sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley

+==============================================================================+
| vt 0.57721+ds-3 (armhf)                      Sun, 25 May 2025 11:04:38 +0000 |
+==============================================================================+

Package: vt
Version: 0.57721+ds-3
Source Version: 0.57721+ds-3
Distribution: unstable
Machine Architecture: amd64
Host Architecture: armhf
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-b74e6953-636c-4669-8151-8000a015537a' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/vt-VT8OLD/resolver-fxbZzO' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://localhost:3142/debian unstable InRelease [208 kB]
Get:2 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
Get:4 http://localhost:3142/debian unstable/main Sources T-2025-05-25-0804.14-F-2025-05-25-0204.17.pdiff [10.6 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2025-05-25-0804.14-F-2025-05-25-0204.17.pdiff [13.2 kB]
Get:4 http://localhost:3142/debian unstable/main Sources T-2025-05-25-0804.14-F-2025-05-25-0204.17.pdiff [10.6 kB]
Get:6 http://localhost:3142/debian unstable/main armhf Packages [9606 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 Packages T-2025-05-25-0804.14-F-2025-05-25-0204.17.pdiff [13.2 kB]
Fetched 9966 kB in 3s (3914 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'vt' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/vt.git
Please use:
git clone https://salsa.debian.org/med-team/vt.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 18.6 MB of source archives.
Get:1 http://localhost:3142/debian unstable/main vt 0.57721+ds-3 (dsc) [2162 B]
Get:2 http://localhost:3142/debian unstable/main vt 0.57721+ds-3 (tar) [18.6 MB]
Get:3 http://localhost:3142/debian unstable/main vt 0.57721+ds-3 (diff) [8092 B]
Fetched 18.6 MB in 1s (22.5 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/vt-VT8OLD/vt-0.57721+ds' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/vt-VT8OLD' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, liblzma-dev, libcurl4-gnutls-dev, libssl-dev, libdeflate-dev, libhts-dev, libpcre2-dev, libsvm-dev, libtclap-dev, r-mathlib, r-base-core, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf
Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, liblzma-dev, libcurl4-gnutls-dev, libssl-dev, libdeflate-dev, libhts-dev, libpcre2-dev, libsvm-dev, libtclap-dev, r-mathlib, r-base-core, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf
dpkg-deb: warning: root directory /<<RESOLVERDIR>>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119
dpkg-deb: hint: you might need to pass --root-owner-group, see <https://wiki.debian.org/Teams/Dpkg/RootlessBuilds> for further details
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [609 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [876 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [919 B]
Fetched 2404 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf
  bsdextrautils ca-certificates comerr-dev:armhf cpp-14-arm-linux-gnueabihf
  cpp-arm-linux-gnueabihf crossbuild-essential-armhf debhelper dh-autoreconf
  dh-strip-nondeterminism dwz fakeroot file fontconfig fontconfig-config
  fonts-dejavu-core fonts-dejavu-mono g++-14-arm-linux-gnueabihf
  g++-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf
  gcc-14-arm-linux-gnueabihf-base gcc-14-base:armhf gcc-14-cross-base
  gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian
  krb5-multidev:armhf libarchive-zip-perl libasan8:armhf libasan8-armhf-cross
  libatomic1:armhf libatomic1-armhf-cross libblas3:armhf libblkid1:armhf
  libbrotli-dev:armhf libbrotli1 libbrotli1:armhf libbz2-1.0:armhf
  libbz2-dev:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf
  libc6-dev-armhf-cross libcairo2:armhf libcom-err2:armhf libcrypt-dev:armhf
  libcrypt1:armhf libcurl3t64-gnutls:armhf libcurl4-gnutls-dev:armhf
  libcurl4t64:armhf libdatrie1:armhf libdb5.3t64:armhf libdebhelper-perl
  libdeflate-dev:armhf libdeflate0:armhf libelf1t64 libevent-2.1-7t64:armhf
  libexpat1 libexpat1:armhf libfakeroot libffi8:armhf
  libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1:armhf
  libfreetype6 libfreetype6:armhf libfribidi0:armhf libgcc-14-dev:armhf
  libgcc-14-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross
  libgfortran5:armhf libglib2.0-0t64:armhf libgmp-dev:armhf libgmp10:armhf
  libgmpxx4ldbl:armhf libgnutls-dane0t64:armhf libgnutls-openssl27t64:armhf
  libgnutls28-dev:armhf libgnutls30t64:armhf libgomp1:armhf
  libgomp1-armhf-cross libgraphite2-3:armhf libgssapi-krb5-2:armhf
  libgssrpc4t64:armhf libharfbuzz0b:armhf libhogweed6t64:armhf
  libhts-dev:armhf libhts3t64:armhf libhtscodecs2:armhf libice6:armhf
  libicu76:armhf libidn2-0:armhf libidn2-dev:armhf libjbig0:armhf
  libjpeg62-turbo:armhf libk5crypto3:armhf libkadm5clnt-mit12:armhf
  libkadm5srv-mit12:armhf libkdb5-10t64:armhf libkeyutils1:armhf
  libkrb5-3:armhf libkrb5-dev:armhf libkrb5support0:armhf liblapack3:armhf
  libldap-dev:armhf libldap2:armhf liblerc4:armhf liblzma-dev:armhf
  liblzma5:armhf libmagic-mgc libmagic1t64 libmount1:armhf libncursesw6
  libnettle8t64:armhf libnghttp2-14:armhf libnghttp2-dev:armhf
  libnghttp3-9:armhf libnghttp3-dev:armhf libngtcp2-16:armhf
  libngtcp2-crypto-gnutls-dev:armhf libngtcp2-crypto-gnutls8:armhf
  libngtcp2-dev:armhf libp11-kit-dev:armhf libp11-kit0:armhf
  libpango-1.0-0:armhf libpangocairo-1.0-0:armhf libpangoft2-1.0-0:armhf
  libpaper-utils libpaper2 libpcre2-16-0:armhf libpcre2-32-0:armhf
  libpcre2-8-0:armhf libpcre2-dev:armhf libpcre2-posix3:armhf libpipeline1
  libpixman-1-0:armhf libpkgconf3 libpng16-16t64 libpng16-16t64:armhf
  libproc2-0 libpsl-dev:armhf libpsl5t64:armhf libreadline8t64:armhf
  librtmp-dev:armhf librtmp1:armhf libsasl2-2:armhf libsasl2-modules-db:armhf
  libselinux1:armhf libsharpyuv0:armhf libsm6:armhf libssh2-1-dev:armhf
  libssh2-1t64:armhf libssl-dev:armhf libssl3t64:armhf libstdc++-14-dev:armhf
  libstdc++-14-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross
  libsvm-dev:armhf libsvm3:armhf libtasn1-6:armhf libtasn1-6-dev:armhf
  libtcl8.6:armhf libtclap-dev:armhf libtext-charwidth-perl
  libtext-wrapi18n-perl libthai-data libthai0:armhf libtiff6:armhf
  libtinfo6:armhf libtirpc-common libtirpc3t64:armhf libtk8.6:armhf libtool
  libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunbound8:armhf
  libunistring5 libunistring5:armhf libuuid1:armhf libwebp7:armhf
  libx11-6:armhf libx11-data libxau6:armhf libxcb-render0:armhf
  libxcb-shm0:armhf libxcb1:armhf libxdmcp6:armhf libxext6:armhf libxft2:armhf
  libxml2 libxrender1:armhf libxss1:armhf libxt6t64:armhf libzstd-dev:armhf
  libzstd1:armhf linux-libc-dev-armhf-cross m4 man-db nettle-dev:armhf openssl
  pkgconf:armhf pkgconf-bin po-debconf procps r-base-core:armhf
  r-mathlib:armhf readline-common sensible-utils ucf unzip x11-common
  xdg-utils zip zlib1g:armhf zlib1g-dev:armhf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc doc-base:armhf
  gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison
  gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev
  gnulib-l10n groff krb5-doc:armhf glibc-doc:armhf libc-l10n:armhf
  locales:armhf libnss-nis:armhf libnss-nisplus:armhf manpages-dev:armhf
  libcurl4-doc:armhf libidn-dev:armhf low-memory-monitor:armhf gmp-doc:armhf
  libgmp10-doc:armhf libmpfr-dev:armhf dns-root-data:armhf gnutls-bin:armhf
  gnutls-doc:armhf krb5-user:armhf liblzma-doc:armhf cryptsetup-bin:armhf
  libnghttp2-doc:armhf p11-kit-doc:armhf libssl-doc:armhf
  libstdc++-14-doc:armhf tcl8.6:armhf tk8.6:armhf libtool-doc gfortran
  | fortran95-compiler gcj-jdk uuid-runtime:armhf m4-doc apparmor less
  www-browser libmail-box-perl elpa-ess:armhf r-doc-info:armhf
  | r-doc-pdf:armhf r-base-html:armhf readline-doc
Recommended packages:
  curl | wget | lynx bzip2-doc:armhf libarchive-cpio-perl
  libglib2.0-data:armhf shared-mime-info:armhf xdg-user-dirs:armhf
  krb5-locales:armhf libldap-common:armhf libgpm2 publicsuffix:armhf
  libsasl2-modules:armhf libtasn1-doc:armhf libltdl-dev libmail-sendmail-perl
  psmisc linux-sysctl-defaults r-recommended:armhf r-base-dev:armhf
  r-doc-html:armhf libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl
  x11-utils x11-xserver-utils
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf
  bsdextrautils ca-certificates comerr-dev:armhf cpp-14-arm-linux-gnueabihf
  cpp-arm-linux-gnueabihf crossbuild-essential-armhf debhelper dh-autoreconf
  dh-strip-nondeterminism dwz fakeroot file fontconfig fontconfig-config
  fonts-dejavu-core fonts-dejavu-mono g++-14-arm-linux-gnueabihf
  g++-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf
  gcc-14-arm-linux-gnueabihf-base gcc-14-base:armhf gcc-14-cross-base
  gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian
  krb5-multidev:armhf libarchive-zip-perl libasan8:armhf libasan8-armhf-cross
  libatomic1:armhf libatomic1-armhf-cross libblas3:armhf libblkid1:armhf
  libbrotli-dev:armhf libbrotli1 libbrotli1:armhf libbz2-1.0:armhf
  libbz2-dev:armhf libc6:armhf libc6-armhf-cross libc6-dev:armhf
  libc6-dev-armhf-cross libcairo2:armhf libcom-err2:armhf libcrypt-dev:armhf
  libcrypt1:armhf libcurl3t64-gnutls:armhf libcurl4-gnutls-dev:armhf
  libcurl4t64:armhf libdatrie1:armhf libdb5.3t64:armhf libdebhelper-perl
  libdeflate-dev:armhf libdeflate0:armhf libelf1t64 libevent-2.1-7t64:armhf
  libexpat1 libexpat1:armhf libfakeroot libffi8:armhf
  libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1:armhf
  libfreetype6 libfreetype6:armhf libfribidi0:armhf libgcc-14-dev:armhf
  libgcc-14-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross
  libgfortran5:armhf libglib2.0-0t64:armhf libgmp-dev:armhf libgmp10:armhf
  libgmpxx4ldbl:armhf libgnutls-dane0t64:armhf libgnutls-openssl27t64:armhf
  libgnutls28-dev:armhf libgnutls30t64:armhf libgomp1:armhf
  libgomp1-armhf-cross libgraphite2-3:armhf libgssapi-krb5-2:armhf
  libgssrpc4t64:armhf libharfbuzz0b:armhf libhogweed6t64:armhf
  libhts-dev:armhf libhts3t64:armhf libhtscodecs2:armhf libice6:armhf
  libicu76:armhf libidn2-0:armhf libidn2-dev:armhf libjbig0:armhf
  libjpeg62-turbo:armhf libk5crypto3:armhf libkadm5clnt-mit12:armhf
  libkadm5srv-mit12:armhf libkdb5-10t64:armhf libkeyutils1:armhf
  libkrb5-3:armhf libkrb5-dev:armhf libkrb5support0:armhf liblapack3:armhf
  libldap-dev:armhf libldap2:armhf liblerc4:armhf liblzma-dev:armhf
  liblzma5:armhf libmagic-mgc libmagic1t64 libmount1:armhf libncursesw6
  libnettle8t64:armhf libnghttp2-14:armhf libnghttp2-dev:armhf
  libnghttp3-9:armhf libnghttp3-dev:armhf libngtcp2-16:armhf
  libngtcp2-crypto-gnutls-dev:armhf libngtcp2-crypto-gnutls8:armhf
  libngtcp2-dev:armhf libp11-kit-dev:armhf libp11-kit0:armhf
  libpango-1.0-0:armhf libpangocairo-1.0-0:armhf libpangoft2-1.0-0:armhf
  libpaper-utils libpaper2 libpcre2-16-0:armhf libpcre2-32-0:armhf
  libpcre2-8-0:armhf libpcre2-dev:armhf libpcre2-posix3:armhf libpipeline1
  libpixman-1-0:armhf libpkgconf3 libpng16-16t64 libpng16-16t64:armhf
  libproc2-0 libpsl-dev:armhf libpsl5t64:armhf libreadline8t64:armhf
  librtmp-dev:armhf librtmp1:armhf libsasl2-2:armhf libsasl2-modules-db:armhf
  libselinux1:armhf libsharpyuv0:armhf libsm6:armhf libssh2-1-dev:armhf
  libssh2-1t64:armhf libssl-dev:armhf libssl3t64:armhf libstdc++-14-dev:armhf
  libstdc++-14-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross
  libsvm-dev:armhf libsvm3:armhf libtasn1-6:armhf libtasn1-6-dev:armhf
  libtcl8.6:armhf libtclap-dev:armhf libtext-charwidth-perl
  libtext-wrapi18n-perl libthai-data libthai0:armhf libtiff6:armhf
  libtinfo6:armhf libtirpc-common libtirpc3t64:armhf libtk8.6:armhf libtool
  libubsan1:armhf libubsan1-armhf-cross libuchardet0 libunbound8:armhf
  libunistring5 libunistring5:armhf libuuid1:armhf libwebp7:armhf
  libx11-6:armhf libx11-data libxau6:armhf libxcb-render0:armhf
  libxcb-shm0:armhf libxcb1:armhf libxdmcp6:armhf libxext6:armhf libxft2:armhf
  libxml2 libxrender1:armhf libxss1:armhf libxt6t64:armhf libzstd-dev:armhf
  libzstd1:armhf linux-libc-dev-armhf-cross m4 man-db nettle-dev:armhf openssl
  pkgconf:armhf pkgconf-bin po-debconf procps r-base-core:armhf
  r-mathlib:armhf readline-common sbuild-build-depends-main-dummy:armhf
  sensible-utils ucf unzip x11-common xdg-utils zip zlib1g:armhf
  zlib1g-dev:armhf
0 upgraded, 225 newly installed, 0 to remove and 0 not upgraded.
Need to get 166 MB of archives.
After this operation, 523 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [984 B]
Get:2 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-8 [65.4 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-8 [881 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 readline-common all 8.2-6 [69.4 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.25 [25.0 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.5.0-1 [1491 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20250419 [162 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB]
Get:10 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB]
Get:11 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-2 [243 kB]
Get:13 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB]
Get:14 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-8 [1187 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.41-5 [94.6 kB]
Get:16 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B]
Get:19 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get:20 http://localhost:3142/debian unstable/main amd64 ucf all 3.0052 [43.3 kB]
Get:21 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-8 [294 kB]
Get:22 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB]
Get:23 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB]
Get:24 http://localhost:3142/debian unstable/main amd64 automake all 1:1.17-4 [862 kB]
Get:25 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB]
Get:26 http://localhost:3142/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.44-3 [1501 kB]
Get:27 http://localhost:3142/debian unstable/main armhf gcc-14-base armhf 14.2.0-19 [49.4 kB]
Get:28 http://localhost:3142/debian unstable/main armhf libgcc-s1 armhf 14.2.0-19 [37.0 kB]
Get:29 http://localhost:3142/debian unstable/main armhf libc6 armhf 2.41-8 [2253 kB]
Get:30 http://localhost:3142/debian unstable/main armhf libcrypt1 armhf 1:4.4.38-1 [95.6 kB]
Get:31 http://localhost:3142/debian unstable/main armhf libcrypt-dev armhf 1:4.4.38-1 [125 kB]
Get:32 http://localhost:3142/debian unstable/main armhf libc6-dev armhf 2.41-8 [1328 kB]
Get:33 http://localhost:3142/debian unstable/main armhf libcom-err2 armhf 1.47.2-1+b1 [23.6 kB]
Get:34 http://localhost:3142/debian unstable/main armhf comerr-dev armhf 2.1-1.47.2-1+b1 [55.4 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 gcc-14-arm-linux-gnueabihf-base amd64 14.2.0-19cross1 [49.6 kB]
Get:36 http://localhost:3142/debian unstable/main amd64 cpp-14-arm-linux-gnueabihf amd64 14.2.0-19cross1 [10.4 MB]
Get:37 http://localhost:3142/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:14.2.0-1 [4856 B]
Get:38 http://localhost:3142/debian unstable/main amd64 gcc-14-cross-base all 14.2.0-19cross1 [44.9 kB]
Get:39 http://localhost:3142/debian unstable/main amd64 libc6-armhf-cross all 2.41-8cross1 [921 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 libgcc-s1-armhf-cross all 14.2.0-19cross1 [36.9 kB]
Get:41 http://localhost:3142/debian unstable/main amd64 libgomp1-armhf-cross all 14.2.0-19cross1 [109 kB]
Get:42 http://localhost:3142/debian unstable/main amd64 libatomic1-armhf-cross all 14.2.0-19cross1 [6936 B]
Get:43 http://localhost:3142/debian unstable/main amd64 libasan8-armhf-cross all 14.2.0-19cross1 [2571 kB]
Get:44 http://localhost:3142/debian unstable/main amd64 libstdc++6-armhf-cross all 14.2.0-19cross1 [559 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 libubsan1-armhf-cross all 14.2.0-19cross1 [1038 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev-armhf-cross all 14.2.0-19cross1 [768 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 gcc-14-arm-linux-gnueabihf amd64 14.2.0-19cross1 [19.8 MB]
Get:48 http://localhost:3142/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:14.2.0-1 [1452 B]
Get:49 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-armhf-cross all 6.12.29-1cross1 [2382 kB]
Get:50 http://localhost:3142/debian unstable/main amd64 libc6-dev-armhf-cross all 2.41-8cross1 [1324 kB]
Get:51 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev-armhf-cross all 14.2.0-19cross1 [2347 kB]
Get:52 http://localhost:3142/debian unstable/main amd64 g++-14-arm-linux-gnueabihf amd64 14.2.0-19cross1 [11.4 MB]
Get:53 http://localhost:3142/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:14.2.0-1 [1208 B]
Get:54 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-armhf all 12.12 [3548 B]
Get:55 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.24.2 [90.9 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-4 [539 kB]
Get:57 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB]
Get:58 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:59 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB]
Get:60 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-2 [8620 B]
Get:61 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB]
Get:62 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB]
Get:63 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB]
Get:64 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-1 [698 kB]
Get:65 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-2 [1680 kB]
Get:66 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:67 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:68 http://localhost:3142/debian unstable/main amd64 debhelper all 13.24.2 [919 kB]
Get:69 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1.2-1 [29.7 kB]
Get:70 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1.2-1 [76.0 kB]
Get:71 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.7.1-1 [108 kB]
Get:72 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
Get:73 http://localhost:3142/debian unstable/main amd64 libpng16-16t64 amd64 1.6.48-1 [282 kB]
Get:74 http://localhost:3142/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB]
Get:75 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB]
Get:76 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB]
Get:77 http://localhost:3142/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.3 [318 kB]
Get:78 http://localhost:3142/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.3 [392 kB]
Get:79 http://localhost:3142/debian unstable/main amd64 fontconfig amd64 2.15.0-2.3 [463 kB]
Get:80 http://localhost:3142/debian unstable/main armhf libkrb5support0 armhf 1.21.3-5 [30.4 kB]
Get:81 http://localhost:3142/debian unstable/main armhf libk5crypto3 armhf 1.21.3-5 [76.0 kB]
Get:82 http://localhost:3142/debian unstable/main armhf libkeyutils1 armhf 1.6.3-6 [8568 B]
Get:83 http://localhost:3142/debian unstable/main armhf libzstd1 armhf 1.5.7+dfsg-1 [264 kB]
Get:84 http://localhost:3142/debian unstable/main armhf zlib1g armhf 1:1.3.dfsg+really1.3.1-1+b1 [75.2 kB]
Get:85 http://localhost:3142/debian unstable/main armhf libssl3t64 armhf 3.5.0-1 [1979 kB]
Get:86 http://localhost:3142/debian unstable/main armhf libkrb5-3 armhf 1.21.3-5 [284 kB]
Get:87 http://localhost:3142/debian unstable/main armhf libgssapi-krb5-2 armhf 1.21.3-5 [116 kB]
Get:88 http://localhost:3142/debian unstable/main armhf libgssrpc4t64 armhf 1.21.3-5 [52.9 kB]
Get:89 http://localhost:3142/debian unstable/main armhf libkadm5clnt-mit12 armhf 1.21.3-5 [37.7 kB]
Get:90 http://localhost:3142/debian unstable/main armhf libkdb5-10t64 armhf 1.21.3-5 [37.6 kB]
Get:91 http://localhost:3142/debian unstable/main armhf libkadm5srv-mit12 armhf 1.21.3-5 [47.6 kB]
Get:92 http://localhost:3142/debian unstable/main armhf krb5-multidev armhf 1.21.3-5 [126 kB]
Get:93 http://localhost:3142/debian unstable/main armhf libasan8 armhf 14.2.0-19 [2583 kB]
Get:94 http://localhost:3142/debian unstable/main armhf libatomic1 armhf 14.2.0-19 [7200 B]
Get:95 http://localhost:3142/debian unstable/main armhf libblas3 armhf 3.12.1-2 [116 kB]
Get:96 http://localhost:3142/debian unstable/main armhf libblkid1 armhf 2.41-5 [155 kB]
Get:97 http://localhost:3142/debian unstable/main armhf libbrotli1 armhf 1.1.0-2+b7 [284 kB]
Get:98 http://localhost:3142/debian unstable/main armhf libbrotli-dev armhf 1.1.0-2+b7 [294 kB]
Get:99 http://localhost:3142/debian unstable/main armhf libbz2-1.0 armhf 1.0.8-6 [35.0 kB]
Get:100 http://localhost:3142/debian unstable/main armhf libbz2-dev armhf 1.0.8-6 [28.7 kB]
Get:101 http://localhost:3142/debian unstable/main armhf libexpat1 armhf 2.7.1-1 [85.6 kB]
Get:102 http://localhost:3142/debian unstable/main armhf libpng16-16t64 armhf 1.6.48-1 [264 kB]
Get:103 http://localhost:3142/debian unstable/main armhf libfreetype6 armhf 2.13.3+dfsg-1 [385 kB]
Get:104 http://localhost:3142/debian unstable/main armhf libfontconfig1 armhf 2.15.0-2.3 [371 kB]
Get:105 http://localhost:3142/debian unstable/main armhf libpixman-1-0 armhf 0.44.0-3 [164 kB]
Get:106 http://localhost:3142/debian unstable/main armhf libxau6 armhf 1:1.0.11-1 [19.7 kB]
Get:107 http://localhost:3142/debian unstable/main armhf libxdmcp6 armhf 1:1.1.5-1 [26.4 kB]
Get:108 http://localhost:3142/debian unstable/main armhf libxcb1 armhf 1.17.0-2+b1 [140 kB]
Get:109 http://localhost:3142/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB]
Get:110 http://localhost:3142/debian unstable/main armhf libx11-6 armhf 2:1.8.12-1 [756 kB]
Get:111 http://localhost:3142/debian unstable/main armhf libxcb-render0 armhf 1.17.0-2+b1 [114 kB]
Get:112 http://localhost:3142/debian unstable/main armhf libxcb-shm0 armhf 1.17.0-2+b1 [105 kB]
Get:113 http://localhost:3142/debian unstable/main armhf libxext6 armhf 2:1.3.4-1+b3 [45.2 kB]
Get:114 http://localhost:3142/debian unstable/main armhf libxrender1 armhf 1:0.9.12-1 [25.0 kB]
Get:115 http://localhost:3142/debian unstable/main armhf libcairo2 armhf 1.18.4-1+b1 [443 kB]
Get:116 http://localhost:3142/debian unstable/main armhf libgmp10 armhf 2:6.3.0+dfsg-3 [512 kB]
Get:117 http://localhost:3142/debian unstable/main armhf libnettle8t64 armhf 3.10.1-1 [312 kB]
Get:118 http://localhost:3142/debian unstable/main armhf libhogweed6t64 armhf 3.10.1-1 [322 kB]
Get:119 http://localhost:3142/debian unstable/main armhf libunistring5 armhf 1.3-2 [441 kB]
Get:120 http://localhost:3142/debian unstable/main armhf libidn2-0 armhf 2.3.8-2 [105 kB]
Get:121 http://localhost:3142/debian unstable/main armhf libffi8 armhf 3.4.8-2 [20.4 kB]
Get:122 http://localhost:3142/debian unstable/main armhf libp11-kit0 armhf 0.25.5-3 [385 kB]
Get:123 http://localhost:3142/debian unstable/main armhf libtasn1-6 armhf 4.20.0-2 [44.4 kB]
Get:124 http://localhost:3142/debian unstable/main armhf libgnutls30t64 armhf 3.8.9-2 [1382 kB]
Get:125 http://localhost:3142/debian unstable/main armhf libdb5.3t64 armhf 5.3.28+dfsg2-9 [602 kB]
Get:126 http://localhost:3142/debian unstable/main armhf libsasl2-modules-db armhf 2.1.28+dfsg1-9 [18.5 kB]
Get:127 http://localhost:3142/debian unstable/main armhf libsasl2-2 armhf 2.1.28+dfsg1-9 [50.4 kB]
Get:128 http://localhost:3142/debian unstable/main armhf libldap2 armhf 2.6.9+dfsg-2 [168 kB]
Get:129 http://localhost:3142/debian unstable/main armhf libnghttp2-14 armhf 1.64.0-1.1 [63.0 kB]
Get:130 http://localhost:3142/debian unstable/main armhf libnghttp3-9 armhf 1.8.0-1 [59.9 kB]
Get:131 http://localhost:3142/debian unstable/main armhf libngtcp2-16 armhf 1.11.0-1 [127 kB]
Get:132 http://localhost:3142/debian unstable/main armhf libngtcp2-crypto-gnutls8 armhf 1.11.0-1 [26.7 kB]
Get:133 http://localhost:3142/debian unstable/main armhf libpsl5t64 armhf 0.21.2-1.1+b1 [55.8 kB]
Get:134 http://localhost:3142/debian unstable/main armhf librtmp1 armhf 2.4+20151223.gitfa8646d.1-2+b5 [53.2 kB]
Get:135 http://localhost:3142/debian unstable/main armhf libssh2-1t64 armhf 1.11.1-1 [227 kB]
Get:136 http://localhost:3142/debian unstable/main armhf libcurl3t64-gnutls armhf 8.13.0-5 [324 kB]
Get:137 http://localhost:3142/debian unstable/main armhf libevent-2.1-7t64 armhf 2.1.12-stable-10+b1 [164 kB]
Get:138 http://localhost:3142/debian unstable/main armhf libunbound8 armhf 1.22.0-1+b1 [539 kB]
Get:139 http://localhost:3142/debian unstable/main armhf libgnutls-dane0t64 armhf 3.8.9-2 [446 kB]
Get:140 http://localhost:3142/debian unstable/main armhf libgnutls-openssl27t64 armhf 3.8.9-2 [446 kB]
Get:141 http://localhost:3142/debian unstable/main armhf libidn2-dev armhf 2.3.8-2 [97.6 kB]
Get:142 http://localhost:3142/debian unstable/main armhf libp11-kit-dev armhf 0.25.5-3 [208 kB]
Get:143 http://localhost:3142/debian unstable/main armhf libtasn1-6-dev armhf 4.20.0-2 [93.4 kB]
Get:144 http://localhost:3142/debian unstable/main armhf libstdc++6 armhf 14.2.0-19 [607 kB]
Get:145 http://localhost:3142/debian unstable/main armhf libgmpxx4ldbl armhf 2:6.3.0+dfsg-3 [328 kB]
Get:146 http://localhost:3142/debian unstable/main armhf libgmp-dev armhf 2:6.3.0+dfsg-3 [592 kB]
Get:147 http://localhost:3142/debian unstable/main armhf nettle-dev armhf 3.10.1-1 [1314 kB]
Get:148 http://localhost:3142/debian unstable/main armhf libgnutls28-dev armhf 3.8.9-2 [1337 kB]
Get:149 http://localhost:3142/debian unstable/main armhf libkrb5-dev armhf 1.21.3-5 [16.1 kB]
Get:150 http://localhost:3142/debian unstable/main armhf libldap-dev armhf 2.6.9+dfsg-2 [286 kB]
Get:151 http://localhost:3142/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB]
Get:152 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB]
Get:153 http://localhost:3142/debian unstable/main armhf pkgconf armhf 1.8.1-4 [26.1 kB]
Get:154 http://localhost:3142/debian unstable/main armhf libnghttp2-dev armhf 1.64.0-1.1 [103 kB]
Get:155 http://localhost:3142/debian unstable/main armhf libnghttp3-dev armhf 1.8.0-1 [84.8 kB]
Get:156 http://localhost:3142/debian unstable/main armhf libngtcp2-crypto-gnutls-dev armhf 1.11.0-1 [32.2 kB]
Get:157 http://localhost:3142/debian unstable/main armhf libngtcp2-dev armhf 1.11.0-1 [178 kB]
Get:158 http://localhost:3142/debian unstable/main armhf libpsl-dev armhf 0.21.2-1.1+b1 [76.8 kB]
Get:159 http://localhost:3142/debian unstable/main armhf zlib1g-dev armhf 1:1.3.dfsg+really1.3.1-1+b1 [905 kB]
Get:160 http://localhost:3142/debian unstable/main armhf librtmp-dev armhf 2.4+20151223.gitfa8646d.1-2+b5 [63.6 kB]
Get:161 http://localhost:3142/debian unstable/main armhf libssl-dev armhf 3.5.0-1 [2561 kB]
Get:162 http://localhost:3142/debian unstable/main armhf libssh2-1-dev armhf 1.11.1-1 [378 kB]
Get:163 http://localhost:3142/debian unstable/main armhf libzstd-dev armhf 1.5.7+dfsg-1 [333 kB]
Get:164 http://localhost:3142/debian unstable/main armhf libcurl4-gnutls-dev armhf 8.13.0-5 [452 kB]
Get:165 http://localhost:3142/debian unstable/main armhf libcurl4t64 armhf 8.13.0-5 [330 kB]
Get:166 http://localhost:3142/debian unstable/main armhf libdatrie1 armhf 0.2.13-4 [34.6 kB]
Get:167 http://localhost:3142/debian unstable/main armhf libdeflate0 armhf 1.23-2 [36.5 kB]
Get:168 http://localhost:3142/debian unstable/main armhf libdeflate-dev armhf 1.23-2 [44.6 kB]
Get:169 http://localhost:3142/debian unstable/main armhf libfribidi0 armhf 1.0.16-1 [24.6 kB]
Get:170 http://localhost:3142/debian unstable/main armhf libgomp1 armhf 14.2.0-19 [111 kB]
Get:171 http://localhost:3142/debian unstable/main armhf libubsan1 armhf 14.2.0-19 [1040 kB]
Get:172 http://localhost:3142/debian unstable/main armhf libgcc-14-dev armhf 14.2.0-19 [768 kB]
Get:173 http://localhost:3142/debian unstable/main armhf libgfortran5 armhf 14.2.0-19 [263 kB]
Get:174 http://localhost:3142/debian unstable/main armhf libpcre2-8-0 armhf 10.45-1 [259 kB]
Get:175 http://localhost:3142/debian unstable/main armhf libselinux1 armhf 3.8.1-1 [74.8 kB]
Get:176 http://localhost:3142/debian unstable/main armhf libmount1 armhf 2.41-5 [189 kB]
Get:177 http://localhost:3142/debian unstable/main armhf libglib2.0-0t64 armhf 2.84.2-1 [1342 kB]
Get:178 http://localhost:3142/debian unstable/main armhf libgraphite2-3 armhf 1.3.14-2+b1 [63.1 kB]
Get:179 http://localhost:3142/debian unstable/main armhf libharfbuzz0b armhf 10.2.0-1+b1 [419 kB]
Get:180 http://localhost:3142/debian unstable/main armhf libhtscodecs2 armhf 1.6.1-2 [63.2 kB]
Get:181 http://localhost:3142/debian unstable/main armhf liblzma5 armhf 5.8.1-1 [296 kB]
Get:182 http://localhost:3142/debian unstable/main armhf libhts3t64 armhf 1.21+ds-1 [408 kB]
Get:183 http://localhost:3142/debian unstable/main armhf liblzma-dev armhf 5.8.1-1 [336 kB]
Get:184 http://localhost:3142/debian unstable/main armhf libhts-dev armhf 1.21+ds-1 [1657 kB]
Get:185 http://localhost:3142/debian unstable/main amd64 x11-common all 1:7.7+24 [217 kB]
Get:186 http://localhost:3142/debian unstable/main armhf libice6 armhf 2:1.1.1-1 [58.5 kB]
Get:187 http://localhost:3142/debian unstable/main armhf libicu76 armhf 76.1-3 [9368 kB]
Get:188 http://localhost:3142/debian unstable/main armhf libjbig0 armhf 2.1-6.1+b2 [27.3 kB]
Get:189 http://localhost:3142/debian unstable/main armhf libjpeg62-turbo armhf 1:2.1.5-4 [146 kB]
Get:190 http://localhost:3142/debian unstable/main armhf liblapack3 armhf 3.12.1-2 [1835 kB]
Get:191 http://localhost:3142/debian unstable/main armhf liblerc4 armhf 4.0.0+ds-5 [146 kB]
Get:192 http://localhost:3142/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB]
Get:193 http://localhost:3142/debian unstable/main armhf libthai0 armhf 0.1.29-2+b1 [46.0 kB]
Get:194 http://localhost:3142/debian unstable/main armhf libpango-1.0-0 armhf 1.56.3-1 [202 kB]
Get:195 http://localhost:3142/debian unstable/main armhf libpangoft2-1.0-0 armhf 1.56.3-1 [48.9 kB]
Get:196 http://localhost:3142/debian unstable/main armhf libpangocairo-1.0-0 armhf 1.56.3-1 [31.6 kB]
Get:197 http://localhost:3142/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB]
Get:198 http://localhost:3142/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB]
Get:199 http://localhost:3142/debian unstable/main armhf libpcre2-16-0 armhf 10.45-1 [243 kB]
Get:200 http://localhost:3142/debian unstable/main armhf libpcre2-32-0 armhf 10.45-1 [235 kB]
Get:201 http://localhost:3142/debian unstable/main armhf libpcre2-posix3 armhf 10.45-1 [63.1 kB]
Get:202 http://localhost:3142/debian unstable/main armhf libpcre2-dev armhf 10.45-1 [755 kB]
Get:203 http://localhost:3142/debian unstable/main armhf libtinfo6 armhf 6.5+20250216-2 [333 kB]
Get:204 http://localhost:3142/debian unstable/main armhf libreadline8t64 armhf 8.2-6 [146 kB]
Get:205 http://localhost:3142/debian unstable/main armhf libsharpyuv0 armhf 1.5.0-0.1 [114 kB]
Get:206 http://localhost:3142/debian unstable/main armhf libuuid1 armhf 2.41-5 [36.4 kB]
Get:207 http://localhost:3142/debian unstable/main armhf libsm6 armhf 2:1.2.6-1 [35.7 kB]
Get:208 http://localhost:3142/debian unstable/main armhf libstdc++-14-dev armhf 14.2.0-19 [2380 kB]
Get:209 http://localhost:3142/debian unstable/main armhf libsvm3 armhf 3.24+ds-6.1 [36.6 kB]
Get:210 http://localhost:3142/debian unstable/main armhf libsvm-dev armhf 3.24+ds-6.1 [58.2 kB]
Get:211 http://localhost:3142/debian unstable/main armhf libtcl8.6 armhf 8.6.16+dfsg-1 [934 kB]
Get:212 http://localhost:3142/debian unstable/main armhf libtclap-dev armhf 1.2.5-1+b2 [3359 kB]
Get:213 http://localhost:3142/debian unstable/main armhf libwebp7 armhf 1.5.0-0.1 [273 kB]
Get:214 http://localhost:3142/debian unstable/main armhf libtiff6 armhf 4.7.0-3 [321 kB]
Get:215 http://localhost:3142/debian unstable/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB]
Get:216 http://localhost:3142/debian unstable/main armhf libtirpc3t64 armhf 1.3.6+ds-1 [71.5 kB]
Get:217 http://localhost:3142/debian unstable/main armhf libxft2 armhf 2.3.6-1+b4 [46.4 kB]
Get:218 http://localhost:3142/debian unstable/main armhf libxss1 armhf 1:1.2.3-1+b3 [16.4 kB]
Get:219 http://localhost:3142/debian unstable/main armhf libtk8.6 armhf 8.6.16-1 [698 kB]
Get:220 http://localhost:3142/debian unstable/main armhf libxt6t64 armhf 1:1.2.1-1.2+b2 [160 kB]
Get:221 http://localhost:3142/debian unstable/main amd64 zip amd64 3.0-15 [235 kB]
Get:222 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB]
Get:223 http://localhost:3142/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB]
Get:224 http://localhost:3142/debian unstable/main armhf r-base-core armhf 4.5.0-3 [28.3 MB]
Get:225 http://localhost:3142/debian unstable/main armhf r-mathlib armhf 4.5.0-3 [2670 kB]
Preconfiguring packages ...
Fetched 166 MB in 2s (67.2 MB/s)
Selecting previously unselected package libncursesw6:amd64.
(Reading database ... 12888 files and directories currently installed.)
Preparing to unpack .../000-libncursesw6_6.5+20250216-2_amd64.deb ...
Unpacking libncursesw6:amd64 (6.5+20250216-2) ...
Selecting previously unselected package libproc2-0:amd64.
Preparing to unpack .../001-libproc2-0_2%3a4.0.4-8_amd64.deb ...
Unpacking libproc2-0:amd64 (2:4.0.4-8) ...
Selecting previously unselected package procps.
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Unpacking procps (2:4.0.4-8) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../003-readline-common_8.2-6_all.deb ...
Unpacking readline-common (8.2-6) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../004-sensible-utils_0.0.25_all.deb ...
Unpacking sensible-utils (0.0.25) ...
Selecting previously unselected package openssl.
Preparing to unpack .../005-openssl_3.5.0-1_amd64.deb ...
Unpacking openssl (3.5.0-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../006-ca-certificates_20250419_all.deb ...
Unpacking ca-certificates (20250419) ...
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Preparing to unpack .../007-libmagic-mgc_1%3a5.46-5_amd64.deb ...
Unpacking libmagic-mgc (1:5.46-5) ...
Selecting previously unselected package libmagic1t64:amd64.
Preparing to unpack .../008-libmagic1t64_1%3a5.46-5_amd64.deb ...
Unpacking libmagic1t64:amd64 (1:5.46-5) ...
Selecting previously unselected package file.
Preparing to unpack .../009-file_1%3a5.46-5_amd64.deb ...
Unpacking file (1:5.46-5) ...
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Preparing to unpack .../010-gettext-base_0.23.1-2_amd64.deb ...
Unpacking gettext-base (0.23.1-2) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../011-libuchardet0_0.0.8-1+b2_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.8-1+b2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../012-groff-base_1.23.0-8_amd64.deb ...
Unpacking groff-base (1.23.0-8) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../013-bsdextrautils_2.41-5_amd64.deb ...
Unpacking bsdextrautils (2.41-5) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../014-libpipeline1_1.5.8-1_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.8-1) ...
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Preparing to unpack .../015-man-db_2.13.1-1_amd64.deb ...
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Adding 'diversion of /lib/arm-linux-gnueabihf/libhistory.so.8.2 to /lib/arm-linux-gnueabihf/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8 to /lib/arm-linux-gnueabihf/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/arm-linux-gnueabihf/libreadline.so.8.2 to /lib/arm-linux-gnueabihf/libreadline.so.8.2.usr-is-merged by libreadline8t64'
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Adding 'diversion of /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0 to /lib/arm-linux-gnueabihf/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64'
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invoke-rc.d: could not determine current runlevel
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update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
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Setting up libproc2-0:amd64 (2:4.0.4-8) ...
Setting up libunistring5:amd64 (1.3-2) ...
Setting up fonts-dejavu-mono (2.37-8) ...
Setting up libpng16-16t64:amd64 (1.6.48-1) ...
Setting up linux-libc-dev-armhf-cross (6.12.29-1cross1) ...
Setting up autopoint (0.23.1-2) ...
Setting up fonts-dejavu-core (2.37-8) ...
Setting up pkgconf-bin (1.8.1-4) ...
Setting up libncursesw6:amd64 (6.5+20250216-2) ...
Setting up autoconf (2.72-3.1) ...
Setting up libtclap-dev:armhf (1.2.5-1+b2) ...
Setting up dwz (0.15-1+b1) ...
Setting up sensible-utils (0.0.25) ...
Setting up libuchardet0:amd64 (0.0.8-1+b2) ...
Setting up procps (2:4.0.4-8) ...
Setting up libthai-data (0.1.29-2) ...
Setting up libpaper2:amd64 (2.2.5-0.3+b2) ...
Setting up openssl (3.5.0-1) ...
Setting up binutils-arm-linux-gnueabihf (2.44-3) ...
Setting up readline-common (8.2-6) ...
Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-1) ...
Setting up xdg-utils (1.2.1-2) ...
update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode
Setting up cpp-14-arm-linux-gnueabihf (14.2.0-19cross1) ...
Setting up automake (1:1.17-4) ...
update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode
Setting up libgomp1-armhf-cross (14.2.0-19cross1) ...
Setting up libfile-stripnondeterminism-perl (1.14.1-2) ...
Setting up gettext (0.23.1-2) ...
Setting up libtool (2.5.4-4) ...
Setting up libgcc-s1-armhf-cross (14.2.0-19cross1) ...
Setting up fontconfig-config (2.15.0-2.3) ...
Setting up libc6-dev-armhf-cross (2.41-8cross1) ...
Setting up libpaper-utils (2.2.5-0.3+b2) ...
Setting up pkgconf:armhf (1.8.1-4) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (20) ...
Setting up ca-certificates (20250419) ...
Updating certificates in /etc/ssl/certs...
150 added, 0 removed; done.
Setting up libstdc++6-armhf-cross (14.2.0-19cross1) ...
Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ...
Setting up libubsan1-armhf-cross (14.2.0-19cross1) ...
Setting up ucf (3.0052) ...
Setting up dh-strip-nondeterminism (1.14.1-2) ...
Setting up groff-base (1.23.0-8) ...
Setting up libfontconfig1:amd64 (2.15.0-2.3) ...
Setting up cpp-arm-linux-gnueabihf (4:14.2.0-1) ...
Setting up libasan8-armhf-cross (14.2.0-19cross1) ...
Setting up fontconfig (2.15.0-2.3) ...
Regenerating fonts cache... done.
Setting up po-debconf (1.0.21+nmu1) ...
Setting up man-db (2.13.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libgcc-14-dev-armhf-cross (14.2.0-19cross1) ...
Setting up libstdc++-14-dev-armhf-cross (14.2.0-19cross1) ...
Setting up gcc-14-arm-linux-gnueabihf (14.2.0-19cross1) ...
Setting up debhelper (13.24.2) ...
Setting up gcc-arm-linux-gnueabihf (4:14.2.0-1) ...
Setting up g++-14-arm-linux-gnueabihf (14.2.0-19cross1) ...
Setting up g++-arm-linux-gnueabihf (4:14.2.0-1) ...
Setting up crossbuild-essential-armhf (12.12) ...
Setting up libgcc-s1:armhf (14.2.0-19) ...
Setting up libc6:armhf (2.41-8) ...
Setting up libnghttp3-9:armhf (1.8.0-1) ...
Setting up libnghttp3-dev:armhf (1.8.0-1) ...
Setting up libdb5.3t64:armhf (5.3.28+dfsg2-9) ...
Setting up libffi8:armhf (3.4.8-2) ...
Setting up libasan8:armhf (14.2.0-19) ...
Setting up libtasn1-6:armhf (4.20.0-2) ...
Setting up r-mathlib:armhf (4.5.0-3) ...
Setting up libngtcp2-16:armhf (1.11.0-1) ...
Setting up libbz2-1.0:armhf (1.0.8-6) ...
Setting up libtasn1-6-dev:armhf (4.20.0-2) ...
Setting up libblkid1:armhf (2.41-5) ...
Setting up libstdc++6:armhf (14.2.0-19) ...
Setting up libsvm3:armhf (3.24+ds-6.1) ...
Setting up libtinfo6:armhf (6.5+20250216-2) ...
Setting up libhtscodecs2:armhf (1.6.1-2) ...
Setting up libexpat1:armhf (2.7.1-1) ...
Setting up libgraphite2-3:armhf (1.3.14-2+b1) ...
Setting up libpixman-1-0:armhf (0.44.0-3) ...
Setting up libsharpyuv0:armhf (1.5.0-0.1) ...
Setting up libzstd1:armhf (1.5.7+dfsg-1) ...
Setting up libice6:armhf (2:1.1.1-1) ...
Setting up libxau6:armhf (1:1.0.11-1) ...
Setting up libxdmcp6:armhf (1:1.1.5-1) ...
Setting up libkeyutils1:armhf (1.6.3-6) ...
Setting up libxcb1:armhf (1.17.0-2+b1) ...
Setting up libzstd-dev:armhf (1.5.7+dfsg-1) ...
Setting up liblerc4:armhf (4.0.0+ds-5) ...
Setting up liblzma5:armhf (5.8.1-1) ...
Setting up libdatrie1:armhf (0.2.13-4) ...
Setting up libxcb-render0:armhf (1.17.0-2+b1) ...
Setting up libbrotli1:armhf (1.1.0-2+b7) ...
Setting up libnghttp2-14:armhf (1.64.0-1.1) ...
Setting up libdeflate0:armhf (1.23-2) ...
Setting up libevent-2.1-7t64:armhf (2.1.12-stable-10+b1) ...
Setting up zlib1g:armhf (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libcrypt1:armhf (1:4.4.38-1) ...
Setting up libxcb-shm0:armhf (1.17.0-2+b1) ...
Setting up libcom-err2:armhf (1.47.2-1+b1) ...
Setting up libngtcp2-dev:armhf (1.11.0-1) ...
Setting up libgomp1:armhf (14.2.0-19) ...
Setting up libjbig0:armhf (2.1-6.1+b2) ...
Setting up libpcre2-16-0:armhf (10.45-1) ...
Setting up libkrb5support0:armhf (1.21.3-5) ...
Setting up libsasl2-modules-db:armhf (2.1.28+dfsg1-9) ...
Setting up libthai0:armhf (0.1.29-2+b1) ...
Setting up libnettle8t64:armhf (3.10.1-1) ...
Setting up libpcre2-32-0:armhf (10.45-1) ...
Setting up libblas3:armhf (3.12.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/blas/libblas.so.3 to provide /usr/lib/arm-linux-gnueabihf/libblas.so.3 (libblas.so.3-arm-linux-gnueabihf) in auto mode
Setting up libjpeg62-turbo:armhf (1:2.1.5-4) ...
Setting up libgmp10:armhf (2:6.3.0+dfsg-3) ...
Setting up libfribidi0:armhf (1.0.16-1) ...
Setting up libp11-kit0:armhf (0.25.5-3) ...
Setting up libunistring5:armhf (1.3-2) ...
Setting up libsvm-dev:armhf (3.24+ds-6.1) ...
Setting up libpng16-16t64:armhf (1.6.48-1) ...
Setting up libatomic1:armhf (14.2.0-19) ...
Setting up libuuid1:armhf (2.41-5) ...
Setting up libtcl8.6:armhf (8.6.16+dfsg-1) ...
Setting up libpcre2-8-0:armhf (10.45-1) ...
Setting up libk5crypto3:armhf (1.21.3-5) ...
Setting up libgfortran5:armhf (14.2.0-19) ...
Setting up libwebp7:armhf (1.5.0-0.1) ...
Setting up libreadline8t64:armhf (8.2-6) ...
Setting up liblzma-dev:armhf (5.8.1-1) ...
Setting up libubsan1:armhf (14.2.0-19) ...
Setting up libpcre2-posix3:armhf (10.45-1) ...
Setting up libhogweed6t64:armhf (3.10.1-1) ...
Setting up libcrypt-dev:armhf (1:4.4.38-1) ...
Setting up libtiff6:armhf (4.7.0-3) ...
Setting up libc6-dev:armhf (2.41-8) ...
Setting up libx11-6:armhf (2:1.8.12-1) ...
Setting up libicu76:armhf (76.1-3) ...
Setting up libgcc-14-dev:armhf (14.2.0-19) ...
Setting up libdeflate-dev:armhf (1.23-2) ...
Setting up libstdc++-14-dev:armhf (14.2.0-19) ...
Setting up libsm6:armhf (2:1.2.6-1) ...
Setting up libbrotli-dev:armhf (1.1.0-2+b7) ...
Setting up libp11-kit-dev:armhf (0.25.5-3) ...
Setting up libbz2-dev:armhf (1.0.8-6) ...
Setting up libnghttp2-dev:armhf (1.64.0-1.1) ...
Setting up liblapack3:armhf (3.12.1-2) ...
update-alternatives: using /usr/lib/arm-linux-gnueabihf/lapack/liblapack.so.3 to provide /usr/lib/arm-linux-gnueabihf/liblapack.so.3 (liblapack.so.3-arm-linux-gnueabihf) in auto mode
Setting up libpcre2-dev:armhf (10.45-1) ...
Setting up libxrender1:armhf (1:0.9.12-1) ...
Setting up libssl3t64:armhf (3.5.0-1) ...
Setting up libxext6:armhf (2:1.3.4-1+b3) ...
Setting up libidn2-0:armhf (2.3.8-2) ...
Setting up libselinux1:armhf (3.8.1-1) ...
Setting up libunbound8:armhf (1.22.0-1+b1) ...
Setting up libgmpxx4ldbl:armhf (2:6.3.0+dfsg-3) ...
Setting up libfreetype6:armhf (2.13.3+dfsg-1) ...
Setting up libxt6t64:armhf (1:1.2.1-1.2+b2) ...
Setting up comerr-dev:armhf (2.1-1.47.2-1+b1) ...
Setting up libssl-dev:armhf (3.5.0-1) ...
Setting up libidn2-dev:armhf (2.3.8-2) ...
Setting up libsasl2-2:armhf (2.1.28+dfsg1-9) ...
Setting up zlib1g-dev:armhf (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libmount1:armhf (2.41-5) ...
Setting up libkrb5-3:armhf (1.21.3-5) ...
Setting up libxss1:armhf (1:1.2.3-1+b3) ...
Setting up libfontconfig1:armhf (2.15.0-2.3) ...
Setting up libssh2-1t64:armhf (1.11.1-1) ...
Setting up libldap2:armhf (2.6.9+dfsg-2) ...
Setting up libgnutls30t64:armhf (3.8.9-2) ...
Setting up libgnutls-openssl27t64:armhf (3.8.9-2) ...
Setting up libxft2:armhf (2.3.6-1+b4) ...
Setting up libgmp-dev:armhf (2:6.3.0+dfsg-3) ...
Setting up nettle-dev:armhf (3.10.1-1) ...
Setting up libtk8.6:armhf (8.6.16-1) ...
Setting up libpsl5t64:armhf (0.21.2-1.1+b1) ...
Setting up libcairo2:armhf (1.18.4-1+b1) ...
Setting up libpsl-dev:armhf (0.21.2-1.1+b1) ...
Setting up libglib2.0-0t64:armhf (2.84.2-1) ...
/var/lib/dpkg/info/libglib2.0-0t64:armhf.postinst: 37: /usr/lib/arm-linux-gnueabihf/glib-2.0/glib-compile-schemas: Exec format error
/var/lib/dpkg/info/libglib2.0-0t64:armhf.postinst: 38: /usr/lib/arm-linux-gnueabihf/glib-2.0/gio-querymodules: Exec format error
Setting up libgnutls-dane0t64:armhf (3.8.9-2) ...
Setting up librtmp1:armhf (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libldap-dev:armhf (2.6.9+dfsg-2) ...
Setting up libgssapi-krb5-2:armhf (1.21.3-5) ...
Setting up libssh2-1-dev:armhf (1.11.1-1) ...
Setting up libharfbuzz0b:armhf (10.2.0-1+b1) ...
Setting up libngtcp2-crypto-gnutls8:armhf (1.11.0-1) ...
Setting up libgnutls28-dev:armhf (3.8.9-2) ...
Setting up libcurl4t64:armhf (8.13.0-5) ...
Setting up libtirpc3t64:armhf (1.3.6+ds-1) ...
Setting up libpango-1.0-0:armhf (1.56.3-1) ...
Setting up libcurl3t64-gnutls:armhf (8.13.0-5) ...
Setting up libngtcp2-crypto-gnutls-dev:armhf (1.11.0-1) ...
Setting up libgssrpc4t64:armhf (1.21.3-5) ...
Setting up librtmp-dev:armhf (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libhts3t64:armhf (1.21+ds-1) ...
Setting up libpangoft2-1.0-0:armhf (1.56.3-1) ...
Setting up libpangocairo-1.0-0:armhf (1.56.3-1) ...
Setting up libkadm5clnt-mit12:armhf (1.21.3-5) ...
Setting up libkdb5-10t64:armhf (1.21.3-5) ...
Setting up r-base-core:armhf (4.5.0-3) ...
Creating config file /etc/R/Renviron with new version
Setting up libkadm5srv-mit12:armhf (1.21.3-5) ...
Setting up krb5-multidev:armhf (1.21.3-5) ...
Setting up libkrb5-dev:armhf (1.21.3-5) ...
Setting up libcurl4-gnutls-dev:armhf (8.13.0-5) ...
Setting up libhts-dev:armhf (1.21+ds-1) ...
Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ...
Processing triggers for libc-bin (2.41-8) ...
Processing triggers for ca-certificates (20250419) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64)
Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.19 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-8 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-armhf-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-armhf-cross_14.2.0-19cross1 linux-libc-dev_6.12.29-1
Package versions: apt_3.0.1 apt-utils_3.0.1 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_13.8 base-passwd_3.6.7 bash_5.2.37-2+b2 binutils_2.44-3 binutils-arm-linux-gnueabihf_2.44-3 binutils-common_2.44-3 binutils-x86-64-linux-gnu_2.44-3 bsdextrautils_2.41-5 bsdutils_1:2.41-5 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20250419 comerr-dev_2.1-1.47.2-1+b1 coreutils_9.7-2 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-arm-linux-gnueabihf_14.2.0-19cross1 cpp-14-x86-64-linux-gnu_14.2.0-19 cpp-arm-linux-gnueabihf_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-armhf_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debian-archive-keyring_2025.1 debianutils_5.22 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-4 dpkg_1.22.19 dpkg-dev_1.22.19 dwz_0.15-1+b1 fakeroot_1.37.1.2-1 file_1:5.46-5 findutils_4.10.0-3 fontconfig_2.15.0-2.3 fontconfig-config_2.15.0-2.3 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-arm-linux-gnueabihf_14.2.0-19cross1 g++-14-x86-64-linux-gnu_14.2.0-19 g++-arm-linux-gnueabihf_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-arm-linux-gnueabihf_14.2.0-19cross1 gcc-14-arm-linux-gnueabihf-base_14.2.0-19cross1 gcc-14-base_14.2.0-19 gcc-14-cross-base_14.2.0-19cross1 gcc-14-x86-64-linux-gnu_14.2.0-19 gcc-arm-linux-gnueabihf_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-2 gettext-base_0.23.1-2 grep_3.11-4 groff-base_1.23.0-8 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.21.3-5 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.0.1 libarchive-zip-perl_1.68-1 libasan8_14.2.0-19 libasan8-armhf-cross_14.2.0-19cross1 libatomic1_14.2.0-19 libatomic1-armhf-cross_14.2.0-19cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblas3_3.12.1-2 libblkid1_2.41-5 libbrotli-dev_1.1.0-2+b7 libbrotli1_1.1.0-2+b7 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.41-8 libc-dev-bin_2.41-8 libc6_2.41-8 libc6-armhf-cross_2.41-8cross1 libc6-dev_2.41-8 libc6-dev-armhf-cross_2.41-8cross1 libcairo2_1.18.4-1+b1 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-7 libcc1-0_14.2.0-19 libcom-err2_1.47.2-1+b1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libcurl3t64-gnutls_8.13.0-5 libcurl4-gnutls-dev_8.13.0-5 libcurl4t64_8.13.0-5 libdatrie1_0.2.13-4 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.278 libdebhelper-perl_13.24.2 libdeflate-dev_1.23-2 libdeflate0_1.23-2 libdpkg-perl_1.22.19 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.7.1-1 libfakeroot_1.37.1.2-1 libffi8_3.4.8-2 libfile-stripnondeterminism-perl_1.14.1-2 libfontconfig1_2.15.0-2.3 libfreetype6_2.13.3+dfsg-1 libfribidi0_1.0.16-1 libgcc-14-dev_14.2.0-19 libgcc-14-dev-armhf-cross_14.2.0-19cross1 libgcc-s1_14.2.0-19 libgcc-s1-armhf-cross_14.2.0-19cross1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgfortran5_14.2.0-19 libglib2.0-0t64_2.84.2-1 libgmp-dev_2:6.3.0+dfsg-3 libgmp10_2:6.3.0+dfsg-3 libgmpxx4ldbl_2:6.3.0+dfsg-3 libgnutls-dane0t64_3.8.9-2 libgnutls-openssl27t64_3.8.9-2 libgnutls28-dev_3.8.9-2 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgomp1-armhf-cross_14.2.0-19cross1 libgprofng0_2.44-3 libgraphite2-3_1.3.14-2+b1 libgssapi-krb5-2_1.21.3-5 libgssrpc4t64_1.21.3-5 libharfbuzz0b_10.2.0-1+b1 libhogweed6t64_3.10.1-1 libhts-dev_1.21+ds-1 libhts3t64_1.21+ds-1 libhtscodecs2_1.6.1-2 libhwasan0_14.2.0-19 libice6_2:1.1.1-1 libicu76_76.1-3 libidn2-0_2.3.8-2 libidn2-dev_2.3.8-2 libisl23_0.27-1 libitm1_14.2.0-19 libjansson4_2.14-2+b3 libjbig0_2.1-6.1+b2 libjpeg62-turbo_1:2.1.5-4 libk5crypto3_1.21.3-5 libkadm5clnt-mit12_1.21.3-5 libkadm5srv-mit12_1.21.3-5 libkdb5-10t64_1.21.3-5 libkeyutils1_1.6.3-6 libkrb5-3_1.21.3-5 libkrb5-dev_1.21.3-5 libkrb5support0_1.21.3-5 liblapack3_3.12.1-2 liblastlog2-2_2.41-5 libldap-dev_2.6.9+dfsg-2 libldap2_2.6.9+dfsg-2 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perl-modules-5.40_5.40.1-3 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 procps_2:4.0.4-8 r-base-core_4.5.0-3 r-mathlib_4.5.0-3 readline-common_8.2-6 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.25 sqv_1.3.0-2 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-3 ucf_3.0052 unzip_6.0-29 util-linux_2.41-5 x11-common_1:7.7+24 xdg-utils_1.2.1-2 xz-utils_5.8.1-1 zip_3.0-15 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

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Hash: SHA512

Format: 3.0 (quilt)
Source: vt
Binary: vt, vt-examples
Architecture: any all
Version: 0.57721+ds-3
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Antoni Villalonga <antoni@friki.cat>
Homepage: https://genome.sph.umich.edu/wiki/Vt
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/vt
Vcs-Git: https://salsa.debian.org/med-team/vt.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, liblzma-dev, libcurl4-gnutls-dev, libssl-dev, libdeflate-dev, libhts-dev, libpcre2-dev, libsvm-dev, libtclap-dev, r-mathlib, r-base-core
Package-List:
 vt deb science optional arch=any
 vt-examples deb science optional arch=all
Checksums-Sha1:
 8d1f794a59a8497084272acc1d6d6d8e5557c961 18574416 vt_0.57721+ds.orig.tar.xz
 883ef66dd524310822a2ca0b1e9355515edb7f69 8092 vt_0.57721+ds-3.debian.tar.xz
Checksums-Sha256:
 ce6e49949e5a61cd8e06ebac2dea1db94e2df78881350aba1cd178a1e4f73865 18574416 vt_0.57721+ds.orig.tar.xz
 52295d9de36ef140fd0959a1220b85b7acd4e5c34e69a3b65abe56f9a2a3a95a 8092 vt_0.57721+ds-3.debian.tar.xz
Files:
 d431231e862dc0adaa30457001f064f0 18574416 vt_0.57721+ds.orig.tar.xz
 2ffd195b13c6e4b77b0d6673787fe57d 8092 vt_0.57721+ds-3.debian.tar.xz

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error: the following required arguments were not provided:
  --keyring <FILE>

Usage: sqv --keyring <FILE> --cleartext --output <FILE> <FILE>

For more information, try '--help'.
dpkg-source: warning: cannot verify inline signature for ./vt_0.57721+ds-3.dsc: no acceptable signature found
dpkg-source: info: extracting vt in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking vt_0.57721+ds.orig.tar.xz
dpkg-source: info: unpacking vt_0.57721+ds-3.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying makefile
dpkg-source: info: applying fix-spelling
dpkg-source: info: applying test-fail-on-error
dpkg-source: info: applying 0001-updated-faidx_fetch_uc_seq.patch
dpkg-source: info: applying 0002-hts-1.11.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=crossqa
OLDPWD=/home/crossqa
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SBUILD_CONFIG=/tmp/tmp.OqO5XYK4Uq/sbuild.conf
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=crossqa
SCHROOT_SESSION_ID=sid-amd64-sbuild-b74e6953-636c-4669-8151-8000a015537a
SCHROOT_UID=1000
SCHROOT_USER=crossqa
SHELL=/bin/sh
USER=crossqa
XDG_SESSION_CLASS=user

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package vt
dpkg-buildpackage: info: source version 0.57721+ds-3
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Antoni Villalonga <antoni@friki.cat>
dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean
   dh_auto_clean
	make -j1 clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf vt ahmm.o align.o allele.o annotate_1000g.o annotate_dbsnp_rsid.o annotate_indels.o annotate_indels2.o annotate_regions.o annotate_variants.o annotate_vntrs.o augmented_bam_record.o bcf_genotyping_buffered_reader.o bcf_single_genotyping_buffered_reader.o bam_ordered_reader.o bcf_ordered_reader.o bcf_ordered_writer.o bcf_synced_reader.o bed.o candidate_motif_picker.o candidate_region_extractor.o cat.o chmm.o complex_genotyping_record.o compute_concordance.o compute_features.o compute_features2.o compute_rl_dist.o config.o consolidate_multiallelics.o consolidate_vntrs.o consolidate.o construct_probes.o decompose.o decompose2.o decompose_blocksub.o discover.o duplicate.o estimate.o estimator.o extract_vntrs.o filter.o filter_overlap.o flank_detector.o fuzzy_aligner.o fuzzy_partition.o gencode.o genome_interval.o genotype.o genotyping_record.o ghmm.o hts_utils.o hfilter.o indel_annotator.o indel_genotyping_record.o index.o info2tab.o interval_tree.o interval.o lfhmm.o lhmm.o lhmm1.o liftover.o log_tool.o merge.o merge_candidate_variants.o merge_genotypes.o milk_filter.o motif_tree.o motif_map.o multi_partition.o multiallelics_consolidator.o needle.o normalize.o nuclear_pedigree.o ordered_bcf_overlap_matcher.o ordered_region_overlap_matcher.o partition.o paste.o paste_and_compute_features_sequential.o paste_genotypes.o pedigree.o peek.o pileup.o pregex.o profile_afs.o profile_chm1.o profile_chrom.o profile_fic_hwe.o profile_hwe.o profile_indels.o profile_len.o profile_mendelian.o profile_na12878.o profile_snps.o profile_vntrs.o program.o read_filter.o reference_sequence.o rfhmm.o rfhmm_x.o rminfo.o seq.o set_ref.o snp_genotyping_record.o sort.o subset.o sv_tree.o svm_train.o svm_predict.o tbx_ordered_reader.o test.o trio.o union_variants.o uniq.o utils.o validate.o variant.o variant_manip.o variant_filter.o view.o vntr.o vntr_annotator.o vntr_consolidator.o vntr_extractor.o vntr_genotyping_record.o vntr_tree.o vntrize.o wdp_ahmm.o main.o
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
   dh_auto_build -a
	make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc
make[1]: Entering directory '/<<PKGBUILDDIR>>'
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o ahmm.o -c ahmm.cpp
ahmm.cpp: In member function ‘void AHMM::collect_statistics(int32_t, int32_t, int32_t)’:
ahmm.cpp:687:35: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  687 |             rflank_start[MODEL] = NAN;
      |                                   ^~~
ahmm.cpp:688:34: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  688 |             rflank_start[READ] = NAN;
      |                                  ^~~
ahmm.cpp:689:33: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+Inff’ to ‘2147483647’ [-Woverflow]
  689 |             rflank_end[MODEL] = INFINITY;
      |                                 ^~~~~~~~
ahmm.cpp:690:32: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+Inff’ to ‘2147483647’ [-Woverflow]
  690 |             rflank_end[READ] = INFINITY;
      |                                ^~~~~~~~
ahmm.cpp: In member function ‘void AHMM::clear_statistics()’:
ahmm.cpp:737:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  737 |     lflank_start[MODEL] = NAN;
      |                           ^~~
ahmm.cpp:738:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  738 |     lflank_start[READ] = NAN;
      |                          ^~~
ahmm.cpp:739:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  739 |     lflank_end[MODEL] = NAN;
      |                         ^~~
ahmm.cpp:740:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  740 |     lflank_end[READ] = NAN;
      |                        ^~~
ahmm.cpp:741:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  741 |     motif_start[MODEL] = NAN;
      |                          ^~~
ahmm.cpp:742:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  742 |     motif_start[READ] = NAN;
      |                         ^~~
ahmm.cpp:743:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  743 |     motif_end[MODEL] = NAN;
      |                        ^~~
ahmm.cpp:744:23: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  744 |     motif_end[READ] = NAN;
      |                       ^~~
ahmm.cpp:745:19: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  745 |     motif_count = NAN;
      |                   ^~~
ahmm.cpp:746:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  746 |     exact_motif_count = NAN;
      |                         ^~~
ahmm.cpp:747:15: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  747 |     motif_m = NAN;
      |               ^~~
ahmm.cpp:748:17: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  748 |     motif_xid = NAN;
      |                 ^~~
ahmm.cpp:750:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  750 |     rflank_start[MODEL] = NAN;
      |                           ^~~
ahmm.cpp:751:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  751 |     rflank_start[READ] = NAN;
      |                          ^~~
ahmm.cpp:752:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  752 |     rflank_end[MODEL] = NAN;
      |                         ^~~
ahmm.cpp:753:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  753 |     rflank_end[READ] = NAN;
      |                        ^~~
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o align.o -c align.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o allele.o -c allele.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_1000g.o -c annotate_1000g.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_dbsnp_rsid.o -c annotate_dbsnp_rsid.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_indels.o -c annotate_indels.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_indels2.o -c annotate_indels2.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_regions.o -c annotate_regions.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_variants.o -c annotate_variants.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_vntrs.o -c annotate_vntrs.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o augmented_bam_record.o -c augmented_bam_record.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bcf_genotyping_buffered_reader.o -c bcf_genotyping_buffered_reader.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bcf_single_genotyping_buffered_reader.o -c bcf_single_genotyping_buffered_reader.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bam_ordered_reader.o -c bam_ordered_reader.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bcf_ordered_reader.o -c bcf_ordered_reader.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bcf_ordered_writer.o -c bcf_ordered_writer.cpp
bcf_ordered_writer.cpp: In member function ‘void BCFOrderedWriter::write(bcf1_t*)’:
bcf_ordered_writer.cpp:162:114: warning: format ‘%d’ expects argument of type ‘int’, but argument 8 has type ‘hts_pos_t’ {aka ‘long long int’} [-Wformat=]
  162 |                         fprintf(stderr, "[%s:%d %s] Might not be sorted for window size %d at current record %s:%d < %d (%d [last record] - %d), please increase window size to at least %d.\n",
      |                                                                                                                 ~^
      |                                                                                                                  |
      |                                                                                                                  int
      |                                                                                                                 %lld
bcf_ordered_writer.cpp:162:123: warning: format ‘%d’ expects argument of type ‘int’, but argument 10 has type ‘hts_pos_t’ {aka ‘long long int’} [-Wformat=]
  162 |                         fprintf(stderr, "[%s:%d %s] Might not be sorted for window size %d at current record %s:%d < %d (%d [last record] - %d), please increase window size to at least %d.\n",
      |                                                                                                                          ~^
      |                                                                                                                           |
      |                                                                                                                           int
      |                                                                                                                          %lld
bcf_ordered_writer.cpp:162:187: warning: format ‘%d’ expects argument of type ‘int’, but argument 12 has type ‘hts_pos_t’ {aka ‘long long int’} [-Wformat=]
  162 |                         fprintf(stderr, "[%s:%d %s] Might not be sorted for window size %d at current record %s:%d < %d (%d [last record] - %d), please increase window size to at least %d.\n",
      |                                                                                                                                                                                          ~^
      |                                                                                                                                                                                           |
      |                                                                                                                                                                                           int
      |                                                                                                                                                                                          %lld
bcf_ordered_writer.cpp: In member function ‘void BCFOrderedWriter::write_hdr()’:
bcf_ordered_writer.cpp:129:18: warning: ignoring return value of ‘int bcf_hdr_write(htsFile*, bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  129 |     bcf_hdr_write(file, hdr);
      |     ~~~~~~~~~~~~~^~~~~~~~~~~
bcf_ordered_writer.cpp: In member function ‘void BCFOrderedWriter::write(bcf1_t*)’:
bcf_ordered_writer.cpp:195:18: warning: ignoring return value of ‘int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  195 |         bcf_write(file, hdr, v);
      |         ~~~~~~~~~^~~~~~~~~~~~~~
bcf_ordered_writer.cpp: In member function ‘void BCFOrderedWriter::flush(bool)’:
bcf_ordered_writer.cpp:245:22: warning: ignoring return value of ‘int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  245 |             bcf_write(file, hdr, buffer.back());
      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
bcf_ordered_writer.cpp:261:30: warning: ignoring return value of ‘int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  261 |                     bcf_write(file, hdr, buffer.back());
      |                     ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bcf_synced_reader.o -c bcf_synced_reader.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bed.o -c bed.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o candidate_motif_picker.o -c candidate_motif_picker.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o candidate_region_extractor.o -c candidate_region_extractor.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o cat.o -c cat.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o chmm.o -c chmm.cpp
chmm.cpp: In member function ‘void CHMM::clear_statistics()’:
chmm.cpp:1106:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
 1106 |     lflank_start[MODEL] = NAN;
      |                           ^~~
chmm.cpp:1107:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
 1107 |     lflank_start[READ] = NAN;
      |                          ^~~
chmm.cpp:1108:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
 1108 |     lflank_end[MODEL] = NAN;
      |                         ^~~
chmm.cpp:1109:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
 1109 |     lflank_end[READ] = NAN;
      |                        ^~~
chmm.cpp:1110:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
 1110 |     motif_start[MODEL] = NAN;
      |                          ^~~
chmm.cpp:1111:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
 1111 |     motif_start[READ] = NAN;
      |                         ^~~
chmm.cpp:1112:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
 1112 |     motif_end[MODEL] = NAN;
      |                        ^~~
chmm.cpp:1113:23: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
 1113 |     motif_end[READ] = NAN;
      |                       ^~~
chmm.cpp:1114:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
 1114 |     rflank_start[MODEL] = NAN;
      |                           ^~~
chmm.cpp:1115:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
 1115 |     rflank_start[READ] = NAN;
      |                          ^~~
chmm.cpp:1116:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
 1116 |     rflank_end[MODEL] = NAN;
      |                         ^~~
chmm.cpp:1117:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
 1117 |     rflank_end[READ] = NAN;
      |                        ^~~
chmm.cpp:1118:19: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
 1118 |     motif_count = NAN;
      |                   ^~~
chmm.cpp:1119:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
 1119 |     exact_motif_count = NAN;
      |                         ^~~
chmm.cpp:1120:15: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
 1120 |     motif_m = NAN;
      |               ^~~
chmm.cpp:1121:17: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
 1121 |     motif_xid = NAN;
      |                 ^~~
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o complex_genotyping_record.o -c complex_genotyping_record.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o compute_concordance.o -c compute_concordance.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o compute_features.o -c compute_features.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o compute_features2.o -c compute_features2.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o compute_rl_dist.o -c compute_rl_dist.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o config.o -c config.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o consolidate_multiallelics.o -c consolidate_multiallelics.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o consolidate_vntrs.o -c consolidate_vntrs.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o consolidate.o -c consolidate.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o construct_probes.o -c construct_probes.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o decompose.o -c decompose.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o decompose2.o -c decompose2.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o decompose_blocksub.o -c decompose_blocksub.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o discover.o -c discover.cpp
In file included from bcf_ordered_reader.h:27,
                 from program.h:32,
                 from discover.h:27,
                 from discover.cpp:24:
discover.cpp: In member function ‘bool {anonymous}::Igor::filter_read(bam1_t*)’:
hts_utils.h:124:40: warning: narrowing conversion of ‘(s->bam1_t::core.bam1_core_t::pos + 1)’ from ‘hts_pos_t’ {aka ‘long long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing]
  124 | #define bam_get_pos1(s) ((s)->core.pos + 1)
      |                         ~~~~~~~~~~~~~~~^~~~
discover.cpp:355:45: note: in expansion of macro ‘bam_get_pos1’
  355 |                         kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1};
      |                                             ^~~~~~~~~~~~
discover.cpp:355:95: warning: narrowing conversion of ‘(((s->bam1_t::core.bam1_core_t::pos + 1) + ((hts_pos_t)s->bam1_t::core.bam1_core_t::l_qseq)) - 1)’ from ‘hts_pos_t’ {aka ‘long long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing]
  355 |                         kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1};
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o duplicate.o -c duplicate.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o estimate.o -c estimate.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o estimator.o -c estimator.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o extract_vntrs.o -c extract_vntrs.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o filter.o -c filter.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o filter_overlap.o -c filter_overlap.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o flank_detector.o -c flank_detector.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o fuzzy_aligner.o -c fuzzy_aligner.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o fuzzy_partition.o -c fuzzy_partition.cpp
fuzzy_partition.cpp: In member function ‘void {anonymous}::Igor::initialize()’:
fuzzy_partition.cpp:153:21: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  153 |         bcf_hdr_sync(odr->hdr);
      |         ~~~~~~~~~~~~^~~~~~~~~~
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o gencode.o -c gencode.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o genome_interval.o -c genome_interval.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o genotype.o -c genotype.cpp
In file included from bam_ordered_reader.h:27,
                 from genotype.h:27,
                 from genotype.cpp:24:
genotype.cpp: In member function ‘bool {anonymous}::Igor::filter_read(bam1_t*)’:
hts_utils.h:124:40: warning: narrowing conversion of ‘(s->bam1_t::core.bam1_core_t::pos + 1)’ from ‘hts_pos_t’ {aka ‘long long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing]
  124 | #define bam_get_pos1(s) ((s)->core.pos + 1)
      |                         ~~~~~~~~~~~~~~~^~~~
genotype.cpp:304:45: note: in expansion of macro ‘bam_get_pos1’
  304 |                         kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1};
      |                                             ^~~~~~~~~~~~
genotype.cpp:304:95: warning: narrowing conversion of ‘(((s->bam1_t::core.bam1_core_t::pos + 1) + ((hts_pos_t)s->bam1_t::core.bam1_core_t::l_qseq)) - 1)’ from ‘hts_pos_t’ {aka ‘long long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing]
  304 |                         kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1};
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o genotyping_record.o -c genotyping_record.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o ghmm.o -c ghmm.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o hts_utils.o -c hts_utils.cpp
hts_utils.cpp: In function ‘void bcf_hdr_print(bcf_hdr_t*)’:
hts_utils.cpp:406:33: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  406 |     if ( h->dirty ) bcf_hdr_sync(h);
      |                     ~~~~~~~~~~~~^~~
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o hfilter.o -c hfilter.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o indel_annotator.o -c indel_annotator.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o indel_genotyping_record.o -c indel_genotyping_record.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o index.o -c index.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o info2tab.o -c info2tab.cpp
info2tab.cpp: In member function ‘void {anonymous}::Igor::info2tab()’:
info2tab.cpp:278:32: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘hts_pos_t’ {aka ‘long long int’} [-Wformat=]
  278 |             fprintf(out, "%s\t%d", bcf_get_chrom(h, v), bcf_get_pos1(v));
      |                               ~^
      |                                |
      |                                int
      |                               %lld
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o interval_tree.o -c interval_tree.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o interval.o -c interval.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o lfhmm.o -c lfhmm.cpp
lfhmm.cpp: In member function ‘void LFHMM::collect_statistics(int32_t, int32_t, int32_t)’:
lfhmm.cpp:761:33: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  761 |             rflank_end[MODEL] = NAN;
      |                                 ^~~
lfhmm.cpp: In member function ‘void LFHMM::clear_statistics()’:
lfhmm.cpp:868:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  868 |     lflank_start[MODEL] = NAN;
      |                           ^~~
lfhmm.cpp:869:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  869 |     lflank_start[READ] = NAN;
      |                          ^~~
lfhmm.cpp:870:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  870 |     lflank_end[MODEL] = NAN;
      |                         ^~~
lfhmm.cpp:871:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  871 |     lflank_end[READ] = NAN;
      |                        ^~~
lfhmm.cpp:872:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  872 |     motif_start[MODEL] = NAN;
      |                          ^~~
lfhmm.cpp:873:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  873 |     motif_start[READ] = NAN;
      |                         ^~~
lfhmm.cpp:874:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  874 |     motif_end[MODEL] = NAN;
      |                        ^~~
lfhmm.cpp:875:23: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  875 |     motif_end[READ] = NAN;
      |                       ^~~
lfhmm.cpp:876:19: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  876 |     motif_count = NAN;
      |                   ^~~
lfhmm.cpp:877:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  877 |     exact_motif_count = NAN;
      |                         ^~~
lfhmm.cpp:878:15: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  878 |     motif_m = NAN;
      |               ^~~
lfhmm.cpp:879:17: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  879 |     motif_xid = NAN;
      |                 ^~~
lfhmm.cpp:881:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  881 |     rflank_start[MODEL] = NAN;
      |                           ^~~
lfhmm.cpp:882:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  882 |     rflank_start[READ] = NAN;
      |                          ^~~
lfhmm.cpp:883:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  883 |     rflank_end[MODEL] = NAN;
      |                         ^~~
lfhmm.cpp:884:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  884 |     rflank_end[READ] = NAN;
      |                        ^~~
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o lhmm.o -c lhmm.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o lhmm1.o -c lhmm1.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o liftover.o -c liftover.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o log_tool.o -c log_tool.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o merge.o -c merge.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o merge_candidate_variants.o -c merge_candidate_variants.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o merge_genotypes.o -c merge_genotypes.cpp
merge_genotypes.cpp: In member function ‘void {anonymous}::Igor::initialize()’:
merge_genotypes.cpp:215:21: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  215 |         bcf_hdr_sync(odw->hdr);
      |         ~~~~~~~~~~~~^~~~~~~~~~
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o milk_filter.o -c milk_filter.cpp
milk_filter.cpp: In member function ‘void {anonymous}::Igor::milk_filter()’:
milk_filter.cpp:456:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘hts_pos_t’ {aka ‘long long int’} [-Wformat=]
  456 |       fprintf(stderr,"Processing %d variants at %s:%d\n", nread + 1, bcf_seqname(odw->hdr,nv), nv->pos);
      |                                                    ~^                                          ~~~~~~~
      |                                                     |                                              |
      |                                                     int                                            hts_pos_t {aka long long int}
      |                                                    %lld
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o motif_tree.o -c motif_tree.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o motif_map.o -c motif_map.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o multi_partition.o -c multi_partition.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o multiallelics_consolidator.o -c multiallelics_consolidator.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o needle.o -c needle.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o normalize.o -c normalize.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o nuclear_pedigree.o -c nuclear_pedigree.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o ordered_bcf_overlap_matcher.o -c ordered_bcf_overlap_matcher.cpp
ordered_bcf_overlap_matcher.cpp: In constructor ‘OrderedBCFOverlapMatcher::OrderedBCFOverlapMatcher(std::string&, std::vector<GenomeInterval>&)’:
ordered_bcf_overlap_matcher.cpp:34:17: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   34 |     bcf_hdr_sync(odr->hdr);
      |     ~~~~~~~~~~~~^~~~~~~~~~
ordered_bcf_overlap_matcher.cpp: In constructor ‘OrderedBCFOverlapMatcher::OrderedBCFOverlapMatcher(std::string&, std::vector<GenomeInterval>&, std::string)’:
ordered_bcf_overlap_matcher.cpp:52:17: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
   52 |     bcf_hdr_sync(odr->hdr);
      |     ~~~~~~~~~~~~^~~~~~~~~~
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o ordered_region_overlap_matcher.o -c ordered_region_overlap_matcher.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o partition.o -c partition.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o paste.o -c paste.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o paste_and_compute_features_sequential.o -c paste_and_compute_features_sequential.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o paste_genotypes.o -c paste_genotypes.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o pedigree.o -c pedigree.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o peek.o -c peek.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o pileup.o -c pileup.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o pregex.o -c pregex.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_afs.o -c profile_afs.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_chm1.o -c profile_chm1.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_chrom.o -c profile_chrom.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_fic_hwe.o -c profile_fic_hwe.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_hwe.o -c profile_hwe.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_indels.o -c profile_indels.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_len.o -c profile_len.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_mendelian.o -c profile_mendelian.cpp
profile_mendelian.cpp: In member function ‘void {anonymous}::Igor::initialize()’:
profile_mendelian.cpp:191:25: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result]
  191 |             bcf_hdr_sync(odw->hdr);
      |             ~~~~~~~~~~~~^~~~~~~~~~
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_na12878.o -c profile_na12878.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_snps.o -c profile_snps.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_vntrs.o -c profile_vntrs.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o program.o -c program.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o read_filter.o -c read_filter.cpp
In file included from read_filter.h:30,
                 from read_filter.cpp:24:
read_filter.cpp: In member function ‘bool ReadFilter::filter_read(bam_hdr_t*, bam1_t*)’:
hts_utils.h:124:40: warning: narrowing conversion of ‘(s->bam1_t::core.bam1_core_t::pos + 1)’ from ‘hts_pos_t’ {aka ‘long long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing]
  124 | #define bam_get_pos1(s) ((s)->core.pos + 1)
      |                         ~~~~~~~~~~~~~~~^~~~
read_filter.cpp:95:41: note: in expansion of macro ‘bam_get_pos1’
   95 |                     kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1};
      |                                         ^~~~~~~~~~~~
read_filter.cpp:95:91: warning: narrowing conversion of ‘(((s->bam1_t::core.bam1_core_t::pos + 1) + ((hts_pos_t)s->bam1_t::core.bam1_core_t::l_qseq)) - 1)’ from ‘hts_pos_t’ {aka ‘long long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing]
   95 |                     kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1};
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o reference_sequence.o -c reference_sequence.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o rfhmm.o -c rfhmm.cpp
rfhmm.cpp: In member function ‘void RFHMM::clear_statistics()’:
rfhmm.cpp:833:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  833 |     lflank_start[MODEL] = NAN;
      |                           ^~~
rfhmm.cpp:834:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  834 |     lflank_start[READ] = NAN;
      |                          ^~~
rfhmm.cpp:835:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  835 |     lflank_end[MODEL] = NAN;
      |                         ^~~
rfhmm.cpp:836:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  836 |     lflank_end[READ] = NAN;
      |                        ^~~
rfhmm.cpp:837:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  837 |     motif_start[MODEL] = NAN;
      |                          ^~~
rfhmm.cpp:838:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  838 |     motif_start[READ] = NAN;
      |                         ^~~
rfhmm.cpp:839:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  839 |     motif_end[MODEL] = NAN;
      |                        ^~~
rfhmm.cpp:840:23: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  840 |     motif_end[READ] = NAN;
      |                       ^~~
rfhmm.cpp:841:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  841 |     rflank_start[MODEL] = NAN;
      |                           ^~~
rfhmm.cpp:842:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  842 |     rflank_start[READ] = NAN;
      |                          ^~~
rfhmm.cpp:843:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  843 |     rflank_end[MODEL] = NAN;
      |                         ^~~
rfhmm.cpp:844:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  844 |     rflank_end[READ] = NAN;
      |                        ^~~
rfhmm.cpp:845:19: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  845 |     motif_count = NAN;
      |                   ^~~
rfhmm.cpp:846:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  846 |     exact_motif_count = NAN;
      |                         ^~~
rfhmm.cpp:847:15: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  847 |     motif_m = NAN;
      |               ^~~
rfhmm.cpp:848:17: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  848 |     motif_xid = NAN;
      |                 ^~~
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o rfhmm_x.o -c rfhmm_x.cpp
rfhmm_x.cpp: In member function ‘void RFHMM_X::clear_statistics()’:
rfhmm_x.cpp:928:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  928 |     lflank_start[MODEL] = NAN;
      |                           ^~~
rfhmm_x.cpp:929:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  929 |     lflank_start[READ] = NAN;
      |                          ^~~
rfhmm_x.cpp:930:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  930 |     lflank_end[MODEL] = NAN;
      |                         ^~~
rfhmm_x.cpp:931:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  931 |     lflank_end[READ] = NAN;
      |                        ^~~
rfhmm_x.cpp:932:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  932 |     motif_start[MODEL] = NAN;
      |                          ^~~
rfhmm_x.cpp:933:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  933 |     motif_start[READ] = NAN;
      |                         ^~~
rfhmm_x.cpp:934:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  934 |     motif_end[MODEL] = NAN;
      |                        ^~~
rfhmm_x.cpp:935:23: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  935 |     motif_end[READ] = NAN;
      |                       ^~~
rfhmm_x.cpp:936:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  936 |     rflank_start[MODEL] = NAN;
      |                           ^~~
rfhmm_x.cpp:937:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  937 |     rflank_start[READ] = NAN;
      |                          ^~~
rfhmm_x.cpp:938:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  938 |     rflank_end[MODEL] = NAN;
      |                         ^~~
rfhmm_x.cpp:939:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  939 |     rflank_end[READ] = NAN;
      |                        ^~~
rfhmm_x.cpp:940:19: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  940 |     motif_count = NAN;
      |                   ^~~
rfhmm_x.cpp:941:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  941 |     exact_motif_count = NAN;
      |                         ^~~
rfhmm_x.cpp:942:15: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  942 |     motif_m = NAN;
      |               ^~~
rfhmm_x.cpp:943:17: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow]
  943 |     motif_xid = NAN;
      |                 ^~~
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o rminfo.o -c rminfo.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o seq.o -c seq.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o set_ref.o -c set_ref.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o snp_genotyping_record.o -c snp_genotyping_record.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o sort.o -c sort.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o subset.o -c subset.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o sv_tree.o -c sv_tree.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o svm_train.o -c svm_train.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o svm_predict.o -c svm_predict.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o tbx_ordered_reader.o -c tbx_ordered_reader.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o test.o -c test.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o trio.o -c trio.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o union_variants.o -c union_variants.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o uniq.o -c uniq.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o utils.o -c utils.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o validate.o -c validate.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o variant.o -c variant.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o variant_manip.o -c variant_manip.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o variant_filter.o -c variant_filter.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o view.o -c view.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr.o -c vntr.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr_annotator.o -c vntr_annotator.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr_consolidator.o -c vntr_consolidator.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr_extractor.o -c vntr_extractor.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr_genotyping_record.o -c vntr_genotyping_record.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr_tree.o -c vntr_tree.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntrize.o -c vntrize.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o wdp_ahmm.o -c wdp_ahmm.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o main.o -c main.cpp
arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vt ahmm.o align.o allele.o annotate_1000g.o annotate_dbsnp_rsid.o annotate_indels.o annotate_indels2.o annotate_regions.o annotate_variants.o annotate_vntrs.o augmented_bam_record.o bcf_genotyping_buffered_reader.o bcf_single_genotyping_buffered_reader.o bam_ordered_reader.o bcf_ordered_reader.o bcf_ordered_writer.o bcf_synced_reader.o bed.o candidate_motif_picker.o candidate_region_extractor.o cat.o chmm.o complex_genotyping_record.o compute_concordance.o compute_features.o compute_features2.o compute_rl_dist.o config.o consolidate_multiallelics.o consolidate_vntrs.o consolidate.o construct_probes.o decompose.o decompose2.o decompose_blocksub.o discover.o duplicate.o estimate.o estimator.o extract_vntrs.o filter.o filter_overlap.o flank_detector.o fuzzy_aligner.o fuzzy_partition.o gencode.o genome_interval.o genotype.o genotyping_record.o ghmm.o hts_utils.o hfilter.o indel_annotator.o indel_genotyping_record.o index.o info2tab.o interval_tree.o interval.o lfhmm.o lhmm.o lhmm1.o liftover.o log_tool.o merge.o merge_candidate_variants.o merge_genotypes.o milk_filter.o motif_tree.o motif_map.o multi_partition.o multiallelics_consolidator.o needle.o normalize.o nuclear_pedigree.o ordered_bcf_overlap_matcher.o ordered_region_overlap_matcher.o partition.o paste.o paste_and_compute_features_sequential.o paste_genotypes.o pedigree.o peek.o pileup.o pregex.o profile_afs.o profile_chm1.o profile_chrom.o profile_fic_hwe.o profile_hwe.o profile_indels.o profile_len.o profile_mendelian.o profile_na12878.o profile_snps.o profile_vntrs.o program.o read_filter.o reference_sequence.o rfhmm.o rfhmm_x.o rminfo.o seq.o set_ref.o snp_genotyping_record.o sort.o subset.o sv_tree.o svm_train.o svm_predict.o tbx_ordered_reader.o test.o trio.o union_variants.o uniq.o utils.o validate.o variant.o variant_manip.o variant_filter.o view.o vntr.o vntr_annotator.o vntr_consolidator.o vntr_extractor.o vntr_genotyping_record.o vntr_tree.o vntrize.o wdp_ahmm.o main.o     -lz -lpthread -lbz2 -llzma -lcurl -lcrypto -lhts -lpcre2-8 -lsvm -lRmath -lR
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck"
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   dh_auto_install -a
   dh_install -a
   dh_installdocs -a
   dh_installchangelogs -a
   dh_installman -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 from: /lib/ld-linux-armhf.so.3
dpkg-shlibdeps: warning: diversions involved - output may be incorrect
 diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged
dpkg-shlibdeps: warning: debian/vt/usr/bin/vt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'vt' in '../vt_0.57721+ds-3_armhf.deb'.
dpkg-deb: building package 'vt-dbgsym' in '../vt-dbgsym_0.57721+ds-3_armhf.deb'.
 dpkg-genbuildinfo --build=any -O../vt_0.57721+ds-3_armhf.buildinfo
 dpkg-genchanges --build=any -O../vt_0.57721+ds-3_armhf.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2025-05-25T11:11:38Z

+------------------------------------------------------------------------------+
| Finished Timed Build Commands                                                |
+------------------------------------------------------------------------------+


rm -Rf /<<PKGBUILDDIR>>/
--------------------------------------


I: Finished running 'rm -Rf /<<PKGBUILDDIR>>/'.

Finished processing commands.
--------------------------------------------------------------------------------

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


vt_0.57721+ds-3_armhf.changes:
------------------------------

Format: 1.8
Date: Mon, 09 Nov 2020 09:29:40 +0100
Source: vt
Binary: vt vt-dbgsym
Built-For-Profiles: cross nocheck
Architecture: armhf
Version: 0.57721+ds-3
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Antoni Villalonga <antoni@friki.cat>
Description:
 vt         - toolset for short variant discovery in genetic sequence data
Changes:
 vt (0.57721+ds-3) unstable; urgency=medium
 .
   * patch 0001: Get rid of commented code
   * Add patch 0002-hts-1.11.patch
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Files:
 3b1485e2cd20e259661cd3f68fe739df 27535112 debug optional vt-dbgsym_0.57721+ds-3_armhf.deb
 43adac98c5903f3b5b31771dd355b4a6 8916 science optional vt_0.57721+ds-3_armhf.buildinfo
 e44f0d638617adca182f6e9090835fff 702272 science optional vt_0.57721+ds-3_armhf.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: vt
Binary: vt vt-dbgsym
Architecture: armhf
Version: 0.57721+ds-3
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Sun, 25 May 2025 11:11:38 +0000
Build-Path: /<<PKGBUILDDIR>>
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 tzdata (= 2025b-3),
 ucf (= 3.0052),
 unzip (= 6.0-29),
 util-linux (= 2.41-5),
 x11-common (= 1:7.7+24),
 xdg-utils (= 1.2.1-2),
 xz-utils (= 5.8.1-1),
 zip (= 3.0-15),
 zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1),
 zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 LC_CTYPE="C.UTF-8"
 SOURCE_DATE_EPOCH="1604910580"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


vt-dbgsym_0.57721+ds-3_armhf.deb
--------------------------------

 new Debian package, version 2.0.
 size 27535112 bytes: control archive=536 bytes.
     362 bytes,    12 lines      control
     106 bytes,     1 lines      md5sums
 Package: vt-dbgsym
 Source: vt
 Version: 0.57721+ds-3
 Auto-Built-Package: debug-symbols
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 29168
 Depends: vt (= 0.57721+ds-3)
 Section: debug
 Priority: optional
 Description: debug symbols for vt
 Build-Ids: e70e6f6d8c54968c4eecb38f1eb16513538facec

drwxr-xr-x root/root         0 2020-11-09 08:29 ./
drwxr-xr-x root/root         0 2020-11-09 08:29 ./usr/
drwxr-xr-x root/root         0 2020-11-09 08:29 ./usr/lib/
drwxr-xr-x root/root         0 2020-11-09 08:29 ./usr/lib/debug/
drwxr-xr-x root/root         0 2020-11-09 08:29 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2020-11-09 08:29 ./usr/lib/debug/.build-id/e7/
-rw-r--r-- root/root  29857132 2020-11-09 08:29 ./usr/lib/debug/.build-id/e7/0e6f6d8c54968c4eecb38f1eb16513538facec.debug
drwxr-xr-x root/root         0 2020-11-09 08:29 ./usr/share/
drwxr-xr-x root/root         0 2020-11-09 08:29 ./usr/share/doc/
lrwxrwxrwx root/root         0 2020-11-09 08:29 ./usr/share/doc/vt-dbgsym -> vt


vt_0.57721+ds-3_armhf.deb
-------------------------

 new Debian package, version 2.0.
 size 702272 bytes: control archive=920 bytes.
     826 bytes,    17 lines      control
     301 bytes,     5 lines      md5sums
 Package: vt
 Version: 0.57721+ds-3
 Architecture: armhf
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 1808
 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.5), libhts3t64 (>= 1.17), libpcre2-8-0 (>= 10.22), libstdc++6 (>= 13.1), r-base-core
 Section: science
 Priority: optional
 Homepage: https://genome.sph.umich.edu/wiki/Vt
 Description: toolset for short variant discovery in genetic sequence data
  vt is a variant tool set that discovers short variants from Next Generation
  Sequencing data.
  .
  Vt-normalize is a tool to normalize representation of genetic variants in
  the VCF.  Variant normalization is formally defined as the consistent
  representation of genetic variants in an unambiguous and concise way.  In
  vt a simple general algorithm to enforce this is implemented.

drwxr-xr-x root/root         0 2020-11-09 08:29 ./
drwxr-xr-x root/root         0 2020-11-09 08:29 ./usr/
drwxr-xr-x root/root         0 2020-11-09 08:29 ./usr/bin/
-rwxr-xr-x root/root   1836612 2020-11-09 08:29 ./usr/bin/vt
drwxr-xr-x root/root         0 2020-11-09 08:29 ./usr/share/
drwxr-xr-x root/root         0 2020-11-09 08:29 ./usr/share/doc/
drwxr-xr-x root/root         0 2020-11-09 08:29 ./usr/share/doc/vt/
-rw-r--r-- root/root       306 2020-11-09 08:29 ./usr/share/doc/vt/README.test
-rw-r--r-- root/root       426 2020-11-09 08:29 ./usr/share/doc/vt/changelog.Debian.gz
-rw-r--r-- root/root      1766 2020-11-09 08:29 ./usr/share/doc/vt/copyright
drwxr-xr-x root/root         0 2020-11-09 08:29 ./usr/share/man/
drwxr-xr-x root/root         0 2020-11-09 08:29 ./usr/share/man/man1/
-rw-r--r-- root/root       659 2020-11-09 08:29 ./usr/share/man/man1/vt.1.gz


lintian
-------


Setup apt archive
-----------------

Merged Build-Depends: lintian:amd64
Filtered Build-Depends: lintian:amd64
dpkg-deb: warning: root directory /<<RESOLVERDIR>>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119
dpkg-deb: hint: you might need to pass --root-owner-group, see <https://wiki.debian.org/Teams/Dpkg/RootlessBuilds> for further details
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [615 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [1458 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1537 B]
Fetched 3610 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
  appstream diffstat gpg gpgconf iso-codes libaliased-perl libappstream5
  libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl
  libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl
  libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl
  libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl
  libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl
  libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl
  libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl
  libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
  libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl
  libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libglib2.0-0t64
  libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl
  libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl
  libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl
  libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0
  libimport-into-perl libio-html-perl libio-interactive-perl
  libio-socket-ssl-perl libio-string-perl libipc-run3-perl
  libipc-system-simple-perl libiterator-perl libiterator-util-perl
  libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
  libksba8 libldap2 liblist-compare-perl liblist-someutils-perl
  liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl
  liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl
  libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl
  libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl
  libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl
  libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16
  libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0
  libpackage-stash-perl libparams-classify-perl libparams-util-perl
  libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl
  libproc-processtable-perl libpsl5t64 libreadline8t64
  libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2
  libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl
  libsort-versions-perl libssh2-1t64 libstemmer0d libstrictures-perl
  libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
  libsub-install-perl libsub-name-perl libsub-quote-perl
  libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-glob-perl
  libtext-levenshteinxs-perl libtext-markdown-discount-perl
  libtext-xslate-perl libtime-duration-perl libtime-moment-perl
  libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl
  libvariable-magic-perl libwww-mechanize-perl libwww-perl
  libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl
  libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase patchutils
  perl-openssl-defaults plzip shared-mime-info t1utils
Suggested packages:
  apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor
  gnutls-bin krb5-doc krb5-user libdata-dump-perl libcrypt-ssleay-perl
  libscalar-number-perl libbareword-filehandles-perl libindirect-perl
  libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl
  libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch
  libtext-template-perl
Recommended packages:
  gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n
  libhtml-format-perl libio-compress-brotli-perl krb5-locales libldap-common
  liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl
  libsocket6-perl libpackage-stash-xs-perl publicsuffix libsasl2-modules
  libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl
  libxml-sax-expat-perl
The following NEW packages will be installed:
  appstream diffstat gpg gpgconf iso-codes libaliased-perl libappstream5
  libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl
  libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl
  libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl
  libcom-err2 libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl
  libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl
  libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl
  libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl
  libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
  libffi8 libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl
  libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libglib2.0-0t64
  libgnutls30t64 libgpg-error0 libgssapi-krb5-2 libhtml-form-perl
  libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl
  libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl
  libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libidn2-0
  libimport-into-perl libio-html-perl libio-interactive-perl
  libio-socket-ssl-perl libio-string-perl libipc-run3-perl
  libipc-system-simple-perl libiterator-perl libiterator-util-perl
  libjson-maybexs-perl libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
  libksba8 libldap2 liblist-compare-perl liblist-someutils-perl
  liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl
  liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl
  libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl
  libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl
  libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl
  libnetaddr-ip-perl libnghttp2-14 libnghttp3-9 libngtcp2-16
  libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl libp11-kit0
  libpackage-stash-perl libparams-classify-perl libparams-util-perl
  libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl
  libproc-processtable-perl libpsl5t64 libreadline8t64
  libregexp-wildcards-perl librole-tiny-perl librtmp1 libsasl2-2
  libsasl2-modules-db libsereal-decoder-perl libsereal-encoder-perl
  libsort-versions-perl libssh2-1t64 libstemmer0d libstrictures-perl
  libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl
  libsub-install-perl libsub-name-perl libsub-quote-perl
  libsyntax-keyword-try-perl libtasn1-6 libterm-readkey-perl libtext-glob-perl
  libtext-levenshteinxs-perl libtext-markdown-discount-perl
  libtext-xslate-perl libtime-duration-perl libtime-moment-perl
  libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl
  libvariable-magic-perl libwww-mechanize-perl libwww-perl
  libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl
  libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase patchutils
  perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:armhf
  shared-mime-info t1utils
0 upgraded, 163 newly installed, 0 to remove and 0 not upgraded.
Need to get 19.3 MB of archives.
After this operation, 80.4 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [856 B]
Get:2 http://localhost:3142/debian unstable/main amd64 netbase all 6.5 [12.4 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.4.8-2 [24.1 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.84.2-1 [1516 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b2 [760 kB]
Get:6 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-2 [109 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.25.5-3 [425 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.9-2 [1464 kB]
Get:10 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.21.3-5 [33.0 kB]
Get:11 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2-1+b1 [24.3 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.21.3-5 [81.5 kB]
Get:13 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B]
Get:14 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.21.3-5 [326 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.21.3-5 [138 kB]
Get:16 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-9 [19.8 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-9 [57.5 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.9+dfsg-2 [194 kB]
Get:19 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1 [76.0 kB]
Get:20 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.8.0-1 [67.7 kB]
Get:21 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.11.0-1 [131 kB]
Get:22 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.11.0-1 [29.3 kB]
Get:23 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get:24 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b5 [58.8 kB]
Get:25 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get:26 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.13.0-5 [375 kB]
Get:27 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 2.2.0-4+b2 [119 kB]
Get:28 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.22-1 [63.1 kB]
Get:29 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB]
Get:30 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.0.5-1 [226 kB]
Get:31 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.0.5-1 [538 kB]
Get:32 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.67-1 [35.5 kB]
Get:33 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.51-4 [82.1 kB]
Get:34 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2 [61.5 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.11.0-7 [843 kB]
Get:36 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.2-6 [169 kB]
Get:37 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.4.7-19 [128 kB]
Get:38 http://localhost:3142/debian unstable/main amd64 libksba8 amd64 1.6.7-2+b1 [136 kB]
Get:39 http://localhost:3142/debian unstable/main amd64 libnpth0t64 amd64 1.8-3 [23.2 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.4.7-19 [634 kB]
Get:41 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.18.0-1 [3125 kB]
Get:42 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB]
Get:43 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.42 [68.3 kB]
Get:44 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-2 [15.6 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB]
Get:48 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB]
Get:49 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB]
Get:50 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:51 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:52 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB]
Get:53 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB]
Get:54 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-1 [121 kB]
Get:55 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB]
Get:57 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.30-1 [105 kB]
Get:58 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB]
Get:59 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.68-1 [217 kB]
Get:60 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B]
Get:61 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB]
Get:62 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB]
Get:63 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB]
Get:64 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB]
Get:65 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB]
Get:66 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB]
Get:67 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get:68 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:69 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:70 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B]
Get:71 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.39-1 [130 kB]
Get:72 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get:73 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get:74 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB]
Get:75 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB]
Get:76 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB]
Get:77 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-2 [32.6 kB]
Get:78 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB]
Get:79 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB]
Get:80 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB]
Get:81 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB]
Get:82 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b5 [98.1 kB]
Get:83 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB]
Get:84 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB]
Get:85 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.84-1+b1 [24.2 kB]
Get:86 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b4 [29.4 kB]
Get:87 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get:88 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB]
Get:89 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB]
Get:90 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B]
Get:91 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B]
Get:92 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB]
Get:93 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:94 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get:95 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB]
Get:96 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB]
Get:97 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB]
Get:98 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB]
Get:99 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get:100 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:101 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.00-2 [79.8 kB]
Get:102 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.12-1 [32.3 kB]
Get:103 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB]
Get:104 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB]
Get:105 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB]
Get:106 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get:107 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B]
Get:108 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB]
Get:109 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.089-1 [223 kB]
Get:110 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.23-1 [23.9 kB]
Get:111 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB]
Get:112 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:113 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.78-1 [183 kB]
Get:114 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB]
Get:115 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB]
Get:116 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.027-1 [11.8 kB]
Get:117 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB]
Get:118 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB]
Get:119 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB]
Get:120 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB]
Get:121 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB]
Get:122 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.15-3 [39.0 kB]
Get:123 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB]
Get:124 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1 [36.0 kB]
Get:125 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB]
Get:126 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:127 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB]
Get:128 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB]
Get:129 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:130 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B]
Get:131 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.5.11-1+b1 [144 kB]
Get:132 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:133 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB]
Get:134 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB]
Get:135 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:136 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.148-1 [56.7 kB]
Get:137 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b4 [17.5 kB]
Get:138 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB]
Get:139 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.636-1+b3 [42.3 kB]
Get:140 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB]
Get:141 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b3 [100 kB]
Get:142 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b3 [104 kB]
Get:143 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B]
Get:144 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.48-2 [65.7 kB]
Get:145 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.30-1+b1 [27.4 kB]
Get:146 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB]
Get:147 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b4 [8720 B]
Get:148 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1 [13.1 kB]
Get:149 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b1 [174 kB]
Get:150 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB]
Get:151 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.44-2+b4 [73.2 kB]
Get:152 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-3 [20.1 kB]
Get:153 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.19-1 [114 kB]
Get:154 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get:155 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get:156 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB]
Get:157 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b2 [314 kB]
Get:158 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.903.0+ds-1 [35.4 kB]
Get:159 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.12-3 [65.0 kB]
Get:160 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB]
Get:161 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB]
Get:162 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get:163 http://localhost:3142/debian unstable/main amd64 lintian all 2.122.0 [1063 kB]
Fetched 19.3 MB in 0s (123 MB/s)
Selecting previously unselected package netbase.
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Unpacking netbase (6.5) ...
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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
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update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode
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Setting up libipc-run3-perl (0.049-1) ...
Setting up libregexp-wildcards-perl (1.05-3) ...
Setting up libfile-sharedir-perl (1.118-3) ...
Setting up libaliased-perl (0.34-3) ...
Setting up netbase (6.5) ...
Setting up libngtcp2-16:amd64 (1.11.0-1) ...
Setting up libstrictures-perl (2.000006-1) ...
Setting up libsub-quote-perl (2.006008-1) ...
Setting up libdevel-stacktrace-perl (2.0500-1) ...
Setting up libclass-xsaccessor-perl (1.19-4+b5) ...
Setting up libkrb5-3:amd64 (1.21.3-5) ...
Setting up libstemmer0d:amd64 (2.2.0-4+b2) ...
Setting up libsort-versions-perl (1.62-3) ...
Setting up libssh2-1t64:amd64 (1.11.1-1) ...
Setting up libterm-readkey-perl (2.38-2+b4) ...
Setting up libfont-ttf-perl (1.06-2) ...
Setting up libtext-levenshteinxs-perl (0.03-5+b4) ...
Setting up libperlio-gzip-perl (0.20-1+b4) ...
Setting up libhtml-html5-entities-perl (0.004-3) ...
Setting up libsereal-decoder-perl (5.004+ds-1+b3) ...
Setting up libmarkdown2:amd64 (2.2.7-2.1) ...
Setting up libldap2:amd64 (2.6.9+dfsg-2) ...
Setting up liburi-perl (5.30-1) ...
Setting up iso-codes (4.18.0-1) ...
Setting up libnet-ipv6addr-perl (1.02-1) ...
Setting up libdata-validate-ip-perl (0.31-1) ...
Setting up libemail-address-xs-perl (1.05-1+b4) ...
Setting up libnet-ssleay-perl:amd64 (1.94-3) ...
Setting up libksba8:amd64 (1.6.7-2+b1) ...
Setting up libhttp-date-perl (6.06-1) ...
Setting up libfile-basedir-perl (0.09-2) ...
Setting up libfile-listing-perl (6.16-1) ...
Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Setting up libnet-http-perl (6.23-1) ...
Setting up libtext-markdown-discount-perl (0.18-1) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up libdevel-callchecker-perl:amd64 (0.009-2) ...
Setting up libxml-sax-perl (1.02+dfsg-4) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up libglib2.0-0t64:amd64 (2.84.2-1) ...
No schema files found: doing nothing.
Setting up libdata-validate-uri-perl (0.07-3) ...
Setting up libxs-parse-keyword-perl (0.48-2) ...
Setting up libp11-kit0:amd64 (0.25.5-3) ...
Setting up libgssapi-krb5-2:amd64 (1.21.3-5) ...
Setting up libdata-optlist-perl (0.114-1) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up libsyntax-keyword-try-perl (0.30-1+b1) ...
Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ...
Setting up libio-socket-ssl-perl (2.089-1) ...
Setting up gpg (2.4.7-19) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (7.00-2) ...
Setting up libhtml-form-perl (6.12-1) ...
Setting up libgnutls30t64:amd64 (3.8.9-2) ...
Setting up libiterator-perl (0.03+ds1-2) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up libiterator-util-perl (0.02+ds1-2) ...
Setting up libhttp-cookies-perl (6.11-1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b4) ...
Setting up libcgi-pm-perl (4.68-1) ...
Setting up libmodule-runtime-perl (0.018-1) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b5) ...
Setting up libconst-fast-perl (0.014-2) ...
Setting up libdata-dpath-perl (0.60-1) ...
Setting up libngtcp2-crypto-gnutls8:amd64 (1.11.0-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libimport-into-perl (1.002005-2) ...
Setting up libmoo-perl (2.005005-1) ...
Setting up libcurl3t64-gnutls:amd64 (8.13.0-5) ...
Setting up liblist-someutils-perl (0.59-1) ...
Setting up libmoox-aliases-perl (0.001006-2) ...
Setting up libb-hooks-endofscope-perl (0.28-2) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up liblwp-protocol-https-perl (6.14-1) ...
Setting up libwww-perl (6.78-1) ...
Setting up libhtml-tokeparser-simple-perl (3.16-4) ...
Setting up libwww-mechanize-perl (2.19-1) ...
Processing triggers for libc-bin (2.41-8) ...
Processing triggers for man-db (2.13.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for libglib2.0-0t64:armhf (2.84.2-1) ...
/var/lib/dpkg/info/libglib2.0-0t64:armhf.postinst: 17: /usr/lib/arm-linux-gnueabihf/glib-2.0/glib-compile-schemas: Exec format error
Setting up shared-mime-info (2.4-5+b2) ...
Setting up libxmlb2:amd64 (0.3.22-1) ...
Setting up libappstream5:amd64 (1.0.5-1) ...
Setting up appstream (1.0.5-1) ...
✔ Metadata cache was updated successfully.
Setting up lintian (2.122.0) ...
Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ...
Processing triggers for libc-bin (2.41-8) ...
Running lintian...

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: n/a
Build-Time: 390
Distribution: unstable
Foreign Architectures: armhf
Host Architecture: armhf
Install-Time: 20
Job: vt_0.57721+ds-3
Lintian: pass
Machine Architecture: amd64
Package: vt
Package-Time: 420
Source-Version: 0.57721+ds-3
Space: n/a
Status: successful
Version: 0.57721+ds-3
--------------------------------------------------------------------------------
Finished at 2025-05-25T11:11:38Z
Build needed 00:07:00, no disk space