arm64 3.21.12-10+b1 [937 kB] Get:350 http://localhost:3142/debian unstable/main amd64 libprotoc32t64 amd64 3.21.12-10+b1 [920 kB] Get:351 http://localhost:3142/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get:352 http://localhost:3142/debian unstable/main arm64 libxslt1.1 arm64 1.1.35-1.1+b1 [222 kB] Get:353 http://localhost:3142/debian unstable/main arm64 libyajl2 arm64 2.1.0-5+b2 [22.5 kB] Get:354 http://localhost:3142/debian unstable/main arm64 libraptor2-0 arm64 2.0.16-4+b1 [164 kB] Get:355 http://localhost:3142/debian unstable/main arm64 libxml2-dev arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [751 kB] Get:356 http://localhost:3142/debian unstable/main arm64 libxslt1-dev arm64 1.1.35-1.1+b1 [345 kB] Get:357 http://localhost:3142/debian unstable/main arm64 libyajl-dev arm64 2.1.0-5+b2 [31.0 kB] Get:358 http://localhost:3142/debian unstable/main arm64 libraptor2-dev arm64 2.0.16-4+b1 [205 kB] Get:359 http://localhost:3142/debian unstable/main arm64 librasqal3t64 arm64 0.9.33-2.1+b2 [178 kB] Get:360 http://localhost:3142/debian unstable/main arm64 librasqal3-dev arm64 0.9.33-2.1+b2 [224 kB] Get:361 http://localhost:3142/debian unstable/main arm64 librdf0t64 arm64 1.0.17-4+b1 [100 kB] Get:362 http://localhost:3142/debian unstable/main arm64 librdf0-dev arm64 1.0.17-4+b1 [239 kB] Get:363 http://localhost:3142/debian unstable/main amd64 libsimde-dev all 0.8.2-2 [467 kB] Get:364 http://localhost:3142/debian unstable/main arm64 libsmithwaterman0 arm64 0.0+git20160702.2610e25-12+b2 [32.4 kB] Get:365 http://localhost:3142/debian unstable/main arm64 libsmithwaterman-dev arm64 0.0+git20160702.2610e25-12+b2 [37.9 kB] Get:366 http://localhost:3142/debian unstable/main amd64 libsparsehash-dev all 2.0.3-2 [76.8 kB] Get:367 http://localhost:3142/debian unstable/main arm64 libssw0 arm64 1.1-15+b1 [20.0 kB] Get:368 http://localhost:3142/debian unstable/main arm64 libssw-dev arm64 1.1-15+b1 [23.4 kB] Get:369 http://localhost:3142/debian unstable/main arm64 libtabixpp0t64 arm64 1.1.2-2.1+b1 [9504 B] Get:370 http://localhost:3142/debian unstable/main arm64 libtabixpp-dev arm64 1.1.2-2.1+b1 [9052 B] Get:371 http://localhost:3142/debian unstable/main amd64 libtsl-hopscotch-map-dev all 2.3.1-1 [36.6 kB] Get:372 http://localhost:3142/debian unstable/main arm64 libwfa2-0 arm64 2.3.3-4+b1 [55.2 kB] Get:373 http://localhost:3142/debian unstable/main arm64 libvcflib2 arm64 1.0.9+dfsg1-3+b2 [165 kB] Get:374 http://localhost:3142/debian unstable/main arm64 libwfa2-dev arm64 2.3.3-4+b1 [74.9 kB] Get:375 http://localhost:3142/debian unstable/main arm64 libvcflib-dev arm64 1.0.9+dfsg1-3+b2 [77.8 kB] Get:376 http://localhost:3142/debian unstable/main amd64 protobuf-compiler amd64 3.21.12-10+b1 [84.8 kB] Get:377 http://localhost:3142/debian unstable/main amd64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get:378 http://localhost:3142/debian unstable/main amd64 rs amd64 20200313-1 [15.5 kB] Get:379 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-28 [166 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 287 MB in 7s (38.3 MB/s) Selecting previously unselected package m4. (Reading database ... 13026 files and directories currently installed.) Preparing to unpack .../archives/m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package flex. Preparing to unpack .../flex_2.6.4-8.2+b3_amd64.deb ... Unpacking flex (2.6.4-8.2+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../libreadline8t64_8.2-6_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-6) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../libsigsegv2_2.14-1+b2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.14-1+b2) ... Setting up readline-common (8.2-6) ... Setting up libreadline8t64:amd64 (8.2-6) ... Setting up libsigsegv2:amd64 (2.14-1+b2) ... Selecting previously unselected package gawk. 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Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3 to /lib/x86_64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/x86_64-linux-gnu/libtirpc.so.3.0.0 to /lib/x86_64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:amd64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../10-libnsl2_1.3.0-3+b3_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-3+b3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../11-libsqlite3-0_3.46.1-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.46.1-1) ... Selecting previously unselected package libpython3.12-stdlib:amd64. Preparing to unpack .../12-libpython3.12-stdlib_3.12.8-3_amd64.deb ... Unpacking libpython3.12-stdlib:amd64 (3.12.8-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../13-python3.12_3.12.8-3_amd64.deb ... Unpacking python3.12 (3.12.8-3) ... 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Setting up python3 (3.12.7-1) ... /usr/share/gtk-doc/python/gtkdoc/scan.py:44: SyntaxWarning: invalid escape sequence '\s' VAR_TYPE_MODIFIER = '(?:' + '|'.join([t + '\s+' for t in TYPE_MODIFIERS]) + ')*' /usr/share/gtk-doc/python/gtkdoc/scan.py:45: SyntaxWarning: invalid escape sequence '\s' RET_TYPE_MODIFIER = '(?:' + '|'.join([t + '\s+' for t in TYPE_MODIFIERS + ['G_CONST_RETURN']]) + ')*' /usr/share/gtk-doc/python/gtkdoc/scan.py:238: SyntaxWarning: invalid escape sequence '\(' ignore_decorators = '|' + options.ignore_decorators.replace('()', '\(\w*\)') /usr/share/gtk-doc/python/gtkdoc/scan.py:239: SyntaxWarning: invalid escape sequence '\s' optional_decorators_regex = '(?:\s+(?:%s))?' % ignore_decorators[1:] /usr/share/gtk-doc/python/gtkdoc/scan.py:487: SyntaxWarning: invalid escape sequence '\(' ignore_decorators = '|' + options.ignore_decorators.replace('()', '\(\w*\)') /usr/share/gtk-doc/python/gtkdoc/scan.py:488: SyntaxWarning: invalid escape sequence '\s' optional_decorators_regex = '(?:\s+(?:%s))?' % ignore_decorators[1:] Setting up python3-autocommand (2.2.2-3) ... Setting up python3-packaging (24.2-1) ... Setting up crossbuild-essential-arm64 (12.12) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-lxml:amd64 (5.3.0-1+b1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up libgio-2.0-dev-bin (2.82.4-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up libglib2.0-dev-bin (2.82.4-1) ... Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up libgcc-s1:arm64 (14.2.0-11) ... Setting up libc6:arm64 (2.40-4) ... Setting up libnghttp3-9:arm64 (1.6.0-2) ... Setting up libmhash2:arm64 (0.9.9.9-10) ... Setting up libnghttp3-dev:arm64 (1.6.0-2) ... Setting up libdb5.3t64:arm64 (5.3.28+dfsg2-9) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up libhwasan0:arm64 (14.2.0-11) ... Setting up libasan8:arm64 (14.2.0-11) ... 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Setting up docbook-xsl (1.79.2+dfsg-7) ... Setting up sgml-data (2.0.11+nmu1) ... Processing triggers for sgml-base (1.31) ... Setting up docbook-xml (4.5-13) ... Setting up docbook (4.5-11) ... Processing triggers for sgml-base (1.31) ... Setting up docbook-to-man (1:2.0.0-47) ... Setting up gtk-doc-tools (1.34.0-1) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in amd64 arm64 ppc64el mips64el s390x riscv64 x32 all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-26-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.112-1 (2024-09-30) amd64 (x86_64) Toolchain package versions: binutils_2.43.50.20241221-1 dpkg-dev_1.22.11 g++-14_14.2.0-11 gcc-14_14.2.0-11 libc6-dev_2.40-4 libstdc++-14-dev_14.2.0-11 libstdc++-14-dev-arm64-cross_14.2.0-6cross1 libstdc++6_14.2.0-11 libstdc++6-arm64-cross_14.2.0-6cross1 linux-libc-dev_6.12.6-1 Package versions: apt_2.9.18 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-3 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.5 bash_5.2.37-1 bc_1.07.1-4 binutils_2.43.50.20241221-1 binutils-aarch64-linux-gnu_2.43.50.20241221-1 binutils-common_2.43.50.20241221-1 binutils-x86-64-linux-gnu_2.43.50.20241221-1 bison_2:3.8.2+dfsg-1+b2 bsdextrautils_2.40.2-12 bsdutils_1:2.40.2-12 build-essential_12.12 bzip2_1.0.8-6 cmake_3.31.2-1 cmake-data_3.31.2-1 comerr-dev_2.1-1.47.2~rc1-2 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-11 cpp-14-aarch64-linux-gnu_14.2.0-6cross1 cpp-14-x86-64-linux-gnu_14.2.0-11 cpp-aarch64-linux-gnu_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 cross-exe-wrapper_0.2.3 crossbuild-essential-arm64_12.12 dash_0.5.12-9 debconf_1.5.87 debhelper_13.22 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 docbook_4.5-11 docbook-to-man_1:2.0.0-47 docbook-xml_4.5-13 docbook-xsl_1.79.2+dfsg-7 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 e2fsprogs_1.47.2~rc1-2 elfutils_0.192-4 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: vg Binary: vg, vg-docs Architecture: amd64 arm64 ppc64el mips64el s390x riscv64 x32 all Version: 1.59.0+ds-0.1 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://github.com/vgteam/vg#vg Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/vg Vcs-Git: https://salsa.debian.org/med-team/vg.git Testsuite: autopkgtest Testsuite-Triggers: libvcflib-tools Build-Depends: debhelper-compat (= 13), pv , bsdextrautils | bsdmainutils, zlib1g-dev, rs, libffi-dev, bwa , protobuf-compiler, libprotoc-dev, libprotobuf-dev, libjansson-dev, libbz2-dev, libtinfo6, libncurses-dev, automake, libtool, jq, samtools , unzip, librdf0-dev, cmake, pkgconf, bc, gtk-doc-tools, raptor2-utils , rasqal-utils , bison, flex, gawk, liblz4-dev, liblzma-dev, libcairo2-dev, libpixman-1-dev, libdeflate-dev, libboost-program-options-dev, libjemalloc-dev, libbackward-cpp-dev, elfutils, libdw-dev, libelf-dev, libraptor2-dev, libsparsehash-dev, rapidjson-dev, libfml-dev, libfastahack-dev, fastahack , tabix , xxd , libdivsufsort-dev, libtsl-hopscotch-map-dev, libvcflib-dev (>= 1.0.1), libvcflib-tools , libhts-dev, help2man , python3:any, libsimde-dev, libzstd-dev Build-Depends-Indep: doxygen , graphviz Package-List: vg deb science optional arch=amd64,arm64,ppc64el,mips64el,s390x,riscv64,x32 vg-docs deb doc optional arch=all Checksums-Sha1: 9cceebb48fb18c8618654723085c6aaa4321f386 69705744 vg_1.59.0+ds.orig.tar.xz ddd7d9f6b17fee1f35ac6d3a00de3d7b2e6e491c 117112 vg_1.59.0+ds-0.1.debian.tar.xz Checksums-Sha256: 17e43b91bce35905caf9af98e3b839eeff296af7105c1df818eb81004e6ab144 69705744 vg_1.59.0+ds.orig.tar.xz dfd2b9a5f833d45b9b5632b651de59668380352bc87fa2654b2c2c7acf6c423b 117112 vg_1.59.0+ds-0.1.debian.tar.xz Files: e8aff1b3feff38a4085bf4fbee107ac9 69705744 vg_1.59.0+ds.orig.tar.xz 66279467d1d25d09cdba16f34999a366 117112 vg_1.59.0+ds-0.1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQHEBAEBCgAuFiEEQGIgyLhVKAI3jM5BH1x6i0VWQxQFAmc/WKIQHGJhZ2VAZGVi aWFuLm9yZwAKCRAfXHqLRVZDFHNzDAChrlW8GHppGU1D++m3+LBMHm1tEC4x4pa4 85La0aNeKtBpMqH6R7GpLZJ2HkdjXCqWdKXv60UYX7ughXFl30EQoAT8OM6+gN1w 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avoid_abs_confusion dpkg-source: info: applying gcc-12 dpkg-source: info: applying use_packaged_libdeflate dpkg-source: info: applying use_packaged_jemalloc dpkg-source: info: applying use_packaged_libbackward-cpp dpkg-source: info: applying use_packaged_elfutils dpkg-source: info: applying use_packaged_raptor2 dpkg-source: info: applying no_need_for_snappy dpkg-source: info: applying use_packaged_sparsehash dpkg-source: info: applying use_packaged_fermi-lite dpkg-source: info: applying no_rpath dpkg-source: info: applying no_pg dpkg-source: info: applying use_packaged_fastahack dpkg-source: info: applying hardening_flags dpkg-source: info: applying static dpkg-source: info: applying use_packaged_lz4 dpkg-source: info: applying parallize_better dpkg-source: info: applying use_packaged_libtsl-hopscotch-map-dev dpkg-source: info: applying libVCFH_unneeded dpkg-source: info: applying better_clean dpkg-source: info: applying use_packaged_vcflib dpkg-source: info: applying use_packaged_htslib dpkg-source: info: applying simde dpkg-source: info: applying crossbuild dpkg-source: info: applying python3 Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.eh2hrOwIzR/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-5d36a604-2436-48ed-a1ed-edfe2b81a5ed SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package vg dpkg-buildpackage: info: source version 1.59.0+ds-0.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Bastian Germann dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' find /<>/include/ -type f -a '!' -name vg_git_version.hpp -delete dh_auto_clean || true make -j1 clean make[2]: Entering directory '/<>' Package libfastahack was not found in the pkg-config search path. Perhaps you should add the directory containing `libfastahack.pc' to the PKG_CONFIG_PATH environment variable Package 'libfastahack', required by 'virtual:world', not found Package cairo was not found in the pkg-config search path. Perhaps you should add the directory containing `cairo.pc' to the PKG_CONFIG_PATH environment variable Package 'cairo', required by 'virtual:world', not found Package 'libzstd', required by 'virtual:world', not found Package 'protobuf', required by 'virtual:world', not found Package 'jansson', required by 'virtual:world', not found Package libfastahack was not found in the pkg-config search path. Perhaps you should add the directory containing `libfastahack.pc' to the PKG_CONFIG_PATH environment variable Package 'libfastahack', required by 'virtual:world', not found Package htslib was not found in the pkg-config search path. Perhaps you should add the directory containing `htslib.pc' to the PKG_CONFIG_PATH environment variable Package 'htslib', required by 'virtual:world', not found Package cairo was not found in the pkg-config search path. Perhaps you should add the directory containing `cairo.pc' to the PKG_CONFIG_PATH environment variable Package 'cairo', required by 'virtual:world', not found Package 'libzstd', required by 'virtual:world', not found Package protobuf was not found in the pkg-config search path. Perhaps you should add the directory containing `protobuf.pc' to the PKG_CONFIG_PATH environment variable Package 'protobuf', required by 'virtual:world', not found Package 'jansson', required by 'virtual:world', not found OS is Linux Compiler g++ is assumed to be GCC CXXFLAGS are -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp LDFLAGS are -Wl,-z,relro -Wl,-z,now Makefile:266: OpenMP header omp.h is not available! vg will not be able to build! rm -f -r bin/unittest rm -f -r lib rm -f -r obj/unittest/support rm -f -r obj/unittest rm -f -r obj/subcommand rm -f -r obj/pic/io rm -f -r obj/io rm -f -r obj/pic/algorithms rm -f -r obj/algorithms rm -f -r obj/config rm -f -r obj/pic rm -f -r obj rm -f -r share/ cd ./deps && cd sonLib && make clean make[3]: Entering directory '/<>/deps/sonLib' cd C && make clean make[4]: Entering directory '/<>/deps/sonLib/C' rm -rf ../bin ../lib make[4]: Leaving directory '/<>/deps/sonLib/C' cd externalTools && make clean make[4]: Entering directory '/<>/deps/sonLib/externalTools' cd cutest && make clean make[5]: Entering directory '/<>/deps/sonLib/externalTools/cutest' rm -f ../../lib/cuTest.a ../../lib/CuTest.h make[5]: Leaving directory '/<>/deps/sonLib/externalTools/cutest' cd quicktree_1.1 && make clean make[5]: Entering directory '/<>/deps/sonLib/externalTools/quicktree_1.1' rm -rf ./obj/*.o make[5]: Leaving directory '/<>/deps/sonLib/externalTools/quicktree_1.1' make[4]: Leaving directory '/<>/deps/sonLib/externalTools' rm -f ./bin/sonLib_daemonize.py make[3]: Leaving directory '/<>/deps/sonLib' cd ./deps && cd gcsa2 && make clean make[3]: Entering directory '/<>/deps/gcsa2' Makefile:2: ../sdsl-lite/Make.helper: No such file or directory make[3]: *** No rule to make target '../sdsl-lite/Make.helper'. Stop. make[3]: Leaving directory '/<>/deps/gcsa2' make[2]: *** [Makefile:854: clean] Error 2 make[2]: Leaving directory '/<>' dh_auto_clean: error: make -j1 clean returned exit code 2 make[1]: Leaving directory '/<>' debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -Rf ./deps/DYNAMIC/build/CMakeFiles dh_clean make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch dh_update_autotools_config -a debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' dh_autoreconf --sourcedirectory=/<>/deps/vowpal_wabbit make[1]: Leaving directory '/<>' dh_auto_configure -a debian/rules override_dh_auto_build-arch make[1]: Entering directory '/<>' mkdir -p /<>/debian/help find . -type d -name simde | xargs rm -Rf dh_auto_build -- all test/build_graph bin/shuf make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc all test/build_graph bin/shuf make[2]: Entering directory '/<>' OS is Linux Compiler aarch64-linux-gnu-g++ is assumed to be GCC CXXFLAGS are -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp LDFLAGS are -Wl,-z,relro -Wl,-z,now . ./source_me.sh && cd deps/sdsl-lite && BUILD_PORTABLE=1 CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp" ./install.sh /<> Library will be installed in '/<>' WARNING: .git/hooks directory does not exists. The pre-commit hook is not installed. CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- The C compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/aarch64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/aarch64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Compiler is recent enough to support C++14. -- Performing Test HAVE_GCC_STD=C__14__WALL__WEXTRA__DNDEBUG -- Performing Test HAVE_GCC_STD=C__14__WALL__WEXTRA__DNDEBUG - Success -- Performing Test HAVE_GCC_O3__FFAST_MATH__FUNROLL_LOOPS -- Performing Test HAVE_GCC_O3__FFAST_MATH__FUNROLL_LOOPS - Success -- Performing Test HAVE_CXA_DEMANGLE -- Performing Test HAVE_CXA_DEMANGLE - Success -- Compiler supports DEMANGLE. -- Performing Test HAVE_GCC_DHAVE_CXA_DEMANGLE -- Performing Test HAVE_GCC_DHAVE_CXA_DEMANGLE - Success -- Could NOT find Git (missing: GIT_EXECUTABLE) CMake Warning at CMakeLists.txt:102 (message): git not found. Cloning of submodules will not work. -- Looking for C++ include cstdio -- Looking for C++ include cstdio - found -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (1.2s) -- Generating done (0.1s) -- Build files have been written to: /<>/deps/sdsl-lite/build make[3]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 sdsl make[4]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 8 make -f CMakeFiles/Makefile2 lib/CMakeFiles/sdsl.dir/all make[5]: Entering directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/depend make[6]: Entering directory '/<>/deps/sdsl-lite/build' cd /<>/deps/sdsl-lite/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/sdsl-lite /<>/deps/sdsl-lite/lib /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build/lib /<>/deps/sdsl-lite/build/lib/CMakeFiles/sdsl.dir/DependInfo.cmake "--color=" make[6]: Leaving directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/build make[6]: Entering directory '/<>/deps/sdsl-lite/build' [ 0%] Building CXX object lib/CMakeFiles/sdsl.dir/bits.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/bits.cpp.o -MF CMakeFiles/sdsl.dir/bits.cpp.o.d -o CMakeFiles/sdsl.dir/bits.cpp.o -c /<>/deps/sdsl-lite/lib/bits.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o -MF CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o.d -o CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o -c /<>/deps/sdsl-lite/lib/bp_support_algorithm.cpp In file included from /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:24, from /<>/deps/sdsl-lite/build/lib/../include/sdsl/bp_support_algorithm.hpp:24, from /<>/deps/sdsl-lite/lib/bp_support_algorithm.cpp:1: In static member function ‘static void sdsl::bits::write_int(uint64_t*, uint64_t, uint8_t, uint8_t)’, inlined from ‘static void sdsl::memory_manager::resize(t_vec&, typename t_vec::size_type) [with t_vec = sdsl::int_vector<0>]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/memory_management.hpp:364:36, inlined from ‘void sdsl::int_vector< >::bit_resize(size_type) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:1358:27, inlined from ‘void sdsl::int_vector< >::resize(size_type) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:380:23, inlined from ‘sdsl::int_vector< >::int_vector(size_type, value_type, uint8_t) [with unsigned char t_width = 0]’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/int_vector.hpp:1285:11, inlined from ‘sdsl::excess::impl::impl()’ at /<>/deps/sdsl-lite/build/lib/../include/sdsl/bp_support_algorithm.hpp:114:46: /<>/deps/sdsl-lite/build/lib/../include/sdsl/bits.hpp:448:9: warning: ‘*temp’ may be used uninitialized [-Wmaybe-uninitialized] 448 | *word &= | ^~~~~ [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o -MF CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o.d -o CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o -c /<>/deps/sdsl-lite/lib/coder_elias_delta.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o -MF CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o.d -o CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o -c /<>/deps/sdsl-lite/lib/coder_elias_gamma.cpp [ 12%] Building CXX object lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o -MF CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o.d -o CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o -c /<>/deps/sdsl-lite/lib/coder_fibonacci.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/config.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/config.cpp.o -MF CMakeFiles/sdsl.dir/config.cpp.o.d -o CMakeFiles/sdsl.dir/config.cpp.o -c /<>/deps/sdsl-lite/lib/config.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_config.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_config.cpp.o -MF CMakeFiles/sdsl.dir/construct_config.cpp.o.d -o CMakeFiles/sdsl.dir/construct_config.cpp.o -c /<>/deps/sdsl-lite/lib/construct_config.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_isa.cpp.o -MF CMakeFiles/sdsl.dir/construct_isa.cpp.o.d -o CMakeFiles/sdsl.dir/construct_isa.cpp.o -c /<>/deps/sdsl-lite/lib/construct_isa.cpp [ 25%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_lcp.cpp.o -MF CMakeFiles/sdsl.dir/construct_lcp.cpp.o.d -o CMakeFiles/sdsl.dir/construct_lcp.cpp.o -c /<>/deps/sdsl-lite/lib/construct_lcp.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o -MF CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o.d -o CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o -c /<>/deps/sdsl-lite/lib/construct_lcp_helper.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_sa.cpp.o -MF CMakeFiles/sdsl.dir/construct_sa.cpp.o.d -o CMakeFiles/sdsl.dir/construct_sa.cpp.o -c /<>/deps/sdsl-lite/lib/construct_sa.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/construct_sa_se.cpp.o -MF CMakeFiles/sdsl.dir/construct_sa_se.cpp.o.d -o CMakeFiles/sdsl.dir/construct_sa_se.cpp.o -c /<>/deps/sdsl-lite/lib/construct_sa_se.cpp [ 37%] Building CXX object lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o -MF CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o.d -o CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o -c /<>/deps/sdsl-lite/lib/csa_alphabet_strategy.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/io.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/io.cpp.o -MF CMakeFiles/sdsl.dir/io.cpp.o.d -o CMakeFiles/sdsl.dir/io.cpp.o -c /<>/deps/sdsl-lite/lib/io.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o -MF CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o.d -o CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o -c /<>/deps/sdsl-lite/lib/lcp_support_tree.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/louds_tree.cpp.o -MF CMakeFiles/sdsl.dir/louds_tree.cpp.o.d -o CMakeFiles/sdsl.dir/louds_tree.cpp.o -c /<>/deps/sdsl-lite/lib/louds_tree.cpp [ 50%] Building CXX object lib/CMakeFiles/sdsl.dir/memory_management.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/memory_management.cpp.o -MF CMakeFiles/sdsl.dir/memory_management.cpp.o.d -o CMakeFiles/sdsl.dir/memory_management.cpp.o -c /<>/deps/sdsl-lite/lib/memory_management.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o -MF CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o.d -o CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o -c /<>/deps/sdsl-lite/lib/nn_dict_dynamic.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_filebuf.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/ram_filebuf.cpp.o -MF CMakeFiles/sdsl.dir/ram_filebuf.cpp.o.d -o CMakeFiles/sdsl.dir/ram_filebuf.cpp.o -c /<>/deps/sdsl-lite/lib/ram_filebuf.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/ram_fs.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/ram_fs.cpp.o -MF CMakeFiles/sdsl.dir/ram_fs.cpp.o.d -o CMakeFiles/sdsl.dir/ram_fs.cpp.o -c /<>/deps/sdsl-lite/lib/ram_fs.cpp [ 62%] Building CXX object lib/CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o -MF CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o.d -o CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o -c /<>/deps/sdsl-lite/lib/rrr_vector_15.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/sd_vector.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/sd_vector.cpp.o -MF CMakeFiles/sdsl.dir/sd_vector.cpp.o.d -o CMakeFiles/sdsl.dir/sd_vector.cpp.o -c /<>/deps/sdsl-lite/lib/sd_vector.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/sfstream.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/sfstream.cpp.o -MF CMakeFiles/sdsl.dir/sfstream.cpp.o.d -o CMakeFiles/sdsl.dir/sfstream.cpp.o -c /<>/deps/sdsl-lite/lib/sfstream.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/simple_sds.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/simple_sds.cpp.o -MF CMakeFiles/sdsl.dir/simple_sds.cpp.o.d -o CMakeFiles/sdsl.dir/simple_sds.cpp.o -c /<>/deps/sdsl-lite/lib/simple_sds.cpp [ 75%] Building CXX object lib/CMakeFiles/sdsl.dir/structure_tree.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/structure_tree.cpp.o -MF CMakeFiles/sdsl.dir/structure_tree.cpp.o.d -o CMakeFiles/sdsl.dir/structure_tree.cpp.o -c /<>/deps/sdsl-lite/lib/structure_tree.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/uint128_t.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/uint128_t.cpp.o -MF CMakeFiles/sdsl.dir/uint128_t.cpp.o.d -o CMakeFiles/sdsl.dir/uint128_t.cpp.o -c /<>/deps/sdsl-lite/lib/uint128_t.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/uint256_t.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/uint256_t.cpp.o -MF CMakeFiles/sdsl.dir/uint256_t.cpp.o.d -o CMakeFiles/sdsl.dir/uint256_t.cpp.o -c /<>/deps/sdsl-lite/lib/uint256_t.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/util.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/util.cpp.o -MF CMakeFiles/sdsl.dir/util.cpp.o.d -o CMakeFiles/sdsl.dir/util.cpp.o -c /<>/deps/sdsl-lite/lib/util.cpp [ 87%] Building CXX object lib/CMakeFiles/sdsl.dir/wt_helper.cpp.o cd /<>/deps/sdsl-lite/build/lib && /usr/bin/aarch64-linux-gnu-g++ -DMODE_TI -I/<>/deps/sdsl-lite/build/lib/../include -I/<>/deps/sdsl-lite/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -O3 -DNDEBUG -MD -MT lib/CMakeFiles/sdsl.dir/wt_helper.cpp.o -MF CMakeFiles/sdsl.dir/wt_helper.cpp.o.d -o CMakeFiles/sdsl.dir/wt_helper.cpp.o -c /<>/deps/sdsl-lite/lib/wt_helper.cpp [100%] Linking CXX static library libsdsl.a cd /<>/deps/sdsl-lite/build/lib && /usr/bin/cmake -P CMakeFiles/sdsl.dir/cmake_clean_target.cmake cd /<>/deps/sdsl-lite/build/lib && /usr/bin/cmake -E cmake_link_script CMakeFiles/sdsl.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-ar qc libsdsl.a CMakeFiles/sdsl.dir/bits.cpp.o CMakeFiles/sdsl.dir/bp_support_algorithm.cpp.o CMakeFiles/sdsl.dir/coder_elias_delta.cpp.o CMakeFiles/sdsl.dir/coder_elias_gamma.cpp.o CMakeFiles/sdsl.dir/coder_fibonacci.cpp.o CMakeFiles/sdsl.dir/config.cpp.o CMakeFiles/sdsl.dir/construct_config.cpp.o CMakeFiles/sdsl.dir/construct_isa.cpp.o CMakeFiles/sdsl.dir/construct_lcp.cpp.o CMakeFiles/sdsl.dir/construct_lcp_helper.cpp.o CMakeFiles/sdsl.dir/construct_sa.cpp.o CMakeFiles/sdsl.dir/construct_sa_se.cpp.o CMakeFiles/sdsl.dir/csa_alphabet_strategy.cpp.o CMakeFiles/sdsl.dir/io.cpp.o CMakeFiles/sdsl.dir/lcp_support_tree.cpp.o CMakeFiles/sdsl.dir/louds_tree.cpp.o CMakeFiles/sdsl.dir/memory_management.cpp.o CMakeFiles/sdsl.dir/nn_dict_dynamic.cpp.o CMakeFiles/sdsl.dir/ram_filebuf.cpp.o CMakeFiles/sdsl.dir/ram_fs.cpp.o CMakeFiles/sdsl.dir/rrr_vector_15.cpp.o CMakeFiles/sdsl.dir/sd_vector.cpp.o CMakeFiles/sdsl.dir/sfstream.cpp.o CMakeFiles/sdsl.dir/simple_sds.cpp.o CMakeFiles/sdsl.dir/structure_tree.cpp.o CMakeFiles/sdsl.dir/uint128_t.cpp.o CMakeFiles/sdsl.dir/uint256_t.cpp.o CMakeFiles/sdsl.dir/util.cpp.o CMakeFiles/sdsl.dir/wt_helper.cpp.o /usr/bin/aarch64-linux-gnu-ranlib libsdsl.a make[6]: Leaving directory '/<>/deps/sdsl-lite/build' [100%] Built target sdsl make[5]: Leaving directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make[4]: Leaving directory '/<>/deps/sdsl-lite/build' make[3]: Leaving directory '/<>/deps/sdsl-lite/build' Removing old files rm -rf '/<>/include/sdsl/*' rm -f '/<>/lib/libsdsl*' make[3]: Entering directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -S/<>/deps/sdsl-lite -B/<>/deps/sdsl-lite/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles /<>/deps/sdsl-lite/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/depend make[5]: Entering directory '/<>/deps/sdsl-lite/build' cd /<>/deps/sdsl-lite/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/sdsl-lite /<>/deps/sdsl-lite/lib /<>/deps/sdsl-lite/build /<>/deps/sdsl-lite/build/lib /<>/deps/sdsl-lite/build/lib/CMakeFiles/sdsl.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/sdsl-lite/build' make -f lib/CMakeFiles/sdsl.dir/build.make lib/CMakeFiles/sdsl.dir/build make[5]: Entering directory '/<>/deps/sdsl-lite/build' make[5]: Nothing to be done for 'lib/CMakeFiles/sdsl.dir/build'. make[5]: Leaving directory '/<>/deps/sdsl-lite/build' [100%] Built target sdsl make[4]: Leaving directory '/<>/deps/sdsl-lite/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/sdsl-lite/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/sdsl-lite/build' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/sdsl-lite/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /<>/lib/pkgconfig/sdsl-lite.pc -- Installing: /<>/include/sdsl/bit_vector_il.hpp -- Installing: /<>/include/sdsl/bit_vectors.hpp -- Installing: /<>/include/sdsl/bits.hpp -- Installing: /<>/include/sdsl/bp_support.hpp -- Installing: /<>/include/sdsl/bp_support_algorithm.hpp -- Installing: /<>/include/sdsl/bp_support_g.hpp -- Installing: /<>/include/sdsl/bp_support_gg.hpp -- Installing: /<>/include/sdsl/bp_support_sada.hpp -- Installing: /<>/include/sdsl/coder.hpp -- Installing: /<>/include/sdsl/coder_comma.hpp -- Installing: /<>/include/sdsl/coder_elias_delta.hpp -- Installing: /<>/include/sdsl/coder_elias_gamma.hpp -- Installing: /<>/include/sdsl/coder_fibonacci.hpp -- Installing: /<>/include/sdsl/config.hpp -- Installing: /<>/include/sdsl/construct.hpp -- Installing: /<>/include/sdsl/construct_bwt.hpp -- Installing: /<>/include/sdsl/construct_config.hpp -- Installing: /<>/include/sdsl/construct_isa.hpp -- Installing: /<>/include/sdsl/construct_lcp.hpp -- Installing: /<>/include/sdsl/construct_lcp_helper.hpp -- Installing: /<>/include/sdsl/construct_sa.hpp -- Installing: /<>/include/sdsl/construct_sa_se.hpp -- Installing: /<>/include/sdsl/csa_alphabet_strategy.hpp -- Installing: /<>/include/sdsl/csa_bitcompressed.hpp -- Installing: /<>/include/sdsl/csa_sada.hpp -- Installing: /<>/include/sdsl/csa_sampling_strategy.hpp -- Installing: /<>/include/sdsl/csa_wt.hpp -- Installing: /<>/include/sdsl/cst_fully.hpp -- Installing: /<>/include/sdsl/cst_iterators.hpp -- Installing: /<>/include/sdsl/cst_sada.hpp -- Installing: /<>/include/sdsl/cst_sct3.hpp -- Installing: /<>/include/sdsl/dac_vector.hpp -- Installing: /<>/include/sdsl/enc_vector.hpp -- Installing: /<>/include/sdsl/fast_cache.hpp -- Installing: /<>/include/sdsl/hyb_vector.hpp -- Installing: /<>/include/sdsl/int_vector.hpp -- Installing: /<>/include/sdsl/int_vector_buffer.hpp -- Installing: /<>/include/sdsl/int_vector_io_wrappers.hpp -- Installing: /<>/include/sdsl/int_vector_mapper.hpp -- Installing: /<>/include/sdsl/inv_perm_support.hpp -- Installing: /<>/include/sdsl/io.hpp -- Installing: /<>/include/sdsl/iterators.hpp -- Installing: /<>/include/sdsl/k2_treap.hpp -- Installing: /<>/include/sdsl/k2_treap_algorithm.hpp -- Installing: /<>/include/sdsl/k2_treap_helper.hpp -- Installing: /<>/include/sdsl/k2_tree.hpp -- Installing: /<>/include/sdsl/k2_tree_helper.hpp -- Installing: /<>/include/sdsl/lcp.hpp -- Installing: /<>/include/sdsl/lcp_bitcompressed.hpp -- Installing: /<>/include/sdsl/lcp_byte.hpp -- Installing: /<>/include/sdsl/lcp_dac.hpp -- Installing: /<>/include/sdsl/lcp_support_sada.hpp -- Installing: /<>/include/sdsl/lcp_support_tree.hpp -- Installing: /<>/include/sdsl/lcp_support_tree2.hpp -- Installing: /<>/include/sdsl/lcp_vlc.hpp -- Installing: /<>/include/sdsl/lcp_wt.hpp -- Installing: /<>/include/sdsl/louds_tree.hpp -- Installing: /<>/include/sdsl/memory_management.hpp -- Installing: /<>/include/sdsl/nearest_neighbour_dictionary.hpp -- Installing: /<>/include/sdsl/nn_dict_dynamic.hpp -- Installing: /<>/include/sdsl/qsufsort.hpp -- Installing: /<>/include/sdsl/ram_filebuf.hpp -- Installing: /<>/include/sdsl/ram_fs.hpp -- Installing: /<>/include/sdsl/rank_support.hpp -- Installing: /<>/include/sdsl/rank_support_scan.hpp -- Installing: /<>/include/sdsl/rank_support_v.hpp -- Installing: /<>/include/sdsl/rank_support_v5.hpp -- Installing: /<>/include/sdsl/raster_img.hpp -- Installing: /<>/include/sdsl/rle_vector.hpp -- Installing: /<>/include/sdsl/rmq_succinct_sada.hpp -- Installing: /<>/include/sdsl/rmq_succinct_sct.hpp -- Installing: /<>/include/sdsl/rmq_support.hpp -- Installing: /<>/include/sdsl/rmq_support_sparse_table.hpp -- Installing: /<>/include/sdsl/rrr_helper.hpp -- Installing: /<>/include/sdsl/rrr_vector.hpp -- Installing: /<>/include/sdsl/rrr_vector_15.hpp -- Installing: /<>/include/sdsl/sd_vector.hpp -- Installing: /<>/include/sdsl/sdsl_concepts.hpp -- Installing: /<>/include/sdsl/select_support.hpp -- Installing: /<>/include/sdsl/select_support_mcl.hpp -- Installing: /<>/include/sdsl/select_support_scan.hpp -- Installing: /<>/include/sdsl/sfstream.hpp -- Installing: /<>/include/sdsl/simple_sds.hpp -- Installing: /<>/include/sdsl/sorted_int_stack.hpp -- Installing: /<>/include/sdsl/sorted_multi_stack_support.hpp -- Installing: /<>/include/sdsl/sorted_stack_support.hpp -- Installing: /<>/include/sdsl/structure_tree.hpp -- Installing: /<>/include/sdsl/suffix_array_algorithm.hpp -- Installing: /<>/include/sdsl/suffix_array_helper.hpp -- Installing: /<>/include/sdsl/suffix_arrays.hpp -- Installing: /<>/include/sdsl/suffix_tree_algorithm.hpp -- Installing: /<>/include/sdsl/suffix_tree_helper.hpp -- Installing: /<>/include/sdsl/suffix_trees.hpp -- Installing: /<>/include/sdsl/uint128_t.hpp -- Installing: /<>/include/sdsl/uint256_t.hpp -- Installing: /<>/include/sdsl/uintx_t.hpp -- Installing: /<>/include/sdsl/util.hpp -- Installing: /<>/include/sdsl/vectors.hpp -- Installing: /<>/include/sdsl/vlc_vector.hpp -- Installing: /<>/include/sdsl/wavelet_trees.hpp -- Installing: /<>/include/sdsl/wm_int.hpp -- Installing: /<>/include/sdsl/wt_algorithm.hpp -- Installing: /<>/include/sdsl/wt_ap.hpp -- Installing: /<>/include/sdsl/wt_blcd.hpp -- Installing: /<>/include/sdsl/wt_gmr.hpp -- Installing: /<>/include/sdsl/wt_helper.hpp -- Installing: /<>/include/sdsl/wt_huff.hpp -- Installing: /<>/include/sdsl/wt_hutu.hpp -- Installing: /<>/include/sdsl/wt_int.hpp -- Installing: /<>/include/sdsl/wt_pc.hpp -- Installing: /<>/include/sdsl/wt_rlmn.hpp -- Installing: /<>/lib/libsdsl.a make[3]: Leaving directory '/<>/deps/sdsl-lite/build' SUCCESS: sdsl was installed successfully! The sdsl include files are located in '/<>/include'. The library files are located in '/<>/lib'. Sample programs can be found in the examples-directory. Tests in the test-directory A cheat sheet in the extras/cheatsheet-directory. Have fun! Makefile:511: warning: pattern recipe did not update peer target 'lib/libdivsufsort64.a'. Makefile:511: warning: pattern recipe did not update peer target 'lib/libdivsufsort.a'. . ./source_me.sh && cd deps/ssw/src && make && ar rs /<>/lib/libssw.a ssw.o ssw_cpp.o && cp ssw_cpp.h ssw.h /<>/include make[3]: Entering directory '/<>/deps/ssw/src' aarch64-linux-gnu-gcc -c -o ssw.o ssw.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O3 -I. aarch64-linux-gnu-gcc -o ssw_test ssw.o main.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O3 -I. -lm -lz aarch64-linux-gnu-gcc -o example_c ssw.o example.c -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O3 -I. -lm -lz aarch64-linux-gnu-g++ -c -o ssw_cpp.o ssw_cpp.cpp -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O3 -I. cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ aarch64-linux-gnu-g++ -o example_cpp example.cpp ssw.o ssw_cpp.o -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O3 -I. -lm -lz cc1plus: warning: ‘-Werror=’ argument ‘-Werror=implicit-function-declaration’ is not valid for C++ aarch64-linux-gnu-gcc -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -pipe -O3 -I. -fPIC -shared -o libssw.so ssw.c make[3]: Leaving directory '/<>/deps/ssw/src' ar: creating /<>/lib/libssw.a . ./source_me.sh && cp -r deps/gcsa2/include/gcsa /<>/include/ && cd deps/gcsa2 && make directories && make lib/libgcsa2.a && mv lib/libgcsa2.a /<>/lib make[3]: Entering directory '/<>/deps/gcsa2' mkdir -p bin mkdir -p lib mkdir -p obj make[3]: Leaving directory '/<>/deps/gcsa2' make[3]: Entering directory '/<>/deps/gcsa2' /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/dbg.o src/dbg.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/files.o src/files.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gcsa.o src/gcsa.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/lcp.o src/lcp.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/path_graph.o src/path_graph.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/support.o src/support.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp ar rcs lib/libgcsa2.a obj/algorithms.o obj/dbg.o obj/files.o obj/gcsa.o obj/internal.o obj/lcp.o obj/path_graph.o obj/support.o obj/utils.o make[3]: Leaving directory '/<>/deps/gcsa2' . ./source_me.sh && cp -r deps/gbwt/include/gbwt /<>/include/ && cd deps/gbwt && make clean && make && mv lib/libgbwt.a /<>/lib make[3]: Entering directory '/<>/deps/gbwt' rm -rf bin lib obj rm -f *.o *.a build_gbwt build_ri merge_gbwt benchmark metadata_tool remove_seq cd tests && make clean make[4]: Entering directory '/<>/deps/gbwt/tests' rm -f test_bwtmerge test_metadata test_queries test_support test_variants *.o make[4]: Leaving directory '/<>/deps/gbwt/tests' make[3]: Leaving directory '/<>/deps/gbwt' make[3]: Entering directory '/<>/deps/gbwt' mkdir -p bin mkdir -p lib mkdir -p obj /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security 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-DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/bwtmerge.o src/bwtmerge.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/cached_gbwt.o src/cached_gbwt.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/dynamic_gbwt.o src/dynamic_gbwt.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/files.o src/files.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type 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-DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP 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-Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/metadata_tool.o src/metadata_tool.cpp /usr/bin/aarch64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/metadata_tool obj/metadata_tool.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/remove_seq.o src/remove_seq.cpp /usr/bin/aarch64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/remove_seq obj/remove_seq.o lib/libgbwt.a -L/<>/lib -lsdsl -ldivsufsort -ldivsufsort64 rm obj/build_ri.o obj/metadata_tool.o obj/benchmark.o obj/merge_gbwt.o obj/remove_seq.o obj/build_gbwt.o make[3]: Leaving directory '/<>/deps/gbwt' . ./source_me.sh && cd deps/libhandlegraph && rm -Rf build CMakeCache.txt CMakeFiles && mkdir build && cd build && CXXFLAGS="-std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2" cmake -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_PREFIX=/<> -DCMAKE_INSTALL_LIBDIR=lib .. && make && make install -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/aarch64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/aarch64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done libhandlegraph is root project or external_project -- Configuring done (0.4s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/libhandlegraph/build make[3]: Entering directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -S/<>/deps/libhandlegraph -B/<>/deps/libhandlegraph/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles /<>/deps/libhandlegraph/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_objs.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [ 2%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/deletable_handle_graph.cpp [ 5%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o -c /<>/deps/libhandlegraph/src/dfs.cpp [ 8%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/handle_graph.cpp [ 11%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/mutable_handle_graph.cpp [ 14%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o -c /<>/deps/libhandlegraph/src/path_metadata.cpp [ 17%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o -c /<>/deps/libhandlegraph/src/mutable_path_metadata.cpp [ 20%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/path_handle_graph.cpp [ 22%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/path_position_handle_graph.cpp [ 25%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/mutable_path_handle_graph.cpp [ 28%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o -c /<>/deps/libhandlegraph/src/ranked_handle_graph.cpp [ 31%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o -c /<>/deps/libhandlegraph/src/serializable.cpp [ 34%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o -c /<>/deps/libhandlegraph/src/snarl_decomposition.cpp [ 37%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o -c /<>/deps/libhandlegraph/src/trivially_serializable.cpp [ 40%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/types.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/types.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/types.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o -c /<>/deps/libhandlegraph/src/types.cpp [ 42%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o -c /<>/deps/libhandlegraph/src/copy_graph.cpp [ 45%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o -c /<>/deps/libhandlegraph/src/append_graph.cpp [ 48%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o -c /<>/deps/libhandlegraph/src/are_equivalent.cpp [ 51%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o -c /<>/deps/libhandlegraph/src/find_tips.cpp [ 54%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o -c /<>/deps/libhandlegraph/src/topological_sort.cpp [ 57%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o -c /<>/deps/libhandlegraph/src/apply_orientations.cpp [ 60%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o -c /<>/deps/libhandlegraph/src/is_single_stranded.cpp [ 62%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o -c /<>/deps/libhandlegraph/src/count_walks.cpp [ 65%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o -c /<>/deps/libhandlegraph/src/eades_algorithm.cpp [ 68%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o -c /<>/deps/libhandlegraph/src/dagify.cpp In file included from /usr/aarch64-linux-gnu/include/c++/14/aarch64-linux-gnu/bits/c++allocator.h:33, from /usr/aarch64-linux-gnu/include/c++/14/bits/allocator.h:46, from /usr/aarch64-linux-gnu/include/c++/14/vector:63, from /<>/deps/libhandlegraph/src/dagify.cpp:8: In member function ‘void std::__new_allocator<_Tp>::deallocate(_Tp*, size_type) [with _Tp = long int]’, inlined from ‘static void std::allocator_traits >::deallocate(allocator_type&, pointer, size_type) [with _Tp = long int]’ at /usr/aarch64-linux-gnu/include/c++/14/bits/alloc_traits.h:544:23, inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_deallocate(pointer, std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/14/bits/stl_vector.h:389:19, inlined from ‘std::_Vector_base<_Tp, _Alloc>::~_Vector_base() [with _Tp = long int; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/14/bits/stl_vector.h:368:15, inlined from ‘std::vector<_Tp, _Alloc>::~vector() [with _Tp = long int; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/14/bits/stl_vector.h:738:7, inlined from ‘std::unordered_map handlegraph::algorithms::dagify(const handlegraph::HandleGraph*, handlegraph::MutableHandleGraph*, size_t)’ at /<>/deps/libhandlegraph/src/dagify.cpp:445:5: /usr/aarch64-linux-gnu/include/c++/14/bits/new_allocator.h:172:33: warning: ‘void operator delete(void*, std::size_t)’ called on pointer ‘’ with nonzero offset [1, 9223372036854775800] [-Wfree-nonheap-object] 172 | _GLIBCXX_OPERATOR_DELETE(_GLIBCXX_SIZED_DEALLOC(__p, __n)); | ^ In member function ‘_Tp* std::__new_allocator<_Tp>::allocate(size_type, const void*) [with _Tp = long int]’, inlined from ‘static _Tp* std::allocator_traits >::allocate(allocator_type&, size_type) [with _Tp = long int]’ at /usr/aarch64-linux-gnu/include/c++/14/bits/alloc_traits.h:509:28, inlined from ‘std::_Vector_base<_Tp, _Alloc>::pointer std::_Vector_base<_Tp, _Alloc>::_M_allocate(std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/14/bits/stl_vector.h:380:33, inlined from ‘void std::_Vector_base<_Tp, _Alloc>::_M_create_storage(std::size_t) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/14/bits/stl_vector.h:398:44, inlined from ‘std::_Vector_base<_Tp, _Alloc>::_Vector_base(std::size_t, const allocator_type&) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/14/bits/stl_vector.h:334:26, inlined from ‘std::vector<_Tp, _Alloc>::vector(size_type, const value_type&, const allocator_type&) [with _Tp = long int; _Alloc = std::allocator]’ at /usr/aarch64-linux-gnu/include/c++/14/bits/stl_vector.h:571:47, inlined from ‘std::unordered_map handlegraph::algorithms::dagify(const handlegraph::HandleGraph*, handlegraph::MutableHandleGraph*, size_t)’ at /<>/deps/libhandlegraph/src/dagify.cpp:327:85: /usr/aarch64-linux-gnu/include/c++/14/bits/new_allocator.h:151:55: note: returned from ‘void* operator new(std::size_t)’ 151 | return static_cast<_Tp*>(_GLIBCXX_OPERATOR_NEW(__n * sizeof(_Tp))); | ^ [ 71%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o -c /<>/deps/libhandlegraph/src/strongly_connected_components.cpp [ 74%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o -c /<>/deps/libhandlegraph/src/find_shortest_paths.cpp [ 77%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o -c /<>/deps/libhandlegraph/src/dijkstra.cpp [ 80%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o -c /<>/deps/libhandlegraph/src/is_acyclic.cpp [ 82%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o -c /<>/deps/libhandlegraph/src/reverse_complement.cpp [ 85%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o -c /<>/deps/libhandlegraph/src/split_strands.cpp [ 88%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o -c /<>/deps/libhandlegraph/src/chop.cpp [ 91%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o -c /<>/deps/libhandlegraph/src/weakly_connected_components.cpp [ 94%] Building CXX object CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libhandlegraph/src/include -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -std=gnu++14 -fPIC -MD -MT CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o -MF CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o.d -o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o -c /<>/deps/libhandlegraph/src/extend.cpp make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 94%] Built target handlegraph_objs make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_shared.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [ 97%] Linking CXX shared library libhandlegraph.so /usr/bin/cmake -E cmake_link_script CMakeFiles/handlegraph_shared.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-g++ -fPIC -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wl,--dependency-file=CMakeFiles/handlegraph_shared.dir/link.d -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libhandlegraph.so -o libhandlegraph.so CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 97%] Built target handlegraph_shared make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' [100%] Linking CXX static library libhandlegraph.a /usr/bin/cmake -P CMakeFiles/handlegraph_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/handlegraph_static.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-ar qc libhandlegraph.a CMakeFiles/handlegraph_objs.dir/src/deletable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/dfs.cpp.o CMakeFiles/handlegraph_objs.dir/src/handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_metadata.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/path_position_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/mutable_path_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/ranked_handle_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/snarl_decomposition.cpp.o CMakeFiles/handlegraph_objs.dir/src/trivially_serializable.cpp.o CMakeFiles/handlegraph_objs.dir/src/types.cpp.o CMakeFiles/handlegraph_objs.dir/src/copy_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/append_graph.cpp.o CMakeFiles/handlegraph_objs.dir/src/are_equivalent.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_tips.cpp.o CMakeFiles/handlegraph_objs.dir/src/topological_sort.cpp.o CMakeFiles/handlegraph_objs.dir/src/apply_orientations.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_single_stranded.cpp.o CMakeFiles/handlegraph_objs.dir/src/count_walks.cpp.o CMakeFiles/handlegraph_objs.dir/src/eades_algorithm.cpp.o CMakeFiles/handlegraph_objs.dir/src/dagify.cpp.o CMakeFiles/handlegraph_objs.dir/src/strongly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/find_shortest_paths.cpp.o CMakeFiles/handlegraph_objs.dir/src/dijkstra.cpp.o CMakeFiles/handlegraph_objs.dir/src/is_acyclic.cpp.o CMakeFiles/handlegraph_objs.dir/src/reverse_complement.cpp.o CMakeFiles/handlegraph_objs.dir/src/split_strands.cpp.o CMakeFiles/handlegraph_objs.dir/src/chop.cpp.o CMakeFiles/handlegraph_objs.dir/src/weakly_connected_components.cpp.o CMakeFiles/handlegraph_objs.dir/src/extend.cpp.o /usr/bin/aarch64-linux-gnu-ranlib libhandlegraph.a make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [100%] Built target handlegraph_static make[4]: Leaving directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles 0 make[3]: Leaving directory '/<>/deps/libhandlegraph/build' make[3]: Entering directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -S/<>/deps/libhandlegraph -B/<>/deps/libhandlegraph/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles /<>/deps/libhandlegraph/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_objs.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_objs.dir/build.make CMakeFiles/handlegraph_objs.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_objs.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 94%] Built target handlegraph_objs make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_shared.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_shared.dir/build.make CMakeFiles/handlegraph_shared.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_shared.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [ 97%] Built target handlegraph_shared make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/depend make[5]: Entering directory '/<>/deps/libhandlegraph/build' cd /<>/deps/libhandlegraph/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libhandlegraph /<>/deps/libhandlegraph /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build /<>/deps/libhandlegraph/build/CMakeFiles/handlegraph_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libhandlegraph/build' make -f CMakeFiles/handlegraph_static.dir/build.make CMakeFiles/handlegraph_static.dir/build make[5]: Entering directory '/<>/deps/libhandlegraph/build' make[5]: Nothing to be done for 'CMakeFiles/handlegraph_static.dir/build'. make[5]: Leaving directory '/<>/deps/libhandlegraph/build' [100%] Built target handlegraph_static make[4]: Leaving directory '/<>/deps/libhandlegraph/build' /usr/bin/cmake -E cmake_progress_start /<>/deps/libhandlegraph/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/libhandlegraph/build' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/libhandlegraph/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /<>/lib/libhandlegraph.so -- Installing: /<>/lib/libhandlegraph.a -- Installing: /<>/include/handlegraph -- Installing: /<>/include/handlegraph/serializable.hpp -- Installing: /<>/include/handlegraph/util.hpp -- Installing: /<>/include/handlegraph/types.hpp -- Installing: /<>/include/handlegraph/trivially_serializable.hpp -- Installing: /<>/include/handlegraph/snarl_decomposition.hpp -- Installing: /<>/include/handlegraph/serializable_handle_graph.hpp -- Installing: /<>/include/handlegraph/path_position_handle_graph.hpp -- Installing: /<>/include/handlegraph/path_metadata.hpp -- Installing: /<>/include/handlegraph/path_handle_graph.hpp -- Installing: /<>/include/handlegraph/named_node_back_translation.hpp -- Installing: /<>/include/handlegraph/mutable_path_mutable_handle_graph.hpp -- Installing: /<>/include/handlegraph/mutable_path_metadata.hpp -- Installing: /<>/include/handlegraph/mutable_path_handle_graph.hpp -- Installing: /<>/include/handlegraph/mutable_path_deletable_handle_graph.hpp -- Installing: /<>/include/handlegraph/mutable_handle_graph.hpp -- Installing: /<>/include/handlegraph/iteratee.hpp -- Installing: /<>/include/handlegraph/handle_graph.hpp -- Installing: 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/<>/include/handlegraph/algorithms/find_shortest_paths.hpp -- Installing: /<>/include/handlegraph/algorithms/extend.hpp -- Installing: /<>/include/handlegraph/algorithms/eades_algorithm.hpp -- Installing: /<>/include/handlegraph/algorithms/dijkstra.hpp -- Installing: /<>/include/handlegraph/algorithms/dagify.hpp -- Installing: /<>/include/handlegraph/algorithms/count_walks.hpp -- Installing: /<>/include/handlegraph/algorithms/copy_graph.hpp -- Installing: /<>/include/handlegraph/algorithms/chop.hpp -- Installing: /<>/include/handlegraph/algorithms/are_equivalent.hpp -- Installing: /<>/include/handlegraph/algorithms/apply_orientations.hpp -- Installing: /<>/include/handlegraph/algorithms/append_graph.hpp -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphTargets.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphTargets-noconfig.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphConfig.cmake -- Installing: /<>/lib/cmake/libhandlegraph/libhandlegraphConfigVersion.cmake make[3]: Leaving directory '/<>/deps/libhandlegraph/build' . ./source_me.sh && cp -r deps/gbwtgraph/include/gbwtgraph /<>/include/ && cd deps/gbwtgraph && make clean && make && mv lib/libgbwtgraph.a /<>/lib make[3]: Entering directory '/<>/deps/gbwtgraph' rm -rf bin lib obj rm -f *.o *.a gfa2gbwt cd tests && make clean make[4]: Entering directory '/<>/deps/gbwtgraph/tests' rm -f test_utils test_gbwtgraph test_cached_gbwtgraph test_gfa test_gbz test_minimizer test_index test_algorithms test_path_cover *.o make[4]: Leaving directory '/<>/deps/gbwtgraph/tests' make[3]: Leaving directory '/<>/deps/gbwtgraph' make[3]: Entering directory '/<>/deps/gbwtgraph' mkdir -p bin mkdir -p lib mkdir -p obj /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/algorithms.o src/algorithms.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/cached_gbwtgraph.o src/cached_gbwtgraph.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbwtgraph.o src/gbwtgraph.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbz.o src/gbz.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gfa.o src/gfa.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/internal.o src/internal.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/minimizer.o src/minimizer.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/path_cover.o src/path_cover.cpp /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/utils.o src/utils.cpp ar rcs lib/libgbwtgraph.a obj/algorithms.o obj/cached_gbwtgraph.o obj/gbwtgraph.o obj/gbz.o obj/gfa.o obj/internal.o obj/minimizer.o obj/path_cover.o obj/utils.o /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gfa2gbwt.o src/gfa2gbwt.cpp /usr/bin/aarch64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/gfa2gbwt obj/gfa2gbwt.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/gbz_stats.o src/gbz_stats.cpp /usr/bin/aarch64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/gbz_stats obj/gbz_stats.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 /usr/bin/aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -c -o obj/kmer_freq.o src/kmer_freq.cpp /usr/bin/aarch64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++14 -Wall -Wextra -DNDEBUG -fopenmp -pthread -O3 -ffast-math -funroll-loops -DHAVE_CXA_DEMANGLE -Iinclude -I/<>/include -o bin/kmer_freq obj/kmer_freq.o lib/libgbwtgraph.a -L/<>/lib -lgbwt -lhandlegraph -lsdsl -ldivsufsort -ldivsufsort64 rm obj/kmer_freq.o obj/gbz_stats.o obj/gfa2gbwt.o make[3]: Leaving directory '/<>/deps/gbwtgraph' . ./source_me.sh && cd deps/kff-cpp-api && rm -Rf build && mkdir build && cd build && cmake .. && make && cp kff_io.hpp /<>/include && mv libkff.a /<>/lib -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/aarch64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/aarch64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.4s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/kff-cpp-api/build make[3]: Entering directory '/<>/deps/kff-cpp-api/build' [ 16%] Building CXX object CMakeFiles/kff.dir/kff_io.cpp.o In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:950:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset [24, 248] into destination object ‘buff’ of size 8 947 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset 8 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:950:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset [25, 249] into destination object ‘buff’ of size 8 947 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset 9 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:950:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset [26, 250] into destination object ‘buff’ of size 8 947 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset 10 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:950:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset [27, 251] into destination object ‘buff’ of size 8 947 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset 11 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:950:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset [28, 252] into destination object ‘buff’ of size 8 947 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset 12 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:950:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset [29, 253] into destination object ‘buff’ of size 8 947 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset 13 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:950:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset [30, 254] into destination object ‘buff’ of size 8 947 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset 14 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1167:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset [24, 248] into destination object ‘buff’ of size 8 1164 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset 8 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1167:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset [25, 249] into destination object ‘buff’ of size 8 1164 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset 9 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1167:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset [26, 250] into destination object ‘buff’ of size 8 1164 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset 10 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1167:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset [27, 251] into destination object ‘buff’ of size 8 1164 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset 11 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1167:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset [28, 252] into destination object ‘buff’ of size 8 1164 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset 12 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1167:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset [29, 253] into destination object ‘buff’ of size 8 1164 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset 13 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1167:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset [30, 254] into destination object ‘buff’ of size 8 1164 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset 14 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1170:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset [24, 248] into destination object ‘buff’ of size 8 1164 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset 8 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1170:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset [25, 249] into destination object ‘buff’ of size 8 1164 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset 9 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1170:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset [26, 250] into destination object ‘buff’ of size 8 1164 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset 10 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1170:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset [27, 251] into destination object ‘buff’ of size 8 1164 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset 11 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1170:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset [28, 252] into destination object ‘buff’ of size 8 1164 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset 12 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1170:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset [29, 253] into destination object ‘buff’ of size 8 1164 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset 13 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1170:18: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘void Section_Minimizer::write_compacted_sequence_without_mini(uint8_t*, uint64_t, uint64_t, uint8_t*)’: /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset [30, 254] into destination object ‘buff’ of size 8 1164 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:1164:17: note: at offset 14 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:950:18, inlined from ‘virtual void Section_Raw::copy(Kff_file*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1016:30: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘virtual void Section_Raw::copy(Kff_file*)’: /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset [24, 248] into destination object ‘buff’ of size 8 947 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset 8 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:950:18, inlined from ‘virtual void Section_Raw::copy(Kff_file*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1016:30: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘virtual void Section_Raw::copy(Kff_file*)’: /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset [25, 249] into destination object ‘buff’ of size 8 947 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset 9 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:950:18, inlined from ‘virtual void Section_Raw::copy(Kff_file*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1016:30: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘virtual void Section_Raw::copy(Kff_file*)’: /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset [26, 250] into destination object ‘buff’ of size 8 947 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset 10 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:950:18, inlined from ‘virtual void Section_Raw::copy(Kff_file*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1016:30: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘virtual void Section_Raw::copy(Kff_file*)’: /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset [27, 251] into destination object ‘buff’ of size 8 947 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset 11 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:950:18, inlined from ‘virtual void Section_Raw::copy(Kff_file*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1016:30: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘virtual void Section_Raw::copy(Kff_file*)’: /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset [28, 252] into destination object ‘buff’ of size 8 947 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset 12 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:950:18, inlined from ‘virtual void Section_Raw::copy(Kff_file*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1016:30: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘virtual void Section_Raw::copy(Kff_file*)’: /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset [29, 253] into destination object ‘buff’ of size 8 947 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset 13 into destination object ‘buff’ of size 8 In function ‘void store_big_endian(uint8_t*, size_t, const T&) [with T = long unsigned int]’, inlined from ‘void Section_Raw::write_compacted_sequence(uint8_t*, uint64_t, uint8_t*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:950:18, inlined from ‘virtual void Section_Raw::copy(Kff_file*)’ at /<>/deps/kff-cpp-api/kff_io.cpp:1016:30: /<>/deps/kff-cpp-api/kff_io.cpp:21:25: warning: writing 1 byte into a region of size 0 [-Wstringop-overflow=] 21 | *buff++ = data >> (8 * b); | ~~~~~~~~^~~~~~~~~~~~~~~~~ /<>/deps/kff-cpp-api/kff_io.cpp: In member function ‘virtual void Section_Raw::copy(Kff_file*)’: /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset [30, 254] into destination object ‘buff’ of size 8 947 | uint8_t buff[8]; | ^~~~ /<>/deps/kff-cpp-api/kff_io.cpp:947:17: note: at offset 14 into destination object ‘buff’ of size 8 [ 33%] Linking CXX static library libkff.a [ 33%] Built target kff [ 50%] Building CXX object CMakeFiles/kff_example.dir/main.cpp.o [ 66%] Linking CXX executable kff_example [ 66%] Built target kff_example [ 83%] Building CXX object benchmarks/CMakeFiles/reader_bench.dir/reader.cpp.o [100%] Linking CXX executable reader_bench [100%] Built target reader_bench make[3]: Leaving directory '/<>/deps/kff-cpp-api/build' . ./source_me.sh && cd deps/gssw && make && cp lib/libgssw.a /<>/lib/ && cp src/gssw.h /<>/include/ make[3]: Entering directory '/<>/deps/gssw' aarch64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -g -c -o obj/gssw.o src/gssw.c src/gssw.c: In function ‘gssw_graph_print’: src/gssw.c:1947:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1947 | fprintf(stdout, "GRAPH // node %llu %u %s\n", n->id, n->len, n->seq); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c:1951:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1951 | fprintf(stdout, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c:1951:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1951 | fprintf(stdout, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c: In function ‘gssw_graph_print_stderr’: src/gssw.c:1963:43: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1963 | fprintf(stderr, "GRAPH // node %llu %u %s\n", n->id, n->len, n->seq); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c:1967:41: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1967 | fprintf(stderr, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c:1967:56: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 5 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1967 | fprintf(stderr, "GRAPH \"%llu %s\" -> \"%llu %s\";\n", n->prev[k]->id, n->prev[k]->seq, n->id, n->seq); | ~~~^ ~~~~~ | | | | long long unsigned int uint64_t {aka long unsigned int} | %lu src/gssw.c: In function ‘gssw_graph_print_score_matrices’: src/gssw.c:1978:31: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 1978 | fprintf(out, "node %llu\n", n->id); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_print_graph_cigar’: src/gssw.c:3623:26: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 3623 | fprintf(out, "%llu[", nc->node->id); | ~~~^ ~~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_create_seed_byte’: src/gssw.c:5095:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 5095 | fprintf(stderr, "failing is node %llu\n", prev[k]->id); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_create_seed_word’: src/gssw.c:5130:49: warning: format ‘%llu’ expects argument of type ‘long long unsigned int’, but argument 3 has type ‘uint64_t’ {aka ‘long unsigned int’} [-Wformat=] 5130 | fprintf(stderr, "failing is node %llu\n", prev[k]->id); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long unsigned int | %lu src/gssw.c: In function ‘gssw_sw_software_byte’: src/gssw.c:277:5: warning: ‘__builtin_memcpy’ writing between 18446744071562067984 and 18446744073709551600 bytes into a region of size 9223372036854775807 [-Wstringop-overflow=] 277 | memcpy(scratch, to_unswizzle, size); | ^ In function ‘unswizzle_byte’, inlined from ‘gssw_sw_software_byte’ at src/gssw.c:405:9: src/gssw.c:271:35: note: destination object of size 9223372036854775807 allocated by ‘malloc’ 271 | uint8_t* scratch = (uint8_t*) malloc(size * sizeof(uint8_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/gssw.c: In function ‘gssw_sw_software_word’: src/gssw.c:1117:5: warning: ‘__builtin_memcpy’ writing between 18446744069414584336 and 18446744073709551600 bytes into a region of size 9223372036854775807 [-Wstringop-overflow=] 1117 | memcpy(scratch, to_unswizzle, size * sizeof(int16_t)); | ^ In function ‘unswizzle_word’, inlined from ‘gssw_sw_software_word’ at src/gssw.c:1249:9: src/gssw.c:1111:35: note: destination object of size 9223372036854775807 allocated by ‘malloc’ 1111 | int16_t* scratch = (int16_t*) malloc(size * sizeof(int16_t)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/gssw.c: In function ‘gssw_node_create’: src/gssw.c:4975:5: warning: ‘__builtin_strncpy’ output truncated before terminating nul copying as many bytes from a string as its length [-Wstringop-truncation] 4975 | strncpy(n->seq, seq, len); n->seq[len] = 0; | ^ src/gssw.c:4971:19: note: length computed here 4971 | int32_t len = strlen(seq); | ^~~~~~~~~~~ # Make dest directory aarch64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -g src/example.c -o bin/gssw_example obj/gssw.o -lm -lz aarch64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -g src/example_adj.c -o bin/gssw_example_adj obj/gssw.o -lm -lz aarch64-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wall -O3 -g src/gssw_test.c -o bin/gssw_test obj/gssw.o -lm -lz ar rvs lib/libgssw.a obj/gssw.o ar: creating lib/libgssw.a a - obj/gssw.o make[3]: Leaving directory '/<>/deps/gssw' . ./source_me.sh && cd ./deps/sonLib && kyotoTycoonLib="" make && cp lib/sonLib.a /<>/lib/libsonlib.a && mkdir -p /<>/include/sonLib && cp lib/*.h /<>/include/sonLib make[3]: Entering directory '/<>/deps/sonLib' cd externalTools && make all make[4]: Entering directory '/<>/deps/sonLib/externalTools' cd cutest && make all make[5]: Entering directory '/<>/deps/sonLib/externalTools/cutest' aarch64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -c CuTest.c ar rc cuTest.a *.o ranlib cuTest.a rm -f *.o mv cuTest.a ../../lib/ cp CuTest.h ../../lib/ make[5]: Leaving directory '/<>/deps/sonLib/externalTools/cutest' cd quicktree_1.1 && make all CC="aarch64-linux-gnu-gcc -std=c99" make[5]: Entering directory '/<>/deps/sonLib/externalTools/quicktree_1.1' aarch64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/align.o ./src/align.c aarch64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/cluster.o ./src/cluster.c aarch64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/distancemat.o ./src/distancemat.c ./src/distancemat.c: In function ‘read_phylip_DistanceMatrix’: ./src/distancemat.c:390:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 390 | fscanf( handle, "%s", identifier ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/distancemat.c:397:7: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 397 | fscanf( handle, "%lf", &dist); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/options.o ./src/options.c aarch64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/util.o ./src/util.c aarch64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/sequence.o ./src/sequence.c aarch64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/quicktree.o ./src/quicktree.c aarch64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/buildtree.o ./src/buildtree.c aarch64-linux-gnu-gcc -std=c99 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -c -I./include -O3 -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -o ./obj/tree.o ./src/tree.c ./src/tree.c: In function ‘read_newhampshire_Tnode’: ./src/tree.c:393:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 393 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:406:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 406 | fscanf( handle, "%1s", &c); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:417:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 417 | fscanf( handle, "%1s", &c); /* should be ) */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:420:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 420 | fscanf( handle, "%1s", &c); /* should be : */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c: In function ‘read_newhampshire_Tree’: ./src/tree.c:468:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 468 | fscanf( handle, "("); | ^~~~~~~~~~~~~~~~~~~~ ./src/tree.c:475:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 475 | fscanf( handle, "%1s", &c ); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:484:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 484 | fscanf( handle, "%1s", &c ); /* should be , */ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:493:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 493 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ ./src/tree.c:496:3: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 496 | fscanf( handle, "%1s", &c); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -g -o bin/quicktree ./obj/align.o ./obj/cluster.o ./obj/distancemat.o ./obj/options.o ./obj/util.o ./obj/sequence.o ./obj/quicktree.o ./obj/buildtree.o ./obj/tree.o -lm make[5]: Leaving directory '/<>/deps/sonLib/externalTools/quicktree_1.1' make[4]: Leaving directory '/<>/deps/sonLib/externalTools' cd C && make all make[4]: Entering directory '/<>/deps/sonLib/C' cp inc/avl.h ../lib/avl.h.tmp mv ../lib/avl.h.tmp ../lib/avl.h cp inc/bioioC.h ../lib/bioioC.h.tmp mv ../lib/bioioC.h.tmp ../lib/bioioC.h cp inc/commonC.h ../lib/commonC.h.tmp mv ../lib/commonC.h.tmp ../lib/commonC.h cp inc/fastCMaths.h ../lib/fastCMaths.h.tmp mv ../lib/fastCMaths.h.tmp ../lib/fastCMaths.h cp inc/hashTableC.h ../lib/hashTableC.h.tmp mv ../lib/hashTableC.h.tmp ../lib/hashTableC.h cp inc/hashTableC_itr.h ../lib/hashTableC_itr.h.tmp mv ../lib/hashTableC_itr.h.tmp ../lib/hashTableC_itr.h cp inc/hashTablePrivateC.h ../lib/hashTablePrivateC.h.tmp mv ../lib/hashTablePrivateC.h.tmp ../lib/hashTablePrivateC.h cp inc/jsmn.h ../lib/jsmn.h.tmp mv ../lib/jsmn.h.tmp ../lib/jsmn.h cp inc/pairwiseAlignment.h ../lib/pairwiseAlignment.h.tmp mv ../lib/pairwiseAlignment.h.tmp ../lib/pairwiseAlignment.h cp inc/sonLib.h ../lib/sonLib.h.tmp mv ../lib/sonLib.h.tmp ../lib/sonLib.h cp inc/sonLibAlign.h ../lib/sonLibAlign.h.tmp mv ../lib/sonLibAlign.h.tmp ../lib/sonLibAlign.h cp inc/sonLibCache.h ../lib/sonLibCache.h.tmp mv ../lib/sonLibCache.h.tmp ../lib/sonLibCache.h cp inc/sonLibCommon.h ../lib/sonLibCommon.h.tmp mv ../lib/sonLibCommon.h.tmp ../lib/sonLibCommon.h cp inc/sonLibCompression.h ../lib/sonLibCompression.h.tmp mv ../lib/sonLibCompression.h.tmp ../lib/sonLibCompression.h cp inc/sonLibConnectivity.h ../lib/sonLibConnectivity.h.tmp mv ../lib/sonLibConnectivity.h.tmp ../lib/sonLibConnectivity.h cp inc/sonLibEulerTour.h ../lib/sonLibEulerTour.h.tmp mv ../lib/sonLibEulerTour.h.tmp ../lib/sonLibEulerTour.h cp inc/sonLibExcept.h ../lib/sonLibExcept.h.tmp mv ../lib/sonLibExcept.h.tmp ../lib/sonLibExcept.h cp inc/sonLibFile.h ../lib/sonLibFile.h.tmp mv ../lib/sonLibFile.h.tmp ../lib/sonLibFile.h cp inc/sonLibHash.h ../lib/sonLibHash.h.tmp mv ../lib/sonLibHash.h.tmp ../lib/sonLibHash.h cp inc/sonLibKVDatabase.h ../lib/sonLibKVDatabase.h.tmp mv ../lib/sonLibKVDatabase.h.tmp ../lib/sonLibKVDatabase.h cp inc/sonLibKVDatabaseConf.h ../lib/sonLibKVDatabaseConf.h.tmp mv ../lib/sonLibKVDatabaseConf.h.tmp ../lib/sonLibKVDatabaseConf.h cp inc/sonLibList.h ../lib/sonLibList.h.tmp mv ../lib/sonLibList.h.tmp ../lib/sonLibList.h cp inc/sonLibMath.h ../lib/sonLibMath.h.tmp mv ../lib/sonLibMath.h.tmp ../lib/sonLibMath.h cp inc/sonLibNaiveConnectivity.h ../lib/sonLibNaiveConnectivity.h.tmp mv ../lib/sonLibNaiveConnectivity.h.tmp ../lib/sonLibNaiveConnectivity.h cp inc/sonLibRandom.h ../lib/sonLibRandom.h.tmp mv ../lib/sonLibRandom.h.tmp ../lib/sonLibRandom.h cp inc/sonLibSet.h ../lib/sonLibSet.h.tmp mv ../lib/sonLibSet.h.tmp ../lib/sonLibSet.h cp inc/sonLibSortedSet.h ../lib/sonLibSortedSet.h.tmp mv ../lib/sonLibSortedSet.h.tmp ../lib/sonLibSortedSet.h cp inc/sonLibString.h ../lib/sonLibString.h.tmp mv ../lib/sonLibString.h.tmp ../lib/sonLibString.h cp inc/sonLibTreap.h ../lib/sonLibTreap.h.tmp mv ../lib/sonLibTreap.h.tmp ../lib/sonLibTreap.h cp inc/sonLibTree.h ../lib/sonLibTree.h.tmp mv ../lib/sonLibTree.h.tmp ../lib/sonLibTree.h cp inc/sonLibTuples.h ../lib/sonLibTuples.h.tmp mv ../lib/sonLibTuples.h.tmp ../lib/sonLibTuples.h cp inc/sonLibTypes.h ../lib/sonLibTypes.h.tmp mv ../lib/sonLibTypes.h.tmp ../lib/sonLibTypes.h cp inc/stGraph.h ../lib/stGraph.h.tmp mv ../lib/stGraph.h.tmp ../lib/stGraph.h cp inc/stJson.h ../lib/stJson.h.tmp mv ../lib/stJson.h.tmp ../lib/stJson.h cp inc/stMatrix.h ../lib/stMatrix.h.tmp mv ../lib/stMatrix.h.tmp ../lib/stMatrix.h cp inc/stPhylogeny.h ../lib/stPhylogeny.h.tmp mv ../lib/stPhylogeny.h.tmp ../lib/stPhylogeny.h cp inc/stPosetAlignment.h ../lib/stPosetAlignment.h.tmp mv ../lib/stPosetAlignment.h.tmp ../lib/stPosetAlignment.h cp inc/stSafeC.h ../lib/stSafeC.h.tmp mv ../lib/stSafeC.h.tmp ../lib/stSafeC.h cp inc/stSpimapLayer.h ../lib/stSpimapLayer.h.tmp mv ../lib/stSpimapLayer.h.tmp ../lib/stSpimapLayer.h cp inc/stThreadPool.h ../lib/stThreadPool.h.tmp mv ../lib/stThreadPool.h.tmp ../lib/stThreadPool.h cp inc/stUnionFind.h ../lib/stUnionFind.h.tmp mv ../lib/stUnionFind.h.tmp ../lib/stUnionFind.h aarch64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -I inc -I ../lib/ -c impl/*.c cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/bioioC.c: In function ‘parseInt’: impl/bioioC.c:265:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 265 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:265:15: note: did you mean to dereference the pointer? 265 | while(*string != '\0' && !isspace(**string)) { | ^ impl/bioioC.c: In function ‘parseFloat’: impl/bioioC.c:286:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 286 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:286:15: note: did you mean to dereference the pointer? 286 | while(*string != '\0' && !isspace(**string)) { | ^ impl/bioioC.c: In function ‘parseString’: impl/bioioC.c:307:23: warning: comparison between pointer and zero character constant [-Wpointer-compare] 307 | while(*string != '\0' && !isspace(**string)) { | ^~ impl/bioioC.c:307:15: note: did you mean to dereference the pointer? 307 | while(*string != '\0' && !isspace(**string)) { | ^ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibCompression.c: In function ‘stCompression_compress’: impl/sonLibCompression.c:37:9: warning: ‘LZ4_compress’ is deprecated: use LZ4_compress_default() instead [-Wdeprecated-declarations] 37 | int64_t bytesWritten = LZ4_compress(((char*)data) + inputOffset, buffer+(outputOffset+1), subChunk ? ST_LZ4_CHUNK_SIZE : sizeInBytes - inputOffset); | ^~~~~~~ In file included from /usr/include/lz4hc.h:43, from impl/sonLibCompression.c:15: /usr/include/lz4.h:765:75: note: declared here 765 | LZ4_DEPRECATED("use LZ4_compress_default() instead") LZ4LIB_API int LZ4_compress (const char* src, char* dest, int srcSize); | ^~~~~~~~~~~~ impl/sonLibCompression.c: In function ‘stCompression_decompress’: impl/sonLibCompression.c:60:13: warning: ‘LZ4_uncompress’ is deprecated: use LZ4_decompress_fast() instead [-Wdeprecated-declarations] 60 | int64_t bytesRead = LZ4_uncompress(((char *)compressedData)+inputOffset, | ^~~~~~~ /usr/include/lz4.h:773:68: note: declared here 773 | LZ4_DEPRECATED("use LZ4_decompress_fast() instead") LZ4LIB_API int LZ4_uncompress (const char* source, char* dest, int outputSize); | ^~~~~~~~~~~~~~ impl/sonLibCompression.c:72:17: warning: ‘LZ4_uncompress_unknownOutputSize’ is deprecated: use LZ4_decompress_safe() instead [-Wdeprecated-declarations] 72 | int64_t bytesWritten = LZ4_uncompress_unknownOutputSize(((char *)compressedData)+inputOffset, | ^~~~~~~ /usr/include/lz4.h:774:68: note: declared here 774 | LZ4_DEPRECATED("use LZ4_decompress_safe() instead") LZ4LIB_API int LZ4_uncompress_unknownOutputSize (const char* source, char* dest, int isize, int maxOutputSize); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibConnectivity.c: In function ‘stConnectivity_addEdge’: impl/sonLibConnectivity.c:248:33: warning: pointer ‘component1’ may be used after ‘free’ [-Wuse-after-free] 248 | connectivity->mergeCallback(connectivity->mergeExtraData, component1, component2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In function ‘stConnectedComponent_destruct’, inlined from ‘stConnectivity_addEdge’ at impl/sonLibConnectivity.c:238:3: impl/sonLibConnectivity.c:608:9: note: call to ‘free’ here 608 | free(comp); | ^~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C impl/sonLibTreap.c: In function ‘stTreap_remove’: impl/sonLibTreap.c:331:18: warning: pointer ‘rmnode’ used after ‘free’ [-Wuse-after-free] 331 | stTreap *p = rmnode->parent; | ^ impl/sonLibTreap.c:329:9: note: call to ‘free’ here 329 | free(rmnode); | ^~~~~~~~~~~~ cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C cc1: warning: command-line option ‘-std=c++14’ is valid for C++/ObjC++ but not for C aarch64-linux-gnu-g++ -std=gnu++98 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall -funroll-loops -DNDEBUG -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -I inc -I ../lib/ -c impl/*.cpp ar rc sonLib.a *.o ../externalTools/quicktree_1.1/obj/buildtree.o ../externalTools/quicktree_1.1/obj/cluster.o ../externalTools/quicktree_1.1/obj/distancemat.o ../externalTools/quicktree_1.1/obj/options.o ../externalTools/quicktree_1.1/obj/sequence.o ../externalTools/quicktree_1.1/obj/tree.o ../externalTools/quicktree_1.1/obj/util.o ranlib sonLib.a rm *.o mv sonLib.a ../lib/ aarch64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I inc -I ../lib -o ../bin/sonLibTests.tmp tests/allTests.c tests/sonLib*.c tests/st* ../lib/sonLib.a ../lib/cuTest.a -lz -lm -lm -lstdc++ -lpthread -llz4 mv ../bin/sonLibTests.tmp ../bin/sonLibTests aarch64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I inc -I ../lib -I tests -o ../bin/sonLib_kvDatabaseTest.tmp tests/kvDatabaseTest.c tests/kvDatabaseTestCommon.c ../lib/sonLib.a ../lib/cuTest.a -lz -lm -lm mv ../bin/sonLib_kvDatabaseTest.tmp ../bin/sonLib_kvDatabaseTest aarch64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I inc -I ../lib -o ../bin/sonLib_cigarTest.tmp tests/cigarsTest.c ../lib/sonLib.a -lm mv ../bin/sonLib_cigarTest.tmp ../bin/sonLib_cigarTest aarch64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I../externalTools/quicktree_1.1/include/ -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I inc -I ../lib -o ../bin/sonLib_fastaCTest.tmp tests/fastaCTest.c ../lib/sonLib.a -lm mv ../bin/sonLib_fastaCTest.tmp ../bin/sonLib_fastaCTest make[4]: Leaving directory '/<>/deps/sonLib/C' cp sonLib_daemonize.py ./bin/sonLib_daemonize.py chmod +x ./bin/sonLib_daemonize.py make[3]: Leaving directory '/<>/deps/sonLib' . ./source_me.sh && cd ./deps/pinchesAndCacti && make && cd /<>/./deps/sonLib && cp lib/stPinchesAndCacti.a /<>/lib/libpinchesandcacti.a && cp lib/3EdgeConnected.a /<>/lib/lib3edgeconnected.a && mkdir -p /<>/include/sonLib && cp lib/*.h /<>/include/sonLib make[3]: Entering directory '/<>/deps/pinchesAndCacti' cd externalTools && make all make[4]: Entering directory '/<>/deps/pinchesAndCacti/externalTools' cd threeEdgeConnected && make all make[5]: Entering directory '/<>/deps/pinchesAndCacti/externalTools/threeEdgeConnected' aarch64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I ../..//../sonLib/lib/ -c impl/*.c ar rc 3EdgeConnected.a *.o ranlib 3EdgeConnected.a rm *.o mv 3EdgeConnected.a ../..//../sonLib/lib/ cp inc/*.h ../..//../sonLib/lib/ aarch64-linux-gnu-gcc -std=c99 -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I inc -I../..//../sonLib/lib -o ../..//../sonLib/bin/3EdgeTests tests/*.c ../..//../sonLib/lib/3EdgeConnected.a ../..//../sonLib/lib/sonLib.a ../..//../sonLib/lib/cuTest.a -lz -lm make[5]: Leaving directory '/<>/deps/pinchesAndCacti/externalTools/threeEdgeConnected' make[4]: Leaving directory '/<>/deps/pinchesAndCacti/externalTools' aarch64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -I inc -I .//../sonLib/lib/ -c impl/*.c ar rc stPinchesAndCacti.a *.o ranlib stPinchesAndCacti.a rm *.o mv stPinchesAndCacti.a .//../sonLib/lib/ cp inc/*.h .//../sonLib/lib/ aarch64-linux-gnu-gcc -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -g -Wall --pedantic -funroll-loops -DNDEBUG -I /<>/include -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wl,-z,relro -Wl,-z,now -I inc -I impl -I.//../sonLib/lib -o .//../sonLib/bin/stPinchesAndCactiTests tests/*.c impl/*.c .//../sonLib/lib/sonLib.a .//../sonLib/lib/cuTest.a -lz -lm .//../sonLib/lib/3EdgeConnected.a make[3]: Leaving directory '/<>/deps/pinchesAndCacti' . ./source_me.sh && cd deps/sublinear-Li-Stephens && make clean && INCLUDE_FLAGS="-I/<>/include" make libs && cp lib/libsublinearLS.a /<>/lib/ && mkdir -p /<>/include/sublinearLS && cp src/*.hpp /<>/include/sublinearLS/ make[3]: Entering directory '/<>/deps/sublinear-Li-Stephens' rm -f /<>/deps/sublinear-Li-Stephens/bin/* /<>/deps/sublinear-Li-Stephens/obj/*.o /<>/deps/sublinear-Li-Stephens/obj/test/*.o /<>/deps/sublinear-Li-Stephens/lib/* make[3]: Leaving directory '/<>/deps/sublinear-Li-Stephens' make[3]: Entering directory '/<>/deps/sublinear-Li-Stephens' if [ ! -d /<>/deps/sublinear-Li-Stephens/obj ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/obj; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/obj/test ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/obj/test; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/bin ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/bin; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/lib ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/lib; fi if [ ! -d /<>/deps/sublinear-Li-Stephens/deps ]; then mkdir -p /<>/deps/sublinear-Li-Stephens/deps; fi aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/math.cpp -o /<>/deps/sublinear-Li-Stephens/obj/math.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/reference.cpp -o /<>/deps/sublinear-Li-Stephens/obj/reference.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/probability.cpp -o /<>/deps/sublinear-Li-Stephens/obj/probability.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/input_haplotype.cpp -o /<>/deps/sublinear-Li-Stephens/obj/input_haplotype.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/delay_multiplier.cpp -o /<>/deps/sublinear-Li-Stephens/obj/delay_multiplier.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/DP_map.cpp -o /<>/deps/sublinear-Li-Stephens/obj/DP_map.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/penalty_set.cpp -o /<>/deps/sublinear-Li-Stephens/obj/penalty_set.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++11 -g -Wno-error=return-type -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/allele.cpp -o /<>/deps/sublinear-Li-Stephens/obj/allele.o /<>/deps/sublinear-Li-Stephens/src/allele.cpp: In function ‘char allele::to_char(alleleValue)’: /<>/deps/sublinear-Li-Stephens/src/allele.cpp:20:1: warning: control reaches end of non-void function [-Wreturn-type] 20 | } | ^ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/row_set.cpp -o /<>/deps/sublinear-Li-Stephens/obj/row_set.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++11 -g -Wno-error=return-type -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_node.o /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp: In member function ‘size_t haplotypeStateNode::node_to_child_index(const haplotypeStateNode*) const’: /<>/deps/sublinear-Li-Stephens/src/haplotype_state_node.cpp:96:1: warning: control reaches end of non-void function [-Wreturn-type] 96 | } | ^ aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_state_tree.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_tree.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/haplotype_manager.cpp -o /<>/deps/sublinear-Li-Stephens/obj/haplotype_manager.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/set_of_extensions.cpp -o /<>/deps/sublinear-Li-Stephens/obj/set_of_extensions.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=c++11 -g -I/<>/include -L. -L/<>/deps/sublinear-Li-Stephens/deps/htslib/ -lhts -llzma -lbz2 -lz -lm -lpthread -c /<>/deps/sublinear-Li-Stephens/src/reference_sequence.cpp -o /<>/deps/sublinear-Li-Stephens/obj/reference_sequence.o ar rc /<>/deps/sublinear-Li-Stephens/lib/libsublinearLS.a /<>/deps/sublinear-Li-Stephens/obj/math.o /<>/deps/sublinear-Li-Stephens/obj/reference.o /<>/deps/sublinear-Li-Stephens/obj/probability.o /<>/deps/sublinear-Li-Stephens/obj/input_haplotype.o /<>/deps/sublinear-Li-Stephens/obj/delay_multiplier.o /<>/deps/sublinear-Li-Stephens/obj/DP_map.o /<>/deps/sublinear-Li-Stephens/obj/penalty_set.o /<>/deps/sublinear-Li-Stephens/obj/allele.o /<>/deps/sublinear-Li-Stephens/obj/row_set.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_node.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_state_tree.o /<>/deps/sublinear-Li-Stephens/obj/haplotype_manager.o /<>/deps/sublinear-Li-Stephens/obj/set_of_extensions.o /<>/deps/sublinear-Li-Stephens/obj/reference_sequence.o ranlib /<>/deps/sublinear-Li-Stephens/lib/libsublinearLS.a make[3]: Leaving directory '/<>/deps/sublinear-Li-Stephens' . ./source_me.sh && cd deps/structures && make clean && make lib/libstructures.a && cp lib/libstructures.a /<>/lib/ && cp -r src/include/structures /<>/include/ make[3]: Entering directory '/<>/deps/structures' if [ ! -d bin ]; then mkdir -p bin; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -d lib ]; then mkdir -p lib; fi find bin obj lib -type f -delete make[3]: Leaving directory '/<>/deps/structures' make[3]: Entering directory '/<>/deps/structures' if [ ! -d bin ]; then mkdir -p bin; fi if [ ! -d obj ]; then mkdir -p obj; fi if [ ! -d lib ]; then mkdir -p lib; fi aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -c src/union_find.cpp -o obj/union_find.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -c src/suffix_tree.cpp -o obj/suffix_tree.o aarch64-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -g -O3 -Isrc/include -I /<>/include -I/<>/include/dynamic -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -c src/stable_double.cpp -o obj/stable_double.o rm -f lib/libstructures.a ar rs lib/libstructures.a obj/union_find.o obj/suffix_tree.o obj/stable_double.o ar: creating lib/libstructures.a make[3]: Leaving directory '/<>/deps/structures' rm -f lib/cleaned_old_protobuf* rm -f lib/libproto* lib/pkgconfig/protobuf* bin/protoc rm -Rf include/google/protobuf deps/protobuf touch lib/cleaned_old_protobuf_v003 rm -f /<>/include/vg.pb.h /<>/include/vg/vg.pb.h rm -Rf /<>/include/vg/io/ . ./source_me.sh && export CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp" && export LDFLAGS="-Wl,-z,relro -Wl,-z,now -L/<>/lib" && cd deps/libvgio && rm -Rf CMakeCache.txt CMakeFiles *.cmake install_manifest.txt *.pb.cc *.pb.h *.a && rm -rf build-vg && mkdir build-vg && cd build-vg && PKG_CONFIG_PATH=/<>/lib/pkgconfig: cmake -DCMAKE_CXX_STANDARD=14 -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_PREFIX_PATH="/usr;/" -DCMAKE_INSTALL_PREFIX=/<> -DCMAKE_INSTALL_LIBDIR=lib .. && make clean && VERBOSE=1 make && make install -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/aarch64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") Building libvgio for C++ 14 -- Found PkgConfig: /usr/bin/aarch64-linux-gnu-pkg-config (found version "1.8.1") -- Could NOT find Protobuf (missing: Protobuf_DIR) No installed Protobuf has registered itself with CMake. -- Found Protobuf: /usr/lib/aarch64-linux-gnu/libprotobuf.so (found version "3.21.12") Found Protobuf using FindProtobuf.cmake -- Found Threads: TRUE Using real Threads library -- Checking for module 'htslib' -- Found htslib, version 1.20 -- Checking for module 'jansson' -- Found jansson, version 2.14 Using installed libhandlegraph -- Configuring done (0.7s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/libvgio/build-vg make[3]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/Makefile2 clean make[4]: Entering directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/link_target.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/clean make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -P CMakeFiles/vgio.dir/cmake_clean.cmake make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make 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make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/link_target.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/link_target.dir/build.make CMakeFiles/link_target.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E create_symlink . vg make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 0%] Built target link_target make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 2%] Running cpp protocol buffer compiler on deps/vg.proto /usr/bin/protoc --cpp_out :/<>/deps/libvgio/build-vg -I /<>/deps/libvgio/deps /<>/deps/libvgio/deps/vg.proto cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio.dir/build.make CMakeFiles/vgio.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 5%] Building CXX object CMakeFiles/vgio.dir/vg.pb.cc.o /usr/bin/aarch64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/vg.pb.cc.o -MF CMakeFiles/vgio.dir/vg.pb.cc.o.d -o CMakeFiles/vgio.dir/vg.pb.cc.o -c /<>/deps/libvgio/build-vg/vg.pb.cc [ 8%] Building CXX object CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o /usr/bin/aarch64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o -MF CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o.d -o CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o -c /<>/deps/libvgio/src/alignment_emitter.cpp [ 11%] Building CXX object CMakeFiles/vgio.dir/src/alignment_io.cpp.o /usr/bin/aarch64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/alignment_io.cpp.o -MF CMakeFiles/vgio.dir/src/alignment_io.cpp.o.d -o CMakeFiles/vgio.dir/src/alignment_io.cpp.o -c /<>/deps/libvgio/src/alignment_io.cpp [ 14%] Building CXX object CMakeFiles/vgio.dir/src/basic_stream.cpp.o /usr/bin/aarch64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/basic_stream.cpp.o -MF CMakeFiles/vgio.dir/src/basic_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/basic_stream.cpp.o -c /<>/deps/libvgio/src/basic_stream.cpp [ 17%] Building CXX object CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o /usr/bin/aarch64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o -MF CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_input_stream.cpp [ 20%] Building CXX object CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o /usr/bin/aarch64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o -MF CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o.d -o CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_output_stream.cpp [ 23%] Building CXX object CMakeFiles/vgio.dir/src/edit.cpp.o /usr/bin/aarch64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/edit.cpp.o -MF CMakeFiles/vgio.dir/src/edit.cpp.o.d -o CMakeFiles/vgio.dir/src/edit.cpp.o -c /<>/deps/libvgio/src/edit.cpp [ 26%] Building CXX object CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o /usr/bin/aarch64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o -MF CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o.d -o CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o -c /<>/deps/libvgio/src/hfile_cppstream.cpp [ 29%] Building CXX object CMakeFiles/vgio.dir/src/json2pb.cpp.o /usr/bin/aarch64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/json2pb.cpp.o -MF CMakeFiles/vgio.dir/src/json2pb.cpp.o.d -o CMakeFiles/vgio.dir/src/json2pb.cpp.o -c /<>/deps/libvgio/src/json2pb.cpp [ 32%] Building CXX object CMakeFiles/vgio.dir/src/message_emitter.cpp.o /usr/bin/aarch64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/message_emitter.cpp.o -MF CMakeFiles/vgio.dir/src/message_emitter.cpp.o.d -o CMakeFiles/vgio.dir/src/message_emitter.cpp.o -c /<>/deps/libvgio/src/message_emitter.cpp [ 35%] Building CXX object CMakeFiles/vgio.dir/src/message_iterator.cpp.o /usr/bin/aarch64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/message_iterator.cpp.o -MF CMakeFiles/vgio.dir/src/message_iterator.cpp.o.d -o CMakeFiles/vgio.dir/src/message_iterator.cpp.o -c /<>/deps/libvgio/src/message_iterator.cpp [ 38%] Building CXX object CMakeFiles/vgio.dir/src/registry.cpp.o /usr/bin/aarch64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/registry.cpp.o -MF CMakeFiles/vgio.dir/src/registry.cpp.o.d -o CMakeFiles/vgio.dir/src/registry.cpp.o -c /<>/deps/libvgio/src/registry.cpp [ 41%] Building CXX object CMakeFiles/vgio.dir/src/stream.cpp.o /usr/bin/aarch64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/stream.cpp.o -MF CMakeFiles/vgio.dir/src/stream.cpp.o.d -o CMakeFiles/vgio.dir/src/stream.cpp.o -c /<>/deps/libvgio/src/stream.cpp [ 44%] Building CXX object CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o /usr/bin/aarch64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o -MF CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o.d -o CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o -c /<>/deps/libvgio/src/stream_multiplexer.cpp [ 47%] Building CXX object CMakeFiles/vgio.dir/src/vpkg.cpp.o /usr/bin/aarch64-linux-gnu-g++ -Dvgio_EXPORTS -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fPIC -fopenmp -MD -MT CMakeFiles/vgio.dir/src/vpkg.cpp.o -MF CMakeFiles/vgio.dir/src/vpkg.cpp.o.d -o CMakeFiles/vgio.dir/src/vpkg.cpp.o -c /<>/deps/libvgio/src/vpkg.cpp [ 50%] Linking CXX shared library libvgio.so /usr/bin/cmake -E cmake_link_script CMakeFiles/vgio.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-g++ -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -Wl,--dependency-file=CMakeFiles/vgio.dir/link.d -Wl,-z,relro -Wl,-z,now -L/<>/lib -shared -Wl,-soname,libvgio.so -o libvgio.so CMakeFiles/vgio.dir/vg.pb.cc.o CMakeFiles/vgio.dir/src/alignment_emitter.cpp.o CMakeFiles/vgio.dir/src/alignment_io.cpp.o CMakeFiles/vgio.dir/src/basic_stream.cpp.o CMakeFiles/vgio.dir/src/blocked_gzip_input_stream.cpp.o CMakeFiles/vgio.dir/src/blocked_gzip_output_stream.cpp.o CMakeFiles/vgio.dir/src/edit.cpp.o CMakeFiles/vgio.dir/src/hfile_cppstream.cpp.o CMakeFiles/vgio.dir/src/json2pb.cpp.o CMakeFiles/vgio.dir/src/message_emitter.cpp.o CMakeFiles/vgio.dir/src/message_iterator.cpp.o CMakeFiles/vgio.dir/src/registry.cpp.o CMakeFiles/vgio.dir/src/stream.cpp.o CMakeFiles/vgio.dir/src/stream_multiplexer.cpp.o CMakeFiles/vgio.dir/src/vpkg.cpp.o /usr/lib/aarch64-linux-gnu/libprotobuf.so -lhts -ljansson /<>/lib/libhandlegraph.so make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [ 50%] Built target vgio make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/depend make[5]: Entering directory '/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' [ 52%] Building CXX object CMakeFiles/vgio_static.dir/vg.pb.cc.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/vg.pb.cc.o -MF CMakeFiles/vgio_static.dir/vg.pb.cc.o.d -o CMakeFiles/vgio_static.dir/vg.pb.cc.o -c /<>/deps/libvgio/build-vg/vg.pb.cc [ 55%] Building CXX object CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o -MF CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o.d -o CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o -c /<>/deps/libvgio/src/alignment_emitter.cpp [ 58%] Building CXX object CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o -MF CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o.d -o CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o -c /<>/deps/libvgio/src/alignment_io.cpp [ 61%] Building CXX object CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o -c /<>/deps/libvgio/src/basic_stream.cpp [ 64%] Building CXX object CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_input_stream.cpp [ 67%] Building CXX object CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o -c /<>/deps/libvgio/src/blocked_gzip_output_stream.cpp [ 70%] Building CXX object CMakeFiles/vgio_static.dir/src/edit.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/edit.cpp.o -MF CMakeFiles/vgio_static.dir/src/edit.cpp.o.d -o CMakeFiles/vgio_static.dir/src/edit.cpp.o -c /<>/deps/libvgio/src/edit.cpp [ 73%] Building CXX object CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o -MF CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o -c /<>/deps/libvgio/src/hfile_cppstream.cpp [ 76%] Building CXX object CMakeFiles/vgio_static.dir/src/json2pb.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/json2pb.cpp.o -MF CMakeFiles/vgio_static.dir/src/json2pb.cpp.o.d -o CMakeFiles/vgio_static.dir/src/json2pb.cpp.o -c /<>/deps/libvgio/src/json2pb.cpp [ 79%] Building CXX object CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o -MF CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o.d -o CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o -c /<>/deps/libvgio/src/message_emitter.cpp [ 82%] Building CXX object CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o -MF CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o.d -o CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o -c /<>/deps/libvgio/src/message_iterator.cpp [ 85%] Building CXX object CMakeFiles/vgio_static.dir/src/registry.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/registry.cpp.o -MF CMakeFiles/vgio_static.dir/src/registry.cpp.o.d -o CMakeFiles/vgio_static.dir/src/registry.cpp.o -c /<>/deps/libvgio/src/registry.cpp [ 88%] Building CXX object CMakeFiles/vgio_static.dir/src/stream.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/stream.cpp.o -MF CMakeFiles/vgio_static.dir/src/stream.cpp.o.d -o CMakeFiles/vgio_static.dir/src/stream.cpp.o -c /<>/deps/libvgio/src/stream.cpp [ 91%] Building CXX object CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o -MF CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o.d -o CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o -c /<>/deps/libvgio/src/stream_multiplexer.cpp [ 94%] Building CXX object CMakeFiles/vgio_static.dir/src/vpkg.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/libvgio/include -I/<>/deps/libvgio/build-vg -I/<>/deps/libvgio/src -isystem /<>/include -Wdate-time -D_FORTIFY_SOURCE=2 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp -std=gnu++14 -fopenmp -MD -MT CMakeFiles/vgio_static.dir/src/vpkg.cpp.o -MF CMakeFiles/vgio_static.dir/src/vpkg.cpp.o.d -o CMakeFiles/vgio_static.dir/src/vpkg.cpp.o -c /<>/deps/libvgio/src/vpkg.cpp [ 97%] Linking CXX static library libvgio.a /usr/bin/cmake -P CMakeFiles/vgio_static.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/vgio_static.dir/link.txt --verbose=1 /usr/bin/aarch64-linux-gnu-ar qc libvgio.a CMakeFiles/vgio_static.dir/vg.pb.cc.o CMakeFiles/vgio_static.dir/src/alignment_emitter.cpp.o CMakeFiles/vgio_static.dir/src/alignment_io.cpp.o CMakeFiles/vgio_static.dir/src/basic_stream.cpp.o CMakeFiles/vgio_static.dir/src/blocked_gzip_input_stream.cpp.o CMakeFiles/vgio_static.dir/src/blocked_gzip_output_stream.cpp.o CMakeFiles/vgio_static.dir/src/edit.cpp.o CMakeFiles/vgio_static.dir/src/hfile_cppstream.cpp.o CMakeFiles/vgio_static.dir/src/json2pb.cpp.o CMakeFiles/vgio_static.dir/src/message_emitter.cpp.o CMakeFiles/vgio_static.dir/src/message_iterator.cpp.o CMakeFiles/vgio_static.dir/src/registry.cpp.o CMakeFiles/vgio_static.dir/src/stream.cpp.o CMakeFiles/vgio_static.dir/src/stream_multiplexer.cpp.o CMakeFiles/vgio_static.dir/src/vpkg.cpp.o /usr/bin/aarch64-linux-gnu-ranlib libvgio.a make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [100%] Built target vgio_static make[4]: Leaving directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake 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'/<>/deps/libvgio/build-vg' cd /<>/deps/libvgio/build-vg && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/libvgio /<>/deps/libvgio /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg /<>/deps/libvgio/build-vg/CMakeFiles/vgio_static.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/libvgio/build-vg' make -f CMakeFiles/vgio_static.dir/build.make CMakeFiles/vgio_static.dir/build make[5]: Entering directory '/<>/deps/libvgio/build-vg' make[5]: Nothing to be done for 'CMakeFiles/vgio_static.dir/build'. make[5]: Leaving directory '/<>/deps/libvgio/build-vg' [100%] Built target vgio_static make[4]: Leaving directory '/<>/deps/libvgio/build-vg' /usr/bin/cmake -E cmake_progress_start /<>/deps/libvgio/build-vg/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[4]: Entering directory '/<>/deps/libvgio/build-vg' make[4]: Nothing to be done for 'preinstall'. make[4]: Leaving directory '/<>/deps/libvgio/build-vg' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "" -- Installing: /<>/lib/libvgio.so -- Installing: /<>/lib/libvgio.a -- Up-to-date: /<>/include -- Installing: /<>/include/vg -- Installing: /<>/include/vg/io -- Installing: /<>/include/vg/io/vpkg.hpp -- Installing: /<>/include/vg/io/stream_multiplexer.hpp -- Installing: /<>/include/vg/io/stream.hpp -- Installing: /<>/include/vg/io/registry.hpp -- Installing: /<>/include/vg/io/protobuf_iterator.hpp -- Installing: /<>/include/vg/io/protobuf_emitter.hpp -- Installing: /<>/include/vg/io/message_iterator.hpp -- Installing: /<>/include/vg/io/message_emitter.hpp -- Installing: /<>/include/vg/io/loader.hpp -- Installing: /<>/include/vg/io/json2pb.h -- Installing: /<>/include/vg/io/hfile_internal.hpp -- Installing: /<>/include/vg/io/hfile_cppstream.hpp -- Installing: /<>/include/vg/io/gafkluge.hpp -- Installing: /<>/include/vg/io/fdstream.hpp -- Installing: /<>/include/vg/io/edit.hpp -- Installing: /<>/include/vg/io/blocked_gzip_output_stream.hpp -- Installing: /<>/include/vg/io/blocked_gzip_input_stream.hpp -- Installing: /<>/include/vg/io/basic_stream.hpp -- Installing: /<>/include/vg/io/alignment_io.hpp -- Installing: /<>/include/vg/io/alignment_emitter.hpp -- Installing: /<>/include/vg/vg.pb.h -- Installing: /<>/lib/cmake/VGio/VGioTargets.cmake -- Installing: /<>/lib/cmake/VGio/VGioTargets-noconfig.cmake -- Installing: /<>/lib/cmake/VGio/VGioConfig.cmake -- Installing: /<>/lib/cmake/VGio/VGioConfigVersion.cmake make[3]: Leaving directory '/<>/deps/libvgio/build-vg' cp deps/BBHash/BooPHF.h /<>/include cp -r deps/sparsepp/sparsepp include/ rm -Rf include/dynamic.hpp include/dynamic # annoyingly doesn't have an install option on the cmake, so we manually move their external dependency headers cd /<>/deps/DYNAMIC && rm -Rf build && mkdir -p build && cd build && export CXXFLAGS="-Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp" && cmake -DCMAKE_VERBOSE_MAKEFILE=ON .. && make CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Setting build type to 'Release' as none was specified. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/aarch64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/aarch64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Building in Release mode -- Configuring done (0.4s) -- Generating done (0.0s) -- Build files have been written to: /<>/deps/DYNAMIC/build make[3]: Entering directory '/<>/deps/DYNAMIC/build' /usr/bin/cmake -S/<>/deps/DYNAMIC -B/<>/deps/DYNAMIC/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/deps/DYNAMIC/build/CMakeFiles /<>/deps/DYNAMIC/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[4]: Entering directory '/<>/deps/DYNAMIC/build' make -f CMakeFiles/debug.dir/build.make CMakeFiles/debug.dir/depend make[5]: Entering directory '/<>/deps/DYNAMIC/build' cd /<>/deps/DYNAMIC/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<>/deps/DYNAMIC /<>/deps/DYNAMIC /<>/deps/DYNAMIC/build /<>/deps/DYNAMIC/build /<>/deps/DYNAMIC/build/CMakeFiles/debug.dir/DependInfo.cmake "--color=" make[5]: Leaving directory '/<>/deps/DYNAMIC/build' make -f CMakeFiles/debug.dir/build.make CMakeFiles/debug.dir/build make[5]: Entering directory '/<>/deps/DYNAMIC/build' [ 6%] Building CXX object CMakeFiles/debug.dir/debug.cpp.o /usr/bin/aarch64-linux-gnu-g++ -I/<>/deps/DYNAMIC/include -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++14 -O3 -Werror=return-type -ggdb -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -fopenmp --std=c++11 -O3 -DNDEBUG -ggdb -Ofast -fstrict-aliasing -DNDEBUG -march=native -MD -MT CMakeFiles/debug.dir/debug.cpp.o -MF CMakeFiles/debug.dir/debug.cpp.o.d -o CMakeFiles/debug.dir/debug.cpp.o -c /<>/deps/DYNAMIC/debug.cpp cc1plus: error: unknown value ‘native’ for ‘-march’ cc1plus: note: valid arguments are: armv8-a armv8.1-a armv8.2-a armv8.3-a armv8.4-a armv8.5-a armv8.6-a armv8.7-a armv8.8-a armv8.9-a armv8-r armv9-a armv9.1-a armv9.2-a armv9.3-a armv9.4-a make[5]: *** [CMakeFiles/debug.dir/build.make:82: CMakeFiles/debug.dir/debug.cpp.o] Error 1 make[5]: Leaving directory '/<>/deps/DYNAMIC/build' make[4]: *** [CMakeFiles/Makefile2:111: CMakeFiles/debug.dir/all] Error 2 make[4]: Leaving directory '/<>/deps/DYNAMIC/build' make[3]: *** [Makefile:94: all] Error 2 make[3]: Leaving directory '/<>/deps/DYNAMIC/build' make[2]: *** [Makefile:607: include/dynamic/dynamic.hpp] Error 2 make[2]: Leaving directory '/<>' dh_auto_build: error: make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc all test/build_graph bin/shuf returned exit code 2 make[1]: *** [debian/rules:39: override_dh_auto_build-arch] Error 25 make[1]: Leaving directory '/<>' make: *** [debian/rules:22: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2024-12-22T00:42:30Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ ------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 17790 Distribution: unstable Fail-Stage: build Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 35 Job: vg_1.59.0+ds-0.1 Machine Architecture: amd64 Package: vg Package-Time: 17846 Source-Version: 1.59.0+ds-0.1 Space: n/a Status: attempted Version: 1.59.0+ds-0.1 -------------------------------------------------------------------------------- Finished at 2024-12-22T00:42:30Z Build needed 04:57:26, no disk space