sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | voronota 1.21.3070-1 (mips64el) Wed, 09 Sep 2020 08:59:25 +0000 | +==============================================================================+ Package: voronota Version: 1.21.3070-1 Source Version: 1.21.3070-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-47333e4f-54b7-4060-9795-7a7af589316c' with '<>' I: NOTICE: Log filtering will replace 'build/voronota-hqxX9n/resolver-VRwDFf' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-09-09-0802.17.pdiff [5272 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-09-09-0802.17.pdiff [3184 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-09-09-0802.17.pdiff [5272 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-09-09-0802.17.pdiff [3184 B] Get:6 http://debian.oregonstate.edu/debian unstable/main mips64el Packages [8055 kB] Fetched 8266 kB in 10s (814 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'voronota' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/voronota.git Please use: git clone https://salsa.debian.org/science-team/voronota.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1233 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main voronota 1.21.3070-1 (dsc) [2048 B] Get:2 http://debian.oregonstate.edu/debian unstable/main voronota 1.21.3070-1 (tar) [1226 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main voronota 1.21.3070-1 (diff) [4552 B] Fetched 1233 kB in 2s (681 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/voronota-hqxX9n/voronota-1.21.3070' with '<>' I: NOTICE: Log filtering will replace 'build/voronota-hqxX9n' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper-compat (= 13), help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [413 B] Get:5 copy:/<>/apt_archive ./ Packages [499 B] Fetched 1869 B in 0s (73.0 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils build-essential cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-10-cross-base-mipsen gcc-9-base:mips64el gcc-9-cross-base-mipsen gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mips64el libgcc-9-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libglib2.0-0 libgomp1:mips64el libgomp1-mips64el-cross libicu67 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.30 libpipeline1 libsigsegv2 libstdc++-10-dev libstdc++-9-dev:mips64el libstdc++-9-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db perl perl-modules-5.30 po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-9-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-9-multilib-mips64el-linux-gnuabi64 gcc-9-doc gcc-9-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el glibc-doc manpages-dev:mips64el gnupg git bzr libstdc++-10-doc libstdc++-9-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:mips64el libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils build-essential cpp-9-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-9-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-10-base:mips64el gcc-10-cross-base-mipsen gcc-9-base:mips64el gcc-9-cross-base-mipsen gcc-9-mips64el-linux-gnuabi64 gcc-9-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libc6:mips64el libc6-dev libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mips64el libcrypt1:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-9-dev:mips64el libgcc-9-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libglib2.0-0 libgomp1:mips64el libgomp1-mips64el-cross libicu67 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.30 libpipeline1 libsigsegv2 libstdc++-10-dev libstdc++-9-dev:mips64el libstdc++-9-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtool libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db perl perl-modules-5.30 po-debconf sbuild-build-depends-main-dummy:mips64el sensible-utils ucf 0 upgraded, 95 newly installed, 0 to remove and 0 not upgraded. Need to get 83.9 MB of archives. After this operation, 362 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36-3 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-10-base mips64el 10.2.0-6 [199 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main mips64el gcc-9-base mips64el 9.3.0-17 [197 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-3 [801 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.35-1cross1 [2352 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-3 [2395 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-6 [1737 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.0-6 [8663 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.1.0-1 [1644 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64-base amd64 9.3.0-8cross1 [196 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mips64el-linux-gnuabi64 amd64 9.3.0-8cross1 [6468 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [16.7 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base-mipsen all 9.3.0-8cross1 [192 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10.2.0-5cross1 [195 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mips64el-cross all 2.31-2cross1 [1336 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mips64el-cross all 10.2.0-5cross1 [69.7 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mips64el-cross all 10.2.0-5cross1 [88.4 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mips64el-cross all 10.2.0-5cross1 [7372 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-mips64el-cross all 9.3.0-8cross1 [248 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mips64el-linux-gnuabi64 amd64 9.3.0-8cross1 [6825 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [1484 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mips64el-cross all 10.2.0-5cross1 [393 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 5.7.10-1cross1 [1237 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.31-2cross1 [2256 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-mips64el-cross all 9.3.0-8cross1 [1726 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-mips64el-linux-gnuabi64 amd64 9.3.0-8cross1 [7050 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:9.2.1-4.1 [1192 B] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-4 [8624 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6 [692 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mips64el all 12.8 [6704 B] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2 [187 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.180-1+b1 [165 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.4-1 [1341 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2 [1007 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.47.16 [181 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-s1 mips64el 10.2.0-6 [69.7 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt1 mips64el 1:4.4.17-1 [93.1 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main mips64el libc6 mips64el 2.31-3 [2571 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main mips64el libatomic1 mips64el 10.2.0-6 [7476 B] Get:89 http://debian.oregonstate.edu/debian unstable/main mips64el linux-libc-dev mips64el 5.8.7-1 [1168 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main mips64el libcrypt-dev mips64el 1:4.4.17-1 [115 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main mips64el libc6-dev mips64el 2.31-3 [2257 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main mips64el libgomp1 mips64el 10.2.0-6 [90.2 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main mips64el libgcc-9-dev mips64el 9.3.0-17 [248 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++6 mips64el 10.2.0-6 [433 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main mips64el libstdc++-9-dev mips64el 9.3.0-17 [1736 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 83.9 MB in 1s (115 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10442 files and directories currently installed.) Preparing to unpack .../00-bsdextrautils_2.36-3_amd64.deb ... Unpacking bsdextrautils (2.36-3) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../01-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../02-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../03-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../04-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../05-perl-modules-5.30_5.30.3-4_all.deb ... Unpacking perl-modules-5.30 (5.30.3-4) ... 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Setting up perl-modules-5.30 (5.30.3-4) ... Setting up bsdextrautils (2.36-3) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-4) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libglib2.0-0:amd64 (2.64.4-1) ... No schema files found: doing nothing. Setting up libmagic1:amd64 (1:5.38-5) ... Setting up gcc-9-mips64el-linux-gnuabi64-base:amd64 (9.3.0-8cross1) ... Setting up linux-libc-dev:mips64el (5.8.7-1) ... Setting up libc6-mips64el-cross (2.31-2cross1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-5) ... Setting up gcc-9-cross-base-mipsen (9.3.0-8cross1) ... Setting up binutils-mips64el-linux-gnuabi64 (2.35-1cross1) ... Setting up gcc-10-base:mips64el (10.2.0-6) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3.1) ... Setting up gcc-10-cross-base-mipsen (10.2.0-5cross1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libperl5.30:amd64 (5.30.3-4) ... Setting up libc6-dev:amd64 (2.31-3) ... Setting up linux-libc-dev-mips64el-cross (5.7.10-1cross1) ... Setting up cpp-9-mips64el-linux-gnuabi64 (9.3.0-8cross1) ... Setting up cpp-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libgomp1-mips64el-cross (10.2.0-5cross1) ... Setting up libgcc-s1-mips64el-cross (10.2.0-5cross1) ... Setting up libelf1:amd64 (0.180-1+b1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:mips64el (9.3.0-17) ... Setting up libatomic1-mips64el-cross (10.2.0-5cross1) ... Setting up libstdc++-10-dev:amd64 (10.2.0-6) ... Setting up g++-10 (10.2.0-6) ... Setting up libtool (2.4.6-14) ... Setting up m4 (1.4.18-4) ... Setting up perl (5.30.3-4) ... Setting up libc6-dev-mips64el-cross (2.31-2cross1) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-11.1) ... Setting up libstdc++6-mips64el-cross (10.2.0-5cross1) ... Setting up g++ (4:10.1.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up libgcc-9-dev-mips64el-cross (9.3.0-8cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.2-3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libstdc++-9-dev-mips64el-cross (9.3.0-8cross1) ... Setting up libdebhelper-perl (13.2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up gcc-9-mips64el-linux-gnuabi64 (9.3.0-8cross1) ... Setting up dpkg-dev (1.20.5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up help2man (1.47.16) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up build-essential (12.8) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up g++-9-mips64el-linux-gnuabi64 (9.3.0-8cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:9.2.1-4.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-mips64el (12.8) ... Setting up libcrypt1:mips64el (1:4.4.17-1) ... Setting up libgcc-s1:mips64el (10.2.0-6) ... Setting up dh-autoreconf (19) ... Setting up libc6:mips64el (2.31-3) ... Setting up libcrypt-dev:mips64el (1:4.4.17-1) ... Setting up libc6-dev:mips64el (2.31-3) ... Setting up libstdc++6:mips64el (10.2.0-6) ... Setting up debhelper (13.2) ... Setting up libgomp1:mips64el (10.2.0-6) ... Setting up libatomic1:mips64el (10.2.0-6) ... Setting up libgcc-9-dev:mips64el (9.3.0-17) ... Setting up libstdc++-9-dev:mips64el (9.3.0-17) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.31-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) amd64 (x86_64) Toolchain package versions: binutils_2.35-2 dpkg-dev_1.20.5 g++-10_10.2.0-6 gcc-10_10.2.0-6 libc6-dev_2.31-3 libstdc++-10-dev_10.2.0-6 libstdc++-9-dev_9.3.0-17 libstdc++-9-dev-mips64el-cross_9.3.0-8cross1 libstdc++6_10.2.0-6 libstdc++6-mips64el-cross_10.2.0-5cross1 linux-libc-dev_5.8.7-1 Package versions: adduser_3.118 apt_2.1.10 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-2 binutils-common_2.35-2 binutils-mips64el-linux-gnuabi64_2.35-1cross1 binutils-x86-64-linux-gnu_2.35-2 bsdextrautils_2.36-3 bsdutils_1:2.36-3 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-3 cpp_4:10.1.0-1 cpp-10_10.2.0-6 cpp-8_8.4.0-4 cpp-9-mips64el-linux-gnuabi64_9.3.0-8cross1 cpp-mips64el-linux-gnuabi64_4:9.2.1-4.1 cross-config_2.6.15-3.1 crossbuild-essential-mips64el_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2 debian-archive-keyring_2019.1 debianutils_4.11.1 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-3 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.1.0-1 g++-10_10.2.0-6 g++-9-mips64el-linux-gnuabi64_9.3.0-8cross1 g++-mips64el-linux-gnuabi64_4:9.2.1-4.1 gcc_4:10.1.0-1 gcc-10_10.2.0-6 gcc-10-base_10.2.0-6 gcc-10-cross-base-mipsen_10.2.0-5cross1 gcc-8-base_8.4.0-4 gcc-9-base_9.3.0-17 gcc-9-cross-base-mipsen_9.3.0-8cross1 gcc-9-mips64el-linux-gnuabi64_9.3.0-8cross1 gcc-9-mips64el-linux-gnuabi64-base_9.3.0-8cross1 gcc-mips64el-linux-gnuabi64_4:9.2.1-4.1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 help2man_1.47.16 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.10 libarchive-zip-perl_1.68-1 libasan5_9.3.0-17 libasan6_10.2.0-6 libatomic1_10.2.0-6 libatomic1-mips64el-cross_10.2.0-5cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.35-2 libblkid1_2.36-3 libbz2-1.0_1.0.8-4 libc-bin_2.31-3 libc-dev-bin_2.31-3 libc6_2.31-3 libc6-dev_2.31-3 libc6-dev-mips64el-cross_2.31-2cross1 libc6-mips64el-cross_2.31-2cross1 libcap-ng0_0.7.9-2.2 libcc1-0_10.2.0-6 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35-2 libctf0_2.35-2 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.253 libdebhelper-perl_13.2 libdebian-dpkgcross-perl_2.6.15-3.1 libdpkg-perl_1.20.5 libelf1_0.180-1+b1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-3 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.0-6 libgcc-9-dev_9.3.0-17 libgcc-9-dev-mips64el-cross_9.3.0-8cross1 libgcc-s1_10.2.0-6 libgcc-s1-mips64el-cross_10.2.0-5cross1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.15-1 libgomp1_10.2.0-6 libgomp1-mips64el-cross_10.2.0-5cross1 libgpg-error0_1.38-2 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libicu67_67.1-4 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.2.0-6 liblocale-gettext-perl_1.07-4 liblsan0_10.2.0-6 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-3 libmpc3_1.2.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-4 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.6-2 libp11-kit0_0.23.21-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.30_5.30.3-4 libpipeline1_1.5.3-1 libquadmath0_10.2.0-6 libseccomp2_2.4.3-1+b1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsmartcols1_2.36-3 libss2_1.45.6-1 libstdc++-10-dev_10.2.0-6 libstdc++-9-dev_9.3.0-17 libstdc++-9-dev-mips64el-cross_9.3.0-8cross1 libstdc++6_10.2.0-6 libstdc++6-mips64el-cross_10.2.0-5cross1 libsub-override-perl_0.09-2 libsystemd0_246.4-1 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10.2.0-6 libubsan1_10.2.0-6 libuchardet0_0.0.7-1 libudev1_246.4-1 libunistring2_0.9.10-4 libuuid1_2.36-3 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-6 libyaml-perl_1.30-1 libzstd1_1.4.5+dfsg-4 linux-libc-dev_5.8.7-1 linux-libc-dev-mips64el-cross_5.7.10-1cross1 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-3 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-4 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-4 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0043 util-linux_2.36-3 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: voronota Binary: voronota Architecture: any Version: 1.21.3070-1 Maintainer: Debian Science Maintainers Uploaders: Andrius Merkys , Homepage: https://bitbucket.org/kliment/voronota Standards-Version: 4.2.1 Vcs-Browser: https://salsa.debian.org/science-team/voronota Vcs-Git: https://salsa.debian.org/science-team/voronota.git Testsuite: autopkgtest Testsuite-Triggers: perl Build-Depends: debhelper-compat (= 13), help2man Package-List: voronota deb science optional arch=any Checksums-Sha1: bb64ba3808b5ed65d9a36619feee13bca975a5a0 1226024 voronota_1.21.3070.orig.tar.xz 5998447497a65eb9256201cf8666fbf5ca156961 4552 voronota_1.21.3070-1.debian.tar.xz Checksums-Sha256: 2ca75ecea48cc0ae4974a47cea02d184d4c0aae61657fb3002e08e64d4b487e6 1226024 voronota_1.21.3070.orig.tar.xz f43f1425c87dfa69ccae4e2bc4ac03f2bd088739c68609f27c543fd2847f2153 4552 voronota_1.21.3070-1.debian.tar.xz Files: bb52083e449cf803352405aceaabb1b7 1226024 voronota_1.21.3070.orig.tar.xz 354a1e6f07584cd7bb94607f3be5acaf 4552 voronota_1.21.3070-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAl9XbmkSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHVlIP/jSCT1x0O+BivWBQwRU375za+Mwbw+3W bZbBoEU6zZJN76sGTA14/GdWjT6Xoc4y0Tm5k6m79Qk1fvOnuyhd51sDVLfe3DjT QcjtC6KpDCMALncoBmaoZITlAMBZ9ctaBrY6BBWS7ya+9+7fOL/S5DFpQzCQAb6v mD0cqwMR49ZRyfZ24Ygydwk2guYf4ixfZyEKsm9zAfRReSgIkaX5WaQhjUuzFqkh wQOu3hBs3iJGPrbMjRdeJs/VXgGebC1VZ9Wdw3eG2SmAD1AvNlkrO4MiHNT+pEFi tC+znYBfIYoMi8FqPIEqZYdm4niRLBTeK3UyBEnnGsGEFfG7jGBWSZZ/VMEoIfF5 h3bgbVAD/j7D9t2y4cTkVcgwGBN74UKp72bb2cQXTRkzcBc8RLWhR4n0n2uSy/qO 2xIrfXoDt3qRKhW7iiCGmeOx4yMZlUBIAblF3qSm72YOrdQz/1Qw1DH5rAFrRZ1x /QppckBb20+Q7a3skkVw8CYd7dxGrCQGjixu4Obl+WpBjsjQLYIRp07Ns6SZtlEw Xk4jGjbbgzvujTSIGGq4HPII1FJOwHTq5rL1p846yJzIrD1LRPdikRU7Gmj89uxY TaNOt/tFfnZCNN46Yx5RFotB61Lrzob3bbvEYrXr+PZTByRluBpdwnc/445DI+uG R/npMmBG1DhQ =YAmT -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.rUxpI3ZT/trustedkeys.kbx': General error gpgv: Signature made Tue Sep 8 11:43:37 2020 UTC gpgv: using RSA key 772292F6F7AC85FAE041D41EE5F43F9C2734F287 gpgv: issuer "merkys@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./voronota_1.21.3070-1.dsc dpkg-source: info: extracting voronota in /<> dpkg-source: info: unpacking voronota_1.21.3070.orig.tar.xz dpkg-source: info: unpacking voronota_1.21.3070-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-47333e4f-54b7-4060-9795-7a7af589316c SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package voronota dpkg-buildpackage: info: source version 1.21.3070-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' Makefile.am:2: warning: source file 'src/voronota.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least a source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, automake: this behaviour will change in future Automake versions: they will automake: unconditionally cause object files to be placed in the same subdirectory automake: of the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. Makefile.am:2: warning: source file 'src/modes/mode_query_balls_clashes.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_get_balls_from_atoms_file.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_reprint_hbp.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_demo_hypercut.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_query_contacts_solvation_values.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_score_contacts_quality.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_compare_files_as_sets.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_query_balls.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_place_membrane.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_score_contacts_potentials_stats.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_compare_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_score_contacts_energy.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_plot_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_score_contacts_potential.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_vectorize_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_split_atoms_file.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_score_scores.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_calculate_mock_solvent.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_score_contacts_global_energy_by_cuts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_query_contacts_interface_exposure_values.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_query_balls_sequences_pairings_stats.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_calculate_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_query_contacts_simulating_unfolding.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_demo_ses.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_rotational_optimization_demo.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_calculate_vertices_in_parallel.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_vectorize_contact_environments.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_demo_blank.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_write_qa_scores_in_casp_format.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_calculate_vertices.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_write_balls_to_atoms_file.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_draw_balls.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_run_script.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_expand_descriptors.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_simulate_potential_for_membrane_proteins.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_draw_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_vectorize_points.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_query_contacts.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_draw_values_bitmap.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_demo_polygon_triangulation.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_score_contacts_energy_stats.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_calculate_path_centralities.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_query_balls_distances.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am:2: warning: source file 'src/modes/mode_query_contacts_depth_values.cpp' is in a subdirectory, Makefile.am:2: but option 'subdir-objects' is disabled Makefile.am: installing './depcomp' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/mips64el-linux-gnuabi64 --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips64el-linux-gnuabi64 configure: loading site script /etc/dpkg-cross/cross-config.mips64el checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for mips64el-linux-gnuabi64-strip... mips64el-linux-gnuabi64-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for mips64el-linux-gnuabi64-g++... mips64el-linux-gnuabi64-g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C++ compiler... yes checking whether mips64el-linux-gnuabi64-g++ accepts -g... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of mips64el-linux-gnuabi64-g++... none checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: executing depfiles commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o voronota.o `test -f 'src/voronota.cpp' || echo './'`src/voronota.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_balls_clashes.o `test -f 'src/modes/mode_query_balls_clashes.cpp' || echo './'`src/modes/mode_query_balls_clashes.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_get_balls_from_atoms_file.o `test -f 'src/modes/mode_get_balls_from_atoms_file.cpp' || echo './'`src/modes/mode_get_balls_from_atoms_file.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_reprint_hbp.o `test -f 'src/modes/mode_reprint_hbp.cpp' || echo './'`src/modes/mode_reprint_hbp.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_demo_hypercut.o `test -f 'src/modes/mode_demo_hypercut.cpp' || echo './'`src/modes/mode_demo_hypercut.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_contacts_solvation_values.o `test -f 'src/modes/mode_query_contacts_solvation_values.cpp' || echo './'`src/modes/mode_query_contacts_solvation_values.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_quality.o `test -f 'src/modes/mode_score_contacts_quality.cpp' || echo './'`src/modes/mode_score_contacts_quality.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_compare_files_as_sets.o `test -f 'src/modes/mode_compare_files_as_sets.cpp' || echo './'`src/modes/mode_compare_files_as_sets.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_balls.o `test -f 'src/modes/mode_query_balls.cpp' || echo './'`src/modes/mode_query_balls.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_place_membrane.o `test -f 'src/modes/mode_place_membrane.cpp' || echo './'`src/modes/mode_place_membrane.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_potentials_stats.o `test -f 'src/modes/mode_score_contacts_potentials_stats.cpp' || echo './'`src/modes/mode_score_contacts_potentials_stats.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_compare_contacts.o `test -f 'src/modes/mode_compare_contacts.cpp' || echo './'`src/modes/mode_compare_contacts.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_energy.o `test -f 'src/modes/mode_score_contacts_energy.cpp' || echo './'`src/modes/mode_score_contacts_energy.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_plot_contacts.o `test -f 'src/modes/mode_plot_contacts.cpp' || echo './'`src/modes/mode_plot_contacts.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_potential.o `test -f 'src/modes/mode_score_contacts_potential.cpp' || echo './'`src/modes/mode_score_contacts_potential.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_vectorize_contacts.o `test -f 'src/modes/mode_vectorize_contacts.cpp' || echo './'`src/modes/mode_vectorize_contacts.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_split_atoms_file.o `test -f 'src/modes/mode_split_atoms_file.cpp' || echo './'`src/modes/mode_split_atoms_file.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_scores.o `test -f 'src/modes/mode_score_scores.cpp' || echo './'`src/modes/mode_score_scores.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_calculate_mock_solvent.o `test -f 'src/modes/mode_calculate_mock_solvent.cpp' || echo './'`src/modes/mode_calculate_mock_solvent.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_global_energy_by_cuts.o `test -f 'src/modes/mode_score_contacts_global_energy_by_cuts.cpp' || echo './'`src/modes/mode_score_contacts_global_energy_by_cuts.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_contacts_interface_exposure_values.o `test -f 'src/modes/mode_query_contacts_interface_exposure_values.cpp' || echo './'`src/modes/mode_query_contacts_interface_exposure_values.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_balls_sequences_pairings_stats.o `test -f 'src/modes/mode_query_balls_sequences_pairings_stats.cpp' || echo './'`src/modes/mode_query_balls_sequences_pairings_stats.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_calculate_contacts.o `test -f 'src/modes/mode_calculate_contacts.cpp' || echo './'`src/modes/mode_calculate_contacts.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_contacts_simulating_unfolding.o `test -f 'src/modes/mode_query_contacts_simulating_unfolding.cpp' || echo './'`src/modes/mode_query_contacts_simulating_unfolding.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_demo_ses.o `test -f 'src/modes/mode_demo_ses.cpp' || echo './'`src/modes/mode_demo_ses.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_rotational_optimization_demo.o `test -f 'src/modes/mode_rotational_optimization_demo.cpp' || echo './'`src/modes/mode_rotational_optimization_demo.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_calculate_vertices_in_parallel.o `test -f 'src/modes/mode_calculate_vertices_in_parallel.cpp' || echo './'`src/modes/mode_calculate_vertices_in_parallel.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_vectorize_contact_environments.o `test -f 'src/modes/mode_vectorize_contact_environments.cpp' || echo './'`src/modes/mode_vectorize_contact_environments.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_demo_blank.o `test -f 'src/modes/mode_demo_blank.cpp' || echo './'`src/modes/mode_demo_blank.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_write_qa_scores_in_casp_format.o `test -f 'src/modes/mode_write_qa_scores_in_casp_format.cpp' || echo './'`src/modes/mode_write_qa_scores_in_casp_format.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_calculate_vertices.o `test -f 'src/modes/mode_calculate_vertices.cpp' || echo './'`src/modes/mode_calculate_vertices.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_write_balls_to_atoms_file.o `test -f 'src/modes/mode_write_balls_to_atoms_file.cpp' || echo './'`src/modes/mode_write_balls_to_atoms_file.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_draw_balls.o `test -f 'src/modes/mode_draw_balls.cpp' || echo './'`src/modes/mode_draw_balls.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_run_script.o `test -f 'src/modes/mode_run_script.cpp' || echo './'`src/modes/mode_run_script.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_expand_descriptors.o `test -f 'src/modes/mode_expand_descriptors.cpp' || echo './'`src/modes/mode_expand_descriptors.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_simulate_potential_for_membrane_proteins.o `test -f 'src/modes/mode_simulate_potential_for_membrane_proteins.cpp' || echo './'`src/modes/mode_simulate_potential_for_membrane_proteins.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_draw_contacts.o `test -f 'src/modes/mode_draw_contacts.cpp' || echo './'`src/modes/mode_draw_contacts.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_vectorize_points.o `test -f 'src/modes/mode_vectorize_points.cpp' || echo './'`src/modes/mode_vectorize_points.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_contacts.o `test -f 'src/modes/mode_query_contacts.cpp' || echo './'`src/modes/mode_query_contacts.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_draw_values_bitmap.o `test -f 'src/modes/mode_draw_values_bitmap.cpp' || echo './'`src/modes/mode_draw_values_bitmap.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_demo_polygon_triangulation.o `test -f 'src/modes/mode_demo_polygon_triangulation.cpp' || echo './'`src/modes/mode_demo_polygon_triangulation.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_score_contacts_energy_stats.o `test -f 'src/modes/mode_score_contacts_energy_stats.cpp' || echo './'`src/modes/mode_score_contacts_energy_stats.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_calculate_path_centralities.o `test -f 'src/modes/mode_calculate_path_centralities.cpp' || echo './'`src/modes/mode_calculate_path_centralities.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_balls_distances.o `test -f 'src/modes/mode_query_balls_distances.cpp' || echo './'`src/modes/mode_query_balls_distances.cpp mips64el-linux-gnuabi64-g++ -DPACKAGE_NAME=\"voronota\" -DPACKAGE_TARNAME=\"voronota\" -DPACKAGE_VERSION=\"1.21.3070\" -DPACKAGE_STRING=\"voronota\ 1.21.3070\" -DPACKAGE_BUGREPORT=\"kliment@ibt.lt\" -DPACKAGE_URL=\"\" -DPACKAGE=\"voronota\" -DVERSION=\"1.21.3070\" -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mode_query_contacts_depth_values.o `test -f 'src/modes/mode_query_contacts_depth_values.cpp' || echo './'`src/modes/mode_query_contacts_depth_values.cpp mips64el-linux-gnuabi64-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -o voronota voronota.o mode_query_balls_clashes.o mode_get_balls_from_atoms_file.o mode_reprint_hbp.o mode_demo_hypercut.o mode_query_contacts_solvation_values.o mode_score_contacts_quality.o mode_compare_files_as_sets.o mode_query_balls.o mode_place_membrane.o mode_score_contacts_potentials_stats.o mode_compare_contacts.o mode_score_contacts_energy.o mode_plot_contacts.o mode_score_contacts_potential.o mode_vectorize_contacts.o mode_split_atoms_file.o mode_score_scores.o mode_calculate_mock_solvent.o mode_score_contacts_global_energy_by_cuts.o mode_query_contacts_interface_exposure_values.o mode_query_balls_sequences_pairings_stats.o mode_calculate_contacts.o mode_query_contacts_simulating_unfolding.o mode_demo_ses.o mode_rotational_optimization_demo.o mode_calculate_vertices_in_parallel.o mode_vectorize_contact_environments.o mode_demo_blank.o mode_write_qa_scores_in_casp_format.o mode_calculate_vertices.o mode_write_balls_to_atoms_file.o mode_draw_balls.o mode_run_script.o mode_expand_descriptors.o mode_simulate_potential_for_membrane_proteins.o mode_draw_contacts.o mode_vectorize_points.o mode_query_contacts.o mode_draw_values_bitmap.o mode_demo_polygon_triangulation.o mode_score_contacts_energy_stats.o mode_calculate_path_centralities.o mode_query_balls_distances.o mode_query_contacts_depth_values.o make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/voronota AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' make[2]: Entering directory '/<>' /bin/mkdir -p '/<>/debian/voronota/usr/bin' /usr/bin/install -c voronota '/<>/debian/voronota/usr/bin' /bin/mkdir -p '/<>/debian/voronota/usr/bin' /usr/bin/install -c voronota-resources voronota-voromqa voronota-contacts voronota-cadscore voronota-volumes voronota-pocket voronota-membrane '/<>/debian/voronota/usr/bin' /bin/mkdir -p '/<>/debian/voronota/usr/share/man/man1' /usr/bin/install -c -m 644 'voronota.man' '/<>/debian/voronota/usr/share/man/man1/voronota.1' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman make[1]: Entering directory '/<>' for BIN in ./voronota-*; \ do \ grep -qle --help ${BIN} && help2man ${BIN} --version-string 1.21.3070 --no-discard-stderr --no-info > ${BIN}.1; \ done dh_installman make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'voronota' in '../voronota_1.21.3070-1_mips64el.deb'. dpkg-deb: building package 'voronota-dbgsym' in '../voronota-dbgsym_1.21.3070-1_mips64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../voronota_1.21.3070-1_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-09-09T09:11:45Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ voronota_1.21.3070-1_mips64el.changes: -------------------------------------- Format: 1.8 Date: Tue, 08 Sep 2020 07:27:59 -0400 Source: voronota Binary: voronota voronota-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 1.21.3070-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Andrius Merkys Description: voronota - Voronoi diagram-based tool to find atom contacts Changes: voronota (1.21.3070-1) unstable; urgency=medium . * New upstream version 1.21.3070 * Excluding prebuilt files. * Bumping debhelper-compat (no changes). * Generating manpages with help2man. * Removing unneeded lintian override. * Adding 'Rules-Requires-Root: no'. Checksums-Sha1: 644edbb84db33c4a86809015b19493bde3378e29 32174964 voronota-dbgsym_1.21.3070-1_mips64el.deb ce865538af49ba9c9187465f896e33e1af19147b 4610 voronota_1.21.3070-1_mips64el.buildinfo a746811499906b4f19db80a7b266d50beea914b3 1939016 voronota_1.21.3070-1_mips64el.deb Checksums-Sha256: f8716282d3a912bde5190d0089de20aa02befce5d64d41b811e2a26b7a6a9492 32174964 voronota-dbgsym_1.21.3070-1_mips64el.deb a926fc78eb78cc8f029a8a14a6c80b00c6518654e1a7c236051b1f105a81bf39 4610 voronota_1.21.3070-1_mips64el.buildinfo 7c43672076c655dfb885bd94adce6a40094f384e1710b1f61af87f12c04e0a49 1939016 voronota_1.21.3070-1_mips64el.deb Files: ad570b8e1c085580032aad17d438167c 32174964 debug optional voronota-dbgsym_1.21.3070-1_mips64el.deb f1e9589ae7e7aeba05daec2d9014b127 4610 science optional voronota_1.21.3070-1_mips64el.buildinfo 74c6c10b3a2db4bbda8cf79d493763c5 1939016 science optional voronota_1.21.3070-1_mips64el.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: voronota Binary: voronota voronota-dbgsym Architecture: mips64el Version: 1.21.3070-1 Checksums-Md5: ad570b8e1c085580032aad17d438167c 32174964 voronota-dbgsym_1.21.3070-1_mips64el.deb 74c6c10b3a2db4bbda8cf79d493763c5 1939016 voronota_1.21.3070-1_mips64el.deb Checksums-Sha1: 644edbb84db33c4a86809015b19493bde3378e29 32174964 voronota-dbgsym_1.21.3070-1_mips64el.deb a746811499906b4f19db80a7b266d50beea914b3 1939016 voronota_1.21.3070-1_mips64el.deb Checksums-Sha256: f8716282d3a912bde5190d0089de20aa02befce5d64d41b811e2a26b7a6a9492 32174964 voronota-dbgsym_1.21.3070-1_mips64el.deb 7c43672076c655dfb885bd94adce6a40094f384e1710b1f61af87f12c04e0a49 1939016 voronota_1.21.3070-1_mips64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 09 Sep 2020 09:11:45 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-3), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-7), binutils (= 2.35-2), binutils-common (= 2.35-2), binutils-x86-64-linux-gnu (= 2.35-2), bsdextrautils (= 2.36-3), bsdutils (= 1:2.36-3), build-essential (= 12.8), bzip2 (= 1.0.8-4), coreutils (= 8.32-3), cpp (= 4:10.1.0-1), cpp-10 (= 10.2.0-6), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2), debianutils (= 4.11.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1), g++ (= 4:10.1.0-1), g++-10 (= 10.2.0-6), gcc (= 4:10.1.0-1), gcc-10 (= 10.2.0-6), gcc-10-base (= 10.2.0-6), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), help2man (= 1.47.16), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-6), libatomic1 (= 10.2.0-6), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.35-2), libblkid1 (= 2.36-3), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-3), libc-dev-bin (= 2.31-3), libc6 (= 2.31-3), libc6-dev (= 2.31-3), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-6), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1), libcrypt1 (= 1:4.4.17-1), libctf-nobfd0 (= 2.35-2), libctf0 (= 2.35-2), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.253), libdebhelper-perl (= 13.2), libdpkg-perl (= 1.20.5), libelf1 (= 0.180-1+b1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-6), libgcc-s1 (= 10.2.0-6), libgcrypt20 (= 1.8.6-2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libglib2.0-0 (= 2.64.4-1), libgmp10 (= 2:6.2.0+dfsg-6), libgomp1 (= 10.2.0-6), libgpg-error0 (= 1.38-2), libicu67 (= 67.1-4), libisl22 (= 0.22.1-1), libitm1 (= 10.2.0-6), liblocale-gettext-perl (= 1.07-4), liblsan0 (= 10.2.0-6), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-3), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.3-1), libquadmath0 (= 10.2.0-6), libseccomp2 (= 2.4.3-1+b1), libselinux1 (= 3.1-2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.36-3), libstdc++-10-dev (= 10.2.0-6), libstdc++6 (= 10.2.0-6), libsub-override-perl (= 0.09-2), libsystemd0 (= 246.4-1), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10.2.0-6), libubsan1 (= 10.2.0-6), libuchardet0 (= 0.0.7-1), libudev1 (= 246.4-1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-3), libxml2 (= 2.9.10+dfsg-6), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.8.7-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-4), tar (= 1.30+dfsg-7), util-linux (= 2.36-3), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1599564479" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ voronota-dbgsym_1.21.3070-1_mips64el.deb ---------------------------------------- new Debian package, version 2.0. size 32174964 bytes: control archive=540 bytes. 394 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: voronota-dbgsym Source: voronota Version: 1.21.3070-1 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Science Maintainers Installed-Size: 32933 Depends: voronota (= 1.21.3070-1) Section: debug Priority: optional Description: debug symbols for voronota Build-Ids: 08a3517a02e273f8e944a0abaac06f023e6ecb3a drwxr-xr-x root/root 0 2020-09-08 11:27 ./ drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/ drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/lib/ drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/lib/debug/.build-id/08/ -rw-r--r-- root/root 33712416 2020-09-08 11:27 ./usr/lib/debug/.build-id/08/a3517a02e273f8e944a0abaac06f023e6ecb3a.debug drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/share/ drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-09-08 11:27 ./usr/share/doc/voronota-dbgsym -> voronota voronota_1.21.3070-1_mips64el.deb --------------------------------- new Debian package, version 2.0. size 1939016 bytes: control archive=1416 bytes. 1249 bytes, 24 lines control 1131 bytes, 17 lines md5sums Package: voronota Version: 1.21.3070-1 Architecture: mips64el Maintainer: Debian Science Maintainers Installed-Size: 12353 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.4), libstdc++6 (>= 9) Section: science Priority: optional Homepage: https://bitbucket.org/kliment/voronota Description: Voronoi diagram-based tool to find atom contacts The analysis of macromolecular structures often requires a comprehensive definition of atomic neighborhoods. Such a definition can be based on the Voronoi diagram of balls, where each ball represents an atom of some van der Waals radius. Voronota is a software tool for finding all the vertices of the Voronoi diagram of balls. Such vertices correspond to the centers of the empty tangent spheres defined by quadruples of balls. Voronota is especially suitable for processing three-dimensional structures of biological macromolecules such as proteins and RNA. . Since version 1.2 Voronota also uses the Voronoi vertices to construct inter-atom contact surfaces and solvent accessible surfaces. Voronota provides tools to query contacts, generate contacts graphics, compare contacts and evaluate quality of protein structural models using contacts. drwxr-xr-x root/root 0 2020-09-08 11:27 ./ drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/ drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/bin/ -rwxr-xr-x root/root 4538352 2020-09-08 11:27 ./usr/bin/voronota -rwxr-xr-x root/root 15580 2020-09-08 11:27 ./usr/bin/voronota-cadscore -rwxr-xr-x root/root 6286 2020-09-08 11:27 ./usr/bin/voronota-contacts -rwxr-xr-x root/root 6189 2020-09-08 11:27 ./usr/bin/voronota-membrane -rwxr-xr-x root/root 15341 2020-09-08 11:27 ./usr/bin/voronota-pocket -rwxr-xr-x root/root 7977431 2020-09-08 11:27 ./usr/bin/voronota-resources -rwxr-xr-x root/root 4414 2020-09-08 11:27 ./usr/bin/voronota-volumes -rwxr-xr-x root/root 59631 2020-09-08 11:27 ./usr/bin/voronota-voromqa drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/share/ drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/share/doc/voronota/ -rw-r--r-- root/root 701 2020-09-08 11:27 ./usr/share/doc/voronota/changelog.Debian.gz -rw-r--r-- root/root 1486 2020-09-08 09:09 ./usr/share/doc/voronota/copyright drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/share/man/ drwxr-xr-x root/root 0 2020-09-08 11:27 ./usr/share/man/man1/ -rw-r--r-- root/root 1055 2020-09-08 11:27 ./usr/share/man/man1/voronota-cadscore.1.gz -rw-r--r-- root/root 697 2020-09-08 11:27 ./usr/share/man/man1/voronota-contacts.1.gz -rw-r--r-- root/root 230 2020-09-08 11:27 ./usr/share/man/man1/voronota-membrane.1.gz -rw-r--r-- root/root 229 2020-09-08 11:27 ./usr/share/man/man1/voronota-pocket.1.gz -rw-r--r-- root/root 591 2020-09-08 11:27 ./usr/share/man/man1/voronota-volumes.1.gz -rw-r--r-- root/root 809 2020-09-08 11:27 ./usr/share/man/man1/voronota-voromqa.1.gz -rw-r--r-- root/root 1066 2020-09-08 11:27 ./usr/share/man/man1/voronota.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [542 B] Get:5 copy:/<>/apt_archive ./ Packages [629 B] Fetched 2134 B in 0s (84.4 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:mips64el t1utils unzip 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. Need to get 7530 kB of archives. After this operation, 22.1 MB of additional disk space will be used. 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[12.7 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1 [198 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b2 [75.1 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.010005-1 [340 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b1 [20.2 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-2 [90.2 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1 [35.6 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.21-8 [84.3 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-1 [83.4 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-25 [172 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.93.0 [1281 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7530 kB in 0s (32.6 MB/s) Selecting previously unselected package readline-common. 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Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.93.0) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-3) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 767488 Build-Time: 703 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 17 Job: voronota_1.21.3070-1 Lintian: pass Machine Architecture: amd64 Package: voronota Package-Time: 740 Source-Version: 1.21.3070-1 Space: 767488 Status: successful Version: 1.21.3070-1 -------------------------------------------------------------------------------- Finished at 2020-09-09T09:11:45Z Build needed 00:12:20, 767488k disk space