sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | vt 0.57721+ds-3 (ppc64el) Wed, 19 May 2021 09:42:13 +0000 | +==============================================================================+ Package: vt Version: 0.57721+ds-3 Source Version: 0.57721+ds-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: ppc64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-e9f3336e-5585-425d-99f1-f3460ee977ad' with '<>' I: NOTICE: Log filtering will replace 'build/vt-MxwbUP/resolver-XyRI73' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [157 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-05-19-0800.58-F-2021-05-19-0800.58.pdiff [3209 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-05-19-0800.58-F-2021-05-19-0800.58.pdiff [3209 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-05-19-0800.58-F-2021-05-19-0800.58.pdiff [1442 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-05-19-0800.58-F-2021-05-19-0800.58.pdiff [1442 B] Get:6 http://debian.oregonstate.edu/debian unstable/main ppc64el Packages [8454 kB] Fetched 8743 kB in 3s (2938 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'vt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/vt.git Please use: git clone https://salsa.debian.org/med-team/vt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 18.6 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main vt 0.57721+ds-3 (dsc) [2162 B] Get:2 http://debian.oregonstate.edu/debian unstable/main vt 0.57721+ds-3 (tar) [18.6 MB] Get:3 http://debian.oregonstate.edu/debian unstable/main vt 0.57721+ds-3 (diff) [8092 B] Fetched 18.6 MB in 0s (128 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/vt-MxwbUP/vt-0.57721+ds' with '<>' I: NOTICE: Log filtering will replace 'build/vt-MxwbUP' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, liblzma-dev, libcurl4-gnutls-dev, libssl-dev, libdeflate-dev, libhts-dev, libpcre2-dev, libsvm-dev, libtclap-dev, r-mathlib, r-base-core, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, liblzma-dev, libcurl4-gnutls-dev, libssl-dev, libdeflate-dev, libhts-dev, libpcre2-dev, libsvm-dev, libtclap-dev, r-mathlib, r-base-core, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-ppc64el:amd64, libc-dev:ppc64el, libstdc++-dev:ppc64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [470 B] Get:5 copy:/<>/apt_archive ./ Packages [557 B] Fetched 1984 B in 0s (88.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils build-essential ca-certificates cpp-10-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-10 g++-10-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-10-base:ppc64el gcc-10-cross-base gcc-10-powerpc64le-linux-gnu gcc-10-powerpc64le-linux-gnu-base gcc-9-base:ppc64el gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:ppc64el libasan6-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libblas3:ppc64el libblkid1:ppc64el libbrotli1 libbrotli1:ppc64el libbsd0:ppc64el libbz2-1.0:ppc64el libbz2-dev:ppc64el libc6:ppc64el libc6-dev libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcairo2:ppc64el libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:ppc64el libcrypt1:ppc64el libcurl3-gnutls:ppc64el libcurl4:ppc64el libcurl4-gnutls-dev:ppc64el libdatrie1:ppc64el libdb5.3:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:ppc64el libdeflate0:ppc64el libdpkg-perl libelf1 libexpat1 libexpat1:ppc64el libffi7:ppc64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfontconfig1:ppc64el libfreetype6 libfreetype6:ppc64el libfribidi0:ppc64el libgcc-10-dev-ppc64el-cross libgcc-9-dev:ppc64el libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgfortran5:ppc64el libglib2.0-0:ppc64el libgmp10:ppc64el libgnutls30:ppc64el libgomp1:ppc64el libgomp1-ppc64el-cross libgraphite2-3:ppc64el libgssapi-krb5-2:ppc64el libharfbuzz0b:ppc64el libhogweed6:ppc64el libhts-dev:ppc64el libhts3:ppc64el libice6:ppc64el libicu67 libicu67:ppc64el libidn2-0:ppc64el libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross libjbig0:ppc64el libjpeg62-turbo:ppc64el libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el libkrb5support0:ppc64el liblapack3:ppc64el libldap-2.4-2:ppc64el liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross liblzma-dev:ppc64el liblzma5:ppc64el libmagic-mgc libmagic1 libmd0:ppc64el libmount1:ppc64el libnettle8:ppc64el libnghttp2-14:ppc64el libnsl-dev libnsl-dev:ppc64el libnsl2:ppc64el libp11-kit0:ppc64el libpango-1.0-0:ppc64el libpangocairo-1.0-0:ppc64el libpangoft2-1.0-0:ppc64el libpaper-utils libpaper1 libpcre2-16-0:ppc64el libpcre2-32-0:ppc64el libpcre2-8-0:ppc64el libpcre2-dev:ppc64el libpcre2-posix2:ppc64el libpcre3:ppc64el libperl5.32 libpipeline1 libpixman-1-0:ppc64el libpng16-16 libpng16-16:ppc64el libpsl5:ppc64el libquadmath0:ppc64el libquadmath0-ppc64el-cross libreadline8:ppc64el librtmp1:ppc64el libsasl2-2:ppc64el libsasl2-modules-db:ppc64el libselinux1:ppc64el libsigsegv2 libsm6:ppc64el libssh2-1:ppc64el libssl-dev:ppc64el libssl1.1:ppc64el libstdc++-10-dev libstdc++-10-dev-ppc64el-cross libstdc++-9-dev:ppc64el libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libsvm-dev:ppc64el libsvm3:ppc64el libtasn1-6:ppc64el libtcl8.6:ppc64el libtclap-dev:ppc64el libthai-data libthai0:ppc64el libtiff5:ppc64el libtinfo6:ppc64el libtirpc-dev libtirpc-dev:ppc64el libtirpc3:ppc64el libtk8.6:ppc64el libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libunistring2:ppc64el libuuid1:ppc64el libwebp6:ppc64el libx11-6:ppc64el libx11-data libxau6:ppc64el libxcb-render0:ppc64el libxcb-shm0:ppc64el libxcb1:ppc64el libxdmcp6:ppc64el libxext6:ppc64el libxft2:ppc64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxrender1:ppc64el libxss1:ppc64el libxt6:ppc64el libyaml-perl libzstd1:ppc64el linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db openssl perl perl-modules-5.32 po-debconf r-base-core:ppc64el r-mathlib:ppc64el readline-common sensible-utils ucf unzip x11-common xdg-utils zip zlib1g:ppc64el zlib1g-dev:ppc64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc manpages-dev flex bison gdb-powerpc64le-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:ppc64el libc-l10n:ppc64el locales:ppc64el glibc-doc manpages-dev:ppc64el libcurl4-doc:ppc64el libgnutls28-dev:ppc64el libidn11-dev:ppc64el libkrb5-dev:ppc64el libldap2-dev:ppc64el librtmp-dev:ppc64el libssh2-1-dev:ppc64el pkg-config:ppc64el gnupg git bzr gnutls-bin:ppc64el krb5-doc:ppc64el krb5-user:ppc64el liblzma-doc:ppc64el libssl-doc:ppc64el libstdc++-10-doc libstdc++-9-doc:ppc64el tcl8.6:ppc64el tk8.6:ppc64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl elpa-ess:ppc64el r-doc-info:ppc64el | r-doc-pdf:ppc64el r-base-html:ppc64el readline-doc Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx bzip2-doc:ppc64el libnss-nis:ppc64el libnss-nisplus:ppc64el libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data:ppc64el shared-mime-info:ppc64el xdg-user-dirs:ppc64el krb5-locales:ppc64el libldap-common:ppc64el publicsuffix:ppc64el libsasl2-modules:ppc64el libltdl-dev uuid-runtime:ppc64el libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl r-recommended:ppc64el r-base-dev:ppc64el r-doc-html:ppc64el libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-powerpc64le-linux-gnu bsdextrautils build-essential ca-certificates cpp-10-powerpc64le-linux-gnu cpp-powerpc64le-linux-gnu cross-config crossbuild-essential-ppc64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file fontconfig fontconfig-config fonts-dejavu-core g++ g++-10 g++-10-powerpc64le-linux-gnu g++-powerpc64le-linux-gnu gcc-10-base:ppc64el gcc-10-cross-base gcc-10-powerpc64le-linux-gnu gcc-10-powerpc64le-linux-gnu-base gcc-9-base:ppc64el gcc-powerpc64le-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:ppc64el libasan6-ppc64el-cross libatomic1:ppc64el libatomic1-ppc64el-cross libblas3:ppc64el libblkid1:ppc64el libbrotli1 libbrotli1:ppc64el libbsd0:ppc64el libbz2-1.0:ppc64el libbz2-dev:ppc64el libc6:ppc64el libc6-dev libc6-dev:ppc64el libc6-dev-ppc64el-cross libc6-ppc64el-cross libcairo2:ppc64el libcom-err2:ppc64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:ppc64el libcrypt1:ppc64el libcurl3-gnutls:ppc64el libcurl4:ppc64el libcurl4-gnutls-dev:ppc64el libdatrie1:ppc64el libdb5.3:ppc64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:ppc64el libdeflate0:ppc64el libdpkg-perl libelf1 libexpat1 libexpat1:ppc64el libffi7:ppc64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfontconfig1:ppc64el libfreetype6 libfreetype6:ppc64el libfribidi0:ppc64el libgcc-10-dev-ppc64el-cross libgcc-9-dev:ppc64el libgcc-s1:ppc64el libgcc-s1-ppc64el-cross libgfortran5:ppc64el libglib2.0-0:ppc64el libgmp10:ppc64el libgnutls30:ppc64el libgomp1:ppc64el libgomp1-ppc64el-cross libgraphite2-3:ppc64el libgssapi-krb5-2:ppc64el libharfbuzz0b:ppc64el libhogweed6:ppc64el libhts-dev:ppc64el libhts3:ppc64el libice6:ppc64el libicu67 libicu67:ppc64el libidn2-0:ppc64el libio-string-perl libitm1:ppc64el libitm1-ppc64el-cross libjbig0:ppc64el libjpeg62-turbo:ppc64el libk5crypto3:ppc64el libkeyutils1:ppc64el libkrb5-3:ppc64el libkrb5support0:ppc64el liblapack3:ppc64el libldap-2.4-2:ppc64el liblocale-gettext-perl liblsan0:ppc64el liblsan0-ppc64el-cross liblzma-dev:ppc64el liblzma5:ppc64el libmagic-mgc libmagic1 libmd0:ppc64el libmount1:ppc64el libnettle8:ppc64el libnghttp2-14:ppc64el libnsl-dev libnsl-dev:ppc64el libnsl2:ppc64el libp11-kit0:ppc64el libpango-1.0-0:ppc64el libpangocairo-1.0-0:ppc64el libpangoft2-1.0-0:ppc64el libpaper-utils libpaper1 libpcre2-16-0:ppc64el libpcre2-32-0:ppc64el libpcre2-8-0:ppc64el libpcre2-dev:ppc64el libpcre2-posix2:ppc64el libpcre3:ppc64el libperl5.32 libpipeline1 libpixman-1-0:ppc64el libpng16-16 libpng16-16:ppc64el libpsl5:ppc64el libquadmath0:ppc64el libquadmath0-ppc64el-cross libreadline8:ppc64el librtmp1:ppc64el libsasl2-2:ppc64el libsasl2-modules-db:ppc64el libselinux1:ppc64el libsigsegv2 libsm6:ppc64el libssh2-1:ppc64el libssl-dev:ppc64el libssl1.1:ppc64el libstdc++-10-dev libstdc++-10-dev-ppc64el-cross libstdc++-9-dev:ppc64el libstdc++6:ppc64el libstdc++6-ppc64el-cross libsub-override-perl libsvm-dev:ppc64el libsvm3:ppc64el libtasn1-6:ppc64el libtcl8.6:ppc64el libtclap-dev:ppc64el libthai-data libthai0:ppc64el libtiff5:ppc64el libtinfo6:ppc64el libtirpc-dev libtirpc-dev:ppc64el libtirpc3:ppc64el libtk8.6:ppc64el libtool libtsan0:ppc64el libtsan0-ppc64el-cross libubsan1:ppc64el libubsan1-ppc64el-cross libuchardet0 libunistring2:ppc64el libuuid1:ppc64el libwebp6:ppc64el libx11-6:ppc64el libx11-data libxau6:ppc64el libxcb-render0:ppc64el libxcb-shm0:ppc64el libxcb1:ppc64el libxdmcp6:ppc64el libxext6:ppc64el libxft2:ppc64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxrender1:ppc64el libxss1:ppc64el libxt6:ppc64el libyaml-perl libzstd1:ppc64el linux-libc-dev:ppc64el linux-libc-dev-ppc64el-cross m4 man-db openssl perl perl-modules-5.32 po-debconf r-base-core:ppc64el r-mathlib:ppc64el readline-common sbuild-build-depends-main-dummy:ppc64el sensible-utils ucf unzip x11-common xdg-utils zip zlib1g:ppc64el zlib1g-dev:ppc64el 0 upgraded, 225 newly installed, 0 to remove and 0 not upgraded. Need to get 296 MB of archives. After this operation, 1155 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [984 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-7 [145 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-4 [2823 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-4 [4117 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-4 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-10-base ppc64el 10.2.1-6 [201 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main ppc64el gcc-9-base ppc64el 9.3.0-22 [198 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.1-2 [73.8 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-s1 ppc64el 10.2.1-6 [30.3 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt1 ppc64el 1:4.4.18-4 [96.7 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6 ppc64el 2.31-12 [2832 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main ppc64el libtinfo6 ppc64el 6.2+20201114-2 [349 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main ppc64el libreadline8 ppc64el 8.1-2 [179 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 openssl amd64 1.1.1k-1 [850 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 ca-certificates all 20210119 [158 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-14 [313 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.3-2 [814 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-powerpc64le-linux-gnu amd64 2.35.2-2 [2302 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.18-4 [104 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.1-1 [190 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-12 [2346 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.1-6 [9380 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.9 [1537 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.9 [2153 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-powerpc64le-linux-gnu-base amd64 10.2.1-6cross1 [202 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-powerpc64le-linux-gnu amd64 10.2.1-6cross1 [42.9 MB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-powerpc64le-linux-gnu amd64 4:10.2.1-1 [16.8 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu1 [31.5 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.1-6cross1 [197 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-ppc64el-cross all 2.31-9cross4 [1534 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-ppc64el-cross all 10.2.1-6cross1 [30.5 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-ppc64el-cross all 10.2.1-6cross1 [106 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-ppc64el-cross all 10.2.1-6cross1 [28.4 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-ppc64el-cross all 10.2.1-6cross1 [9712 B] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-ppc64el-cross all 10.2.1-6cross1 [2096 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-ppc64el-cross all 10.2.1-6cross1 [847 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-ppc64el-cross all 10.2.1-6cross1 [2025 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-ppc64el-cross all 10.2.1-6cross1 [497 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-ppc64el-cross all 10.2.1-6cross1 [798 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0-ppc64el-cross all 10.2.1-6cross1 [149 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-ppc64el-cross all 10.2.1-6cross1 [1249 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-powerpc64le-linux-gnu amd64 10.2.1-6cross1 [48.9 MB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-powerpc64le-linux-gnu amd64 4:10.2.1-1 [1468 B] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-ppc64el-cross all 5.10.13-1cross4 [1391 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-ppc64el-cross all 2.31-9cross4 [2382 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-ppc64el-cross all 10.2.1-6cross1 [1775 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-powerpc64le-linux-gnu amd64 10.2.1-6cross1 [46.0 MB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 g++-powerpc64le-linux-gnu amd64 4:10.2.1-1 [1184 B] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-6 [8625 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.6 [692 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu1 [30.5 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu1 [41.6 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-ppc64el all 12.9 [6716 B] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.3.4 [189 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.12.0-1 [26.3 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.12.0-1 [15.4 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.183-3 [165 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.3.4 [1049 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libpng16-16 amd64 1.6.37-3 [294 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libfreetype6 amd64 2.10.4+dfsg-1 [418 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-4.2 [281 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-4.2 [347 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig amd64 2.13.1-4.2 [417 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main ppc64el libasan5 ppc64el 9.3.0-22 [407 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main ppc64el libatomic1 ppc64el 10.2.1-6 [9856 B] Get:107 http://debian.oregonstate.edu/debian unstable/main ppc64el libblas3 ppc64el 3.9.0-3 [118 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main ppc64el libblkid1 ppc64el 2.36.1-7 [211 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main ppc64el libbrotli1 ppc64el 1.0.9-2+b2 [295 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main ppc64el libmd0 ppc64el 1.0.3-3 [29.8 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main ppc64el libbsd0 ppc64el 0.11.3-1 [113 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main ppc64el libbz2-1.0 ppc64el 1.0.8-4 [51.0 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main ppc64el linux-libc-dev ppc64el 5.10.28-1 [1314 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main ppc64el libcrypt-dev ppc64el 1:4.4.18-4 [119 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main ppc64el libcom-err2 ppc64el 1.46.2-1 [74.6 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main ppc64el libkrb5support0 ppc64el 1.18.3-5 [68.6 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main ppc64el libk5crypto3 ppc64el 1.18.3-5 [125 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main ppc64el libkeyutils1 ppc64el 1.6.1-2 [16.7 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main ppc64el libssl1.1 ppc64el 1.1.1k-1 [1538 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main ppc64el libkrb5-3 ppc64el 1.18.3-5 [392 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main ppc64el libgssapi-krb5-2 ppc64el 1.18.3-5 [179 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main ppc64el libtirpc3 ppc64el 1.3.1-1 [95.0 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main ppc64el libnsl2 ppc64el 1.3.0-2 [44.8 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main ppc64el libtirpc-dev ppc64el 1.3.1-1 [208 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main ppc64el libnsl-dev ppc64el 1.3.0-2 [73.6 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main ppc64el libc6-dev ppc64el 2.31-12 [2388 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main ppc64el libbz2-dev ppc64el 1.0.8-4 [35.8 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main ppc64el libexpat1 ppc64el 2.2.10-2 [91.6 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g ppc64el 1:1.2.11.dfsg-2 [94.7 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main ppc64el libpng16-16 ppc64el 1.6.37-3 [309 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main ppc64el libfreetype6 ppc64el 2.10.4+dfsg-1 [454 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main ppc64el libuuid1 ppc64el 2.36.1-7 [85.4 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main ppc64el libfontconfig1 ppc64el 2.13.1-4.2 [364 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main ppc64el libpixman-1-0 ppc64el 0.40.0-1 [492 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main ppc64el libxau6 ppc64el 1:1.0.9-1 [20.3 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main ppc64el libxdmcp6 ppc64el 1:1.1.2-3 [26.2 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main ppc64el libxcb1 ppc64el 1.14-3 [145 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.7.0-2 [310 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main ppc64el libx11-6 ppc64el 2:1.7.0-2 [808 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main ppc64el libxcb-render0 ppc64el 1.14-3 [112 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main ppc64el libxcb-shm0 ppc64el 1.14-3 [102 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main ppc64el libxext6 ppc64el 2:1.3.3-1.1 [54.5 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main ppc64el libxrender1 ppc64el 1:0.9.10-1 [31.6 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main ppc64el libcairo2 ppc64el 1.16.0-5 [737 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main ppc64el libgmp10 ppc64el 2:6.2.1+dfsg-1 [577 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main ppc64el libnettle8 ppc64el 3.7.2-3 [296 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main ppc64el libhogweed6 ppc64el 3.7.2-3 [323 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main ppc64el libunistring2 ppc64el 0.9.10-4 [384 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main ppc64el libidn2-0 ppc64el 2.3.0-5 [89.2 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main ppc64el libffi7 ppc64el 3.3-6 [24.1 kB] Get:151 http://debian.oregonstate.edu/debian unstable/main ppc64el libp11-kit0 ppc64el 0.23.22-1 [339 kB] Get:152 http://debian.oregonstate.edu/debian unstable/main ppc64el libtasn1-6 ppc64el 4.16.0-2 [59.5 kB] Get:153 http://debian.oregonstate.edu/debian unstable/main ppc64el libgnutls30 ppc64el 3.7.1-4 [1314 kB] Get:154 http://debian.oregonstate.edu/debian unstable/main ppc64el libdb5.3 ppc64el 5.3.28+dfsg1-0.8 [722 kB] Get:155 http://debian.oregonstate.edu/debian unstable/main ppc64el libsasl2-modules-db ppc64el 2.1.27+dfsg-2.1 [71.2 kB] Get:156 http://debian.oregonstate.edu/debian unstable/main ppc64el libsasl2-2 ppc64el 2.1.27+dfsg-2.1 [115 kB] Get:157 http://debian.oregonstate.edu/debian unstable/main ppc64el libldap-2.4-2 ppc64el 2.4.57+dfsg-3 [248 kB] Get:158 http://debian.oregonstate.edu/debian unstable/main ppc64el libnghttp2-14 ppc64el 1.43.0-1 [85.0 kB] Get:159 http://debian.oregonstate.edu/debian unstable/main ppc64el libpsl5 ppc64el 0.21.0-1.2 [59.3 kB] Get:160 http://debian.oregonstate.edu/debian unstable/main ppc64el librtmp1 ppc64el 2.4+20151223.gitfa8646d.1-2+b2 [65.9 kB] Get:161 http://debian.oregonstate.edu/debian unstable/main ppc64el libssh2-1 ppc64el 1.9.0-3 [178 kB] Get:162 http://debian.oregonstate.edu/debian unstable/main ppc64el libcurl3-gnutls ppc64el 7.74.0-1.2 [353 kB] Get:163 http://debian.oregonstate.edu/debian unstable/main ppc64el libcurl4 ppc64el 7.74.0-1.2 [356 kB] Get:164 http://debian.oregonstate.edu/debian unstable/main ppc64el libcurl4-gnutls-dev ppc64el 7.74.0-1.2 [456 kB] Get:165 http://debian.oregonstate.edu/debian unstable/main ppc64el libdatrie1 ppc64el 0.2.13-1 [44.8 kB] Get:166 http://debian.oregonstate.edu/debian unstable/main ppc64el libdeflate0 ppc64el 1.7-1 [43.4 kB] Get:167 http://debian.oregonstate.edu/debian unstable/main ppc64el libdeflate-dev ppc64el 1.7-1 [41.7 kB] Get:168 http://debian.oregonstate.edu/debian unstable/main ppc64el libfribidi0 ppc64el 1.0.8-2 [66.0 kB] Get:169 http://debian.oregonstate.edu/debian unstable/main ppc64el libgomp1 ppc64el 10.2.1-6 [108 kB] Get:170 http://debian.oregonstate.edu/debian unstable/main ppc64el libitm1 ppc64el 10.2.1-6 [28.8 kB] Get:171 http://debian.oregonstate.edu/debian unstable/main ppc64el liblsan0 ppc64el 10.2.1-6 [847 kB] Get:172 http://debian.oregonstate.edu/debian unstable/main ppc64el libtsan0 ppc64el 10.2.1-6 [2032 kB] Get:173 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++6 ppc64el 10.2.1-6 [538 kB] Get:174 http://debian.oregonstate.edu/debian unstable/main ppc64el libubsan1 ppc64el 10.2.1-6 [798 kB] Get:175 http://debian.oregonstate.edu/debian unstable/main ppc64el libquadmath0 ppc64el 10.2.1-6 [149 kB] Get:176 http://debian.oregonstate.edu/debian unstable/main ppc64el libgcc-9-dev ppc64el 9.3.0-22 [1262 kB] Get:177 http://debian.oregonstate.edu/debian unstable/main ppc64el libgfortran5 ppc64el 10.2.1-6 [427 kB] Get:178 http://debian.oregonstate.edu/debian unstable/main ppc64el libpcre2-8-0 ppc64el 10.36-2 [234 kB] Get:179 http://debian.oregonstate.edu/debian unstable/main ppc64el libselinux1 ppc64el 3.1-3 [98.6 kB] Get:180 http://debian.oregonstate.edu/debian unstable/main ppc64el libmount1 ppc64el 2.36.1-7 [230 kB] Get:181 http://debian.oregonstate.edu/debian unstable/main ppc64el libpcre3 ppc64el 2:8.39-13 [336 kB] Get:182 http://debian.oregonstate.edu/debian unstable/main ppc64el libglib2.0-0 ppc64el 2.66.8-1 [1423 kB] Get:183 http://debian.oregonstate.edu/debian unstable/main ppc64el libgraphite2-3 ppc64el 1.3.14-1 [86.8 kB] Get:184 http://debian.oregonstate.edu/debian unstable/main ppc64el libharfbuzz0b ppc64el 2.7.4-1 [1497 kB] Get:185 http://debian.oregonstate.edu/debian unstable/main ppc64el liblzma5 ppc64el 5.2.5-2 [178 kB] Get:186 http://debian.oregonstate.edu/debian unstable/main ppc64el libhts3 ppc64el 1.11-4 [416 kB] Get:187 http://debian.oregonstate.edu/debian unstable/main ppc64el liblzma-dev ppc64el 5.2.5-2 [242 kB] Get:188 http://debian.oregonstate.edu/debian unstable/main ppc64el zlib1g-dev ppc64el 1:1.2.11.dfsg-2 [195 kB] Get:189 http://debian.oregonstate.edu/debian unstable/main ppc64el libhts-dev ppc64el 1.11-4 [3875 kB] Get:190 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+22 [252 kB] Get:191 http://debian.oregonstate.edu/debian unstable/main ppc64el libice6 ppc64el 2:1.0.10-1 [63.3 kB] Get:192 http://debian.oregonstate.edu/debian unstable/main ppc64el libicu67 ppc64el 67.1-6 [8742 kB] Get:193 http://debian.oregonstate.edu/debian unstable/main ppc64el libjbig0 ppc64el 2.1-3.1+b2 [30.4 kB] Get:194 http://debian.oregonstate.edu/debian unstable/main ppc64el libjpeg62-turbo ppc64el 1:2.0.6-4 [159 kB] Get:195 http://debian.oregonstate.edu/debian unstable/main ppc64el liblapack3 ppc64el 3.9.0-3 [1673 kB] Get:196 http://debian.oregonstate.edu/debian unstable/main amd64 libthai-data all 0.1.28-4 [171 kB] Get:197 http://debian.oregonstate.edu/debian unstable/main ppc64el libthai0 ppc64el 0.1.28-4 [56.0 kB] Get:198 http://debian.oregonstate.edu/debian unstable/main ppc64el libpango-1.0-0 ppc64el 1.46.2-3 [201 kB] Get:199 http://debian.oregonstate.edu/debian unstable/main ppc64el libpangoft2-1.0-0 ppc64el 1.46.2-3 [65.5 kB] Get:200 http://debian.oregonstate.edu/debian unstable/main ppc64el libpangocairo-1.0-0 ppc64el 1.46.2-3 [52.5 kB] Get:201 http://debian.oregonstate.edu/debian unstable/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:202 http://debian.oregonstate.edu/debian unstable/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:203 http://debian.oregonstate.edu/debian unstable/main ppc64el libpcre2-16-0 ppc64el 10.36-2 [220 kB] Get:204 http://debian.oregonstate.edu/debian unstable/main ppc64el libpcre2-32-0 ppc64el 10.36-2 [211 kB] Get:205 http://debian.oregonstate.edu/debian unstable/main ppc64el libpcre2-posix2 ppc64el 10.36-2 [49.3 kB] Get:206 http://debian.oregonstate.edu/debian unstable/main ppc64el libpcre2-dev ppc64el 10.36-2 [684 kB] Get:207 http://debian.oregonstate.edu/debian unstable/main ppc64el libsm6 ppc64el 2:1.2.3-1 [36.0 kB] Get:208 http://debian.oregonstate.edu/debian unstable/main ppc64el libssl-dev ppc64el 1.1.1k-1 [1841 kB] Get:209 http://debian.oregonstate.edu/debian unstable/main ppc64el libstdc++-9-dev ppc64el 9.3.0-22 [1756 kB] Get:210 http://debian.oregonstate.edu/debian unstable/main ppc64el libsvm3 ppc64el 3.24+ds-6 [46.5 kB] Get:211 http://debian.oregonstate.edu/debian unstable/main ppc64el libsvm-dev ppc64el 3.24+ds-6 [67.7 kB] Get:212 http://debian.oregonstate.edu/debian unstable/main ppc64el libtcl8.6 ppc64el 8.6.11+dfsg-1 [1075 kB] Get:213 http://debian.oregonstate.edu/debian unstable/main ppc64el libtclap-dev ppc64el 1.2.4-1 [7899 kB] Get:214 http://debian.oregonstate.edu/debian unstable/main ppc64el libwebp6 ppc64el 0.6.1-2+b1 [248 kB] Get:215 http://debian.oregonstate.edu/debian unstable/main ppc64el libzstd1 ppc64el 1.4.8+dfsg-2.1 [343 kB] Get:216 http://debian.oregonstate.edu/debian unstable/main ppc64el libtiff5 ppc64el 4.2.0-1 [300 kB] Get:217 http://debian.oregonstate.edu/debian unstable/main ppc64el libxft2 ppc64el 2.3.2-2 [56.3 kB] Get:218 http://debian.oregonstate.edu/debian unstable/main ppc64el libxss1 ppc64el 1:1.2.3-1 [18.2 kB] Get:219 http://debian.oregonstate.edu/debian unstable/main ppc64el libtk8.6 ppc64el 8.6.11-2 [821 kB] Get:220 http://debian.oregonstate.edu/debian unstable/main ppc64el libxt6 ppc64el 1:1.2.0-1 [198 kB] Get:221 http://debian.oregonstate.edu/debian unstable/main amd64 zip amd64 3.0-12 [232 kB] Get:222 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:223 http://debian.oregonstate.edu/debian unstable/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:224 http://debian.oregonstate.edu/debian unstable/main ppc64el r-base-core ppc64el 4.0.4-1 [25.1 MB] Get:225 http://debian.oregonstate.edu/debian unstable/main ppc64el r-mathlib ppc64el 4.0.4-1 [2093 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 296 MB in 21s (14.4 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10486 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-7_amd64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.1-4_all.deb ... Unpacking perl-modules-5.32 (5.32.1-4) ... 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Unpacking libsvm-dev:ppc64el (3.24+ds-6) ... Selecting previously unselected package libtcl8.6:ppc64el. Preparing to unpack .../210-libtcl8.6_8.6.11+dfsg-1_ppc64el.deb ... Unpacking libtcl8.6:ppc64el (8.6.11+dfsg-1) ... Selecting previously unselected package libtclap-dev:ppc64el. Preparing to unpack .../211-libtclap-dev_1.2.4-1_ppc64el.deb ... Unpacking libtclap-dev:ppc64el (1.2.4-1) ... Selecting previously unselected package libwebp6:ppc64el. Preparing to unpack .../212-libwebp6_0.6.1-2+b1_ppc64el.deb ... Unpacking libwebp6:ppc64el (0.6.1-2+b1) ... Selecting previously unselected package libzstd1:ppc64el. Preparing to unpack .../213-libzstd1_1.4.8+dfsg-2.1_ppc64el.deb ... Unpacking libzstd1:ppc64el (1.4.8+dfsg-2.1) ... Selecting previously unselected package libtiff5:ppc64el. Preparing to unpack .../214-libtiff5_4.2.0-1_ppc64el.deb ... Unpacking libtiff5:ppc64el (4.2.0-1) ... Selecting previously unselected package libxft2:ppc64el. Preparing to unpack .../215-libxft2_2.3.2-2_ppc64el.deb ... Unpacking libxft2:ppc64el (2.3.2-2) ... Selecting previously unselected package libxss1:ppc64el. Preparing to unpack .../216-libxss1_1%3a1.2.3-1_ppc64el.deb ... Unpacking libxss1:ppc64el (1:1.2.3-1) ... Selecting previously unselected package libtk8.6:ppc64el. Preparing to unpack .../217-libtk8.6_8.6.11-2_ppc64el.deb ... Unpacking libtk8.6:ppc64el (8.6.11-2) ... Selecting previously unselected package libxt6:ppc64el. Preparing to unpack .../218-libxt6_1%3a1.2.0-1_ppc64el.deb ... Unpacking libxt6:ppc64el (1:1.2.0-1) ... Selecting previously unselected package zip. Preparing to unpack .../219-zip_3.0-12_amd64.deb ... Unpacking zip (3.0-12) ... Selecting previously unselected package unzip. Preparing to unpack .../220-unzip_6.0-26_amd64.deb ... Unpacking unzip (6.0-26) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../221-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package r-base-core:ppc64el. Preparing to unpack .../222-r-base-core_4.0.4-1_ppc64el.deb ... Unpacking r-base-core:ppc64el (4.0.4-1) ... Selecting previously unselected package r-mathlib:ppc64el. Preparing to unpack .../223-r-mathlib_4.0.4-1_ppc64el.deb ... Unpacking r-mathlib:ppc64el (4.0.4-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:ppc64el. Preparing to unpack .../224-sbuild-build-depends-main-dummy_0.invalid.0_ppc64el.deb ... Unpacking sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libexpat1:amd64 (2.2.10-2) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up gcc-10-powerpc64le-linux-gnu-base:amd64 (10.2.1-6cross1) ... Setting up bsdextrautils (2.36.1-7) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-6) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libc6-ppc64el-cross (2.31-9cross4) ... Setting up unzip (6.0-26) ... Setting up perl-modules-5.32 (5.32.1-4) ... Setting up libbrotli1:amd64 (1.0.9-2+b2) ... Setting up x11-common (1:7.7+22) ... invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:ppc64el (5.10.28-1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.39-3) ... Setting up gcc-10-base:ppc64el (10.2.1-6) ... Setting up zip (3.0-12) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu1) ... Setting up libtirpc-dev:amd64 (1.3.1-1) ... Setting up libx11-data (2:1.7.0-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libpng16-16:amd64 (1.6.37-3) ... Setting up autopoint (0.21-4) ... Setting up fonts-dejavu-core (2.37-2) ... Setting up libperl5.32:amd64 (5.32.1-4) ... Setting up gcc-10-cross-base (10.2.1-6cross1) ... Setting up libtclap-dev:ppc64el (1.2.4-1) ... Setting up libitm1-ppc64el-cross (10.2.1-6cross1) ... Setting up libatomic1-ppc64el-cross (10.2.1-6cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.14) ... Setting up libcrypt-dev:amd64 (1:4.4.18-4) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up linux-libc-dev-ppc64el-cross (5.10.13-1cross4) ... Setting up libc6-dev:amd64 (2.31-12) ... Setting up libthai-data (0.1.28-4) ... Setting up libgcc-s1-ppc64el-cross (10.2.1-6cross1) ... Setting up cpp-10-powerpc64le-linux-gnu (10.2.1-6cross1) ... Setting up binutils-powerpc64le-linux-gnu (2.35.2-2) ... Setting up openssl (1.1.1k-1) ... Setting up libelf1:amd64 (0.183-3) ... Setting up readline-common (8.1-2) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.6) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up cpp-powerpc64le-linux-gnu (4:10.2.1-1) ... Setting up gcc-9-base:ppc64el (9.3.0-22) ... Setting up gettext (0.21-4) ... Setting up libstdc++-10-dev:amd64 (10.2.1-6) ... Setting up libasan6-ppc64el-cross (10.2.1-6cross1) ... Setting up g++-10 (10.2.1-6) ... Setting up libc6-dev-ppc64el-cross (2.31-9cross4) ... Setting up libtool (2.4.6-15) ... Setting up libquadmath0-ppc64el-cross (10.2.1-6cross1) ... Setting up m4 (1.4.18-5) ... Setting up libgomp1-ppc64el-cross (10.2.1-6cross1) ... Setting up liblsan0-ppc64el-cross (10.2.1-6cross1) ... Setting up ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 129 added, 0 removed; done. Setting up perl (5.32.1-4) ... Setting up libtsan0-ppc64el-cross (10.2.1-6cross1) ... Setting up libfreetype6:amd64 (2.10.4+dfsg-1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.9) ... Setting up libstdc++6-ppc64el-cross (10.2.1-6cross1) ... Setting up autoconf (2.69-14) ... Setting up g++ (4:10.2.1-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-6) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up libfile-which-perl (1.23-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up fontconfig-config (2.13.1-4.2) ... Setting up libubsan1-ppc64el-cross (10.2.1-6cross1) ... Setting up libdebhelper-perl (13.3.4) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.9) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up build-essential (12.9) ... Setting up libfontconfig1:amd64 (2.13.1-4.2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.12.0-1) ... Setting up fontconfig (2.13.1-4.2) ... Regenerating fonts cache... done. Setting up libgcc-10-dev-ppc64el-cross (10.2.1-6cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-10-dev-ppc64el-cross (10.2.1-6cross1) ... Setting up gcc-10-powerpc64le-linux-gnu (10.2.1-6cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.12.0-1) ... Setting up g++-10-powerpc64le-linux-gnu (10.2.1-6cross1) ... Setting up debhelper (13.3.4) ... Setting up gcc-powerpc64le-linux-gnu (4:10.2.1-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-powerpc64le-linux-gnu (4:10.2.1-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu1) ... Setting up dpkg-cross (2.6.18+nmu1) ... Setting up crossbuild-essential-ppc64el (12.9) ... Setting up libcrypt1:ppc64el (1:4.4.18-4) ... Setting up libgcc-s1:ppc64el (10.2.1-6) ... Setting up libc6:ppc64el (2.31-12) ... Setting up libmd0:ppc64el (1.0.3-3) ... Setting up libcrypt-dev:ppc64el (1:4.4.18-4) ... Setting up libtasn1-6:ppc64el (4.16.0-2) ... Setting up r-mathlib:ppc64el (4.0.4-1) ... Setting up libbz2-1.0:ppc64el (1.0.8-4) ... Setting up libbsd0:ppc64el (0.11.3-1) ... Setting up libdb5.3:ppc64el (5.3.28+dfsg1-0.8) ... Setting up libblkid1:ppc64el (2.36.1-7) ... Setting up libstdc++6:ppc64el (10.2.1-6) ... Setting up liblsan0:ppc64el (10.2.1-6) ... Setting up libitm1:ppc64el (10.2.1-6) ... Setting up libsvm3:ppc64el (3.24+ds-6) ... Setting up libtinfo6:ppc64el (6.2+20201114-2) ... Setting up libtsan0:ppc64el (10.2.1-6) ... Setting up libexpat1:ppc64el (2.2.10-2) ... Setting up libgraphite2-3:ppc64el (1.3.14-1) ... Setting up libpixman-1-0:ppc64el (0.40.0-1) ... Setting up libzstd1:ppc64el (1.4.8+dfsg-2.1) ... Setting up libice6:ppc64el (2:1.0.10-1) ... Setting up libxau6:ppc64el (1:1.0.9-1) ... Setting up libxdmcp6:ppc64el (1:1.1.2-3) ... Setting up libkeyutils1:ppc64el (1.6.1-2) ... Setting up libxcb1:ppc64el (1.14-3) ... Setting up liblzma5:ppc64el (5.2.5-2) ... Setting up libicu67:ppc64el (67.1-6) ... Setting up libdatrie1:ppc64el (0.2.13-1) ... Setting up libxcb-render0:ppc64el (1.14-3) ... Setting up libssl1.1:ppc64el (1.1.1k-1) ... Setting up libbrotli1:ppc64el (1.0.9-2+b2) ... Setting up libreadline8:ppc64el (8.1-2) ... Setting up libffi7:ppc64el (3.3-6) ... Setting up libnghttp2-14:ppc64el (1.43.0-1) ... Setting up libunistring2:ppc64el (0.9.10-4) ... Setting up libdeflate0:ppc64el (1.7-1) ... Setting up zlib1g:ppc64el (1:1.2.11.dfsg-2) ... Setting up libidn2-0:ppc64el (2.3.0-5) ... Setting up libxcb-shm0:ppc64el (1.14-3) ... Setting up libcom-err2:ppc64el (1.46.2-1) ... Setting up libgomp1:ppc64el (10.2.1-6) ... Setting up libjbig0:ppc64el (2.1-3.1+b2) ... Setting up libpcre2-16-0:ppc64el (10.36-2) ... Setting up libkrb5support0:ppc64el (1.18.3-5) ... Setting up libsasl2-modules-db:ppc64el (2.1.27+dfsg-2.1) ... Setting up libthai0:ppc64el (0.1.28-4) ... Setting up libasan5:ppc64el (9.3.0-22) ... Setting up libpcre3:ppc64el (2:8.39-13) ... Setting up libpcre2-32-0:ppc64el (10.36-2) ... Setting up libblas3:ppc64el (3.9.0-3) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/blas/libblas.so.3 to provide /usr/lib/powerpc64le-linux-gnu/libblas.so.3 (libblas.so.3-powerpc64le-linux-gnu) in auto mode Setting up libjpeg62-turbo:ppc64el (1:2.0.6-4) ... Setting up libnettle8:ppc64el (3.7.2-3) ... Setting up libgmp10:ppc64el (2:6.2.1+dfsg-1) ... Setting up libfribidi0:ppc64el (1.0.8-2) ... Setting up libquadmath0:ppc64el (10.2.1-6) ... Setting up libp11-kit0:ppc64el (0.23.22-1) ... Setting up libssl-dev:ppc64el (1.1.1k-1) ... Setting up libpng16-16:ppc64el (1.6.37-3) ... Setting up libsvm-dev:ppc64el (3.24+ds-6) ... Setting up libatomic1:ppc64el (10.2.1-6) ... Setting up libuuid1:ppc64el (2.36.1-7) ... Setting up libtcl8.6:ppc64el (8.6.11+dfsg-1) ... Setting up libwebp6:ppc64el (0.6.1-2+b1) ... Setting up libpcre2-8-0:ppc64el (10.36-2) ... Setting up libk5crypto3:ppc64el (1.18.3-5) ... Setting up libsasl2-2:ppc64el (2.1.27+dfsg-2.1) ... Setting up libgfortran5:ppc64el (10.2.1-6) ... Setting up liblzma-dev:ppc64el (5.2.5-2) ... Setting up libubsan1:ppc64el (10.2.1-6) ... Setting up libx11-6:ppc64el (2:1.7.0-2) ... Setting up libssh2-1:ppc64el (1.9.0-3) ... Setting up libkrb5-3:ppc64el (1.18.3-5) ... Setting up libtiff5:ppc64el (4.2.0-1) ... Setting up libdeflate-dev:ppc64el (1.7-1) ... Setting up libsm6:ppc64el (2:1.2.3-1) ... Setting up liblapack3:ppc64el (3.9.0-3) ... update-alternatives: using /usr/lib/powerpc64le-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/powerpc64le-linux-gnu/liblapack.so.3 (liblapack.so.3-powerpc64le-linux-gnu) in auto mode Setting up libpsl5:ppc64el (0.21.0-1.2) ... Setting up libhogweed6:ppc64el (3.7.2-3) ... Setting up libxrender1:ppc64el (1:0.9.10-1) ... Setting up libxext6:ppc64el (2:1.3.3-1.1) ... Setting up libgcc-9-dev:ppc64el (9.3.0-22) ... Setting up libselinux1:ppc64el (3.1-3) ... Setting up libgnutls30:ppc64el (3.7.1-4) ... Setting up libfreetype6:ppc64el (2.10.4+dfsg-1) ... Setting up librtmp1:ppc64el (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:ppc64el (1.18.3-5) ... Setting up libpcre2-posix2:ppc64el (10.36-2) ... Setting up libxt6:ppc64el (1:1.2.0-1) ... Setting up libmount1:ppc64el (2.36.1-7) ... Setting up libxss1:ppc64el (1:1.2.3-1) ... Setting up libfontconfig1:ppc64el (2.13.1-4.2) ... Setting up libtirpc3:ppc64el (1.3.1-1) ... Setting up libxft2:ppc64el (2.3.2-2) ... Setting up libglib2.0-0:ppc64el (2.66.8-1) ... /var/lib/dpkg/info/libglib2.0-0:ppc64el.postinst: 62: /usr/lib/powerpc64le-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0:ppc64el.postinst: 65: /usr/lib/powerpc64le-linux-gnu/glib-2.0/gio-querymodules: Exec format error Setting up libtk8.6:ppc64el (8.6.11-2) ... Setting up libldap-2.4-2:ppc64el (2.4.57+dfsg-3) ... Setting up libcurl3-gnutls:ppc64el (7.74.0-1.2) ... Setting up libcurl4-gnutls-dev:ppc64el (7.74.0-1.2) ... Setting up libcairo2:ppc64el (1.16.0-5) ... Setting up libtirpc-dev:ppc64el (1.3.1-1) ... Setting up libnsl2:ppc64el (1.3.0-2) ... Setting up libcurl4:ppc64el (7.74.0-1.2) ... Setting up libharfbuzz0b:ppc64el (2.7.4-1) ... Setting up libhts3:ppc64el (1.11-4) ... Setting up libpango-1.0-0:ppc64el (1.46.2-3) ... Setting up libnsl-dev:ppc64el (1.3.0-2) ... Setting up libc6-dev:ppc64el (2.31-12) ... Setting up libpangoft2-1.0-0:ppc64el (1.46.2-3) ... Setting up libpangocairo-1.0-0:ppc64el (1.46.2-3) ... Setting up libbz2-dev:ppc64el (1.0.8-4) ... Setting up libstdc++-9-dev:ppc64el (9.3.0-22) ... Setting up libpcre2-dev:ppc64el (10.36-2) ... Setting up r-base-core:ppc64el (4.0.4-1) ... Creating config file /etc/R/Renviron with new version Setting up zlib1g-dev:ppc64el (1:1.2.11.dfsg-2) ... Setting up libhts-dev:ppc64el (1.11-4) ... Setting up sbuild-build-depends-main-dummy:ppc64el (0.invalid.0) ... Processing triggers for libc-bin (2.31-12) ... Processing triggers for ca-certificates (20210119) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (ppc64el included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-16-amd64 #1 SMP Debian 4.19.181-1 (2021-03-19) amd64 (x86_64) Toolchain package versions: binutils_2.35.2-2 dpkg-dev_1.20.9 g++-10_10.2.1-6 gcc-10_10.2.1-6 libc6-dev_2.31-12 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-ppc64el-cross_10.2.1-6cross1 libstdc++-9-dev_9.3.0-22 libstdc++6_10.2.1-6 libstdc++6-ppc64el-cross_10.2.1-6cross1 linux-libc-dev_5.10.28-1 Package versions: adduser_3.118 apt_2.2.3 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_11.1 base-passwd_3.5.50 bash_5.1-3 binutils_2.35.2-2 binutils-common_2.35.2-2 binutils-powerpc64le-linux-gnu_2.35.2-2 binutils-x86-64-linux-gnu_2.35.2-2 bsdextrautils_2.36.1-7 bsdutils_1:2.36.1-7 build-essential_12.9 bzip2_1.0.8-4 ca-certificates_20210119 coreutils_8.32-4+b1 cpp_4:10.2.1-1 cpp-10_10.2.1-6 cpp-10-powerpc64le-linux-gnu_10.2.1-6cross1 cpp-8_8.4.0-7 cpp-powerpc64le-linux-gnu_4:10.2.1-1 cross-config_2.6.18+nmu1 crossbuild-essential-ppc64el_12.9 dash_0.5.11+git20210120+802ebd4-1 debconf_1.5.76 debhelper_13.3.4 debian-archive-keyring_2021.1.1 debianutils_4.11.2 dh-autoreconf_20 dh-strip-nondeterminism_1.12.0-1 diffutils_1:3.7-5 dpkg_1.20.9 dpkg-cross_2.6.18+nmu1 dpkg-dev_1.20.9 dwz_0.14-1 e2fsprogs_1.46.2-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-7 file_1:5.39-3 findutils_4.8.0-1 fontconfig_2.13.1-4.2 fontconfig-config_2.13.1-4.2 fonts-dejavu-core_2.37-2 g++_4:10.2.1-1 g++-10_10.2.1-6 g++-10-powerpc64le-linux-gnu_10.2.1-6cross1 g++-powerpc64le-linux-gnu_4:10.2.1-1 gcc_4:10.2.1-1 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: vt Binary: vt, vt-examples Architecture: any all Version: 0.57721+ds-3 Maintainer: Debian Med Packaging Team Uploaders: Antoni Villalonga Homepage: https://genome.sph.umich.edu/wiki/Vt Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/vt Vcs-Git: https://salsa.debian.org/med-team/vt.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, liblzma-dev, libcurl4-gnutls-dev, libssl-dev, libdeflate-dev, libhts-dev, libpcre2-dev, libsvm-dev, libtclap-dev, r-mathlib, r-base-core Package-List: vt deb science optional arch=any vt-examples deb science optional arch=all Checksums-Sha1: 8d1f794a59a8497084272acc1d6d6d8e5557c961 18574416 vt_0.57721+ds.orig.tar.xz 883ef66dd524310822a2ca0b1e9355515edb7f69 8092 vt_0.57721+ds-3.debian.tar.xz Checksums-Sha256: ce6e49949e5a61cd8e06ebac2dea1db94e2df78881350aba1cd178a1e4f73865 18574416 vt_0.57721+ds.orig.tar.xz 52295d9de36ef140fd0959a1220b85b7acd4e5c34e69a3b65abe56f9a2a3a95a 8092 vt_0.57721+ds-3.debian.tar.xz Files: d431231e862dc0adaa30457001f064f0 18574416 vt_0.57721+ds.orig.tar.xz 2ffd195b13c6e4b77b0d6673787fe57d 8092 vt_0.57721+ds-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+qvC4RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGmlRAAg/60CIJgKD2VWa5Vm0ZhR+dED4ZPr2B6 Q0Npp9RQUGwGWVukhU5u5FBGMbV81gCHbj9aegPYNKAaf4c+gwV4yrz7/WPTViKA A5315jD7mtlW9RPcykbf5Lur9FprAyAQFKcx1xqNbKGRRPTjIPJJaItvl+5mHZPf kcVC980xikw5uKDp5PWDydafvfktB9QGRAHMgVNFVBLtHIptntmFYQglKCNEM2e/ efEWXloaY+P9earGLqaDJATR2yUWiAkYQn+SJuJqzWcjT7W79OHaYWcV24QpcY1P l/gLlTDFuAH/shq3Oz1DEohpcwpzMdKQEcfBHNAevF6sxt5axmyINMv9H+JulpXO BKHUQW0Foog8LCnCWzYfa589j9a3I4nlpm83xlcDKsBlzNjFoCSNM4ymDH1uQMT8 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fix-spelling dpkg-source: info: applying test-fail-on-error dpkg-source: info: applying 0001-updated-faidx_fetch_uc_seq.patch dpkg-source: info: applying 0002-hts-1.11.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.ppc64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-e9f3336e-5585-425d-99f1-f3460ee977ad SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -appc64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package vt dpkg-buildpackage: info: source version 0.57721+ds-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Antoni Villalonga dpkg-architecture: warning: specified GNU system type powerpc64le-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture ppc64el debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -rf vt ahmm.o align.o allele.o annotate_1000g.o annotate_dbsnp_rsid.o annotate_indels.o annotate_indels2.o annotate_regions.o annotate_variants.o annotate_vntrs.o augmented_bam_record.o bcf_genotyping_buffered_reader.o bcf_single_genotyping_buffered_reader.o bam_ordered_reader.o bcf_ordered_reader.o bcf_ordered_writer.o bcf_synced_reader.o bed.o candidate_motif_picker.o candidate_region_extractor.o cat.o chmm.o complex_genotyping_record.o compute_concordance.o compute_features.o compute_features2.o compute_rl_dist.o config.o consolidate_multiallelics.o consolidate_vntrs.o consolidate.o construct_probes.o decompose.o decompose2.o decompose_blocksub.o discover.o duplicate.o estimate.o estimator.o extract_vntrs.o filter.o filter_overlap.o flank_detector.o fuzzy_aligner.o fuzzy_partition.o gencode.o genome_interval.o genotype.o genotyping_record.o ghmm.o hts_utils.o hfilter.o indel_annotator.o indel_genotyping_record.o index.o info2tab.o interval_tree.o interval.o lfhmm.o lhmm.o lhmm1.o liftover.o log_tool.o merge.o merge_candidate_variants.o merge_genotypes.o milk_filter.o motif_tree.o motif_map.o multi_partition.o multiallelics_consolidator.o needle.o normalize.o nuclear_pedigree.o ordered_bcf_overlap_matcher.o ordered_region_overlap_matcher.o partition.o paste.o paste_and_compute_features_sequential.o paste_genotypes.o pedigree.o peek.o pileup.o pregex.o profile_afs.o profile_chm1.o profile_chrom.o profile_fic_hwe.o profile_hwe.o profile_indels.o profile_len.o profile_mendelian.o profile_na12878.o profile_snps.o profile_vntrs.o program.o read_filter.o reference_sequence.o rfhmm.o rfhmm_x.o rminfo.o seq.o set_ref.o snp_genotyping_record.o sort.o subset.o sv_tree.o svm_train.o svm_predict.o tbx_ordered_reader.o test.o trio.o union_variants.o uniq.o utils.o validate.o variant.o variant_manip.o variant_filter.o view.o vntr.o vntr_annotator.o vntr_consolidator.o vntr_extractor.o vntr_genotyping_record.o vntr_tree.o vntrize.o wdp_ahmm.o main.o make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=powerpc64le-linux-gnu-pkg-config CXX=powerpc64le-linux-gnu-g\+\+ CC=powerpc64le-linux-gnu-gcc make[1]: Entering directory '/<>' powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o ahmm.o -c ahmm.cpp ahmm.cpp: In member function ‘void AHMM::collect_statistics(int32_t, int32_t, int32_t)’: ahmm.cpp:687:35: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 687 | rflank_start[MODEL] = NAN; | ^~~ ahmm.cpp:688:34: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 688 | rflank_start[READ] = NAN; | ^~~ ahmm.cpp:689:33: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+Inff’ to ‘2147483647’ [-Woverflow] 689 | rflank_end[MODEL] = INFINITY; | ^~~~~~~~ ahmm.cpp:690:32: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+Inff’ to ‘2147483647’ [-Woverflow] 690 | rflank_end[READ] = INFINITY; | ^~~~~~~~ ahmm.cpp: In member function ‘void AHMM::clear_statistics()’: ahmm.cpp:737:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 737 | lflank_start[MODEL] = NAN; | ^~~ ahmm.cpp:738:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 738 | lflank_start[READ] = NAN; | ^~~ ahmm.cpp:739:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 739 | lflank_end[MODEL] = NAN; | ^~~ ahmm.cpp:740:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 740 | lflank_end[READ] = NAN; | ^~~ ahmm.cpp:741:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 741 | motif_start[MODEL] = NAN; | ^~~ ahmm.cpp:742:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 742 | motif_start[READ] = NAN; | ^~~ ahmm.cpp:743:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 743 | motif_end[MODEL] = NAN; | ^~~ ahmm.cpp:744:23: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 744 | motif_end[READ] = NAN; | ^~~ ahmm.cpp:745:19: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 745 | motif_count = NAN; | ^~~ ahmm.cpp:746:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 746 | exact_motif_count = NAN; | ^~~ ahmm.cpp:747:15: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 747 | motif_m = NAN; | ^~~ ahmm.cpp:748:17: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 748 | motif_xid = NAN; | ^~~ ahmm.cpp:750:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 750 | rflank_start[MODEL] = NAN; | ^~~ ahmm.cpp:751:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 751 | rflank_start[READ] = NAN; | ^~~ ahmm.cpp:752:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 752 | rflank_end[MODEL] = NAN; | ^~~ ahmm.cpp:753:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 753 | rflank_end[READ] = NAN; | ^~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o align.o -c align.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o allele.o -c allele.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_1000g.o -c annotate_1000g.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_dbsnp_rsid.o -c annotate_dbsnp_rsid.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_indels.o -c annotate_indels.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_indels2.o -c annotate_indels2.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_regions.o -c annotate_regions.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_variants.o -c annotate_variants.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_vntrs.o -c annotate_vntrs.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o augmented_bam_record.o -c augmented_bam_record.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bcf_genotyping_buffered_reader.o -c bcf_genotyping_buffered_reader.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bcf_single_genotyping_buffered_reader.o -c bcf_single_genotyping_buffered_reader.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bam_ordered_reader.o -c bam_ordered_reader.cpp bam_ordered_reader.cpp: In constructor ‘BAMOrderedReader::BAMOrderedReader(std::string, std::vector&, std::string)’: bam_ordered_reader.cpp:52:1: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 52 | BAMOrderedReader::BAMOrderedReader(std::string file_name, std::vector& intervals, std::string ref_fasta_file) | ^~~~~~~~~~~~~~~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bcf_ordered_reader.o -c bcf_ordered_reader.cpp bcf_ordered_reader.cpp: In constructor ‘BCFOrderedReader::BCFOrderedReader(std::string, std::vector&)’: bcf_ordered_reader.cpp:45:1: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 45 | BCFOrderedReader::BCFOrderedReader(std::string file_name, std::vector& intervals) | ^~~~~~~~~~~~~~~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bcf_ordered_writer.o -c bcf_ordered_writer.cpp bcf_ordered_writer.cpp: In member function ‘void BCFOrderedWriter::write(bcf1_t*)’: bcf_ordered_writer.cpp:162:114: warning: format ‘%d’ expects argument of type ‘int’, but argument 8 has type ‘hts_pos_t’ {aka ‘long int’} [-Wformat=] 162 | fprintf(stderr, "[%s:%d %s] Might not be sorted for window size %d at current record %s:%d < %d (%d [last record] - %d), please increase window size to at least %d.\n", | ~^ | | | int | %ld bcf_ordered_writer.cpp:162:123: warning: format ‘%d’ expects argument of type ‘int’, but argument 10 has type ‘hts_pos_t’ {aka ‘long int’} [-Wformat=] 162 | fprintf(stderr, "[%s:%d %s] Might not be sorted for window size %d at current record %s:%d < %d (%d [last record] - %d), please increase window size to at least %d.\n", | ~^ | | | int | %ld bcf_ordered_writer.cpp:162:187: warning: format ‘%d’ expects argument of type ‘int’, but argument 12 has type ‘hts_pos_t’ {aka ‘long int’} [-Wformat=] 162 | fprintf(stderr, "[%s:%d %s] Might not be sorted for window size %d at current record %s:%d < %d (%d [last record] - %d), please increase window size to at least %d.\n", | ~^ | | | int | %ld bcf_ordered_writer.cpp: In member function ‘void BCFOrderedWriter::write_hdr()’: bcf_ordered_writer.cpp:129:18: warning: ignoring return value of ‘int bcf_hdr_write(htsFile*, bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | bcf_hdr_write(file, hdr); | ~~~~~~~~~~~~~^~~~~~~~~~~ bcf_ordered_writer.cpp: In member function ‘void BCFOrderedWriter::write(bcf1_t*)’: bcf_ordered_writer.cpp:195:18: warning: ignoring return value of ‘int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 195 | bcf_write(file, hdr, v); | ~~~~~~~~~^~~~~~~~~~~~~~ bcf_ordered_writer.cpp: In member function ‘void BCFOrderedWriter::flush(bool)’: bcf_ordered_writer.cpp:245:22: warning: ignoring return value of ‘int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 245 | bcf_write(file, hdr, buffer.back()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ bcf_ordered_writer.cpp:261:30: warning: ignoring return value of ‘int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 261 | bcf_write(file, hdr, buffer.back()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bcf_synced_reader.o -c bcf_synced_reader.cpp In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:72, from utils.h:33, from hts_utils.h:37, from bcf_synced_reader.h:27, from bcf_synced_reader.cpp:24: /usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {GenomeInterval}; _Tp = GenomeInterval; _Alloc = std::allocator]’: /usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc:426:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bed.o -c bed.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o candidate_motif_picker.o -c candidate_motif_picker.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o candidate_region_extractor.o -c candidate_region_extractor.cpp candidate_region_extractor.cpp: In member function ‘void CandidateRegionExtractor::pick_candidate_region(Variant&, int32_t, int32_t)’: candidate_region_extractor.cpp:66:21: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 66 | vntr.rl = vntr.end1-vntr.beg1+1; | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o cat.o -c cat.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o chmm.o -c chmm.cpp chmm.cpp: In member function ‘void CHMM::clear_statistics()’: chmm.cpp:1106:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 1106 | lflank_start[MODEL] = NAN; | ^~~ chmm.cpp:1107:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 1107 | lflank_start[READ] = NAN; | ^~~ chmm.cpp:1108:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 1108 | lflank_end[MODEL] = NAN; | ^~~ chmm.cpp:1109:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 1109 | lflank_end[READ] = NAN; | ^~~ chmm.cpp:1110:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 1110 | motif_start[MODEL] = NAN; | ^~~ chmm.cpp:1111:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 1111 | motif_start[READ] = NAN; | ^~~ chmm.cpp:1112:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 1112 | motif_end[MODEL] = NAN; | ^~~ chmm.cpp:1113:23: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 1113 | motif_end[READ] = NAN; | ^~~ chmm.cpp:1114:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 1114 | rflank_start[MODEL] = NAN; | ^~~ chmm.cpp:1115:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 1115 | rflank_start[READ] = NAN; | ^~~ chmm.cpp:1116:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 1116 | rflank_end[MODEL] = NAN; | ^~~ chmm.cpp:1117:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 1117 | rflank_end[READ] = NAN; | ^~~ chmm.cpp:1118:19: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 1118 | motif_count = NAN; | ^~~ chmm.cpp:1119:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 1119 | exact_motif_count = NAN; | ^~~ chmm.cpp:1120:15: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 1120 | motif_m = NAN; | ^~~ chmm.cpp:1121:17: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 1121 | motif_xid = NAN; | ^~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o complex_genotyping_record.o -c complex_genotyping_record.cpp complex_genotyping_record.cpp: In constructor ‘ComplexGenotypingRecord::ComplexGenotypingRecord(bcf_hdr_t*, bcf1_t*, int32_t, int32_t)’: complex_genotyping_record.cpp:53:14: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 53 | beg1 = bcf_get_pos1(v); powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o compute_concordance.o -c compute_concordance.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o compute_features.o -c compute_features.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o compute_features2.o -c compute_features2.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o compute_rl_dist.o -c compute_rl_dist.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o config.o -c config.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o consolidate_multiallelics.o -c consolidate_multiallelics.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o consolidate_vntrs.o -c consolidate_vntrs.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o consolidate.o -c consolidate.cpp consolidate.cpp: In function ‘void consolidate(int, char**)’: consolidate.cpp:877:6: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 877 | void consolidate(int argc, char ** argv) | ^~~~~~~~~~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o construct_probes.o -c construct_probes.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o decompose.o -c decompose.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o decompose2.o -c decompose2.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o decompose_blocksub.o -c decompose_blocksub.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o discover.o -c discover.cpp In file included from bcf_ordered_reader.h:27, from program.h:32, from discover.h:27, from discover.cpp:24: discover.cpp: In member function ‘bool {anonymous}::Igor::filter_read(bam1_t*)’: hts_utils.h:124:40: warning: narrowing conversion of ‘(s->bam1_t::core.bam1_core_t::pos + 1)’ from ‘hts_pos_t’ {aka ‘long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing] 124 | #define bam_get_pos1(s) ((s)->core.pos + 1) | ~~~~~~~~~~~~~~~^~~~ discover.cpp:355:45: note: in expansion of macro ‘bam_get_pos1’ 355 | kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1}; | ^~~~~~~~~~~~ discover.cpp:355:95: warning: narrowing conversion of ‘(((s->bam1_t::core.bam1_core_t::pos + 1) + ((hts_pos_t)s->bam1_t::core.bam1_core_t::l_qseq)) - 1)’ from ‘hts_pos_t’ {aka ‘long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing] 355 | kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1}; powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o duplicate.o -c duplicate.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o estimate.o -c estimate.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o estimator.o -c estimator.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o extract_vntrs.o -c extract_vntrs.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o filter.o -c filter.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o filter_overlap.o -c filter_overlap.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o flank_detector.o -c flank_detector.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o fuzzy_aligner.o -c fuzzy_aligner.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o fuzzy_partition.o -c fuzzy_partition.cpp fuzzy_partition.cpp: In member function ‘void {anonymous}::Igor::initialize()’: fuzzy_partition.cpp:153:21: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | bcf_hdr_sync(odr->hdr); | ~~~~~~~~~~~~^~~~~~~~~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o gencode.o -c gencode.cpp In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:72, from gencode.h:32, from gencode.cpp:24: /usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const GenomeInterval&}; _Tp = GenomeInterval; _Alloc = std::allocator]’: /usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc:426:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o genome_interval.o -c genome_interval.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o genotype.o -c genotype.cpp In file included from bam_ordered_reader.h:27, from genotype.h:27, from genotype.cpp:24: genotype.cpp: In member function ‘bool {anonymous}::Igor::filter_read(bam1_t*)’: hts_utils.h:124:40: warning: narrowing conversion of ‘(s->bam1_t::core.bam1_core_t::pos + 1)’ from ‘hts_pos_t’ {aka ‘long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing] 124 | #define bam_get_pos1(s) ((s)->core.pos + 1) | ~~~~~~~~~~~~~~~^~~~ genotype.cpp:304:45: note: in expansion of macro ‘bam_get_pos1’ 304 | kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1}; | ^~~~~~~~~~~~ genotype.cpp:304:95: warning: narrowing conversion of ‘(((s->bam1_t::core.bam1_core_t::pos + 1) + ((hts_pos_t)s->bam1_t::core.bam1_core_t::l_qseq)) - 1)’ from ‘hts_pos_t’ {aka ‘long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing] 304 | kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1}; powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o genotyping_record.o -c genotyping_record.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o ghmm.o -c ghmm.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o hts_utils.o -c hts_utils.cpp hts_utils.cpp: In function ‘void bcf_hdr_print(bcf_hdr_t*)’: hts_utils.cpp:406:33: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 406 | if ( h->dirty ) bcf_hdr_sync(h); | ~~~~~~~~~~~~^~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o hfilter.o -c hfilter.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o indel_annotator.o -c indel_annotator.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o indel_genotyping_record.o -c indel_genotyping_record.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o index.o -c index.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o info2tab.o -c info2tab.cpp info2tab.cpp: In member function ‘void {anonymous}::Igor::info2tab()’: info2tab.cpp:278:32: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘hts_pos_t’ {aka ‘long int’} [-Wformat=] 278 | fprintf(out, "%s\t%d", bcf_get_chrom(h, v), bcf_get_pos1(v)); | ~^ | | | int | %ld powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o interval_tree.o -c interval_tree.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o interval.o -c interval.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o lfhmm.o -c lfhmm.cpp lfhmm.cpp: In member function ‘void LFHMM::collect_statistics(int32_t, int32_t, int32_t)’: lfhmm.cpp:761:33: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 761 | rflank_end[MODEL] = NAN; | ^~~ lfhmm.cpp: In member function ‘void LFHMM::clear_statistics()’: lfhmm.cpp:868:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 868 | lflank_start[MODEL] = NAN; | ^~~ lfhmm.cpp:869:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 869 | lflank_start[READ] = NAN; | ^~~ lfhmm.cpp:870:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 870 | lflank_end[MODEL] = NAN; | ^~~ lfhmm.cpp:871:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 871 | lflank_end[READ] = NAN; | ^~~ lfhmm.cpp:872:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 872 | motif_start[MODEL] = NAN; | ^~~ lfhmm.cpp:873:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 873 | motif_start[READ] = NAN; | ^~~ lfhmm.cpp:874:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 874 | motif_end[MODEL] = NAN; | ^~~ lfhmm.cpp:875:23: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 875 | motif_end[READ] = NAN; | ^~~ lfhmm.cpp:876:19: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 876 | motif_count = NAN; | ^~~ lfhmm.cpp:877:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 877 | exact_motif_count = NAN; | ^~~ lfhmm.cpp:878:15: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 878 | motif_m = NAN; | ^~~ lfhmm.cpp:879:17: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 879 | motif_xid = NAN; | ^~~ lfhmm.cpp:881:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 881 | rflank_start[MODEL] = NAN; | ^~~ lfhmm.cpp:882:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 882 | rflank_start[READ] = NAN; | ^~~ lfhmm.cpp:883:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 883 | rflank_end[MODEL] = NAN; | ^~~ lfhmm.cpp:884:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 884 | rflank_end[READ] = NAN; | ^~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o lhmm.o -c lhmm.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o lhmm1.o -c lhmm1.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o liftover.o -c liftover.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o log_tool.o -c log_tool.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o merge.o -c merge.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o merge_candidate_variants.o -c merge_candidate_variants.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o merge_genotypes.o -c merge_genotypes.cpp merge_genotypes.cpp: In member function ‘void {anonymous}::Igor::initialize()’: merge_genotypes.cpp:215:21: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | bcf_hdr_sync(odw->hdr); | ~~~~~~~~~~~~^~~~~~~~~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o milk_filter.o -c milk_filter.cpp milk_filter.cpp: In member function ‘void {anonymous}::Igor::milk_filter()’: milk_filter.cpp:456:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘hts_pos_t’ {aka ‘long int’} [-Wformat=] 456 | fprintf(stderr,"Processing %d variants at %s:%d\n", nread + 1, bcf_seqname(odw->hdr,nv), nv->pos); | ~^ ~~~~~~~ | | | | int hts_pos_t {aka long int} | %ld powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o motif_tree.o -c motif_tree.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o motif_map.o -c motif_map.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o multi_partition.o -c multi_partition.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o multiallelics_consolidator.o -c multiallelics_consolidator.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o needle.o -c needle.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o normalize.o -c normalize.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o nuclear_pedigree.o -c nuclear_pedigree.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o ordered_bcf_overlap_matcher.o -c ordered_bcf_overlap_matcher.cpp ordered_bcf_overlap_matcher.cpp: In constructor ‘OrderedBCFOverlapMatcher::OrderedBCFOverlapMatcher(std::string&, std::vector&)’: ordered_bcf_overlap_matcher.cpp:34:17: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 34 | bcf_hdr_sync(odr->hdr); | ~~~~~~~~~~~~^~~~~~~~~~ ordered_bcf_overlap_matcher.cpp: In constructor ‘OrderedBCFOverlapMatcher::OrderedBCFOverlapMatcher(std::string&, std::vector&, std::string)’: ordered_bcf_overlap_matcher.cpp:52:17: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 52 | bcf_hdr_sync(odr->hdr); | ~~~~~~~~~~~~^~~~~~~~~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o ordered_region_overlap_matcher.o -c ordered_region_overlap_matcher.cpp In file included from ordered_region_overlap_matcher.h:30, from ordered_region_overlap_matcher.cpp:24: bed.h: In member function ‘bool OrderedRegionOverlapMatcher::overlaps_with(std::string&, int32_t, int32_t)’: bed.h:31:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 31 | class BEDRecord | ^~~~~~~~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o partition.o -c partition.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o paste.o -c paste.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o paste_and_compute_features_sequential.o -c paste_and_compute_features_sequential.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o paste_genotypes.o -c paste_genotypes.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o pedigree.o -c pedigree.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o peek.o -c peek.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o pileup.o -c pileup.cpp In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:72, from utils.h:33, from pileup.h:27, from pileup.cpp:24: /usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_default_append(std::vector<_Tp, _Alloc>::size_type) [with _Tp = PileupPosition; _Alloc = std::allocator]’: /usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc:611:5: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 611 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o pregex.o -c pregex.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_afs.o -c profile_afs.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_chm1.o -c profile_chm1.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_chrom.o -c profile_chrom.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_fic_hwe.o -c profile_fic_hwe.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_hwe.o -c profile_hwe.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_indels.o -c profile_indels.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_len.o -c profile_len.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_mendelian.o -c profile_mendelian.cpp profile_mendelian.cpp: In member function ‘void {anonymous}::Igor::initialize()’: profile_mendelian.cpp:191:25: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 191 | bcf_hdr_sync(odw->hdr); | ~~~~~~~~~~~~^~~~~~~~~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_na12878.o -c profile_na12878.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_snps.o -c profile_snps.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_vntrs.o -c profile_vntrs.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o program.o -c program.cpp In file included from /usr/powerpc64le-linux-gnu/include/c++/10/vector:72, from /usr/include/tclap/SwitchArg.h:30, from /usr/include/tclap/CmdLine.h:27, from program.h:30, from program.cpp:24: /usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(std::vector<_Tp, _Alloc>::iterator, _Args&& ...) [with _Args = {const GenomeInterval&}; _Tp = GenomeInterval; _Alloc = std::allocator]’: /usr/powerpc64le-linux-gnu/include/c++/10/bits/vector.tcc:426:7: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 426 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o read_filter.o -c read_filter.cpp In file included from read_filter.h:30, from read_filter.cpp:24: read_filter.cpp: In member function ‘bool ReadFilter::filter_read(bam_hdr_t*, bam1_t*)’: hts_utils.h:124:40: warning: narrowing conversion of ‘(s->bam1_t::core.bam1_core_t::pos + 1)’ from ‘hts_pos_t’ {aka ‘long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing] 124 | #define bam_get_pos1(s) ((s)->core.pos + 1) | ~~~~~~~~~~~~~~~^~~~ read_filter.cpp:95:41: note: in expansion of macro ‘bam_get_pos1’ 95 | kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1}; | ^~~~~~~~~~~~ read_filter.cpp:95:91: warning: narrowing conversion of ‘(((s->bam1_t::core.bam1_core_t::pos + 1) + ((hts_pos_t)s->bam1_t::core.bam1_core_t::l_qseq)) - 1)’ from ‘hts_pos_t’ {aka ‘long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing] 95 | kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1}; powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o reference_sequence.o -c reference_sequence.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o rfhmm.o -c rfhmm.cpp rfhmm.cpp: In member function ‘void RFHMM::clear_statistics()’: rfhmm.cpp:833:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 833 | lflank_start[MODEL] = NAN; | ^~~ rfhmm.cpp:834:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 834 | lflank_start[READ] = NAN; | ^~~ rfhmm.cpp:835:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 835 | lflank_end[MODEL] = NAN; | ^~~ rfhmm.cpp:836:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 836 | lflank_end[READ] = NAN; | ^~~ rfhmm.cpp:837:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 837 | motif_start[MODEL] = NAN; | ^~~ rfhmm.cpp:838:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 838 | motif_start[READ] = NAN; | ^~~ rfhmm.cpp:839:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 839 | motif_end[MODEL] = NAN; | ^~~ rfhmm.cpp:840:23: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 840 | motif_end[READ] = NAN; | ^~~ rfhmm.cpp:841:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 841 | rflank_start[MODEL] = NAN; | ^~~ rfhmm.cpp:842:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 842 | rflank_start[READ] = NAN; | ^~~ rfhmm.cpp:843:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 843 | rflank_end[MODEL] = NAN; | ^~~ rfhmm.cpp:844:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 844 | rflank_end[READ] = NAN; | ^~~ rfhmm.cpp:845:19: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 845 | motif_count = NAN; | ^~~ rfhmm.cpp:846:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 846 | exact_motif_count = NAN; | ^~~ rfhmm.cpp:847:15: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 847 | motif_m = NAN; | ^~~ rfhmm.cpp:848:17: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 848 | motif_xid = NAN; | ^~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o rfhmm_x.o -c rfhmm_x.cpp rfhmm_x.cpp: In member function ‘void RFHMM_X::clear_statistics()’: rfhmm_x.cpp:928:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 928 | lflank_start[MODEL] = NAN; | ^~~ rfhmm_x.cpp:929:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 929 | lflank_start[READ] = NAN; | ^~~ rfhmm_x.cpp:930:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 930 | lflank_end[MODEL] = NAN; | ^~~ rfhmm_x.cpp:931:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 931 | lflank_end[READ] = NAN; | ^~~ rfhmm_x.cpp:932:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 932 | motif_start[MODEL] = NAN; | ^~~ rfhmm_x.cpp:933:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 933 | motif_start[READ] = NAN; | ^~~ rfhmm_x.cpp:934:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 934 | motif_end[MODEL] = NAN; | ^~~ rfhmm_x.cpp:935:23: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 935 | motif_end[READ] = NAN; | ^~~ rfhmm_x.cpp:936:27: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 936 | rflank_start[MODEL] = NAN; | ^~~ rfhmm_x.cpp:937:26: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 937 | rflank_start[READ] = NAN; | ^~~ rfhmm_x.cpp:938:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 938 | rflank_end[MODEL] = NAN; | ^~~ rfhmm_x.cpp:939:24: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 939 | rflank_end[READ] = NAN; | ^~~ rfhmm_x.cpp:940:19: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 940 | motif_count = NAN; | ^~~ rfhmm_x.cpp:941:25: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 941 | exact_motif_count = NAN; | ^~~ rfhmm_x.cpp:942:15: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 942 | motif_m = NAN; | ^~~ rfhmm_x.cpp:943:17: warning: overflow in conversion from ‘float’ to ‘int32_t’ {aka ‘int’} changes value from ‘+QNaNf’ to ‘0’ [-Woverflow] 943 | motif_xid = NAN; | ^~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o rminfo.o -c rminfo.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o seq.o -c seq.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o set_ref.o -c set_ref.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o snp_genotyping_record.o -c snp_genotyping_record.cpp snp_genotyping_record.cpp: In constructor ‘SNPGenotypingRecord::SNPGenotypingRecord(bcf_hdr_t*, bcf1_t*, int32_t, int32_t, Estimator*)’: snp_genotyping_record.cpp:59:14: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 59 | beg1 = bcf_get_pos1(v); powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o sort.o -c sort.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o subset.o -c subset.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o sv_tree.o -c sv_tree.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o svm_train.o -c svm_train.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o svm_predict.o -c svm_predict.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o tbx_ordered_reader.o -c tbx_ordered_reader.cpp tbx_ordered_reader.cpp: In constructor ‘TBXOrderedReader::TBXOrderedReader(std::string&, std::vector&, bool)’: tbx_ordered_reader.cpp:67:1: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 67 | TBXOrderedReader::TBXOrderedReader(std::string& hts_file, std::vector& intervals, bool require_index) | ^~~~~~~~~~~~~~~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o test.o -c test.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o trio.o -c trio.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o union_variants.o -c union_variants.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o uniq.o -c uniq.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o utils.o -c utils.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o validate.o -c validate.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o variant.o -c variant.cpp variant.cpp: In member function ‘void Variant::update_bcf_with_vntr_info(bcf_hdr_t*, bcf1_t*)’: variant.cpp:610:70: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 610 | int32_t ru_count[2] = {vntr.fuzzy_no_perfect_ru, vntr.fuzzy_no_ru}; | ^ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o variant_manip.o -c variant_manip.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o variant_filter.o -c variant_filter.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o view.o -c view.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr.o -c vntr.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr_annotator.o -c vntr_annotator.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr_consolidator.o -c vntr_consolidator.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr_extractor.o -c vntr_extractor.cpp vntr_extractor.cpp: In member function ‘void VNTRExtractor::copy_exact_vntr_features_to_final_vntr_features(VNTR&)’: vntr_extractor.cpp:315:6: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 315 | void VNTRExtractor::copy_exact_vntr_features_to_final_vntr_features(VNTR& vntr) | ^~~~~~~~~~~~~ powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr_genotyping_record.o -c vntr_genotyping_record.cpp vntr_genotyping_record.cpp: In constructor ‘VNTRGenotypingRecord::VNTRGenotypingRecord(bcf_hdr_t*, bcf1_t*, int32_t, int32_t, int32_t, Estimator*)’: vntr_genotyping_record.cpp:52:10: note: the layout of aggregates containing vectors with 8-byte alignment has changed in GCC 5 52 | beg1 = bcf_get_pos1(v); powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr_tree.o -c vntr_tree.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntrize.o -c vntrize.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o wdp_ahmm.o -c wdp_ahmm.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o main.o -c main.cpp powerpc64le-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vt ahmm.o align.o allele.o annotate_1000g.o annotate_dbsnp_rsid.o annotate_indels.o annotate_indels2.o annotate_regions.o annotate_variants.o annotate_vntrs.o augmented_bam_record.o bcf_genotyping_buffered_reader.o bcf_single_genotyping_buffered_reader.o bam_ordered_reader.o bcf_ordered_reader.o bcf_ordered_writer.o bcf_synced_reader.o bed.o candidate_motif_picker.o candidate_region_extractor.o cat.o chmm.o complex_genotyping_record.o compute_concordance.o compute_features.o compute_features2.o compute_rl_dist.o config.o consolidate_multiallelics.o consolidate_vntrs.o consolidate.o construct_probes.o decompose.o decompose2.o decompose_blocksub.o discover.o duplicate.o estimate.o estimator.o extract_vntrs.o filter.o filter_overlap.o flank_detector.o fuzzy_aligner.o fuzzy_partition.o gencode.o genome_interval.o genotype.o genotyping_record.o ghmm.o hts_utils.o hfilter.o indel_annotator.o indel_genotyping_record.o index.o info2tab.o interval_tree.o interval.o lfhmm.o lhmm.o lhmm1.o liftover.o log_tool.o merge.o merge_candidate_variants.o merge_genotypes.o milk_filter.o motif_tree.o motif_map.o multi_partition.o multiallelics_consolidator.o needle.o normalize.o nuclear_pedigree.o ordered_bcf_overlap_matcher.o ordered_region_overlap_matcher.o partition.o paste.o paste_and_compute_features_sequential.o paste_genotypes.o pedigree.o peek.o pileup.o pregex.o profile_afs.o profile_chm1.o profile_chrom.o profile_fic_hwe.o profile_hwe.o profile_indels.o profile_len.o profile_mendelian.o profile_na12878.o profile_snps.o profile_vntrs.o program.o read_filter.o reference_sequence.o rfhmm.o rfhmm_x.o rminfo.o seq.o set_ref.o snp_genotyping_record.o sort.o subset.o sv_tree.o svm_train.o svm_predict.o tbx_ordered_reader.o test.o trio.o union_variants.o uniq.o utils.o validate.o variant.o variant_manip.o variant_filter.o view.o vntr.o vntr_annotator.o vntr_consolidator.o vntr_extractor.o vntr_genotyping_record.o vntr_tree.o vntrize.o wdp_ahmm.o main.o -lz -lpthread -lbz2 -llzma -lcurl -lcrypto -lhts -lpcre2-8 -lsvm -lRmath -lR make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'vt' in '../vt_0.57721+ds-3_ppc64el.deb'. dpkg-deb: building package 'vt-dbgsym' in '../vt-dbgsym_0.57721+ds-3_ppc64el.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../vt_0.57721+ds-3_ppc64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-05-19T09:52:56Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ vt_0.57721+ds-3_ppc64el.changes: -------------------------------- Format: 1.8 Date: Mon, 09 Nov 2020 09:29:40 +0100 Source: vt Binary: vt vt-dbgsym Built-For-Profiles: cross nocheck Architecture: ppc64el Version: 0.57721+ds-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Antoni Villalonga Description: vt - toolset for short variant discovery in genetic sequence data Changes: vt (0.57721+ds-3) unstable; urgency=medium . * patch 0001: Get rid of commented code * Add patch 0002-hts-1.11.patch Checksums-Sha1: 0f4f1205298eb0cf5e46e15b36e9d46653a7c843 30453948 vt-dbgsym_0.57721+ds-3_ppc64el.deb b61fa7c6556e8872279d37070894e42649d2767e 7243 vt_0.57721+ds-3_ppc64el.buildinfo 3cf0b2de810b6004d817d13bea3f5f64abc07063 710780 vt_0.57721+ds-3_ppc64el.deb Checksums-Sha256: 4c563af5f0878efe47b90683c952fca628538b432aba7af84b3c010ed5b3b43e 30453948 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30453948 vt-dbgsym_0.57721+ds-3_ppc64el.deb 3cf0b2de810b6004d817d13bea3f5f64abc07063 710780 vt_0.57721+ds-3_ppc64el.deb Checksums-Sha256: 4c563af5f0878efe47b90683c952fca628538b432aba7af84b3c010ed5b3b43e 30453948 vt-dbgsym_0.57721+ds-3_ppc64el.deb ce8d5dcc7bd155c3a3b82c98ee895f7e5f8eb6cceac66377058c61ae70b8ee93 710780 vt_0.57721+ds-3_ppc64el.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Wed, 19 May 2021 09:52:55 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-14), automake (= 1:1.16.3-2), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 11.1), base-passwd (= 3.5.50), bash (= 5.1-3), binutils (= 2.35.2-2), binutils-common (= 2.35.2-2), binutils-x86-64-linux-gnu (= 2.35.2-2), bsdextrautils (= 2.36.1-7), bsdutils (= 1:2.36.1-7), build-essential (= 12.9), bzip2 (= 1.0.8-4), ca-certificates (= 20210119), coreutils (= 8.32-4+b1), cpp (= 4:10.2.1-1), cpp-10 (= 10.2.1-6), dash (= 0.5.11+git20210120+802ebd4-1), debconf (= 1.5.76), debhelper 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libgpg-error0 (= 1.38-2), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.18.3-5), libharfbuzz0b (= 2.7.4-1), libhogweed6 (= 3.7.2-3), libhts-dev (= 1.11-4), libhts3 (= 1.11-4), libice6 (= 2:1.0.10-1), libicu67 (= 67.1-6), libidn2-0 (= 2.3.0-5), libisl23 (= 0.23-1), libitm1 (= 10.2.1-6), libjbig0 (= 2.1-3.1+b2), libjpeg62-turbo (= 1:2.0.6-4), libk5crypto3 (= 1.18.3-5), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-5), libkrb5support0 (= 1.18.3-5), liblapack3 (= 3.9.0-3), libldap-2.4-2 (= 2.4.57+dfsg-3), liblsan0 (= 10.2.1-6), liblz4-1 (= 1.9.3-2), liblzma-dev (= 5.2.5-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmd0 (= 1.0.3-3), libmount1 (= 2.36.1-7), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnettle8 (= 3.7.2-3), libnghttp2-14 (= 1.43.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.4.0-7), libpam-modules-bin (= 1.4.0-7), libpam-runtime (= 1.4.0-7), libpam0g (= 1.4.0-7), libpango-1.0-0 (= 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libtclap-dev (= 1.2.4-1), libthai-data (= 0.1.28-4), libthai0 (= 0.1.28-4), libtiff5 (= 4.2.0-1), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.1-1), libtirpc-dev (= 1.3.1-1), libtirpc3 (= 1.3.1-1), libtk8.6 (= 8.6.11-2), libtool (= 2.4.6-15), libtsan0 (= 10.2.1-6), libubsan1 (= 10.2.1-6), libuchardet0 (= 0.0.7-1), libudev1 (= 247.3-5), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-7), libwebp6 (= 0.6.1-2+b1), libx11-6 (= 2:1.7.0-2), libx11-data (= 2:1.7.0-2), libxau6 (= 1:1.0.9-1), libxcb-render0 (= 1.14-3), libxcb-shm0 (= 1.14-3), libxcb1 (= 1.14-3), libxdmcp6 (= 1:1.1.2-3), libxext6 (= 2:1.3.3-1.1), libxft2 (= 2.3.2-2), libxml2 (= 2.9.10+dfsg-6.6), libxrender1 (= 1:0.9.10-1), libxss1 (= 1:1.2.3-1), libxt6 (= 1:1.2.0-1), libzstd1 (= 1.4.8+dfsg-2.1), linux-libc-dev (= 5.10.28-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), openssl (= 1.1.1k-1), patch (= 2.7.6-7), perl (= 5.32.1-4), perl-base (= 5.32.1-4), perl-modules-5.32 (= 5.32.1-4), po-debconf (= 1.0.21+nmu1), r-base-core (= 4.0.4-1), r-mathlib (= 4.0.4-1), readline-common (= 8.1-2), sed (= 4.7-1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-7), tar (= 1.34+dfsg-1), tzdata (= 2021a-1), ucf (= 3.0043), unzip (= 6.0-26), util-linux (= 2.36.1-7), x11-common (= 1:7.7+22), xdg-utils (= 1.1.3-4.1), xz-utils (= 5.2.5-2), zip (= 3.0-12), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1604910580" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ vt-dbgsym_0.57721+ds-3_ppc64el.deb ---------------------------------- new Debian package, version 2.0. size 30453948 bytes: control archive=540 bytes. 364 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: vt-dbgsym Source: vt Version: 0.57721+ds-3 Auto-Built-Package: debug-symbols Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 31140 Depends: vt (= 0.57721+ds-3) Section: debug Priority: optional Description: debug symbols for vt Build-Ids: 5c749e05db7b528d9d6395ea62f2c77482a4b8e3 drwxr-xr-x root/root 0 2020-11-09 08:29 ./ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/lib/debug/.build-id/5c/ -rw-r--r-- root/root 31876984 2020-11-09 08:29 ./usr/lib/debug/.build-id/5c/749e05db7b528d9d6395ea62f2c77482a4b8e3.debug drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/share/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-11-09 08:29 ./usr/share/doc/vt-dbgsym -> vt vt_0.57721+ds-3_ppc64el.deb --------------------------- new Debian package, version 2.0. size 710780 bytes: control archive=916 bytes. 824 bytes, 17 lines control 301 bytes, 5 lines md5sums Package: vt Version: 0.57721+ds-3 Architecture: ppc64el Maintainer: Debian Med Packaging Team Installed-Size: 2833 Depends: libc6 (>= 2.29), libgcc-s1 (>= 3.0), libhts3 (>= 1.10), libpcre2-8-0 (>= 10.22), libstdc++6 (>= 5.2), r-base-core Section: science Priority: optional Homepage: https://genome.sph.umich.edu/wiki/Vt Description: toolset for short variant discovery in genetic sequence data vt is a variant tool set that discovers short variants from Next Generation Sequencing data. . Vt-normalize is a tool to normalize representation of genetic variants in the VCF. Variant normalization is formally defined as the consistent representation of genetic variants in an unambiguous and concise way. In vt a simple general algorithm to enforce this is implemented. drwxr-xr-x root/root 0 2020-11-09 08:29 ./ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/bin/ -rwxr-xr-x root/root 2885920 2020-11-09 08:29 ./usr/bin/vt drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/share/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/share/doc/vt/ -rw-r--r-- root/root 306 2020-11-09 08:29 ./usr/share/doc/vt/README.test -rw-r--r-- root/root 426 2020-11-09 08:29 ./usr/share/doc/vt/changelog.Debian.gz -rw-r--r-- root/root 1766 2020-11-09 08:29 ./usr/share/doc/vt/copyright drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/share/man/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/share/man/man1/ -rw-r--r-- root/root 659 2020-11-09 08:29 ./usr/share/man/man1/vt.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [603 B] Get:5 copy:/<>/apt_archive ./ Packages [690 B] Fetched 2256 B in 0s (84.3 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:ppc64el t1utils 0 upgraded, 88 newly installed, 0 to remove and 0 not upgraded. Need to get 7382 kB of archives. After this operation, 21.2 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.1-2 [168 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.4-1 [51.1 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.27-2 [547 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.27-2 [927 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.40 [72.2 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b3 [45.7 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b7 [38.1 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.26-1 [16.5 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.25-1+b1 [129 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1.1 [18.4 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1.1 [13.7 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-xs-perl amd64 0.430-2 [40.9 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b1 [25.6 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1.1 [10.8 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.110-1.1 [10.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.00-4+b1 [38.8 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1.1 [6956 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1.1 [318 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1.1 [21.3 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.6-1 [36.8 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004004-1 [59.9 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2+b1 [45.9 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.12-1+b1 [13.0 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012002-1 [351 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.08-1 [90.6 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-3 [88.5 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.104.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7382 kB in 0s (25.0 MB/s) Selecting previously unselected package libreadline8:amd64. (Reading database ... 26087 files and directories currently installed.) Preparing to unpack .../00-libreadline8_8.1-2_amd64.deb ... Unpacking libreadline8:amd64 (8.1-2) ... Selecting previously unselected package diffstat. Preparing to unpack .../01-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../02-libassuan0_2.5.4-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.4-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../03-gpgconf_2.2.27-2_amd64.deb ... Unpacking gpgconf (2.2.27-2) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../04-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package gpg. Preparing to unpack .../05-gpg_2.2.27-2_amd64.deb ... Unpacking gpg (2.2.27-2) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../06-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../07-libapt-pkg-perl_0.1.40_amd64.deb ... Unpacking libapt-pkg-perl (0.1.40) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../08-libb-hooks-op-check-perl_0.22-1+b3_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b3) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../09-libdynaloader-functions-perl_0.003-1.1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1.1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../10-libdevel-callchecker-perl_0.008-1+b2_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b2) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../11-libparams-classify-perl_0.015-1+b3_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b3) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../12-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../13-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../14-libmodule-implementation-perl_0.09-1.1_all.deb ... Unpacking libmodule-implementation-perl (0.09-1.1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../15-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../16-libvariable-magic-perl_0.62-1+b3_amd64.deb ... Unpacking libvariable-magic-perl (0.62-1+b3) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../17-libb-hooks-endofscope-perl_0.24-1.1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.24-1.1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../18-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../19-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../20-libclass-method-modifiers-perl_2.13-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.13-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../21-libclass-xsaccessor-perl_1.19-3+b7_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-3+b7) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../22-libclone-perl_0.45-1+b1_amd64.deb ... Unpacking libclone-perl (0.45-1+b1) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../23-libconfig-tiny-perl_2.26-1_all.deb ... Unpacking libconfig-tiny-perl (2.26-1) ... Selecting previously unselected package libcpanel-json-xs-perl. Preparing to unpack .../24-libcpanel-json-xs-perl_4.25-1+b1_amd64.deb ... Unpacking libcpanel-json-xs-perl (4.25-1+b1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../25-libdevel-stacktrace-perl_2.0400-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../26-libexception-class-perl_1.44-1_all.deb ... Unpacking libexception-class-perl (1.44-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../27-libiterator-perl_0.03+ds1-1.1_all.deb ... Unpacking libiterator-perl (0.03+ds1-1.1) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../28-libiterator-util-perl_0.02+ds1-1.1_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-1.1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../29-libexporter-tiny-perl_1.002002-1_all.deb ... Unpacking libexporter-tiny-perl (1.002002-1) ... Selecting previously unselected package liblist-moreutils-xs-perl. Preparing to unpack .../30-liblist-moreutils-xs-perl_0.430-2_amd64.deb ... Unpacking liblist-moreutils-xs-perl (0.430-2) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../31-liblist-moreutils-perl_0.430-2_all.deb ... Unpacking liblist-moreutils-perl (0.430-2) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../32-libparams-util-perl_1.102-1+b1_amd64.deb ... 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Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl (0.59-2+b1) ... Setting up libpath-tiny-perl (0.118-1) ... Setting up lzop (1.04-2) ... Setting up gpgconf (2.2.27-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.6-1) ... Setting up liburi-perl (5.08-1) ... Setting up gpg (2.2.27-2) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libtype-tiny-perl (1.012002-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.12-1+b1) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.110-1.1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004004-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.104.0) ... Setting up sbuild-build-depends-lintian-dummy:ppc64el (0.invalid.0) ... Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-12) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 718664 Build-Time: 560 Distribution: unstable Foreign Architectures: ppc64el Host Architecture: ppc64el Install-Time: 72 Job: vt_0.57721+ds-3 Lintian: pass Machine Architecture: amd64 Package: vt Package-Time: 643 Source-Version: 0.57721+ds-3 Space: 718664 Status: successful Version: 0.57721+ds-3 -------------------------------------------------------------------------------- Finished at 2021-05-19T09:52:56Z Build needed 00:10:43, 718664k disk space