sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | vt 0.57721+ds-3 (riscv64) Fri, 03 Oct 2025 13:58:29 +0000 | +==============================================================================+ Package: vt Version: 0.57721+ds-3 Source Version: 0.57721+ds-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: riscv64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-d599f9c9-acdb-4429-bcbe-a36bf3d9d0f3' with '<>' I: NOTICE: Log filtering will replace 'build/vt-iaNGPJ/resolver-94Cskr' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [207 kB] Get:2 http://localhost:3142/debian unstable/contrib Sources.diff/Index [63.3 kB] Get:3 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:5 http://localhost:3142/debian unstable/contrib Sources T-2025-10-03-0204.58-F-2025-10-03-0204.58.pdiff [682 B] Get:6 http://localhost:3142/debian unstable/main Sources T-2025-10-03-0804.14-F-2025-10-03-0204.58.pdiff [24.4 kB] Get:5 http://localhost:3142/debian unstable/contrib Sources T-2025-10-03-0204.58-F-2025-10-03-0204.58.pdiff [682 B] Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2025-10-03-0804.14-F-2025-10-03-0204.58.pdiff [42.9 kB] Get:6 http://localhost:3142/debian unstable/main Sources T-2025-10-03-0804.14-F-2025-10-03-0204.58.pdiff [24.4 kB] Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2025-10-03-0804.14-F-2025-10-03-0204.58.pdiff [42.9 kB] Get:8 http://localhost:3142/debian unstable/main riscv64 Packages [9820 kB] Fetched 10.3 MB in 3s (3870 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt apt-utils libapt-pkg7.0 3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 3040 kB of archives. After this operation, 20.5 kB of additional disk space will be used. Get:1 http://localhost:3142/debian unstable/main amd64 libapt-pkg7.0 amd64 3.1.7 [1205 kB] Get:2 http://localhost:3142/debian unstable/main amd64 apt amd64 3.1.7 [1484 kB] Get:3 http://localhost:3142/debian unstable/main amd64 apt-utils amd64 3.1.7 [351 kB] Fetched 3040 kB in 0s (141 MB/s) (Reading database ... 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Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'vt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/vt.git Please use: git clone https://salsa.debian.org/med-team/vt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 18.6 MB of source archives. Get:1 http://localhost:3142/debian unstable/main vt 0.57721+ds-3 (dsc) [2162 B] Get:2 http://localhost:3142/debian unstable/main vt 0.57721+ds-3 (tar) [18.6 MB] Get:3 http://localhost:3142/debian unstable/main vt 0.57721+ds-3 (diff) [8092 B] Fetched 18.6 MB in 1s (15.8 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/vt-iaNGPJ/vt-0.57721+ds' with '<>' I: NOTICE: Log filtering will replace 'build/vt-iaNGPJ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, liblzma-dev, libcurl4-gnutls-dev, libssl-dev, libdeflate-dev, libhts-dev, libpcre2-dev, libsvm-dev, libtclap-dev, r-mathlib, r-base-core, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-riscv64:amd64, libc-dev:riscv64, libstdc++-dev:riscv64 Filtered Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, liblzma-dev, libcurl4-gnutls-dev, libssl-dev, libdeflate-dev, libhts-dev, libpcre2-dev, libsvm-dev, libtclap-dev, r-mathlib, r-base-core, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-riscv64:amd64, libc-dev:riscv64, libstdc++-dev:riscv64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [882 B] Get:5 copy:/<>/apt_archive ./ Packages [927 B] Fetched 2418 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-riscv64-linux-gnu bsdextrautils ca-certificates comerr-dev:riscv64 cpp-15-riscv64-linux-gnu cpp-riscv64-linux-gnu crossbuild-essential-riscv64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-15-riscv64-linux-gnu g++-riscv64-linux-gnu gcc-15-base:riscv64 gcc-15-cross-base gcc-15-riscv64-linux-gnu gcc-15-riscv64-linux-gnu-base gcc-riscv64-linux-gnu gettext gettext-base groff-base intltool-debian krb5-multidev:riscv64 libarchive-zip-perl libasan8:riscv64 libasan8-riscv64-cross libatomic1:riscv64 libatomic1-riscv64-cross libblas3:riscv64 libblkid1:riscv64 libbrotli-dev:riscv64 libbrotli1 libbrotli1:riscv64 libbz2-1.0:riscv64 libbz2-dev:riscv64 libc6:riscv64 libc6-dev:riscv64 libc6-dev-riscv64-cross libc6-riscv64-cross libcairo2:riscv64 libcom-err2:riscv64 libcrypt-dev:riscv64 libcrypt1:riscv64 libcurl3t64-gnutls:riscv64 libcurl4-gnutls-dev:riscv64 libcurl4t64:riscv64 libdatrie1:riscv64 libdb5.3t64:riscv64 libdebhelper-perl libdeflate-dev:riscv64 libdeflate0:riscv64 libelf1t64 libevent-2.1-7t64:riscv64 libexpat1 libexpat1:riscv64 libfakeroot libffi8:riscv64 libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1:riscv64 libfreetype6 libfreetype6:riscv64 libfribidi0:riscv64 libgcc-15-dev:riscv64 libgcc-15-dev-riscv64-cross libgcc-s1:riscv64 libgcc-s1-riscv64-cross libgfortran5:riscv64 libglib2.0-0t64:riscv64 libgmp-dev:riscv64 libgmp10:riscv64 libgmpxx4ldbl:riscv64 libgnutls-dane0t64:riscv64 libgnutls-openssl27t64:riscv64 libgnutls28-dev:riscv64 libgnutls30t64:riscv64 libgomp1:riscv64 libgomp1-riscv64-cross libgraphite2-3:riscv64 libgssapi-krb5-2:riscv64 libgssrpc4t64:riscv64 libharfbuzz0b:riscv64 libhogweed6t64:riscv64 libhts-dev:riscv64 libhts3t64:riscv64 libhtscodecs2:riscv64 libice6:riscv64 libicu76:riscv64 libidn2-0:riscv64 libidn2-dev:riscv64 libitm1:riscv64 libitm1-riscv64-cross libjbig0:riscv64 libjpeg62-turbo:riscv64 libk5crypto3:riscv64 libkadm5clnt-mit12:riscv64 libkadm5srv-mit12:riscv64 libkdb5-10t64:riscv64 libkeyutils1:riscv64 libkrb5-3:riscv64 libkrb5-dev:riscv64 libkrb5support0:riscv64 liblapack3:riscv64 libldap-dev:riscv64 libldap2:riscv64 liblerc4:riscv64 liblsan0:riscv64 liblsan0-riscv64-cross liblzma-dev:riscv64 liblzma5:riscv64 libmagic-mgc libmagic1t64 libmount1:riscv64 libncursesw6 libnettle8t64:riscv64 libnghttp2-14:riscv64 libnghttp2-dev:riscv64 libnghttp3-9:riscv64 libnghttp3-dev:riscv64 libngtcp2-16:riscv64 libngtcp2-crypto-gnutls-dev:riscv64 libngtcp2-crypto-gnutls8:riscv64 libngtcp2-dev:riscv64 libp11-kit-dev:riscv64 libp11-kit0:riscv64 libpango-1.0-0:riscv64 libpangocairo-1.0-0:riscv64 libpangoft2-1.0-0:riscv64 libpaper-utils libpaper2 libpcre2-16-0:riscv64 libpcre2-32-0:riscv64 libpcre2-8-0:riscv64 libpcre2-dev:riscv64 libpcre2-posix3:riscv64 libpipeline1 libpixman-1-0:riscv64 libpkgconf3 libpng16-16t64 libpng16-16t64:riscv64 libproc2-0 libpsl-dev:riscv64 libpsl5t64:riscv64 libreadline8t64:riscv64 librtmp-dev:riscv64 librtmp1:riscv64 libsasl2-2:riscv64 libsasl2-modules-db:riscv64 libselinux1:riscv64 libsharpyuv0:riscv64 libsm6:riscv64 libssh2-1-dev:riscv64 libssh2-1t64:riscv64 libssl-dev:riscv64 libssl3t64:riscv64 libstdc++-15-dev:riscv64 libstdc++-15-dev-riscv64-cross libstdc++6:riscv64 libstdc++6-riscv64-cross libsvm-dev:riscv64 libsvm3:riscv64 libtasn1-6:riscv64 libtasn1-6-dev:riscv64 libtcl8.6:riscv64 libtclap-dev:riscv64 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0:riscv64 libtiff6:riscv64 libtinfo6:riscv64 libtirpc-common libtirpc3t64:riscv64 libtk8.6:riscv64 libtool libtsan2:riscv64 libtsan2-riscv64-cross libubsan1:riscv64 libubsan1-riscv64-cross libuchardet0 libunbound8:riscv64 libunistring5 libunistring5:riscv64 libuuid1:riscv64 libwebp7:riscv64 libx11-6:riscv64 libx11-data libxau6:riscv64 libxcb-render0:riscv64 libxcb-shm0:riscv64 libxcb1:riscv64 libxdmcp6:riscv64 libxext6:riscv64 libxft2:riscv64 libxml2-16 libxrender1:riscv64 libxss1:riscv64 libxt6t64:riscv64 libzstd-dev:riscv64 libzstd1:riscv64 linux-libc-dev-riscv64-cross m4 man-db nettle-dev:riscv64 openssl pkgconf:riscv64 pkgconf-bin po-debconf procps r-base-core:riscv64 r-mathlib:riscv64 readline-common sensible-utils ucf unzip x11-common xdg-utils zip zlib1g:riscv64 zlib1g-dev:riscv64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc doc-base:riscv64 gcc-15-locales cpp-15-doc cpp-doc dh-make gcc-15-doc manpages-dev flex bison gdb-riscv64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff krb5-doc:riscv64 glibc-doc:riscv64 libc-l10n:riscv64 locales:riscv64 libnss-nis:riscv64 libnss-nisplus:riscv64 manpages-dev:riscv64 libcurl4-doc:riscv64 libidn-dev:riscv64 low-memory-monitor:riscv64 gmp-doc:riscv64 libgmp10-doc:riscv64 libmpfr-dev:riscv64 dns-root-data:riscv64 gnutls-bin:riscv64 gnutls-doc:riscv64 krb5-user:riscv64 liblzma-doc:riscv64 cryptsetup-bin:riscv64 libnghttp2-doc:riscv64 p11-kit-doc:riscv64 libssl-doc:riscv64 libstdc++-15-doc:riscv64 tcl8.6:riscv64 tk8.6:riscv64 libtool-doc gfortran | fortran95-compiler uuid-runtime:riscv64 m4-doc apparmor less www-browser libmail-box-perl elpa-ess:riscv64 r-doc-info:riscv64 | r-doc-pdf:riscv64 r-base-html:riscv64 readline-doc Recommended packages: curl | wget | lynx bzip2-doc:riscv64 libarchive-cpio-perl libglib2.0-data:riscv64 shared-mime-info:riscv64 xdg-user-dirs:riscv64 krb5-locales:riscv64 libldap-common:riscv64 libgpm2 publicsuffix:riscv64 libsasl2-modules:riscv64 libtasn1-doc:riscv64 libltdl-dev libmail-sendmail-perl psmisc linux-sysctl-defaults r-recommended:riscv64 r-base-dev:riscv64 r-doc-html:riscv64 libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-riscv64-linux-gnu bsdextrautils ca-certificates comerr-dev:riscv64 cpp-15-riscv64-linux-gnu cpp-riscv64-linux-gnu crossbuild-essential-riscv64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono g++-15-riscv64-linux-gnu g++-riscv64-linux-gnu gcc-15-base:riscv64 gcc-15-cross-base gcc-15-riscv64-linux-gnu gcc-15-riscv64-linux-gnu-base gcc-riscv64-linux-gnu gettext gettext-base groff-base intltool-debian krb5-multidev:riscv64 libarchive-zip-perl libasan8:riscv64 libasan8-riscv64-cross libatomic1:riscv64 libatomic1-riscv64-cross libblas3:riscv64 libblkid1:riscv64 libbrotli-dev:riscv64 libbrotli1 libbrotli1:riscv64 libbz2-1.0:riscv64 libbz2-dev:riscv64 libc6:riscv64 libc6-dev:riscv64 libc6-dev-riscv64-cross libc6-riscv64-cross libcairo2:riscv64 libcom-err2:riscv64 libcrypt-dev:riscv64 libcrypt1:riscv64 libcurl3t64-gnutls:riscv64 libcurl4-gnutls-dev:riscv64 libcurl4t64:riscv64 libdatrie1:riscv64 libdb5.3t64:riscv64 libdebhelper-perl libdeflate-dev:riscv64 libdeflate0:riscv64 libelf1t64 libevent-2.1-7t64:riscv64 libexpat1 libexpat1:riscv64 libfakeroot libffi8:riscv64 libfile-stripnondeterminism-perl libfontconfig1 libfontconfig1:riscv64 libfreetype6 libfreetype6:riscv64 libfribidi0:riscv64 libgcc-15-dev:riscv64 libgcc-15-dev-riscv64-cross libgcc-s1:riscv64 libgcc-s1-riscv64-cross libgfortran5:riscv64 libglib2.0-0t64:riscv64 libgmp-dev:riscv64 libgmp10:riscv64 libgmpxx4ldbl:riscv64 libgnutls-dane0t64:riscv64 libgnutls-openssl27t64:riscv64 libgnutls28-dev:riscv64 libgnutls30t64:riscv64 libgomp1:riscv64 libgomp1-riscv64-cross libgraphite2-3:riscv64 libgssapi-krb5-2:riscv64 libgssrpc4t64:riscv64 libharfbuzz0b:riscv64 libhogweed6t64:riscv64 libhts-dev:riscv64 libhts3t64:riscv64 libhtscodecs2:riscv64 libice6:riscv64 libicu76:riscv64 libidn2-0:riscv64 libidn2-dev:riscv64 libitm1:riscv64 libitm1-riscv64-cross libjbig0:riscv64 libjpeg62-turbo:riscv64 libk5crypto3:riscv64 libkadm5clnt-mit12:riscv64 libkadm5srv-mit12:riscv64 libkdb5-10t64:riscv64 libkeyutils1:riscv64 libkrb5-3:riscv64 libkrb5-dev:riscv64 libkrb5support0:riscv64 liblapack3:riscv64 libldap-dev:riscv64 libldap2:riscv64 liblerc4:riscv64 liblsan0:riscv64 liblsan0-riscv64-cross liblzma-dev:riscv64 liblzma5:riscv64 libmagic-mgc libmagic1t64 libmount1:riscv64 libncursesw6 libnettle8t64:riscv64 libnghttp2-14:riscv64 libnghttp2-dev:riscv64 libnghttp3-9:riscv64 libnghttp3-dev:riscv64 libngtcp2-16:riscv64 libngtcp2-crypto-gnutls-dev:riscv64 libngtcp2-crypto-gnutls8:riscv64 libngtcp2-dev:riscv64 libp11-kit-dev:riscv64 libp11-kit0:riscv64 libpango-1.0-0:riscv64 libpangocairo-1.0-0:riscv64 libpangoft2-1.0-0:riscv64 libpaper-utils libpaper2 libpcre2-16-0:riscv64 libpcre2-32-0:riscv64 libpcre2-8-0:riscv64 libpcre2-dev:riscv64 libpcre2-posix3:riscv64 libpipeline1 libpixman-1-0:riscv64 libpkgconf3 libpng16-16t64 libpng16-16t64:riscv64 libproc2-0 libpsl-dev:riscv64 libpsl5t64:riscv64 libreadline8t64:riscv64 librtmp-dev:riscv64 librtmp1:riscv64 libsasl2-2:riscv64 libsasl2-modules-db:riscv64 libselinux1:riscv64 libsharpyuv0:riscv64 libsm6:riscv64 libssh2-1-dev:riscv64 libssh2-1t64:riscv64 libssl-dev:riscv64 libssl3t64:riscv64 libstdc++-15-dev:riscv64 libstdc++-15-dev-riscv64-cross libstdc++6:riscv64 libstdc++6-riscv64-cross libsvm-dev:riscv64 libsvm3:riscv64 libtasn1-6:riscv64 libtasn1-6-dev:riscv64 libtcl8.6:riscv64 libtclap-dev:riscv64 libtext-charwidth-perl libtext-wrapi18n-perl libthai-data libthai0:riscv64 libtiff6:riscv64 libtinfo6:riscv64 libtirpc-common libtirpc3t64:riscv64 libtk8.6:riscv64 libtool libtsan2:riscv64 libtsan2-riscv64-cross libubsan1:riscv64 libubsan1-riscv64-cross libuchardet0 libunbound8:riscv64 libunistring5 libunistring5:riscv64 libuuid1:riscv64 libwebp7:riscv64 libx11-6:riscv64 libx11-data libxau6:riscv64 libxcb-render0:riscv64 libxcb-shm0:riscv64 libxcb1:riscv64 libxdmcp6:riscv64 libxext6:riscv64 libxft2:riscv64 libxml2-16 libxrender1:riscv64 libxss1:riscv64 libxt6t64:riscv64 libzstd-dev:riscv64 libzstd1:riscv64 linux-libc-dev-riscv64-cross m4 man-db nettle-dev:riscv64 openssl pkgconf:riscv64 pkgconf-bin po-debconf procps r-base-core:riscv64 r-mathlib:riscv64 readline-common sbuild-build-depends-main-dummy:riscv64 sensible-utils ucf unzip x11-common xdg-utils zip zlib1g:riscv64 zlib1g-dev:riscv64 0 upgraded, 231 newly installed, 0 to remove and 0 not upgraded. Need to get 488 MB of archives. After this operation, 2428 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [988 B] Get:2 http://localhost:3142/debian unstable/main riscv64 gcc-15-base riscv64 15.2.0-4 [52.8 kB] Get:3 http://localhost:3142/debian unstable/main riscv64 libgcc-s1 riscv64 15.2.0-4 [61.5 kB] Get:4 http://localhost:3142/debian unstable/main riscv64 libc6 riscv64 2.41-12 [2472 kB] Get:5 http://localhost:3142/debian unstable/main riscv64 libexpat1 riscv64 2.7.3-1 [106 kB] Get:6 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5+20250216-2 [135 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB] Get:9 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB] Get:10 http://localhost:3142/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB] Get:11 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB] Get:12 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.5.4-1 [1496 kB] Get:13 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20250419 [162 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB] Get:15 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB] Get:16 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB] Get:17 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-2+b1 [244 kB] Get:18 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB] Get:19 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB] Get:20 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.41.2-3 [98.3 kB] Get:21 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:22 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB] Get:23 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:24 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:25 http://localhost:3142/debian unstable/main amd64 ucf all 3.0052 [43.3 kB] Get:26 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.20-1 [324 kB] Get:27 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB] Get:28 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB] Get:29 http://localhost:3142/debian unstable/main amd64 automake all 1:1.17-4 [862 kB] Get:30 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-2 [770 kB] Get:31 http://localhost:3142/debian unstable/main amd64 binutils-riscv64-linux-gnu amd64 2.45-7 [1563 kB] Get:32 http://localhost:3142/debian unstable/main riscv64 libcrypt1 riscv64 1:4.4.38-1 [106 kB] Get:33 http://localhost:3142/debian unstable/main riscv64 libcrypt-dev riscv64 1:4.4.38-1 [221 kB] Get:34 http://localhost:3142/debian unstable/main riscv64 libc6-dev riscv64 2.41-12 [3127 kB] Get:35 http://localhost:3142/debian unstable/main riscv64 libcom-err2 riscv64 1.47.2-3+b3 [24.7 kB] Get:36 http://localhost:3142/debian unstable/main riscv64 comerr-dev riscv64 2.1-1.47.2-3+b3 [60.1 kB] Get:37 http://localhost:3142/debian unstable/main amd64 gcc-15-riscv64-linux-gnu-base amd64 15.2.0-4cross1 [53.0 kB] Get:38 http://localhost:3142/debian unstable/main amd64 cpp-15-riscv64-linux-gnu amd64 15.2.0-4cross1 [99.5 MB] Get:39 http://localhost:3142/debian unstable/main amd64 cpp-riscv64-linux-gnu amd64 4:15.2.0-4 [5288 B] Get:40 http://localhost:3142/debian unstable/main amd64 gcc-15-cross-base all 15.2.0-4cross1 [48.4 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libc6-riscv64-cross all 2.41-11cross1 [1170 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libgcc-s1-riscv64-cross all 15.2.0-4cross1 [61.6 kB] Get:43 http://localhost:3142/debian unstable/main amd64 libgomp1-riscv64-cross all 15.2.0-4cross1 [129 kB] Get:44 http://localhost:3142/debian unstable/main amd64 libitm1-riscv64-cross all 15.2.0-4cross1 [24.9 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libatomic1-riscv64-cross all 15.2.0-4cross1 [8220 B] Get:46 http://localhost:3142/debian unstable/main amd64 libasan8-riscv64-cross all 15.2.0-4cross1 [2925 kB] Get:47 http://localhost:3142/debian unstable/main amd64 liblsan0-riscv64-cross all 15.2.0-4cross1 [1324 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libtsan2-riscv64-cross all 15.2.0-4cross1 [2641 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libstdc++6-riscv64-cross all 15.2.0-4cross1 [665 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libubsan1-riscv64-cross all 15.2.0-4cross1 [1177 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libgcc-15-dev-riscv64-cross all 15.2.0-4cross1 [5687 kB] Get:52 http://localhost:3142/debian unstable/main amd64 gcc-15-riscv64-linux-gnu amd64 15.2.0-4cross1 [111 MB] Get:53 http://localhost:3142/debian unstable/main amd64 gcc-riscv64-linux-gnu amd64 4:15.2.0-4 [1444 B] Get:54 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-riscv64-cross all 6.12.38-1cross1 [2440 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libc6-dev-riscv64-cross all 2.41-11cross1 [3121 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libstdc++-15-dev-riscv64-cross all 15.2.0-4cross1 [6427 kB] Get:57 http://localhost:3142/debian unstable/main amd64 g++-15-riscv64-linux-gnu amd64 15.2.0-4cross1 [105 MB] Get:58 http://localhost:3142/debian unstable/main amd64 g++-riscv64-linux-gnu amd64 4:15.2.0-4 [1200 B] Get:59 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-riscv64 all 12.12 [3544 B] Get:60 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get:62 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:65 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:66 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get:67 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:69 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get:70 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get:71 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:72 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:73 http://localhost:3142/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get:74 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1.2-1 [29.7 kB] Get:75 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1.2-1 [76.0 kB] Get:76 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB] Get:77 http://localhost:3142/debian unstable/main amd64 libpng16-16t64 amd64 1.6.50-1 [282 kB] Get:78 http://localhost:3142/debian unstable/main amd64 libfreetype6 amd64 2.13.3+dfsg-1 [452 kB] Get:79 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:80 http://localhost:3142/debian unstable/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:81 http://localhost:3142/debian unstable/main amd64 fontconfig-config amd64 2.15.0-2.4 [318 kB] Get:82 http://localhost:3142/debian unstable/main amd64 libfontconfig1 amd64 2.15.0-2.4 [401 kB] Get:83 http://localhost:3142/debian unstable/main amd64 fontconfig amd64 2.15.0-2.4 [464 kB] Get:84 http://localhost:3142/debian unstable/main riscv64 libkrb5support0 riscv64 1.21.3-5 [34.0 kB] Get:85 http://localhost:3142/debian unstable/main riscv64 libk5crypto3 riscv64 1.21.3-5 [100 kB] Get:86 http://localhost:3142/debian unstable/main riscv64 libkeyutils1 riscv64 1.6.3-6 [9480 B] Get:87 http://localhost:3142/debian unstable/main riscv64 libzstd1 riscv64 1.5.7+dfsg-1.1 [361 kB] Get:88 http://localhost:3142/debian unstable/main riscv64 zlib1g riscv64 1:1.3.dfsg+really1.3.1-1+b1 [85.7 kB] Get:89 http://localhost:3142/debian unstable/main riscv64 libssl3t64 riscv64 3.5.4-1 [2206 kB] Get:90 http://localhost:3142/debian unstable/main riscv64 libkrb5-3 riscv64 1.21.3-5 [334 kB] Get:91 http://localhost:3142/debian unstable/main riscv64 libgssapi-krb5-2 riscv64 1.21.3-5 [143 kB] Get:92 http://localhost:3142/debian unstable/main riscv64 libgssrpc4t64 riscv64 1.21.3-5 [60.7 kB] Get:93 http://localhost:3142/debian unstable/main riscv64 libkadm5clnt-mit12 riscv64 1.21.3-5 [42.2 kB] Get:94 http://localhost:3142/debian unstable/main riscv64 libkdb5-10t64 riscv64 1.21.3-5 [43.4 kB] Get:95 http://localhost:3142/debian unstable/main riscv64 libkadm5srv-mit12 riscv64 1.21.3-5 [54.9 kB] Get:96 http://localhost:3142/debian unstable/main riscv64 krb5-multidev riscv64 1.21.3-5 [126 kB] Get:97 http://localhost:3142/debian unstable/main riscv64 libasan8 riscv64 15.2.0-4 [2938 kB] Get:98 http://localhost:3142/debian unstable/main riscv64 libatomic1 riscv64 15.2.0-4 [8532 B] Get:99 http://localhost:3142/debian unstable/main riscv64 libblas3 riscv64 3.12.1-7 [123 kB] Get:100 http://localhost:3142/debian unstable/main riscv64 libblkid1 riscv64 2.41.2-3 [193 kB] Get:101 http://localhost:3142/debian unstable/main riscv64 libbrotli1 riscv64 1.1.0-2+b7 [358 kB] Get:102 http://localhost:3142/debian unstable/main riscv64 libbrotli-dev riscv64 1.1.0-2+b7 [798 kB] Get:103 http://localhost:3142/debian unstable/main riscv64 libbz2-1.0 riscv64 1.0.8-6 [40.3 kB] Get:104 http://localhost:3142/debian unstable/main riscv64 libbz2-dev riscv64 1.0.8-6 [69.9 kB] Get:105 http://localhost:3142/debian unstable/main riscv64 libpng16-16t64 riscv64 1.6.50-1 [286 kB] Get:106 http://localhost:3142/debian unstable/main riscv64 libfreetype6 riscv64 2.13.3+dfsg-1 [467 kB] Get:107 http://localhost:3142/debian unstable/main riscv64 libfontconfig1 riscv64 2.15.0-2.4 [399 kB] Get:108 http://localhost:3142/debian unstable/main riscv64 libpixman-1-0 riscv64 0.46.4-1 [178 kB] Get:109 http://localhost:3142/debian unstable/main riscv64 libxau6 riscv64 1:1.0.11-1 [20.5 kB] Get:110 http://localhost:3142/debian unstable/main riscv64 libxdmcp6 riscv64 1:1.1.5-1 [28.0 kB] Get:111 http://localhost:3142/debian unstable/main riscv64 libxcb1 riscv64 1.17.0-2+b1 [145 kB] Get:112 http://localhost:3142/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB] Get:113 http://localhost:3142/debian unstable/main riscv64 libx11-6 riscv64 2:1.8.12-1 [817 kB] Get:114 http://localhost:3142/debian unstable/main riscv64 libxcb-render0 riscv64 1.17.0-2+b1 [115 kB] Get:115 http://localhost:3142/debian unstable/main riscv64 libxcb-shm0 riscv64 1.17.0-2+b1 [105 kB] Get:116 http://localhost:3142/debian unstable/main riscv64 libxext6 riscv64 2:1.3.4-1+b3 [51.7 kB] Get:117 http://localhost:3142/debian unstable/main riscv64 libxrender1 riscv64 1:0.9.12-1 [28.5 kB] Get:118 http://localhost:3142/debian unstable/main riscv64 libcairo2 riscv64 1.18.4-1+b1 [544 kB] Get:119 http://localhost:3142/debian unstable/main riscv64 libgmp10 riscv64 2:6.3.0+dfsg-5 [558 kB] Get:120 http://localhost:3142/debian unstable/main riscv64 libnettle8t64 riscv64 3.10.2-1 [332 kB] Get:121 http://localhost:3142/debian unstable/main riscv64 libhogweed6t64 riscv64 3.10.2-1 [336 kB] Get:122 http://localhost:3142/debian unstable/main riscv64 libunistring5 riscv64 1.3-2 [474 kB] Get:123 http://localhost:3142/debian unstable/main riscv64 libidn2-0 riscv64 2.3.8-4 [110 kB] Get:124 http://localhost:3142/debian unstable/main riscv64 libffi8 riscv64 3.5.2-2 [21.8 kB] Get:125 http://localhost:3142/debian unstable/main riscv64 libp11-kit0 riscv64 0.25.9-2 [449 kB] Get:126 http://localhost:3142/debian unstable/main riscv64 libtasn1-6 riscv64 4.20.0-2 [50.6 kB] Get:127 http://localhost:3142/debian unstable/main riscv64 libgnutls30t64 riscv64 3.8.10-2 [1463 kB] Get:128 http://localhost:3142/debian unstable/main riscv64 libdb5.3t64 riscv64 5.3.28+dfsg2-9 [716 kB] Get:129 http://localhost:3142/debian unstable/main riscv64 libsasl2-modules-db riscv64 2.1.28+dfsg1-9 [20.5 kB] Get:130 http://localhost:3142/debian unstable/main riscv64 libsasl2-2 riscv64 2.1.28+dfsg1-9 [60.9 kB] Get:131 http://localhost:3142/debian unstable/main riscv64 libldap2 riscv64 2.6.10+dfsg-1 [197 kB] Get:132 http://localhost:3142/debian unstable/main riscv64 libnghttp2-14 riscv64 1.64.0-1.1+b1 [78.1 kB] Get:133 http://localhost:3142/debian unstable/main riscv64 libnghttp3-9 riscv64 1.12.0-1 [68.4 kB] Get:134 http://localhost:3142/debian unstable/main riscv64 libngtcp2-16 riscv64 1.16.0-1 [141 kB] Get:135 http://localhost:3142/debian unstable/main riscv64 libngtcp2-crypto-gnutls8 riscv64 1.16.0-1 [25.3 kB] Get:136 http://localhost:3142/debian unstable/main riscv64 libpsl5t64 riscv64 0.21.2-1.1+b1 [57.3 kB] Get:137 http://localhost:3142/debian unstable/main riscv64 librtmp1 riscv64 2.4+20151223.gitfa8646d.1-3 [58.7 kB] Get:138 http://localhost:3142/debian unstable/main riscv64 libssh2-1t64 riscv64 1.11.1-1 [249 kB] Get:139 http://localhost:3142/debian unstable/main riscv64 libcurl3t64-gnutls riscv64 8.16.0-1 [404 kB] Get:140 http://localhost:3142/debian unstable/main riscv64 libevent-2.1-7t64 riscv64 2.1.12-stable-10+b1 [182 kB] Get:141 http://localhost:3142/debian unstable/main riscv64 libunbound8 riscv64 1.24.0-2 [615 kB] Get:142 http://localhost:3142/debian unstable/main riscv64 libgnutls-dane0t64 riscv64 3.8.10-2 [456 kB] Get:143 http://localhost:3142/debian unstable/main riscv64 libgnutls-openssl27t64 riscv64 3.8.10-2 [456 kB] Get:144 http://localhost:3142/debian unstable/main riscv64 libidn2-dev riscv64 2.3.8-4 [135 kB] Get:145 http://localhost:3142/debian unstable/main riscv64 libp11-kit-dev riscv64 0.25.9-2 [220 kB] Get:146 http://localhost:3142/debian unstable/main riscv64 libtasn1-6-dev riscv64 4.20.0-2 [149 kB] Get:147 http://localhost:3142/debian unstable/main riscv64 libstdc++6 riscv64 15.2.0-4 [714 kB] Get:148 http://localhost:3142/debian unstable/main riscv64 libgmpxx4ldbl riscv64 2:6.3.0+dfsg-5 [329 kB] Get:149 http://localhost:3142/debian unstable/main riscv64 libgmp-dev riscv64 2:6.3.0+dfsg-5 [1024 kB] Get:150 http://localhost:3142/debian unstable/main riscv64 nettle-dev riscv64 3.10.2-1 [1557 kB] Get:151 http://localhost:3142/debian unstable/main riscv64 libgnutls28-dev riscv64 3.8.10-2 [2648 kB] Get:152 http://localhost:3142/debian unstable/main riscv64 libkrb5-dev riscv64 1.21.3-5 [16.1 kB] Get:153 http://localhost:3142/debian unstable/main riscv64 libldap-dev riscv64 2.6.10+dfsg-1 [584 kB] Get:154 http://localhost:3142/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:155 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:156 http://localhost:3142/debian unstable/main riscv64 pkgconf riscv64 1.8.1-4 [26.1 kB] Get:157 http://localhost:3142/debian unstable/main riscv64 libnghttp2-dev riscv64 1.64.0-1.1+b1 [220 kB] Get:158 http://localhost:3142/debian unstable/main riscv64 libnghttp3-dev riscv64 1.12.0-1 [203 kB] Get:159 http://localhost:3142/debian unstable/main riscv64 libngtcp2-crypto-gnutls-dev riscv64 1.16.0-1 [43.5 kB] Get:160 http://localhost:3142/debian unstable/main riscv64 libngtcp2-dev riscv64 1.16.0-1 [452 kB] Get:161 http://localhost:3142/debian unstable/main riscv64 libpsl-dev riscv64 0.21.2-1.1+b1 [87.2 kB] Get:162 http://localhost:3142/debian unstable/main riscv64 zlib1g-dev riscv64 1:1.3.dfsg+really1.3.1-1+b1 [978 kB] Get:163 http://localhost:3142/debian unstable/main riscv64 librtmp-dev riscv64 2.4+20151223.gitfa8646d.1-3 [119 kB] Get:164 http://localhost:3142/debian unstable/main riscv64 libssl-dev riscv64 3.5.4-1 [6304 kB] Get:165 http://localhost:3142/debian unstable/main riscv64 libssh2-1-dev riscv64 1.11.1-1 [560 kB] Get:166 http://localhost:3142/debian unstable/main riscv64 libzstd-dev riscv64 1.5.7+dfsg-1.1 [1393 kB] Get:167 http://localhost:3142/debian unstable/main riscv64 libcurl4-gnutls-dev riscv64 8.16.0-1 [1296 kB] Get:168 http://localhost:3142/debian unstable/main riscv64 libcurl4t64 riscv64 8.16.0-1 [413 kB] Get:169 http://localhost:3142/debian unstable/main riscv64 libdatrie1 riscv64 0.2.13-4 [38.4 kB] Get:170 http://localhost:3142/debian unstable/main riscv64 libdeflate0 riscv64 1.23-2 [38.8 kB] Get:171 http://localhost:3142/debian unstable/main riscv64 libdeflate-dev riscv64 1.23-2 [80.1 kB] Get:172 http://localhost:3142/debian unstable/main riscv64 libfribidi0 riscv64 1.0.16-3 [27.7 kB] Get:173 http://localhost:3142/debian unstable/main riscv64 libgomp1 riscv64 15.2.0-4 [131 kB] Get:174 http://localhost:3142/debian unstable/main riscv64 libitm1 riscv64 15.2.0-4 [25.5 kB] Get:175 http://localhost:3142/debian unstable/main riscv64 liblsan0 riscv64 15.2.0-4 [1326 kB] Get:176 http://localhost:3142/debian unstable/main riscv64 libtsan2 riscv64 15.2.0-4 [2652 kB] Get:177 http://localhost:3142/debian unstable/main riscv64 libubsan1 riscv64 15.2.0-4 [1177 kB] Get:178 http://localhost:3142/debian unstable/main riscv64 libgcc-15-dev riscv64 15.2.0-4 [5686 kB] Get:179 http://localhost:3142/debian unstable/main riscv64 libgfortran5 riscv64 15.2.0-4 [421 kB] Get:180 http://localhost:3142/debian unstable/main riscv64 libpcre2-8-0 riscv64 10.46-1 [301 kB] Get:181 http://localhost:3142/debian unstable/main riscv64 libselinux1 riscv64 3.8.1-1 [88.1 kB] Get:182 http://localhost:3142/debian unstable/main riscv64 libmount1 riscv64 2.41.2-3 [226 kB] Get:183 http://localhost:3142/debian unstable/main riscv64 libglib2.0-0t64 riscv64 2.84.4-3 [1528 kB] Get:184 http://localhost:3142/debian unstable/main riscv64 libgraphite2-3 riscv64 1.3.14-9 [78.9 kB] Get:185 http://localhost:3142/debian unstable/main riscv64 libharfbuzz0b riscv64 12.1.0-1 [583 kB] Get:186 http://localhost:3142/debian unstable/main riscv64 libhtscodecs2 riscv64 1.6.1-2 [74.7 kB] Get:187 http://localhost:3142/debian unstable/main riscv64 liblzma5 riscv64 5.8.1-1.1 [313 kB] Get:188 http://localhost:3142/debian unstable/main riscv64 libhts3t64 riscv64 1.22.1+ds2-1 [479 kB] Get:189 http://localhost:3142/debian unstable/main riscv64 liblzma-dev riscv64 5.8.1-1.1 [476 kB] Get:190 http://localhost:3142/debian unstable/main riscv64 libhts-dev riscv64 1.22.1+ds2-1 [3174 kB] Get:191 http://localhost:3142/debian unstable/main amd64 x11-common all 1:7.7+25 [217 kB] Get:192 http://localhost:3142/debian unstable/main riscv64 libice6 riscv64 2:1.1.1-1 [64.8 kB] Get:193 http://localhost:3142/debian unstable/main riscv64 libicu76 riscv64 76.1-4 [9694 kB] Get:194 http://localhost:3142/debian unstable/main riscv64 libjbig0 riscv64 2.1-6.1+b2 [33.0 kB] Get:195 http://localhost:3142/debian unstable/main riscv64 libjpeg62-turbo riscv64 1:2.1.5-4 [155 kB] Get:196 http://localhost:3142/debian unstable/main riscv64 liblapack3 riscv64 3.12.1-7 [1971 kB] Get:197 http://localhost:3142/debian unstable/main riscv64 liblerc4 riscv64 4.0.0+ds-5 [181 kB] Get:198 http://localhost:3142/debian unstable/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:199 http://localhost:3142/debian unstable/main riscv64 libthai0 riscv64 0.1.29-2+b1 [49.2 kB] Get:200 http://localhost:3142/debian unstable/main riscv64 libpango-1.0-0 riscv64 1.56.3-2 [225 kB] Get:201 http://localhost:3142/debian unstable/main riscv64 libpangoft2-1.0-0 riscv64 1.56.3-2 [56.2 kB] Get:202 http://localhost:3142/debian unstable/main riscv64 libpangocairo-1.0-0 riscv64 1.56.3-2 [35.0 kB] Get:203 http://localhost:3142/debian unstable/main amd64 libpaper2 amd64 2.2.5-0.3+b2 [16.7 kB] Get:204 http://localhost:3142/debian unstable/main amd64 libpaper-utils amd64 2.2.5-0.3+b2 [16.5 kB] Get:205 http://localhost:3142/debian unstable/main riscv64 libpcre2-16-0 riscv64 10.46-1 [277 kB] Get:206 http://localhost:3142/debian unstable/main riscv64 libpcre2-32-0 riscv64 10.46-1 [264 kB] Get:207 http://localhost:3142/debian unstable/main riscv64 libpcre2-posix3 riscv64 10.46-1 [63.7 kB] Get:208 http://localhost:3142/debian unstable/main riscv64 libpcre2-dev riscv64 10.46-1 [1914 kB] Get:209 http://localhost:3142/debian unstable/main riscv64 libtinfo6 riscv64 6.5+20250216-2 [347 kB] Get:210 http://localhost:3142/debian unstable/main riscv64 libreadline8t64 riscv64 8.3-3 [181 kB] Get:211 http://localhost:3142/debian unstable/main riscv64 libsharpyuv0 riscv64 1.5.0-0.1 [114 kB] Get:212 http://localhost:3142/debian unstable/main riscv64 libuuid1 riscv64 2.41.2-3 [39.8 kB] Get:213 http://localhost:3142/debian unstable/main riscv64 libsm6 riscv64 2:1.2.6-1 [37.3 kB] Get:214 http://localhost:3142/debian unstable/main riscv64 libstdc++-15-dev riscv64 15.2.0-4 [6140 kB] Get:215 http://localhost:3142/debian unstable/main riscv64 libsvm3 riscv64 3.24+ds-6.1 [40.2 kB] Get:216 http://localhost:3142/debian unstable/main riscv64 libsvm-dev riscv64 3.24+ds-6.1 [92.2 kB] Get:217 http://localhost:3142/debian unstable/main riscv64 libtcl8.6 riscv64 8.6.17+dfsg-1 [1066 kB] Get:218 http://localhost:3142/debian unstable/main riscv64 libtclap-dev riscv64 1.2.5-1+b2 [3359 kB] Get:219 http://localhost:3142/debian unstable/main riscv64 libwebp7 riscv64 1.5.0-0.1 [286 kB] Get:220 http://localhost:3142/debian unstable/main riscv64 libtiff6 riscv64 4.7.1-1 [354 kB] Get:221 http://localhost:3142/debian unstable/main amd64 libtirpc-common all 1.3.6+ds-1 [11.0 kB] Get:222 http://localhost:3142/debian unstable/main riscv64 libtirpc3t64 riscv64 1.3.6+ds-1 [86.0 kB] Get:223 http://localhost:3142/debian unstable/main riscv64 libxft2 riscv64 2.3.6-1+b4 [53.1 kB] Get:224 http://localhost:3142/debian unstable/main riscv64 libxss1 riscv64 1:1.2.3-1+b3 [16.9 kB] Get:225 http://localhost:3142/debian unstable/main riscv64 libtk8.6 riscv64 8.6.17-1 [800 kB] Get:226 http://localhost:3142/debian unstable/main riscv64 libxt6t64 riscv64 1:1.2.1-1.3 [184 kB] Get:227 http://localhost:3142/debian unstable/main amd64 zip amd64 3.0-15 [235 kB] Get:228 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB] Get:229 http://localhost:3142/debian unstable/main amd64 xdg-utils all 1.2.1-2 [75.8 kB] Get:230 http://localhost:3142/debian unstable/main riscv64 r-base-core riscv64 4.5.1-1 [28.7 MB] Get:231 http://localhost:3142/debian unstable/main riscv64 r-mathlib riscv64 4.5.1-1 [2886 kB] Preconfiguring packages ... Fetched 488 MB in 2s (205 MB/s) Selecting previously unselected package gcc-15-base:riscv64. (Reading database ... 12899 files and directories currently installed.) Preparing to unpack .../gcc-15-base_15.2.0-4_riscv64.deb ... Unpacking gcc-15-base:riscv64 (15.2.0-4) ... Selecting previously unselected package libgcc-s1:riscv64. Preparing to unpack .../libgcc-s1_15.2.0-4_riscv64.deb ... Unpacking libgcc-s1:riscv64 (15.2.0-4) ... Selecting previously unselected package libc6:riscv64. Preparing to unpack .../libc6_2.41-12_riscv64.deb ... Unpacking libc6:riscv64 (2.41-12) ... Setting up gcc-15-base:riscv64 (15.2.0-4) ... Setting up libgcc-s1:riscv64 (15.2.0-4) ... Setting up libc6:riscv64 (2.41-12) ... Selecting previously unselected package libexpat1:riscv64. (Reading database ... 13183 files and directories currently installed.) Preparing to unpack .../000-libexpat1_2.7.3-1_riscv64.deb ... Unpacking libexpat1:riscv64 (2.7.3-1) ... Selecting previously unselected package libexpat1:amd64. 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Selecting previously unselected package libfribidi0:riscv64. Preparing to unpack .../167-libfribidi0_1.0.16-3_riscv64.deb ... Unpacking libfribidi0:riscv64 (1.0.16-3) ... Selecting previously unselected package libgomp1:riscv64. Preparing to unpack .../168-libgomp1_15.2.0-4_riscv64.deb ... Unpacking libgomp1:riscv64 (15.2.0-4) ... Selecting previously unselected package libitm1:riscv64. Preparing to unpack .../169-libitm1_15.2.0-4_riscv64.deb ... Unpacking libitm1:riscv64 (15.2.0-4) ... Selecting previously unselected package liblsan0:riscv64. Preparing to unpack .../170-liblsan0_15.2.0-4_riscv64.deb ... Unpacking liblsan0:riscv64 (15.2.0-4) ... Selecting previously unselected package libtsan2:riscv64. Preparing to unpack .../171-libtsan2_15.2.0-4_riscv64.deb ... Unpacking libtsan2:riscv64 (15.2.0-4) ... Selecting previously unselected package libubsan1:riscv64. Preparing to unpack .../172-libubsan1_15.2.0-4_riscv64.deb ... Unpacking libubsan1:riscv64 (15.2.0-4) ... Selecting previously unselected package libgcc-15-dev:riscv64. Preparing to unpack .../173-libgcc-15-dev_15.2.0-4_riscv64.deb ... Unpacking libgcc-15-dev:riscv64 (15.2.0-4) ... Selecting previously unselected package libgfortran5:riscv64. Preparing to unpack .../174-libgfortran5_15.2.0-4_riscv64.deb ... Unpacking libgfortran5:riscv64 (15.2.0-4) ... Selecting previously unselected package libpcre2-8-0:riscv64. Preparing to unpack .../175-libpcre2-8-0_10.46-1_riscv64.deb ... Unpacking libpcre2-8-0:riscv64 (10.46-1) ... Selecting previously unselected package libselinux1:riscv64. Preparing to unpack .../176-libselinux1_3.8.1-1_riscv64.deb ... Unpacking libselinux1:riscv64 (3.8.1-1) ... Selecting previously unselected package libmount1:riscv64. Preparing to unpack .../177-libmount1_2.41.2-3_riscv64.deb ... Unpacking libmount1:riscv64 (2.41.2-3) ... Selecting previously unselected package libglib2.0-0t64:riscv64. Preparing to unpack .../178-libglib2.0-0t64_2.84.4-3_riscv64.deb ... 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Selecting previously unselected package libpangoft2-1.0-0:riscv64. Preparing to unpack .../196-libpangoft2-1.0-0_1.56.3-2_riscv64.deb ... Unpacking libpangoft2-1.0-0:riscv64 (1.56.3-2) ... Selecting previously unselected package libpangocairo-1.0-0:riscv64. Preparing to unpack .../197-libpangocairo-1.0-0_1.56.3-2_riscv64.deb ... Unpacking libpangocairo-1.0-0:riscv64 (1.56.3-2) ... Selecting previously unselected package libpaper2:amd64. Preparing to unpack .../198-libpaper2_2.2.5-0.3+b2_amd64.deb ... Unpacking libpaper2:amd64 (2.2.5-0.3+b2) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../199-libpaper-utils_2.2.5-0.3+b2_amd64.deb ... Unpacking libpaper-utils (2.2.5-0.3+b2) ... Selecting previously unselected package libpcre2-16-0:riscv64. Preparing to unpack .../200-libpcre2-16-0_10.46-1_riscv64.deb ... Unpacking libpcre2-16-0:riscv64 (10.46-1) ... Selecting previously unselected package libpcre2-32-0:riscv64. 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Adding 'diversion of /lib/riscv64-linux-gnu/libhistory.so.8 to /lib/riscv64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/riscv64-linux-gnu/libhistory.so.8.2 to /lib/riscv64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/riscv64-linux-gnu/libreadline.so.8 to /lib/riscv64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/riscv64-linux-gnu/libreadline.so.8.2 to /lib/riscv64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:riscv64 (8.3-3) ... Selecting previously unselected package libsharpyuv0:riscv64. Preparing to unpack .../206-libsharpyuv0_1.5.0-0.1_riscv64.deb ... Unpacking libsharpyuv0:riscv64 (1.5.0-0.1) ... Selecting previously unselected package libuuid1:riscv64. Preparing to unpack .../207-libuuid1_2.41.2-3_riscv64.deb ... Unpacking libuuid1:riscv64 (2.41.2-3) ... Selecting previously unselected package libsm6:riscv64. 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Selecting previously unselected package libwebp7:riscv64. Preparing to unpack .../214-libwebp7_1.5.0-0.1_riscv64.deb ... Unpacking libwebp7:riscv64 (1.5.0-0.1) ... Selecting previously unselected package libtiff6:riscv64. Preparing to unpack .../215-libtiff6_4.7.1-1_riscv64.deb ... Unpacking libtiff6:riscv64 (4.7.1-1) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../216-libtirpc-common_1.3.6+ds-1_all.deb ... Unpacking libtirpc-common (1.3.6+ds-1) ... Selecting previously unselected package libtirpc3t64:riscv64. Preparing to unpack .../217-libtirpc3t64_1.3.6+ds-1_riscv64.deb ... Adding 'diversion of /lib/riscv64-linux-gnu/libtirpc.so.3 to /lib/riscv64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/riscv64-linux-gnu/libtirpc.so.3.0.0 to /lib/riscv64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:riscv64 (1.3.6+ds-1) ... Selecting previously unselected package libxft2:riscv64. 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Unpacking xdg-utils (1.2.1-2) ... Selecting previously unselected package r-base-core:riscv64. Preparing to unpack .../225-r-base-core_4.5.1-1_riscv64.deb ... Unpacking r-base-core:riscv64 (4.5.1-1) ... Selecting previously unselected package r-mathlib:riscv64. Preparing to unpack .../226-r-mathlib_4.5.1-1_riscv64.deb ... Unpacking r-mathlib:riscv64 (4.5.1-1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:riscv64. Preparing to unpack .../227-sbuild-build-depends-main-dummy_0.invalid.0_riscv64.deb ... Unpacking sbuild-build-depends-main-dummy:riscv64 (0.invalid.0) ... Setting up libexpat1:amd64 (2.7.3-1) ... Setting up libexpat1:riscv64 (2.7.3-1) ... Setting up libpipeline1:amd64 (1.5.8-1) ... Setting up libgraphite2-3:riscv64 (1.3.14-9) ... Setting up libpixman-1-0:riscv64 (0.46.4-1) ... Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ... Setting up libsharpyuv0:riscv64 (1.5.0-0.1) ... Setting up libzstd1:riscv64 (1.5.7+dfsg-1.1) ... Setting up libxau6:riscv64 (1:1.0.11-1) ... Setting up libxdmcp6:riscv64 (1:1.1.5-1) ... Setting up libkeyutils1:riscv64 (1.6.3-6) ... Setting up libxcb1:riscv64 (1.17.0-2+b1) ... Setting up libzstd-dev:riscv64 (1.5.7+dfsg-1.1) ... Setting up bsdextrautils (2.41.2-3) ... Setting up liblzma5:riscv64 (5.8.1-1.1) ... Setting up libdatrie1:riscv64 (0.2.13-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libxcb-render0:riscv64 (1.17.0-2+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:amd64 (2.14.5+dfsg-0.2) ... Setting up libtirpc-common (1.3.6+ds-1) ... Setting up unzip (6.0-29) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:amd64 (1.1.0-2+b7) ... Setting up libbrotli1:riscv64 (1.1.0-2+b7) ... Setting up libmagic1t64:amd64 (1:5.46-5) ... Setting up x11-common (1:7.7+25) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block. Setting up libnghttp2-14:riscv64 (1.64.0-1.1+b1) ... Setting up libdeflate0:riscv64 (1.23-2) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up binutils-riscv64-linux-gnu (2.45-7) ... Setting up m4 (1.4.20-1) ... Setting up libevent-2.1-7t64:riscv64 (2.1.12-stable-10+b1) ... Setting up zlib1g:riscv64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:riscv64 (1:4.4.38-1) ... Setting up libxcb-shm0:riscv64 (1.17.0-2+b1) ... Setting up libcom-err2:riscv64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libgomp1:riscv64 (15.2.0-4) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libjbig0:riscv64 (2.1-6.1+b2) ... Setting up libpcre2-16-0:riscv64 (10.46-1) ... Setting up libfakeroot:amd64 (1.37.1.2-1) ... Setting up libelf1t64:amd64 (0.193-3) ... Setting up libkrb5support0:riscv64 (1.21.3-5) ... Setting up fakeroot (1.37.1.2-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libnettle8t64:riscv64 (3.10.2-1) ... Setting up zip (3.0-15) ... Setting up autotools-dev (20240727.1) ... Setting up libpcre2-32-0:riscv64 (10.46-1) ... Setting up libblas3:riscv64 (3.12.1-7) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/riscv64-linux-gnu/libblas.so.3 (libblas.so.3-riscv64-linux-gnu) in auto mode Setting up gcc-15-riscv64-linux-gnu-base:amd64 (15.2.0-4cross1) ... Setting up libpkgconf3:amd64 (1.8.1-4) ... Setting up libjpeg62-turbo:riscv64 (1:2.1.5-4) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libgmp10:riscv64 (2:6.3.0+dfsg-5) ... Setting up libfribidi0:riscv64 (1.0.16-3) ... Setting up libproc2-0:amd64 (2:4.0.4-9) ... Setting up libunistring5:amd64 (1.3-2) ... Setting up libunistring5:riscv64 (1.3-2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:amd64 (1.6.50-1) ... Setting up libpng16-16t64:riscv64 (1.6.50-1) ... Setting up libatomic1:riscv64 (15.2.0-4) ... Setting up libuuid1:riscv64 (2.41.2-3) ... Setting up libtcl8.6:riscv64 (8.6.17+dfsg-1) ... Setting up autopoint (0.23.1-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libpcre2-8-0:riscv64 (10.46-1) ... Setting up libncursesw6:amd64 (6.5+20250216-2) ... Setting up libk5crypto3:riscv64 (1.21.3-5) ... Setting up libgfortran5:riscv64 (15.2.0-4) ... Setting up autoconf (2.72-3.1) ... Setting up libtclap-dev:riscv64 (1.2.5-1+b2) ... Setting up libnghttp3-9:riscv64 (1.12.0-1) ... Setting up libwebp7:riscv64 (1.5.0-0.1) ... Setting up libnghttp3-dev:riscv64 (1.12.0-1) ... Setting up libdb5.3t64:riscv64 (5.3.28+dfsg2-9) ... Setting up liblzma-dev:riscv64 (5.8.1-1.1) ... Setting up libffi8:riscv64 (3.5.2-2) ... Setting up libpcre2-posix3:riscv64 (10.46-1) ... Setting up dwz (0.16-2) ... Setting up libhogweed6t64:riscv64 (3.10.2-1) ... Setting up sensible-utils (0.0.26) ... Setting up libcrypt-dev:riscv64 (1:4.4.38-1) ... Setting up libasan8:riscv64 (15.2.0-4) ... Setting up libuchardet0:amd64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up linux-libc-dev-riscv64-cross (6.12.38-1cross1) ... Setting up libtasn1-6:riscv64 (4.20.0-2) ... Setting up r-mathlib:riscv64 (4.5.1-1) ... Setting up cpp-15-riscv64-linux-gnu (15.2.0-4cross1) ... Setting up libc6-dev:riscv64 (2.41-12) ... Setting up libx11-6:riscv64 (2:1.8.12-1) ... Setting up libthai-data (0.1.29-2) ... Setting up libngtcp2-16:riscv64 (1.16.0-1) ... Setting up libc6-riscv64-cross (2.41-11cross1) ... Setting up libpaper2:amd64 (2.2.5-0.3+b2) ... Setting up libtsan2:riscv64 (15.2.0-4) ... Setting up gcc-15-cross-base (15.2.0-4cross1) ... Setting up libbz2-1.0:riscv64 (1.0.8-6) ... Setting up libatomic1-riscv64-cross (15.2.0-4cross1) ... Setting up libtasn1-6-dev:riscv64 (4.20.0-2) ... Setting up openssl (3.5.4-1) ... Setting up libdeflate-dev:riscv64 (1.23-2) ... Setting up cpp-riscv64-linux-gnu (4:15.2.0-4) ... Setting up readline-common (8.3-3) ... Setting up xdg-utils (1.2.1-2) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up libblkid1:riscv64 (2.41.2-3) ... Setting up libstdc++6:riscv64 (15.2.0-4) ... Setting up libbrotli-dev:riscv64 (1.1.0-2+b7) ... Setting up liblsan0:riscv64 (15.2.0-4) ... Setting up libitm1:riscv64 (15.2.0-4) ... Setting up libsvm3:riscv64 (3.24+ds-6.1) ... Setting up libtinfo6:riscv64 (6.5+20250216-2) ... Setting up libbz2-dev:riscv64 (1.0.8-6) ... Setting up libhtscodecs2:riscv64 (1.6.1-2) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libice6:riscv64 (2:1.1.1-1) ... Setting up liblapack3:riscv64 (3.12.1-7) ... update-alternatives: using /usr/lib/riscv64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/riscv64-linux-gnu/liblapack.so.3 (liblapack.so.3-riscv64-linux-gnu) in auto mode Setting up gettext (0.23.1-2+b1) ... Setting up liblerc4:riscv64 (4.0.0+ds-5) ... Setting up libpcre2-dev:riscv64 (10.46-1) ... Setting up libxrender1:riscv64 (1:0.9.12-1) ... Setting up libtool (2.5.4-5) ... Setting up libssl3t64:riscv64 (3.5.4-1) ... Setting up fontconfig-config (2.15.0-2.4) ... Setting up libxext6:riscv64 (2:1.3.4-1+b3) ... Setting up libitm1-riscv64-cross (15.2.0-4cross1) ... Setting up libidn2-0:riscv64 (2.3.8-4) ... Setting up libpaper-utils (2.2.5-0.3+b2) ... Setting up libngtcp2-dev:riscv64 (1.16.0-1) ... Setting up pkgconf:riscv64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libsasl2-modules-db:riscv64 (2.1.28+dfsg1-9) ... Setting up dh-autoreconf (21) ... Setting up libselinux1:riscv64 (3.8.1-1) ... Setting up libthai0:riscv64 (0.1.29-2+b1) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libunbound8:riscv64 (1.24.0-2) ... Setting up libgmpxx4ldbl:riscv64 (2:6.3.0+dfsg-5) ... Setting up libfreetype6:amd64 (2.13.3+dfsg-1) ... Setting up libfreetype6:riscv64 (2.13.3+dfsg-1) ... Setting up libgcc-s1-riscv64-cross (15.2.0-4cross1) ... Setting up libp11-kit0:riscv64 (0.25.9-2) ... Setting up comerr-dev:riscv64 (2.1-1.47.2-3+b3) ... Setting up libssl-dev:riscv64 (3.5.4-1) ... Setting up libsvm-dev:riscv64 (3.24+ds-6.1) ... Setting up ucf (3.0052) ... Setting up libidn2-dev:riscv64 (2.3.8-4) ... Setting up libsasl2-2:riscv64 (2.1.28+dfsg1-9) ... Setting up libreadline8t64:riscv64 (8.3-3) ... Setting up libubsan1:riscv64 (15.2.0-4) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up zlib1g-dev:riscv64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up groff-base (1.23.0-9) ... Setting up libmount1:riscv64 (2.41.2-3) ... Setting up libtiff6:riscv64 (4.7.1-1) ... Setting up libc6-dev-riscv64-cross (2.41-11cross1) ... Setting up libasan8-riscv64-cross (15.2.0-4cross1) ... Setting up libkrb5-3:riscv64 (1.21.3-5) ... Setting up libgomp1-riscv64-cross (15.2.0-4cross1) ... Setting up libxss1:riscv64 (1:1.2.3-1+b3) ... Setting up libfontconfig1:amd64 (2.15.0-2.4) ... Setting up libfontconfig1:riscv64 (2.15.0-2.4) ... Setting up libicu76:riscv64 (76.1-4) ... Setting up libssh2-1t64:riscv64 (1.11.1-1) ... Setting up libsm6:riscv64 (2:1.2.6-1) ... Setting up libldap2:riscv64 (2.6.10+dfsg-1) ... Setting up libp11-kit-dev:riscv64 (0.25.9-2) ... Setting up libgnutls30t64:riscv64 (3.8.10-2) ... Setting up libstdc++6-riscv64-cross (15.2.0-4cross1) ... Setting up libgnutls-openssl27t64:riscv64 (3.8.10-2) ... Setting up libnghttp2-dev:riscv64 (1.64.0-1.1+b1) ... Setting up fontconfig (2.15.0-2.4) ... Regenerating fonts cache... done. Setting up libxft2:riscv64 (2.3.6-1+b4) ... Setting up libgcc-15-dev:riscv64 (15.2.0-4) ... Setting up libgmp-dev:riscv64 (2:6.3.0+dfsg-5) ... Setting up nettle-dev:riscv64 (3.10.2-1) ... Setting up libubsan1-riscv64-cross (15.2.0-4cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:riscv64 (8.6.17-1) ... Setting up libpsl5t64:riscv64 (0.21.2-1.1+b1) ... Setting up liblsan0-riscv64-cross (15.2.0-4cross1) ... Setting up libtsan2-riscv64-cross (15.2.0-4cross1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libcairo2:riscv64 (1.18.4-1+b1) ... Setting up libpsl-dev:riscv64 (0.21.2-1.1+b1) ... Setting up libglib2.0-0t64:riscv64 (2.84.4-3) ... /var/lib/dpkg/info/libglib2.0-0t64:riscv64.postinst: 41: /usr/lib/riscv64-linux-gnu/glib-2.0/glib-compile-schemas: Exec format error /var/lib/dpkg/info/libglib2.0-0t64:riscv64.postinst: 42: /usr/lib/riscv64-linux-gnu/glib-2.0/gio-querymodules: Exec format error Setting up libstdc++-15-dev:riscv64 (15.2.0-4) ... Setting up libgcc-15-dev-riscv64-cross (15.2.0-4cross1) ... Setting up libgnutls-dane0t64:riscv64 (3.8.10-2) ... Setting up librtmp1:riscv64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libldap-dev:riscv64 (2.6.10+dfsg-1) ... Setting up libstdc++-15-dev-riscv64-cross (15.2.0-4cross1) ... Setting up libxt6t64:riscv64 (1:1.2.1-1.3) ... Setting up libgssapi-krb5-2:riscv64 (1.21.3-5) ... Setting up libssh2-1-dev:riscv64 (1.11.1-1) ... Setting up libharfbuzz0b:riscv64 (12.1.0-1) ... Setting up gcc-15-riscv64-linux-gnu (15.2.0-4cross1) ... Setting up libngtcp2-crypto-gnutls8:riscv64 (1.16.0-1) ... Setting up libgnutls28-dev:riscv64 (3.8.10-2) ... Setting up libcurl4t64:riscv64 (8.16.0-1) ... Setting up libtirpc3t64:riscv64 (1.3.6+ds-1) ... Setting up libpango-1.0-0:riscv64 (1.56.3-2) ... Setting up libcurl3t64-gnutls:riscv64 (8.16.0-1) ... Setting up debhelper (13.28) ... Setting up libngtcp2-crypto-gnutls-dev:riscv64 (1.16.0-1) ... Setting up gcc-riscv64-linux-gnu (4:15.2.0-4) ... Setting up libgssrpc4t64:riscv64 (1.21.3-5) ... Setting up librtmp-dev:riscv64 (2.4+20151223.gitfa8646d.1-3) ... Setting up g++-15-riscv64-linux-gnu (15.2.0-4cross1) ... Setting up libhts3t64:riscv64 (1.22.1+ds2-1) ... Setting up libpangoft2-1.0-0:riscv64 (1.56.3-2) ... Setting up libpangocairo-1.0-0:riscv64 (1.56.3-2) ... Setting up libkadm5clnt-mit12:riscv64 (1.21.3-5) ... Setting up libkdb5-10t64:riscv64 (1.21.3-5) ... Setting up g++-riscv64-linux-gnu (4:15.2.0-4) ... Setting up r-base-core:riscv64 (4.5.1-1) ... Creating config file /etc/R/Renviron with new version Setting up libkadm5srv-mit12:riscv64 (1.21.3-5) ... Setting up krb5-multidev:riscv64 (1.21.3-5) ... Setting up crossbuild-essential-riscv64 (12.12) ... Setting up libkrb5-dev:riscv64 (1.21.3-5) ... Setting up libcurl4-gnutls-dev:riscv64 (8.16.0-1) ... Setting up libhts-dev:riscv64 (1.22.1+ds2-1) ... Setting up sbuild-build-depends-main-dummy:riscv64 (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (riscv64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64) Toolchain package versions: binutils_2.45-7 dpkg-dev_1.22.21 g++-15_15.2.0-4 gcc-15_15.2.0-4 libc6-dev_2.41-12 libstdc++-15-dev_15.2.0-4 libstdc++-15-dev-riscv64-cross_15.2.0-4cross1 libstdc++6_15.2.0-4 libstdc++6-riscv64-cross_15.2.0-4cross1 linux-libc-dev_6.16.9-1 Package versions: apt_3.1.7 apt-utils_3.1.7 autoconf_2.72-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.7 bash_5.3-1 binutils_2.45-7 binutils-common_2.45-7 binutils-riscv64-linux-gnu_2.45-7 binutils-x86-64-linux-gnu_2.45-7 bsdextrautils_2.41.2-3 bsdutils_1:2.41.2-3 build-essential_12.12 bzip2_1.0.8-6 ca-certificates_20250419 comerr-dev_2.1-1.47.2-3+b3 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-4 cpp-15-riscv64-linux-gnu_15.2.0-4cross1 cpp-15-x86-64-linux-gnu_15.2.0-4 cpp-riscv64-linux-gnu_4:15.2.0-4 cpp-x86-64-linux-gnu_4:15.2.0-4 crossbuild-essential-riscv64_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_21 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.10-4 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 fakeroot_1.37.1.2-1 file_1:5.46-5 findutils_4.10.0-3 fontconfig_2.15.0-2.4 fontconfig-config_2.15.0-2.4 fonts-dejavu-core_2.37-8 fonts-dejavu-mono_2.37-8 g++_4:15.2.0-4 g++-15_15.2.0-4 g++-15-riscv64-linux-gnu_15.2.0-4cross1 g++-15-x86-64-linux-gnu_15.2.0-4 g++-riscv64-linux-gnu_4:15.2.0-4 g++-x86-64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-15_15.2.0-4 gcc-15-base_15.2.0-4 gcc-15-cross-base_15.2.0-4cross1 gcc-15-riscv64-linux-gnu_15.2.0-4cross1 gcc-15-riscv64-linux-gnu-base_15.2.0-4cross1 gcc-15-x86-64-linux-gnu_15.2.0-4 gcc-riscv64-linux-gnu_4:15.2.0-4 gcc-x86-64-linux-gnu_4:15.2.0-4 gettext_0.23.1-2+b1 gettext-base_0.23.1-2+b1 grep_3.12-1 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 krb5-multidev_1.21.3-5 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.1.7 libarchive-zip-perl_1.68-1 libasan8_15.2.0-4 libasan8-riscv64-cross_15.2.0-4cross1 libatomic1_15.2.0-4 libatomic1-riscv64-cross_15.2.0-4cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1 libbinutils_2.45-7 libblas3_3.12.1-7 libblkid1_2.41.2-3 libbrotli-dev_1.1.0-2+b7 libbrotli1_1.1.0-2+b7 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libc6-dev-riscv64-cross_2.41-11cross1 libc6-riscv64-cross_2.41-11cross1 libcairo2_1.18.4-1+b1 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-4 libcom-err2_1.47.2-3+b3 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.45-7 libctf0_2.45-7 libcurl3t64-gnutls_8.16.0-1 libcurl4-gnutls-dev_8.16.0-1 libcurl4t64_8.16.0-1 libdatrie1_0.2.13-4 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.280 libdebhelper-perl_13.28 libdeflate-dev_1.23-2 libdeflate0_1.23-2 libdpkg-perl_1.22.21 libelf1t64_0.193-3 libevent-2.1-7t64_2.1.12-stable-10+b1 libexpat1_2.7.3-1 libfakeroot_1.37.1.2-1 libffi8_3.5.2-2 libfile-stripnondeterminism-perl_1.15.0-1 libfontconfig1_2.15.0-2.4 libfreetype6_2.13.3+dfsg-1 libfribidi0_1.0.16-3 libgcc-15-dev_15.2.0-4 libgcc-15-dev-riscv64-cross_15.2.0-4cross1 libgcc-s1_15.2.0-4 libgcc-s1-riscv64-cross_15.2.0-4cross1 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgfortran5_15.2.0-4 libglib2.0-0t64_2.84.4-3 libgmp-dev_2:6.3.0+dfsg-5 libgmp10_2:6.3.0+dfsg-5 libgmpxx4ldbl_2:6.3.0+dfsg-5 libgnutls-dane0t64_3.8.10-2 libgnutls-openssl27t64_3.8.10-2 libgnutls28-dev_3.8.10-2 libgnutls30t64_3.8.10-2 libgomp1_15.2.0-4 libgomp1-riscv64-cross_15.2.0-4cross1 libgprofng0_2.45-7 libgraphite2-3_1.3.14-9 libgssapi-krb5-2_1.21.3-5 libgssrpc4t64_1.21.3-5 libharfbuzz0b_12.1.0-1 libhogweed6t64_3.10.2-1 libhts-dev_1.22.1+ds2-1 libhts3t64_1.22.1+ds2-1 libhtscodecs2_1.6.1-2 libhwasan0_15.2.0-4 libice6_2:1.1.1-1 libicu76_76.1-4 libidn2-0_2.3.8-4 libidn2-dev_2.3.8-4 libisl23_0.27-1 libitm1_15.2.0-4 libitm1-riscv64-cross_15.2.0-4cross1 libjansson4_2.14-2+b3 libjbig0_2.1-6.1+b2 libjpeg62-turbo_1:2.1.5-4 libk5crypto3_1.21.3-5 libkadm5clnt-mit12_1.21.3-5 libkadm5srv-mit12_1.21.3-5 libkdb5-10t64_1.21.3-5 libkeyutils1_1.6.3-6 libkrb5-3_1.21.3-5 libkrb5-dev_1.21.3-5 libkrb5support0_1.21.3-5 liblapack3_3.12.1-7 libldap-dev_2.6.10+dfsg-1 libldap2_2.6.10+dfsg-1 liblerc4_4.0.0+ds-5 liblsan0_15.2.0-4 liblsan0-riscv64-cross_15.2.0-4cross1 liblz4-1_1.10.0-4 liblzma-dev_5.8.1-1.1 liblzma5_5.8.1-1.1 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.2-3 libmpc3_1.3.1-2 libmpfr6_4.2.2-2 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.2-1 libnghttp2-14_1.64.0-1.1+b1 libnghttp2-dev_1.64.0-1.1+b1 libnghttp3-9_1.12.0-1 libnghttp3-dev_1.12.0-1 libngtcp2-16_1.16.0-1 libngtcp2-crypto-gnutls-dev_1.16.0-1 libngtcp2-crypto-gnutls8_1.16.0-1 libngtcp2-dev_1.16.0-1 libp11-kit-dev_0.25.9-2 libp11-kit0_0.25.9-2 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpango-1.0-0_1.56.3-2 libpangocairo-1.0-0_1.56.3-2 libpangoft2-1.0-0_1.56.3-2 libpaper-utils_2.2.5-0.3+b2 libpaper2_2.2.5-0.3+b2 libpcre2-16-0_10.46-1 libpcre2-32-0_10.46-1 libpcre2-8-0_10.46-1 libpcre2-dev_10.46-1 libpcre2-posix3_10.46-1 libperl5.40_5.40.1-6 libpipeline1_1.5.8-1 libpixman-1-0_0.46.4-1 libpkgconf3_1.8.1-4 libpng16-16t64_1.6.50-1 libproc2-0_2:4.0.4-9 libpsl-dev_0.21.2-1.1+b1 libpsl5t64_0.21.2-1.1+b1 libquadmath0_15.2.0-4 libreadline8t64_8.3-3 librtmp-dev_2.4+20151223.gitfa8646d.1-3 librtmp1_2.4+20151223.gitfa8646d.1-3 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsemanage-common_3.8.1-1 libsemanage2_3.8.1-1 libsepol2_3.8.1-1 libsframe2_2.45-7 libsharpyuv0_1.5.0-0.1 libsm6_2:1.2.6-1 libsmartcols1_2.41.2-3 libssh2-1-dev_1.11.1-1 libssh2-1t64_1.11.1-1 libssl-dev_3.5.4-1 libssl3t64_3.5.4-1 libstdc++-15-dev_15.2.0-4 libstdc++-15-dev-riscv64-cross_15.2.0-4cross1 libstdc++6_15.2.0-4 libstdc++6-riscv64-cross_15.2.0-4cross1 libsvm-dev_3.24+ds-6.1 libsvm3_3.24+ds-6.1 libsystemd0_258-1 libtasn1-6_4.20.0-2 libtasn1-6-dev_4.20.0-2 libtcl8.6_8.6.17+dfsg-1 libtclap-dev_1.2.5-1+b2 libtext-charwidth-perl_0.04-11+b4 libtext-wrapi18n-perl_0.06-10 libthai-data_0.1.29-2 libthai0_0.1.29-2+b1 libtiff6_4.7.1-1 libtinfo6_6.5+20250216-2 libtirpc-common_1.3.6+ds-1 libtirpc3t64_1.3.6+ds-1 libtk8.6_8.6.17-1 libtool_2.5.4-5 libtsan2_15.2.0-4 libtsan2-riscv64-cross_15.2.0-4cross1 libubsan1_15.2.0-4 libubsan1-riscv64-cross_15.2.0-4cross1 libuchardet0_0.0.8-2 libudev1_258-1 libunbound8_1.24.0-2 libunistring5_1.3-2 libuuid1_2.41.2-3 libwebp7_1.5.0-0.1 libx11-6_2:1.8.12-1 libx11-data_2:1.8.12-1 libxau6_1:1.0.11-1 libxcb-render0_1.17.0-2+b1 libxcb-shm0_1.17.0-2+b1 libxcb1_1.17.0-2+b1 libxdmcp6_1:1.1.5-1 libxext6_2:1.3.4-1+b3 libxft2_2.3.6-1+b4 libxml2-16_2.14.5+dfsg-0.2 libxrender1_1:0.9.12-1 libxss1_1:1.2.3-1+b3 libxt6t64_1:1.2.1-1.3 libxxhash0_0.8.3-2 libzstd-dev_1.5.7+dfsg-1.1 libzstd1_1.5.7+dfsg-1.1 linux-libc-dev_6.16.9-1 linux-libc-dev-riscv64-cross_6.12.38-1cross1 login_1:4.16.0-2+really2.41.2-3 login.defs_1:4.18.0-1 m4_1.4.20-1 make_4.4.1-2 man-db_2.13.1-1 mawk_1.3.4.20250131-1 mount_2.41.2-3 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 nettle-dev_3.10.2-1 openssl_3.5.4-1 openssl-provider-legacy_3.5.4-1 passwd_1:4.18.0-1 patch_2.8-2 perl_5.40.1-6 perl-base_5.40.1-6 perl-modules-5.40_5.40.1-6 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 procps_2:4.0.4-9 r-base-core_4.5.1-1 r-mathlib_4.5.1-1 readline-common_8.3-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.26 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 tzdata_2025b-5 ucf_3.0052 unzip_6.0-29 util-linux_2.41.2-3 x11-common_1:7.7+25 xdg-utils_1.2.1-2 xz-utils_5.8.1-1.1 zip_3.0-15 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: vt Binary: vt, vt-examples Architecture: any all Version: 0.57721+ds-3 Maintainer: Debian Med Packaging Team Uploaders: Antoni Villalonga Homepage: https://genome.sph.umich.edu/wiki/Vt Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/vt Vcs-Git: https://salsa.debian.org/med-team/vt.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), zlib1g-dev, libbz2-dev, liblzma-dev, libcurl4-gnutls-dev, libssl-dev, libdeflate-dev, libhts-dev, libpcre2-dev, libsvm-dev, libtclap-dev, r-mathlib, r-base-core Package-List: vt deb science optional arch=any vt-examples deb science optional arch=all Checksums-Sha1: 8d1f794a59a8497084272acc1d6d6d8e5557c961 18574416 vt_0.57721+ds.orig.tar.xz 883ef66dd524310822a2ca0b1e9355515edb7f69 8092 vt_0.57721+ds-3.debian.tar.xz Checksums-Sha256: ce6e49949e5a61cd8e06ebac2dea1db94e2df78881350aba1cd178a1e4f73865 18574416 vt_0.57721+ds.orig.tar.xz 52295d9de36ef140fd0959a1220b85b7acd4e5c34e69a3b65abe56f9a2a3a95a 8092 vt_0.57721+ds-3.debian.tar.xz Files: d431231e862dc0adaa30457001f064f0 18574416 vt_0.57721+ds.orig.tar.xz 2ffd195b13c6e4b77b0d6673787fe57d 8092 vt_0.57721+ds-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl+qvC4RHHRpbGxlQGRl 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vt_0.57721+ds-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile dpkg-source: info: applying fix-spelling dpkg-source: info: applying test-fail-on-error dpkg-source: info: applying 0001-updated-faidx_fetch_uc_seq.patch dpkg-source: info: applying 0002-hts-1.11.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.riscv64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.DPoW9FhZof/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-d599f9c9-acdb-4429-bcbe-a36bf3d9d0f3 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ariscv64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package vt dpkg-buildpackage: info: source version 0.57721+ds-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Antoni Villalonga dpkg-architecture: warning: specified GNU system type riscv64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture riscv64 debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -rf vt ahmm.o align.o allele.o annotate_1000g.o annotate_dbsnp_rsid.o annotate_indels.o annotate_indels2.o annotate_regions.o annotate_variants.o annotate_vntrs.o augmented_bam_record.o bcf_genotyping_buffered_reader.o bcf_single_genotyping_buffered_reader.o bam_ordered_reader.o bcf_ordered_reader.o bcf_ordered_writer.o bcf_synced_reader.o bed.o candidate_motif_picker.o candidate_region_extractor.o cat.o chmm.o complex_genotyping_record.o compute_concordance.o compute_features.o compute_features2.o compute_rl_dist.o config.o consolidate_multiallelics.o consolidate_vntrs.o consolidate.o construct_probes.o decompose.o decompose2.o decompose_blocksub.o discover.o duplicate.o estimate.o estimator.o extract_vntrs.o filter.o filter_overlap.o flank_detector.o fuzzy_aligner.o fuzzy_partition.o gencode.o genome_interval.o genotype.o genotyping_record.o ghmm.o hts_utils.o hfilter.o indel_annotator.o indel_genotyping_record.o index.o info2tab.o interval_tree.o interval.o lfhmm.o lhmm.o lhmm1.o liftover.o log_tool.o merge.o merge_candidate_variants.o merge_genotypes.o milk_filter.o motif_tree.o motif_map.o multi_partition.o multiallelics_consolidator.o needle.o normalize.o nuclear_pedigree.o ordered_bcf_overlap_matcher.o ordered_region_overlap_matcher.o partition.o paste.o paste_and_compute_features_sequential.o paste_genotypes.o pedigree.o peek.o pileup.o pregex.o profile_afs.o profile_chm1.o profile_chrom.o profile_fic_hwe.o profile_hwe.o profile_indels.o profile_len.o profile_mendelian.o profile_na12878.o profile_snps.o profile_vntrs.o program.o read_filter.o reference_sequence.o rfhmm.o rfhmm_x.o rminfo.o seq.o set_ref.o snp_genotyping_record.o sort.o subset.o sv_tree.o svm_train.o svm_predict.o tbx_ordered_reader.o test.o trio.o union_variants.o uniq.o utils.o validate.o variant.o variant_manip.o variant_filter.o view.o vntr.o vntr_annotator.o vntr_consolidator.o vntr_extractor.o vntr_genotyping_record.o vntr_tree.o vntrize.o wdp_ahmm.o main.o make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 INSTALL="install --strip-program=true" PKG_CONFIG=riscv64-linux-gnu-pkg-config CXX=riscv64-linux-gnu-g\+\+ CC=riscv64-linux-gnu-gcc make[1]: Entering directory '/<>' riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o ahmm.o -c ahmm.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o align.o -c align.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o allele.o -c allele.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_1000g.o -c annotate_1000g.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_dbsnp_rsid.o -c annotate_dbsnp_rsid.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_indels.o -c annotate_indels.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_indels2.o -c annotate_indels2.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_regions.o -c annotate_regions.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_variants.o -c annotate_variants.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o annotate_vntrs.o -c annotate_vntrs.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o augmented_bam_record.o -c augmented_bam_record.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bcf_genotyping_buffered_reader.o -c bcf_genotyping_buffered_reader.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bcf_single_genotyping_buffered_reader.o -c bcf_single_genotyping_buffered_reader.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bam_ordered_reader.o -c bam_ordered_reader.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bcf_ordered_reader.o -c bcf_ordered_reader.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bcf_ordered_writer.o -c bcf_ordered_writer.cpp bcf_ordered_writer.cpp: In member function ‘void BCFOrderedWriter::write(bcf1_t*)’: bcf_ordered_writer.cpp:162:114: warning: format ‘%d’ expects argument of type ‘int’, but argument 8 has type ‘hts_pos_t’ {aka ‘long int’} [-Wformat=] 162 | fprintf(stderr, "[%s:%d %s] Might not be sorted for window size %d at current record %s:%d < %d (%d [last record] - %d), please increase window size to at least %d.\n", | ~^ | | | int | %ld bcf_ordered_writer.cpp:162:123: warning: format ‘%d’ expects argument of type ‘int’, but argument 10 has type ‘hts_pos_t’ {aka ‘long int’} [-Wformat=] 162 | fprintf(stderr, "[%s:%d %s] Might not be sorted for window size %d at current record %s:%d < %d (%d [last record] - %d), please increase window size to at least %d.\n", | ~^ | | | int | %ld bcf_ordered_writer.cpp:162:187: warning: format ‘%d’ expects argument of type ‘int’, but argument 12 has type ‘hts_pos_t’ {aka ‘long int’} [-Wformat=] 162 | fprintf(stderr, "[%s:%d %s] Might not be sorted for window size %d at current record %s:%d < %d (%d [last record] - %d), please increase window size to at least %d.\n", | ~^ | | | int | %ld bcf_ordered_writer.cpp: In member function ‘void BCFOrderedWriter::write_hdr()’: bcf_ordered_writer.cpp:129:18: warning: ignoring return value of ‘int bcf_hdr_write(htsFile*, bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | bcf_hdr_write(file, hdr); | ~~~~~~~~~~~~~^~~~~~~~~~~ bcf_ordered_writer.cpp: In member function ‘void BCFOrderedWriter::write(bcf1_t*)’: bcf_ordered_writer.cpp:195:18: warning: ignoring return value of ‘int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 195 | bcf_write(file, hdr, v); | ~~~~~~~~~^~~~~~~~~~~~~~ bcf_ordered_writer.cpp: In member function ‘void BCFOrderedWriter::flush(bool)’: bcf_ordered_writer.cpp:245:22: warning: ignoring return value of ‘int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 245 | bcf_write(file, hdr, buffer.back()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ bcf_ordered_writer.cpp:261:30: warning: ignoring return value of ‘int bcf_write(htsFile*, bcf_hdr_t*, bcf1_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 261 | bcf_write(file, hdr, buffer.back()); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bcf_synced_reader.o -c bcf_synced_reader.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o bed.o -c bed.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o candidate_motif_picker.o -c candidate_motif_picker.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o candidate_region_extractor.o -c candidate_region_extractor.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o cat.o -c cat.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o chmm.o -c chmm.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o complex_genotyping_record.o -c complex_genotyping_record.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o compute_concordance.o -c compute_concordance.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o compute_features.o -c compute_features.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o compute_features2.o -c compute_features2.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o compute_rl_dist.o -c compute_rl_dist.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o config.o -c config.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o consolidate_multiallelics.o -c consolidate_multiallelics.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o consolidate_vntrs.o -c consolidate_vntrs.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o consolidate.o -c consolidate.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o construct_probes.o -c construct_probes.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o decompose.o -c decompose.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o decompose2.o -c decompose2.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o decompose_blocksub.o -c decompose_blocksub.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o discover.o -c discover.cpp In file included from bcf_ordered_reader.h:27, from program.h:32, from discover.h:27, from discover.cpp:24: discover.cpp: In member function ‘bool {anonymous}::Igor::filter_read(bam1_t*)’: hts_utils.h:124:40: warning: narrowing conversion of ‘(s->bam1_t::core.bam1_core_t::pos + 1)’ from ‘hts_pos_t’ {aka ‘long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing] 124 | #define bam_get_pos1(s) ((s)->core.pos + 1) | ~~~~~~~~~~~~~~~^~~~ discover.cpp:355:45: note: in expansion of macro ‘bam_get_pos1’ 355 | kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1}; | ^~~~~~~~~~~~ discover.cpp:355:95: warning: narrowing conversion of ‘(((s->bam1_t::core.bam1_core_t::pos + 1) + ((hts_pos_t)s->bam1_t::core.bam1_core_t::l_qseq)) - 1)’ from ‘hts_pos_t’ {aka ‘long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing] 355 | kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1}; riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o duplicate.o -c duplicate.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o estimate.o -c estimate.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o estimator.o -c estimator.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o extract_vntrs.o -c extract_vntrs.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o filter.o -c filter.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o filter_overlap.o -c filter_overlap.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o flank_detector.o -c flank_detector.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o fuzzy_aligner.o -c fuzzy_aligner.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o fuzzy_partition.o -c fuzzy_partition.cpp fuzzy_partition.cpp: In member function ‘void {anonymous}::Igor::initialize()’: fuzzy_partition.cpp:153:21: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 153 | bcf_hdr_sync(odr->hdr); | ~~~~~~~~~~~~^~~~~~~~~~ riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o gencode.o -c gencode.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o genome_interval.o -c genome_interval.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o genotype.o -c genotype.cpp In file included from bam_ordered_reader.h:27, from genotype.h:27, from genotype.cpp:24: genotype.cpp: In member function ‘bool {anonymous}::Igor::filter_read(bam1_t*)’: hts_utils.h:124:40: warning: narrowing conversion of ‘(s->bam1_t::core.bam1_core_t::pos + 1)’ from ‘hts_pos_t’ {aka ‘long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing] 124 | #define bam_get_pos1(s) ((s)->core.pos + 1) | ~~~~~~~~~~~~~~~^~~~ genotype.cpp:304:45: note: in expansion of macro ‘bam_get_pos1’ 304 | kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1}; | ^~~~~~~~~~~~ genotype.cpp:304:95: warning: narrowing conversion of ‘(((s->bam1_t::core.bam1_core_t::pos + 1) + ((hts_pos_t)s->bam1_t::core.bam1_core_t::l_qseq)) - 1)’ from ‘hts_pos_t’ {aka ‘long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing] 304 | kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1}; riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o genotyping_record.o -c genotyping_record.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o ghmm.o -c ghmm.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o hts_utils.o -c hts_utils.cpp hts_utils.cpp: In function ‘void bcf_hdr_print(bcf_hdr_t*)’: hts_utils.cpp:406:33: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 406 | if ( h->dirty ) bcf_hdr_sync(h); | ~~~~~~~~~~~~^~~ riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o hfilter.o -c hfilter.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o indel_annotator.o -c indel_annotator.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o indel_genotyping_record.o -c indel_genotyping_record.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o index.o -c index.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o info2tab.o -c info2tab.cpp info2tab.cpp: In member function ‘void {anonymous}::Igor::info2tab()’: info2tab.cpp:278:32: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘hts_pos_t’ {aka ‘long int’} [-Wformat=] 278 | fprintf(out, "%s\t%d", bcf_get_chrom(h, v), bcf_get_pos1(v)); | ~^ | | | int | %ld riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o interval_tree.o -c interval_tree.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o interval.o -c interval.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o lfhmm.o -c lfhmm.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o lhmm.o -c lhmm.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o lhmm1.o -c lhmm1.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o liftover.o -c liftover.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o log_tool.o -c log_tool.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o merge.o -c merge.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o merge_candidate_variants.o -c merge_candidate_variants.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o merge_genotypes.o -c merge_genotypes.cpp merge_genotypes.cpp: In member function ‘void {anonymous}::Igor::initialize()’: merge_genotypes.cpp:215:21: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 215 | bcf_hdr_sync(odw->hdr); | ~~~~~~~~~~~~^~~~~~~~~~ riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o milk_filter.o -c milk_filter.cpp milk_filter.cpp: In member function ‘void {anonymous}::Igor::milk_filter()’: milk_filter.cpp:456:53: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘hts_pos_t’ {aka ‘long int’} [-Wformat=] 456 | fprintf(stderr,"Processing %d variants at %s:%d\n", nread + 1, bcf_seqname(odw->hdr,nv), nv->pos); | ~^ ~~~~~~~ | | | | int hts_pos_t {aka long int} | %ld riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o motif_tree.o -c motif_tree.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o motif_map.o -c motif_map.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o multi_partition.o -c multi_partition.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o multiallelics_consolidator.o -c multiallelics_consolidator.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o needle.o -c needle.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o normalize.o -c normalize.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o nuclear_pedigree.o -c nuclear_pedigree.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o ordered_bcf_overlap_matcher.o -c ordered_bcf_overlap_matcher.cpp ordered_bcf_overlap_matcher.cpp: In constructor ‘OrderedBCFOverlapMatcher::OrderedBCFOverlapMatcher(std::string&, std::vector&)’: ordered_bcf_overlap_matcher.cpp:34:17: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 34 | bcf_hdr_sync(odr->hdr); | ~~~~~~~~~~~~^~~~~~~~~~ ordered_bcf_overlap_matcher.cpp: In constructor ‘OrderedBCFOverlapMatcher::OrderedBCFOverlapMatcher(std::string&, std::vector&, std::string)’: ordered_bcf_overlap_matcher.cpp:52:17: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 52 | bcf_hdr_sync(odr->hdr); | ~~~~~~~~~~~~^~~~~~~~~~ riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o ordered_region_overlap_matcher.o -c ordered_region_overlap_matcher.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o partition.o -c partition.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o paste.o -c paste.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o paste_and_compute_features_sequential.o -c paste_and_compute_features_sequential.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o paste_genotypes.o -c paste_genotypes.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o pedigree.o -c pedigree.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o peek.o -c peek.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o pileup.o -c pileup.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o pregex.o -c pregex.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_afs.o -c profile_afs.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_chm1.o -c profile_chm1.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_chrom.o -c profile_chrom.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_fic_hwe.o -c profile_fic_hwe.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_hwe.o -c profile_hwe.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_indels.o -c profile_indels.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_len.o -c profile_len.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_mendelian.o -c profile_mendelian.cpp profile_mendelian.cpp: In member function ‘void {anonymous}::Igor::initialize()’: profile_mendelian.cpp:191:25: warning: ignoring return value of ‘int bcf_hdr_sync(bcf_hdr_t*)’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 191 | bcf_hdr_sync(odw->hdr); | ~~~~~~~~~~~~^~~~~~~~~~ riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_na12878.o -c profile_na12878.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_snps.o -c profile_snps.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o profile_vntrs.o -c profile_vntrs.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o program.o -c program.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o read_filter.o -c read_filter.cpp In file included from read_filter.h:30, from read_filter.cpp:24: read_filter.cpp: In member function ‘bool ReadFilter::filter_read(bam_hdr_t*, bam1_t*)’: hts_utils.h:124:40: warning: narrowing conversion of ‘(s->bam1_t::core.bam1_core_t::pos + 1)’ from ‘hts_pos_t’ {aka ‘long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing] 124 | #define bam_get_pos1(s) ((s)->core.pos + 1) | ~~~~~~~~~~~~~~~^~~~ read_filter.cpp:95:41: note: in expansion of macro ‘bam_get_pos1’ 95 | kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1}; | ^~~~~~~~~~~~ read_filter.cpp:95:91: warning: narrowing conversion of ‘(((s->bam1_t::core.bam1_core_t::pos + 1) + ((hts_pos_t)s->bam1_t::core.bam1_core_t::l_qseq)) - 1)’ from ‘hts_pos_t’ {aka ‘long int’} to ‘int32_t’ {aka ‘int’} [-Wnarrowing] 95 | kh_val(reads, k) = {bam_get_pos1(s), bam_get_pos1(s)+bam_get_l_qseq(s)-1}; riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o reference_sequence.o -c reference_sequence.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o rfhmm.o -c rfhmm.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o rfhmm_x.o -c rfhmm_x.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o rminfo.o -c rminfo.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o seq.o -c seq.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o set_ref.o -c set_ref.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o snp_genotyping_record.o -c snp_genotyping_record.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o sort.o -c sort.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o subset.o -c subset.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o sv_tree.o -c sv_tree.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o svm_train.o -c svm_train.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o svm_predict.o -c svm_predict.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o tbx_ordered_reader.o -c tbx_ordered_reader.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o test.o -c test.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o trio.o -c trio.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o union_variants.o -c union_variants.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o uniq.o -c uniq.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o utils.o -c utils.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o validate.o -c validate.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o variant.o -c variant.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o variant_manip.o -c variant_manip.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o variant_filter.o -c variant_filter.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o view.o -c view.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr.o -c vntr.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr_annotator.o -c vntr_annotator.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr_consolidator.o -c vntr_consolidator.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr_extractor.o -c vntr_extractor.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr_genotyping_record.o -c vntr_genotyping_record.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntr_tree.o -c vntr_tree.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vntrize.o -c vntrize.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o wdp_ahmm.o -c wdp_ahmm.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o main.o -c main.cpp riscv64-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -pipe -std=c++0x -O3 -I. -I/usr/share/R/include -D__STDC_LIMIT_MACROS -DPCRE2_CODE_UNIT_WIDTH=8 -o vt ahmm.o align.o allele.o annotate_1000g.o annotate_dbsnp_rsid.o annotate_indels.o annotate_indels2.o annotate_regions.o annotate_variants.o annotate_vntrs.o augmented_bam_record.o bcf_genotyping_buffered_reader.o bcf_single_genotyping_buffered_reader.o bam_ordered_reader.o bcf_ordered_reader.o bcf_ordered_writer.o bcf_synced_reader.o bed.o candidate_motif_picker.o candidate_region_extractor.o cat.o chmm.o complex_genotyping_record.o compute_concordance.o compute_features.o compute_features2.o compute_rl_dist.o config.o consolidate_multiallelics.o consolidate_vntrs.o consolidate.o construct_probes.o decompose.o decompose2.o decompose_blocksub.o discover.o duplicate.o estimate.o estimator.o extract_vntrs.o filter.o filter_overlap.o flank_detector.o fuzzy_aligner.o fuzzy_partition.o gencode.o genome_interval.o genotype.o genotyping_record.o ghmm.o hts_utils.o hfilter.o indel_annotator.o indel_genotyping_record.o index.o info2tab.o interval_tree.o interval.o lfhmm.o lhmm.o lhmm1.o liftover.o log_tool.o merge.o merge_candidate_variants.o merge_genotypes.o milk_filter.o motif_tree.o motif_map.o multi_partition.o multiallelics_consolidator.o needle.o normalize.o nuclear_pedigree.o ordered_bcf_overlap_matcher.o ordered_region_overlap_matcher.o partition.o paste.o paste_and_compute_features_sequential.o paste_genotypes.o pedigree.o peek.o pileup.o pregex.o profile_afs.o profile_chm1.o profile_chrom.o profile_fic_hwe.o profile_hwe.o profile_indels.o profile_len.o profile_mendelian.o profile_na12878.o profile_snps.o profile_vntrs.o program.o read_filter.o reference_sequence.o rfhmm.o rfhmm_x.o rminfo.o seq.o set_ref.o snp_genotyping_record.o sort.o subset.o sv_tree.o svm_train.o svm_predict.o tbx_ordered_reader.o test.o trio.o union_variants.o uniq.o utils.o validate.o variant.o variant_manip.o variant_filter.o view.o vntr.o vntr_annotator.o vntr_consolidator.o vntr_extractor.o vntr_genotyping_record.o vntr_tree.o vntrize.o wdp_ahmm.o main.o -lz -lpthread -lbz2 -llzma -lcurl -lcrypto -lhts -lpcre2-8 -lsvm -lRmath -lR make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-riscv64-lp64d.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-riscv64-lp64d.so.1.usr-is-merged dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'vt' in '../vt_0.57721+ds-3_riscv64.deb'. dpkg-deb: building package 'vt-dbgsym' in '../vt-dbgsym_0.57721+ds-3_riscv64.deb'. dpkg-genbuildinfo --build=any -O../vt_0.57721+ds-3_riscv64.buildinfo dpkg-genchanges --build=any -O../vt_0.57721+ds-3_riscv64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-10-03T14:06:55Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ -------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ vt_0.57721+ds-3_riscv64.changes: -------------------------------- Format: 1.8 Date: Mon, 09 Nov 2020 09:29:40 +0100 Source: vt Binary: vt vt-dbgsym Built-For-Profiles: cross nocheck Architecture: riscv64 Version: 0.57721+ds-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Antoni Villalonga Description: vt - toolset for short variant discovery in genetic sequence data Changes: vt (0.57721+ds-3) unstable; urgency=medium . * patch 0001: Get rid of commented code * Add patch 0002-hts-1.11.patch Checksums-Sha1: 056dc10d9a6779b213170158539cad9f5d6c1cea 33746964 vt-dbgsym_0.57721+ds-3_riscv64.deb 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riscv64 Version: 0.57721+ds-3 Checksums-Md5: 2ea05158b5a6329db28548de62a1f889 33746964 vt-dbgsym_0.57721+ds-3_riscv64.deb e834ab04372fae9e10d732ae8ab4d228 832836 vt_0.57721+ds-3_riscv64.deb Checksums-Sha1: 056dc10d9a6779b213170158539cad9f5d6c1cea 33746964 vt-dbgsym_0.57721+ds-3_riscv64.deb 62cf32c6b622a1794f9cba32bc19b21512be6c24 832836 vt_0.57721+ds-3_riscv64.deb Checksums-Sha256: c43264859f08dc2a4e5ebba9df477c38b41916b25de5364d47903cb119660158 33746964 vt-dbgsym_0.57721+ds-3_riscv64.deb 001859a505d5f8aef20e0f27d32f992d0eb74f164d69d274016cab9fbc4626ae 832836 vt_0.57721+ds-3_riscv64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 03 Oct 2025 14:06:54 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.72-3.1), automake (= 1:1.17-4), autopoint (= 0.23.1-2), autotools-dev (= 20240727.1), base-files (= 14), base-passwd (= 3.6.7), bash (= 5.3-1), binutils (= 2.45-7), binutils-common (= 2.45-7), binutils-x86-64-linux-gnu (= 2.45-7), bsdextrautils (= 2.41.2-3), build-essential (= 12.12), bzip2 (= 1.0.8-6), ca-certificates (= 20250419), comerr-dev (= 2.1-1.47.2-3+b3), coreutils (= 9.7-3), cpp (= 4:15.2.0-4), cpp-15 (= 15.2.0-4), cpp-15-x86-64-linux-gnu (= 15.2.0-4), cpp-x86-64-linux-gnu (= 4:15.2.0-4), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.28), debianutils (= 5.23.2), dh-autoreconf (= 21), dh-strip-nondeterminism (= 1.15.0-1), diffutils (= 1:3.10-4), dpkg (= 1.22.21), dpkg-dev (= 1.22.21), dwz (= 0.16-2), file (= 1:5.46-5), findutils (= 4.10.0-3), fontconfig (= 2.15.0-2.4), fontconfig-config (= 2.15.0-2.4), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), g++ (= 4:15.2.0-4), g++-15 (= 15.2.0-4), g++-15-x86-64-linux-gnu (= 15.2.0-4), g++-x86-64-linux-gnu (= 4:15.2.0-4), gcc (= 4:15.2.0-4), gcc-15 (= 15.2.0-4), gcc-15-base (= 15.2.0-4), gcc-15-x86-64-linux-gnu (= 15.2.0-4), gcc-x86-64-linux-gnu (= 4:15.2.0-4), gettext (= 0.23.1-2+b1), gettext-base (= 0.23.1-2+b1), grep (= 3.12-1), groff-base (= 1.23.0-9), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.69), intltool-debian (= 0.35.0+20060710.6), krb5-multidev (= 1.21.3-5), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libasan8 (= 15.2.0-4), libatomic1 (= 15.2.0-4), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.1.2-1), libaudit1 (= 1:4.1.2-1), libbinutils (= 2.45-7), libblas3 (= 3.12.1-7), libblkid1 (= 2.41.2-3), libbrotli-dev (= 1.1.0-2+b7), libbrotli1 (= 1.1.0-2+b7), libbz2-1.0 (= 1.0.8-6), libbz2-dev (= 1.0.8-6), libc-bin (= 2.41-12), libc-dev-bin (= 2.41-12), libc6 (= 2.41-12), libc6-dev (= 2.41-12), libcairo2 (= 1.18.4-1+b1), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-10+b1), libcc1-0 (= 15.2.0-4), libcom-err2 (= 1.47.2-3+b3), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.45-7), libctf0 (= 2.45-7), libcurl3t64-gnutls (= 8.16.0-1), libcurl4-gnutls-dev (= 8.16.0-1), libcurl4t64 (= 8.16.0-1), libdatrie1 (= 0.2.13-4), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.280), libdebhelper-perl (= 13.28), libdeflate-dev (= 1.23-2), libdeflate0 (= 1.23-2), libdpkg-perl (= 1.22.21), libelf1t64 (= 0.193-3), libevent-2.1-7t64 (= 2.1.12-stable-10+b1), libexpat1 (= 2.7.3-1), libffi8 (= 3.5.2-2), libfile-stripnondeterminism-perl (= 1.15.0-1), libfontconfig1 (= 2.15.0-2.4), libfreetype6 (= 2.13.3+dfsg-1), libfribidi0 (= 1.0.16-3), libgcc-15-dev (= 15.2.0-4), libgcc-s1 (= 15.2.0-4), libgdbm-compat4t64 (= 1.26-1), libgdbm6t64 (= 1.26-1), libgfortran5 (= 15.2.0-4), libglib2.0-0t64 (= 2.84.4-3), libgmp-dev (= 2:6.3.0+dfsg-5), libgmp10 (= 2:6.3.0+dfsg-5), libgmpxx4ldbl (= 2:6.3.0+dfsg-5), libgnutls-dane0t64 (= 3.8.10-2), libgnutls-openssl27t64 (= 3.8.10-2), libgnutls28-dev (= 3.8.10-2), libgnutls30t64 (= 3.8.10-2), libgomp1 (= 15.2.0-4), libgprofng0 (= 2.45-7), libgraphite2-3 (= 1.3.14-9), libgssapi-krb5-2 (= 1.21.3-5), libgssrpc4t64 (= 1.21.3-5), libharfbuzz0b (= 12.1.0-1), libhogweed6t64 (= 3.10.2-1), libhts-dev (= 1.22.1+ds2-1), libhts3t64 (= 1.22.1+ds2-1), libhtscodecs2 (= 1.6.1-2), libhwasan0 (= 15.2.0-4), libice6 (= 2:1.1.1-1), libicu76 (= 76.1-4), libidn2-0 (= 2.3.8-4), libidn2-dev (= 2.3.8-4), libisl23 (= 0.27-1), libitm1 (= 15.2.0-4), libjansson4 (= 2.14-2+b3), libjbig0 (= 2.1-6.1+b2), libjpeg62-turbo (= 1:2.1.5-4), libk5crypto3 (= 1.21.3-5), libkadm5clnt-mit12 (= 1.21.3-5), libkadm5srv-mit12 (= 1.21.3-5), libkdb5-10t64 (= 1.21.3-5), libkeyutils1 (= 1.6.3-6), libkrb5-3 (= 1.21.3-5), libkrb5-dev (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), liblapack3 (= 3.12.1-7), libldap-dev (= 2.6.10+dfsg-1), libldap2 (= 2.6.10+dfsg-1), liblerc4 (= 4.0.0+ds-5), liblsan0 (= 15.2.0-4), liblzma-dev (= 5.8.1-1.1), liblzma5 (= 5.8.1-1.1), libmagic-mgc (= 1:5.46-5), libmagic1t64 (= 1:5.46-5), libmd0 (= 1.1.0-2+b1), libmount1 (= 2.41.2-3), libmpc3 (= 1.3.1-2), libmpfr6 (= 4.2.2-2), libncursesw6 (= 6.5+20250216-2), libnettle8t64 (= 3.10.2-1), libnghttp2-14 (= 1.64.0-1.1+b1), libnghttp2-dev (= 1.64.0-1.1+b1), libnghttp3-9 (= 1.12.0-1), libnghttp3-dev (= 1.12.0-1), libngtcp2-16 (= 1.16.0-1), libngtcp2-crypto-gnutls-dev (= 1.16.0-1), libngtcp2-crypto-gnutls8 (= 1.16.0-1), libngtcp2-dev (= 1.16.0-1), libp11-kit-dev (= 0.25.9-2), libp11-kit0 (= 0.25.9-2), libpam-modules (= 1.7.0-5), libpam-modules-bin (= 1.7.0-5), libpam-runtime (= 1.7.0-5), libpam0g (= 1.7.0-5), libpango-1.0-0 (= 1.56.3-2), libpangocairo-1.0-0 (= 1.56.3-2), libpangoft2-1.0-0 (= 1.56.3-2), libpaper-utils (= 2.2.5-0.3+b2), libpaper2 (= 2.2.5-0.3+b2), libpcre2-16-0 (= 10.46-1), libpcre2-32-0 (= 10.46-1), libpcre2-8-0 (= 10.46-1), libpcre2-dev (= 10.46-1), libpcre2-posix3 (= 10.46-1), libperl5.40 (= 5.40.1-6), libpipeline1 (= 1.5.8-1), libpixman-1-0 (= 0.46.4-1), libpkgconf3 (= 1.8.1-4), libpng16-16t64 (= 1.6.50-1), libproc2-0 (= 2:4.0.4-9), libpsl-dev (= 0.21.2-1.1+b1), libpsl5t64 (= 0.21.2-1.1+b1), libquadmath0 (= 15.2.0-4), libreadline8t64 (= 8.3-3), librtmp-dev (= 2.4+20151223.gitfa8646d.1-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-3), libsasl2-2 (= 2.1.28+dfsg1-9), libsasl2-modules-db (= 2.1.28+dfsg1-9), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsframe2 (= 2.45-7), libsharpyuv0 (= 1.5.0-0.1), libsm6 (= 2:1.2.6-1), libsmartcols1 (= 2.41.2-3), libssh2-1-dev (= 1.11.1-1), libssh2-1t64 (= 1.11.1-1), libssl-dev (= 3.5.4-1), libssl3t64 (= 3.5.4-1), libstdc++-15-dev (= 15.2.0-4), libstdc++6 (= 15.2.0-4), libsvm-dev (= 3.24+ds-6.1), libsvm3 (= 3.24+ds-6.1), libsystemd0 (= 258-1), libtasn1-6 (= 4.20.0-2), libtasn1-6-dev (= 4.20.0-2), libtcl8.6 (= 8.6.17+dfsg-1), libtclap-dev (= 1.2.5-1+b2), libtext-charwidth-perl (= 0.04-11+b4), libtext-wrapi18n-perl (= 0.06-10), libthai-data (= 0.1.29-2), libthai0 (= 0.1.29-2+b1), libtiff6 (= 4.7.1-1), libtinfo6 (= 6.5+20250216-2), libtirpc-common (= 1.3.6+ds-1), libtirpc3t64 (= 1.3.6+ds-1), libtk8.6 (= 8.6.17-1), libtool (= 2.5.4-5), libtsan2 (= 15.2.0-4), libubsan1 (= 15.2.0-4), libuchardet0 (= 0.0.8-2), libudev1 (= 258-1), libunbound8 (= 1.24.0-2), libunistring5 (= 1.3-2), libuuid1 (= 2.41.2-3), libwebp7 (= 1.5.0-0.1), libx11-6 (= 2:1.8.12-1), libx11-data (= 2:1.8.12-1), libxau6 (= 1:1.0.11-1), libxcb-render0 (= 1.17.0-2+b1), libxcb-shm0 (= 1.17.0-2+b1), libxcb1 (= 1.17.0-2+b1), libxdmcp6 (= 1:1.1.5-1), libxext6 (= 2:1.3.4-1+b3), libxft2 (= 2.3.6-1+b4), libxml2-16 (= 2.14.5+dfsg-0.2), libxrender1 (= 1:0.9.12-1), libxss1 (= 1:1.2.3-1+b3), libxt6t64 (= 1:1.2.1-1.3), libzstd-dev (= 1.5.7+dfsg-1.1), libzstd1 (= 1.5.7+dfsg-1.1), linux-libc-dev (= 6.16.9-1), m4 (= 1.4.20-1), make (= 4.4.1-2), man-db (= 2.13.1-1), mawk (= 1.3.4.20250131-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), nettle-dev (= 3.10.2-1), openssl (= 3.5.4-1), openssl-provider-legacy (= 3.5.4-1), patch (= 2.8-2), perl (= 5.40.1-6), perl-base (= 5.40.1-6), perl-modules-5.40 (= 5.40.1-6), pkgconf (= 1.8.1-4), pkgconf-bin (= 1.8.1-4), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-9), r-base-core (= 4.5.1-1), r-mathlib (= 4.5.1-1), readline-common (= 8.3-3), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.26), sysvinit-utils (= 3.14-4), tar (= 1.35+dfsg-3.1), tzdata (= 2025b-5), ucf (= 3.0052), unzip (= 6.0-29), util-linux (= 2.41.2-3), x11-common (= 1:7.7+25), xdg-utils (= 1.2.1-2), xz-utils (= 5.8.1-1.1), zip (= 3.0-15), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1604910580" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ vt-dbgsym_0.57721+ds-3_riscv64.deb ---------------------------------- new Debian package, version 2.0. size 33746964 bytes: control archive=536 bytes. 364 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: vt-dbgsym Source: vt Version: 0.57721+ds-3 Auto-Built-Package: debug-symbols Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 35674 Depends: vt (= 0.57721+ds-3) Section: debug Priority: optional Description: debug symbols for vt Build-Ids: 6a9b6cae11e8e2d57777db17f1a19b3e0c92e77c drwxr-xr-x root/root 0 2020-11-09 08:29 ./ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/lib/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/lib/debug/.build-id/6a/ -rw-r--r-- root/root 36519160 2020-11-09 08:29 ./usr/lib/debug/.build-id/6a/9b6cae11e8e2d57777db17f1a19b3e0c92e77c.debug drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/share/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-11-09 08:29 ./usr/share/doc/vt-dbgsym -> vt vt_0.57721+ds-3_riscv64.deb --------------------------- new Debian package, version 2.0. size 832836 bytes: control archive=920 bytes. 828 bytes, 17 lines control 301 bytes, 5 lines md5sums Package: vt Version: 0.57721+ds-3 Architecture: riscv64 Maintainer: Debian Med Packaging Team Installed-Size: 2245 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.4), libhts3t64 (>= 1.17), libpcre2-8-0 (>= 10.22), libstdc++6 (>= 13.1), r-base-core Section: science Priority: optional Homepage: https://genome.sph.umich.edu/wiki/Vt Description: toolset for short variant discovery in genetic sequence data vt is a variant tool set that discovers short variants from Next Generation Sequencing data. . Vt-normalize is a tool to normalize representation of genetic variants in the VCF. Variant normalization is formally defined as the consistent representation of genetic variants in an unambiguous and concise way. In vt a simple general algorithm to enforce this is implemented. drwxr-xr-x root/root 0 2020-11-09 08:29 ./ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/bin/ -rwxr-xr-x root/root 2283856 2020-11-09 08:29 ./usr/bin/vt drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/share/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/share/doc/vt/ -rw-r--r-- root/root 306 2020-11-09 08:29 ./usr/share/doc/vt/README.test -rw-r--r-- root/root 426 2020-11-09 08:29 ./usr/share/doc/vt/changelog.Debian.gz -rw-r--r-- root/root 1766 2020-11-09 08:29 ./usr/share/doc/vt/copyright drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/share/man/ drwxr-xr-x root/root 0 2020-11-09 08:29 ./usr/share/man/man1/ -rw-r--r-- root/root 659 2020-11-09 08:29 ./usr/share/man/man1/vt.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1464 B] Get:5 copy:/<>/apt_archive ./ Packages [1547 B] Fetched 3626 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The solver encountered an error of type: ERR_UNSOLVABLE The following information might help you to understand what is wrong: Unsatisfied dependencies: libappstream5 : Depends: libcurl3t64-gnutls (>= 7.63.0) but it is not going to be installed Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:riscv64 : Depends: lintian:amd64 E: External solver failed with: Unsatisfied dependencies: apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 459 Distribution: unstable Foreign Architectures: riscv64 Host Architecture: riscv64 Install-Time: 25 Job: vt_0.57721+ds-3 Lintian: error Machine Architecture: amd64 Package: vt Package-Time: 506 Source-Version: 0.57721+ds-3 Space: n/a Status: successful Version: 0.57721+ds-3 -------------------------------------------------------------------------------- Finished at 2025-10-03T14:06:55Z Build needed 00:08:26, no disk space