sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org

+==============================================================================+
| wham-align 0.1.5-3.1 (arm64)                 Sat, 25 Jul 2020 21:44:21 +0000 |
+==============================================================================+

Package: wham-align
Version: 0.1.5-3.1
Source Version: 0.1.5-3.1
Distribution: unstable
Machine Architecture: amd64
Host Architecture: arm64
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-4fe932c9-8480-4d93-99fa-38ccbe13052a' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/wham-align-T09eHL/resolver-TZTMU3' with '<<RESOLVERDIR>>'

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| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB]
Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-07-25-0816.53.pdiff [11.1 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-07-25-1413.46.pdiff [12.4 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-07-25-2014.28.pdiff [24.4 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-07-25-2014.28.pdiff [24.4 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-07-25-0816.53.pdiff [7183 B]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-07-25-1413.46.pdiff [6793 B]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-07-25-2014.28.pdiff [16.7 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-07-25-2014.28.pdiff [16.7 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8169 kB]
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Reading package lists...
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Building dependency tree...
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Calculating upgrade...
The following packages will be upgraded:
  cpp-10 gcc-10 gcc-10-base libasan6 libatomic1 libcc1-0 libgcc-10-dev
  libgcc-s1 libgomp1 libitm1 liblsan0 libquadmath0 libstdc++6 libtsan0
  libubsan1
15 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 28.2 MB of archives.
After this operation, 4096 B of additional disk space will be used.
Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1 amd64 10.2.0-3 [134 kB]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0 amd64 10.2.0-3 [313 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-base amd64 10.2.0-3 [198 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6 amd64 10.2.0-3 [492 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0 amd64 10.2.0-3 [145 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0 amd64 10.2.0-3 [141 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1 amd64 10.2.0-3 [25.8 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1 amd64 10.2.0-3 [100.0 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1 amd64 10.2.0-3 [9000 B]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6 amd64 10.2.0-3 [340 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10 amd64 10.2.0-3 [8000 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcc1-0 amd64 10.2.0-3 [39.7 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10 amd64 10.2.0-3 [15.9 MB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev amd64 10.2.0-3 [2326 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1 amd64 10.2.0-3 [41.3 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libquadmath0:amd64 (10.2.0-3) ...
Setting up libatomic1:amd64 (10.2.0-3) ...
Setting up libubsan1:amd64 (10.2.0-3) ...
Setting up libcc1-0:amd64 (10.2.0-3) ...
Setting up liblsan0:amd64 (10.2.0-3) ...
Setting up cpp-10 (10.2.0-3) ...
Setting up libitm1:amd64 (10.2.0-3) ...
Setting up libtsan0:amd64 (10.2.0-3) ...
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Setting up gcc-10 (10.2.0-3) ...
Processing triggers for libc-bin (2.31-2) ...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'wham-align' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/wham-align.git
Please use:
git clone https://salsa.debian.org/med-team/wham-align.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 127 kB of source archives.
Get:1 http://debian.oregonstate.edu/debian unstable/main wham-align 0.1.5-3.1 (dsc) [1886 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main wham-align 0.1.5-3.1 (tar) [120 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main wham-align 0.1.5-3.1 (diff) [4980 B]
Fetched 127 kB in 0s (505 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/wham-align-T09eHL/wham-align-0.1.5' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/wham-align-T09eHL' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11), help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64
Filtered Build-Depends: debhelper (>= 11), help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [406 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [495 B]
Fetched 1858 B in 0s (81.8 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu
  bsdextrautils build-essential cpp-10-aarch64-linux-gnu cpp-aarch64-linux-gnu
  cross-config crossbuild-essential-arm64 debhelper dh-autoreconf
  dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10
  g++-10-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-aarch64-linux-gnu
  gcc-10-aarch64-linux-gnu-base gcc-10-base:arm64 gcc-10-cross-base
  gcc-aarch64-linux-gnu gettext gettext-base groff-base help2man
  intltool-debian libarchive-zip-perl libasan6:arm64 libasan6-arm64-cross
  libatomic1:arm64 libatomic1-arm64-cross libc6:arm64 libc6-arm64-cross
  libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libconfig-auto-perl
  libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:arm64
  libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl
  libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl
  libfile-which-perl libgcc-10-dev:arm64 libgcc-10-dev-arm64-cross
  libgcc-s1:arm64 libgcc-s1-arm64-cross libglib2.0-0 libgomp1:arm64
  libgomp1-arm64-cross libicu67 libio-string-perl libitm1:arm64
  libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64
  liblsan0-arm64-cross libmagic-mgc libmagic1 libperl5.30 libpipeline1
  libsigsegv2 libstdc++-10-dev libstdc++-10-dev:arm64
  libstdc++-10-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross
  libsub-override-perl libtool libtsan0:arm64 libtsan0-arm64-cross
  libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
  libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64
  linux-libc-dev-arm64-cross m4 man-db perl perl-modules-5.30 po-debconf
  sensible-utils ucf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales
  cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib
  g++-10-multilib gcc-10-doc manpages-dev flex bison gdb-aarch64-linux-gnu
  gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64
  libc-l10n:arm64 locales:arm64 glibc-doc manpages-dev:arm64 gnupg git bzr
  libstdc++-10-doc libstdc++-10-doc:arm64 libtool-doc gfortran
  | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less
  www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl
  libtap-harness-archive-perl libmail-box-perl
Recommended packages:
  gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:arm64
  libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl
  libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu
  bsdextrautils build-essential cpp-10-aarch64-linux-gnu cpp-aarch64-linux-gnu
  cross-config crossbuild-essential-arm64 debhelper dh-autoreconf
  dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10
  g++-10-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-10-aarch64-linux-gnu
  gcc-10-aarch64-linux-gnu-base gcc-10-base:arm64 gcc-10-cross-base
  gcc-aarch64-linux-gnu gettext gettext-base groff-base help2man
  intltool-debian libarchive-zip-perl libasan6:arm64 libasan6-arm64-cross
  libatomic1:arm64 libatomic1-arm64-cross libc6:arm64 libc6-arm64-cross
  libc6-dev libc6-dev:arm64 libc6-dev-arm64-cross libconfig-auto-perl
  libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:arm64
  libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl
  libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl
  libfile-which-perl libgcc-10-dev:arm64 libgcc-10-dev-arm64-cross
  libgcc-s1:arm64 libgcc-s1-arm64-cross libglib2.0-0 libgomp1:arm64
  libgomp1-arm64-cross libicu67 libio-string-perl libitm1:arm64
  libitm1-arm64-cross liblocale-gettext-perl liblsan0:arm64
  liblsan0-arm64-cross libmagic-mgc libmagic1 libperl5.30 libpipeline1
  libsigsegv2 libstdc++-10-dev libstdc++-10-dev:arm64
  libstdc++-10-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross
  libsub-override-perl libtool libtsan0:arm64 libtsan0-arm64-cross
  libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
  libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64
  linux-libc-dev-arm64-cross m4 man-db perl perl-modules-5.30 po-debconf
  sbuild-build-depends-main-dummy:arm64 sensible-utils ucf
0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded.
Need to get 97.6 MB of archives.
After this operation, 416 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36-1 [140 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-10-base arm64 10.2.0-3 [198 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-3 [801 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.35-1 [2800 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-2 [2395 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-3 [1714 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.0-3 [8658 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.1.0-1 [1644 B]
Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B]
Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-aarch64-linux-gnu-base amd64 10.1.0-3cross1 [197 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-aarch64-linux-gnu amd64 10.1.0-3cross1 [7809 kB]
Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:10.1.0-1 [16.8 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.1.0-3cross1 [194 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.31-1cross2 [1260 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-arm64-cross all 10.1.0-3cross1 [34.7 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 10.1.0-3cross1 [89.0 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 10.1.0-3cross1 [23.3 kB]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 10.1.0-3cross1 [9252 B]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-arm64-cross all 10.1.0-3cross1 [299 kB]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 10.1.0-3cross1 [125 kB]
Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 10.1.0-3cross1 [285 kB]
Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 10.1.0-3cross1 [411 kB]
Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 10.1.0-3cross1 [122 kB]
Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-arm64-cross all 10.1.0-3cross1 [878 kB]
Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-aarch64-linux-gnu amd64 10.1.0-3cross1 [15.5 MB]
Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:10.1.0-1 [1464 B]
Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.7.6-1cross2 [1208 kB]
Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.31-1cross2 [2067 kB]
Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-arm64-cross all 10.1.0-3cross1 [1673 kB]
Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-aarch64-linux-gnu amd64 10.1.0-3cross1 [8457 kB]
Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:10.1.0-1 [1184 B]
Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB]
Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB]
Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-3 [8610 kB]
Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5+b1 [710 kB]
Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB]
Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB]
Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB]
Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB]
Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB]
Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB]
Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB]
Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB]
Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB]
Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB]
Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB]
Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.8 [6644 B]
Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB]
Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB]
Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2 [187 kB]
Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB]
Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB]
Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB]
Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.4-1 [1341 kB]
Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB]
Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB]
Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB]
Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2 [1007 kB]
Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.47.16 [181 kB]
Get:88 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-s1 arm64 10.2.0-3 [34.5 kB]
Get:89 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt1 arm64 1:4.4.16-1 [90.4 kB]
Get:90 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.31-2 [2485 kB]
Get:91 http://debian.oregonstate.edu/debian unstable/main arm64 libasan6 arm64 10.2.0-3 [305 kB]
Get:92 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 10.2.0-3 [9432 B]
Get:93 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.7.6-1 [1107 kB]
Get:94 http://debian.oregonstate.edu/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.16-1 [111 kB]
Get:95 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.31-2 [2078 kB]
Get:96 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 10.2.0-3 [91.9 kB]
Get:97 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 10.2.0-3 [23.8 kB]
Get:98 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 10.2.0-3 [126 kB]
Get:99 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 10.2.0-3 [293 kB]
Get:100 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 10.2.0-3 [450 kB]
Get:101 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 10.2.0-3 [123 kB]
Get:102 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-10-dev arm64 10.2.0-3 [877 kB]
Get:103 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-10-dev arm64 10.2.0-3 [1675 kB]
debconf: delaying package configuration, since apt-utils is not installed
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update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up g++-10-aarch64-linux-gnu (10.1.0-3cross1) ...
Setting up libxml-libxml-perl (2.0134+dfsg-2) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version
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Setting up dpkg-cross (2.6.15-3.1) ...
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Setting up dh-autoreconf (19) ...
Setting up libc6:arm64 (2.31-2) ...
Setting up libcrypt-dev:arm64 (1:4.4.16-1) ...
Setting up libc6-dev:arm64 (2.31-2) ...
Setting up libstdc++6:arm64 (10.2.0-3) ...
Setting up liblsan0:arm64 (10.2.0-3) ...
Setting up libitm1:arm64 (10.2.0-3) ...
Setting up libtsan0:arm64 (10.2.0-3) ...
Setting up debhelper (13.2) ...
Setting up libgomp1:arm64 (10.2.0-3) ...
Setting up libasan6:arm64 (10.2.0-3) ...
Setting up libatomic1:arm64 (10.2.0-3) ...
Setting up libubsan1:arm64 (10.2.0-3) ...
Setting up libgcc-10-dev:arm64 (10.2.0-3) ...
Setting up libstdc++-10-dev:arm64 (10.2.0-3) ...
Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ...
Processing triggers for libc-bin (2.31-2) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (arm64 included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) amd64 (x86_64)
Toolchain package versions: binutils_2.35-1 dpkg-dev_1.20.5 g++-10_10.2.0-3 gcc-10_10.2.0-3 libc6-dev_2.31-2 libstdc++-10-dev_10.2.0-3 libstdc++-10-dev-arm64-cross_10.1.0-3cross1 libstdc++6_10.2.0-3 libstdc++6-arm64-cross_10.1.0-3cross1 linux-libc-dev_5.7.6-1
Package versions: adduser_3.118 apt_2.1.7 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-6 binutils_2.35-1 binutils-aarch64-linux-gnu_2.35-1 binutils-common_2.35-1 binutils-x86-64-linux-gnu_2.35-1 bsdextrautils_2.36-1 bsdutils_1:2.36-1 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-3 cpp_4:10.1.0-1 cpp-10_10.2.0-3 cpp-10-aarch64-linux-gnu_10.1.0-3cross1 cpp-8_8.4.0-4 cpp-aarch64-linux-gnu_4:10.1.0-1 cross-config_2.6.15-3.1 crossbuild-essential-arm64_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2 debian-archive-keyring_2019.1 debianutils_4.11 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-1 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.1.0-1 g++-10_10.2.0-3 g++-10-aarch64-linux-gnu_10.1.0-3cross1 g++-aarch64-linux-gnu_4:10.1.0-1 gcc_4:10.1.0-1 gcc-10_10.2.0-3 gcc-10-aarch64-linux-gnu_10.1.0-3cross1 gcc-10-aarch64-linux-gnu-base_10.1.0-3cross1 gcc-10-base_10.2.0-3 gcc-10-cross-base_10.1.0-3cross1 gcc-8-base_8.4.0-4 gcc-9-base_9.3.0-16 gcc-aarch64-linux-gnu_4:10.1.0-1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.4-1 groff-base_1.22.4-5 gzip_1.10-2 help2man_1.47.16 hostname_3.23 init-system-helpers_1.58 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.7 libarchive-zip-perl_1.68-1 libasan5_9.3.0-16 libasan6_10.2.0-3 libasan6-arm64-cross_10.1.0-3cross1 libatomic1_10.2.0-3 libatomic1-arm64-cross_10.1.0-3cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3 libaudit1_1:2.8.5-3+b1 libbinutils_2.35-1 libblkid1_2.36-1 libbz2-1.0_1.0.8-4 libc-bin_2.31-2 libc-dev-bin_2.31-2 libc6_2.31-2 libc6-arm64-cross_2.31-1cross2 libc6-dev_2.31-2 libc6-dev-arm64-cross_2.31-1cross2 libcap-ng0_0.7.9-2.2 libcc1-0_10.2.0-3 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.16-1 libcrypt1_1:4.4.16-1 libctf-nobfd0_2.35-1 libctf0_2.35-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.253 libdebhelper-perl_13.2 libdebian-dpkgcross-perl_2.6.15-3.1 libdpkg-perl_1.20.5 libelf1_0.176-1.1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-1 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.0-3 libgcc-10-dev-arm64-cross_10.1.0-3cross1 libgcc-s1_10.2.0-3 libgcc-s1-arm64-cross_10.1.0-3cross1 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.2.0-3 libgomp1-arm64-cross_10.1.0-3cross1 libgpg-error0_1.38-2 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libicu67_67.1-3 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.2.0-3 libitm1-arm64-cross_10.1.0-3cross1 liblocale-gettext-perl_1.07-4 liblsan0_10.2.0-3 liblsan0-arm64-cross_10.1.0-3cross1 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-1 libmpc3_1.1.0-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-4 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.6-2 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2 libquadmath0_10.2.0-3 libseccomp2_2.4.3-1+b1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsmartcols1_2.36-1 libss2_1.45.6-1 libstdc++-10-dev_10.2.0-3 libstdc++-10-dev-arm64-cross_10.1.0-3cross1 libstdc++6_10.2.0-3 libstdc++6-arm64-cross_10.1.0-3cross1 libsub-override-perl_0.09-2 libsystemd0_245.6-3 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10.2.0-3 libtsan0-arm64-cross_10.1.0-3cross1 libubsan1_10.2.0-3 libubsan1-arm64-cross_10.1.0-3cross1 libuchardet0_0.0.7-1 libudev1_245.6-3 libunistring2_0.9.10-4 libuuid1_2.36-1 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.10+dfsg-5+b1 libyaml-perl_1.30-1 libzstd1_1.4.5+dfsg-3 linux-libc-dev_5.7.6-1 linux-libc-dev-arm64-cross_5.7.6-1cross2 login_1:4.8.1-1 logsave_1.45.6-1 lsb-base_11.1.0 m4_1.4.18-4 make_4.3-4 man-db_2.9.3-2 mawk_1.3.4.20200120-2 mount_2.36-1 ncurses-base_6.2-1 ncurses-bin_6.2-1 passwd_1:4.8.1-1 patch_2.7.6-6 perl_5.30.3-4 perl-base_5.30.3-4 perl-modules-5.28_5.28.1-6 perl-modules-5.30_5.30.3-4 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-3 tar_1.30+dfsg-7 tzdata_2020a-1 ucf_3.0043 util-linux_2.36-1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: wham-align
Binary: wham-align
Architecture: any
Version: 0.1.5-3.1
Maintainer: Steffen Moeller <moeller@debian.org>
Homepage: http://research.cs.wisc.edu/wham
Standards-Version: 4.5.0
Vcs-Browser: https://salsa.debian.org/med-team/wham-align
Vcs-Git: https://salsa.debian.org/med-team/wham-align.git
Testsuite: autopkgtest
Build-Depends: debhelper (>= 11), help2man
Package-List:
 wham-align deb science optional arch=any
Checksums-Sha1:
 e1ecc46d4ab3af47518fbdee4b8efab2c7a89bb9 120296 wham-align_0.1.5.orig.tar.gz
 c88f1f951edd56ad0fa6f73a9485ea06265fd07d 4980 wham-align_0.1.5-3.1.debian.tar.xz
Checksums-Sha256:
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 0de918cc96c5aac30452c6e7de36efea39f67787aa5a45150e1b314901c8e3a2 4980 wham-align_0.1.5-3.1.debian.tar.xz
Files:
 56e14e483b0fed5ae5faa4d1621ee3d7 120296 wham-align_0.1.5.orig.tar.gz
 6168311e2ceca322a3e037cca3e1a2d4 4980 wham-align_0.1.5-3.1.debian.tar.xz

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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.CNDhA2Zj/trustedkeys.kbx': General error
gpgv: Signature made Sun Jul  5 15:51:12 2020 UTC
gpgv:                using RSA key 3AFA757FAC6EA11D2FF45DF088D24287A2D898B1
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./wham-align_0.1.5-3.1.dsc
dpkg-source: info: extracting wham-align in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking wham-align_0.1.5.orig.tar.gz
dpkg-source: info: unpacking wham-align_0.1.5-3.1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying makefile.patch
dpkg-source: info: applying non-x86.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=helmut
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1003
SCHROOT_GROUP=helmut
SCHROOT_SESSION_ID=unstable-amd64-sbuild-4fe932c9-8480-4d93-99fa-38ccbe13052a
SCHROOT_UID=1003
SCHROOT_USER=helmut
SHELL=/bin/sh
USER=helmut

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package wham-align
dpkg-buildpackage: info: source version 0.1.5-3.1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Adrian Bunk <bunk@debian.org>
dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
	make -j1 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
rm -f wham wham-build *.o
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
rm -f debian/*.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
	rm -f debian/debhelper-build-stamp
	rm -rf debian/.debhelper/
	rm -f -- debian/wham-align.substvars debian/files
	rm -fr -- debian/wham-align/ debian/tmp/
	find .  \( \( \
		\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
   dh_auto_build -a
	make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc
make[1]: Entering directory '/<<PKGBUILDDIR>>'
aarch64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -Wno-write-strings hash.cpp
In file included from hitset.h:31,
                 from hash.h:29,
                 from hash.cpp:27:
pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’:
pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
  265 |     if (num > nError) {
      |         ~~~~^~~~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’:
pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable]
  602 |     int i, j, offset, min, tmp;
      |               ^~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’:
pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable]
  685 |     int a;
      |         ^
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’:
pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable]
  756 |     int a;
      |         ^
pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’:
pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  974 |     tmp.high = x.high ^ - x.high | (0LL - (x.low != 0));
      |                ~~~~~~~^~~~~~~~~~
In file included from hash.h:29,
                 from hash.cpp:27:
hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’:
hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
   86 |     int size;
      |         ^~~~
In file included from hash.cpp:27:
hash.h: In function ‘uint32 murmurHash(int64*, uint32)’:
hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable]
   86 |   uint32 sum = 0;
      |          ^~~
hash.cpp: In member function ‘int HashTable::preProcessEnd()’:
hash.cpp:236:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32’ {aka ‘const unsigned int’} [-Wsign-compare]
  236 |     if (h >= nHistogram)
      |         ~~^~~~~~~~~~~~~
hash.cpp:285:33: warning: comparison of integer expressions of different signedness: ‘uint32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  285 |     if (useEmbedTables() && tmp > embedShreshold) {
      |                             ~~~~^~~~~~~~~~~~~~~~
hash.cpp: In member function ‘void HashTable::setScanThreshold(double)’:
hash.cpp:343:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  343 |   for (int i = 0; i < nHistogram - 1; i++) {
      |                   ~~^~~~~~~~~~~~~~~~
hash.cpp: In member function ‘void HashTable::insert(int64*, unsigned int)’:
hash.cpp:460:38: warning: operation on ‘*(((HashTable*)this)->HashTable::overflowPool + ((sizetype)(((long unsigned int)curOverflowEntry) * 4)))’ may be undefined [-Wsequence-point]
  460 |       overflowPool[curOverflowEntry] =
hash.cpp:411:10: warning: unused variable ‘seqOffset’ [-Wunused-variable]
  411 |   uint32 seqOffset;
      |          ^~~~~~~~~
hash.cpp:413:10: warning: unused variable ‘counter’ [-Wunused-variable]
  413 |   uint32 counter = 0;
      |          ^~~~~~~
hash.cpp:414:11: warning: variable ‘seqVector’ set but not used [-Wunused-but-set-variable]
  414 |   int64 * seqVector;
      |           ^~~~~~~~~
hash.cpp:416:11: warning: unused variable ‘target’ [-Wunused-variable]
  416 |   int64 * target = &tspace[8];
      |           ^~~~~~
hash.cpp:417:8: warning: unused variable ‘isBloomFilter’ [-Wunused-variable]
  417 |   bool isBloomFilter;
      |        ^~~~~~~~~~~~~
hash.cpp:418:12: warning: unused variable ‘bloomFilter’ [-Wunused-variable]
  418 |   uint32 * bloomFilter;
      |            ^~~~~~~~~~~
hash.cpp:419:10: warning: unused variable ‘bloomFilterNum’ [-Wunused-variable]
  419 |   uint32 bloomFilterNum;
      |          ^~~~~~~~~~~~~~
hash.cpp: In member function ‘int HashTable::buildEmbedTable()’:
hash.cpp:469:33: warning: unused variable ‘rest’ [-Wunused-variable]
  469 |   int64 * query = &ttspace[8], *rest = &ttspace[24], *rest1 = &ttspace[40],
      |                                 ^~~~
hash.cpp:469:55: warning: unused variable ‘rest1’ [-Wunused-variable]
  469 |   int64 * query = &ttspace[8], *rest = &ttspace[24], *rest1 = &ttspace[40],
      |                                                       ^~~~~
hash.cpp:470:8: warning: unused variable ‘rest2’ [-Wunused-variable]
  470 |       *rest2 = &ttspace[56], *noheadkey = &ttspace[72];
      |        ^~~~~
hash.cpp:470:31: warning: unused variable ‘noheadkey’ [-Wunused-variable]
  470 |       *rest2 = &ttspace[56], *noheadkey = &ttspace[72];
      |                               ^~~~~~~~~
hash.cpp:472:34: warning: variable ‘startOffset’ set but not used [-Wunused-but-set-variable]
  472 |   uint32 seqOffset, entryOffset, startOffset;
      |                                  ^~~~~~~~~~~
hash.cpp: In member function ‘void HashTable::preinsertEmbedTableEntry(int64*, int, int)’:
hash.cpp:587:11: warning: unused variable ‘noheadkey’ [-Wunused-variable]
  587 |   int64 * noheadkey = &tspace[8], *rest = &tspace[24];
      |           ^~~~~~~~~
hash.cpp:590:8: warning: unused variable ‘subkey4’ [-Wunused-variable]
  590 |       *subkey4 = &tspace[88], *subkey5 = &tspace[104];
      |        ^~~~~~~
hash.cpp:590:32: warning: unused variable ‘subkey5’ [-Wunused-variable]
  590 |       *subkey4 = &tspace[88], *subkey5 = &tspace[104];
      |                                ^~~~~~~
hash.cpp: In member function ‘void HashTable::insertEmbedTableEntry(int64*, uint32, int, int)’:
hash.cpp:662:11: warning: unused variable ‘noheadkey’ [-Wunused-variable]
  662 |   int64 * noheadkey = &tspace[8], *rest = &tspace[24];
      |           ^~~~~~~~~
hash.cpp:665:8: warning: unused variable ‘subkey4’ [-Wunused-variable]
  665 |       *subkey4 = &tspace[88], *subkey5 = &tspace[104];
      |        ^~~~~~~
hash.cpp:665:32: warning: unused variable ‘subkey5’ [-Wunused-variable]
  665 |       *subkey4 = &tspace[88], *subkey5 = &tspace[104];
      |                                ^~~~~~~
hash.cpp: In member function ‘unsigned int HashTable::lookup(int64*, int64*, int, char*, strand, int, HitSet*, bool)’:
hash.cpp:746:7: warning: unused variable ‘num’ [-Wunused-variable]
  746 |   int num;
      |       ^~~
hash.cpp:750:11: warning: unused variable ‘diff’ [-Wunused-variable]
  750 |   int64 * diff = &tspace1[8], *target = &tspace2[8];
      |           ^~~~
hash.cpp:753:10: warning: unused variable ‘sid’ [-Wunused-variable]
  753 |   uint32 sid, soffset;
      |          ^~~
hash.cpp:753:15: warning: unused variable ‘soffset’ [-Wunused-variable]
  753 |   uint32 sid, soffset;
      |               ^~~~~~~
hash.cpp: In member function ‘unsigned int HashTable::lookupEmbedTable(int64*, uint32, int, char*, strand, int, HitSet*, bool)’:
hash.cpp:962:11: warning: unused variable ‘noheadkey’ [-Wunused-variable]
  962 |   int64 * noheadkey = &tspace[8], *rest = &tspace[24];
      |           ^~~~~~~~~
hash.cpp:965:8: warning: unused variable ‘subkey4’ [-Wunused-variable]
  965 |       *subkey4 = &tspace[88], *subkey5 = &tspace[104];
      |        ^~~~~~~
hash.cpp:965:32: warning: unused variable ‘subkey5’ [-Wunused-variable]
  965 |       *subkey4 = &tspace[88], *subkey5 = &tspace[104];
      |                                ^~~~~~~
hash.cpp:973:11: warning: unused variable ‘seqVector’ [-Wunused-variable]
  973 |   int64 * seqVector = sequence->getSequence();
      |           ^~~~~~~~~
hash.cpp: In member function ‘bool HashTable::lookup(int64*, uint32)’:
hash.cpp:1052:7: warning: unused variable ‘num’ [-Wunused-variable]
 1052 |   int num;
      |       ^~~
hash.cpp:1056:11: warning: unused variable ‘diff’ [-Wunused-variable]
 1056 |   int64 * diff = &tspace1[8], *target = &tspace2[8];
      |           ^~~~
hash.cpp:1056:32: warning: unused variable ‘target’ [-Wunused-variable]
 1056 |   int64 * diff = &tspace1[8], *target = &tspace2[8];
      |                                ^~~~~~
hash.cpp:1057:11: warning: variable ‘seqVector’ set but not used [-Wunused-but-set-variable]
 1057 |   int64 * seqVector;
      |           ^~~~~~~~~
hash.cpp:1059:10: warning: unused variable ‘sid’ [-Wunused-variable]
 1059 |   uint32 sid, soffset;
      |          ^~~
hash.cpp:1059:15: warning: unused variable ‘soffset’ [-Wunused-variable]
 1059 |   uint32 sid, soffset;
      |               ^~~~~~~
hash.cpp: In member function ‘uint32 HashTable::printOverflowList(uint32, uint32, int64*)’:
hash.cpp:1184:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
 1184 |     for (int i = 0; i < keyOffset / BITS_PER_BASE; i++)
hash.cpp:1188:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
 1188 |     for (int i = 0; i < (lenSeq - keyOffset - lenKey) / BITS_PER_BASE; i++)
hash.cpp:1247:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 1247 |         for (int j = 0; j < strlen(set[i].str); j++)
      |                         ~~^~~~~~~~~~~~~~~~~~~~
hash.cpp:1254:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
 1254 |       for (int j = 0; j < strlen(set[i].str); j++)
      |                       ~~^~~~~~~~~~~~~~~~~~~~
hash.cpp:1137:11: warning: unused variable ‘diff’ [-Wunused-variable]
 1137 |   int64 * diff = &tspace1[8], *target = &tspace2[8];
      |           ^~~~
hash.cpp: In member function ‘int HashTable::sortList()’:
hash.cpp:1430:14: warning: variable ‘pool’ set but not used [-Wunused-but-set-variable]
 1430 |     uint32 * pool;
      |              ^~~~
hash.cpp:1321:34: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable]
 1321 |   uint32 entryOffset, seqOffset, offset;
      |                                  ^~~~~~
hash.cpp: In member function ‘void HashTable::checkRepeat(uint32)’:
hash.cpp:1673:34: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable]
 1673 |   uint32 entryOffset, seqOffset, offset;
      |                                  ^~~~~~
hash.cpp:1690:5: warning: label ‘restart’ defined but not used [-Wunused-label]
 1690 |     restart: if (buckets[bucketId] == HASH_EMPTY
      |     ^~~~~~~
hash.cpp: In member function ‘unsigned int HashTable::lookupEmbedTable(int64*, uint32, int, char*, strand, int, HitSet*, bool)’:
hash.cpp:1049:1: warning: control reaches end of non-void function [-Wreturn-type]
 1049 | }
      | ^
In file included from hash.cpp:31:
edit_distance.h: At global scope:
edit_distance.h:25:18: warning: ‘obj_score_mat’ defined but not used [-Wunused-variable]
   25 | static score_mat obj_score_mat = { 1, 1, 1, 1 };
      |                  ^~~~~~~~~~~~~
In file included from pair.h:26,
                 from hitset.h:31,
                 from hash.h:29,
                 from hash.cpp:27:
rdtsc.h: In function ‘long long unsigned int curtick()’:
rdtsc.h:32:10: warning: ‘tick’ is used uninitialized in this function [-Wuninitialized]
   32 |   return tick;
      |          ^~~~
aarch64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -Wno-write-strings embedhash.cpp
In file included from hitset.h:31,
                 from hash.h:29,
                 from embedhash.cpp:27:
pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’:
pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
  265 |     if (num > nError) {
      |         ~~~~^~~~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’:
pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable]
  602 |     int i, j, offset, min, tmp;
      |               ^~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’:
pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable]
  685 |     int a;
      |         ^
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’:
pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable]
  756 |     int a;
      |         ^
pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’:
pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  974 |     tmp.high = x.high ^ - x.high | (0LL - (x.low != 0));
      |                ~~~~~~~^~~~~~~~~~
In file included from hash.h:29,
                 from embedhash.cpp:27:
hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’:
hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
   86 |     int size;
      |         ^~~~
In file included from embedhash.cpp:27:
hash.h: In function ‘uint32 murmurHash(int64*, uint32)’:
hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable]
   86 |   uint32 sum = 0;
      |          ^~~
embedhash.cpp: In member function ‘int EmbedHashTable::preProcessEnd()’:
embedhash.cpp:137:16: warning: unused variable ‘ln2’ [-Wunused-variable]
  137 |   const double ln2 = log(2);
      |                ^~~
embedhash.cpp: In member function ‘void EmbedHashTable::setScanThreshold(double)’:
embedhash.cpp:253:9: warning: unused variable ‘sum’ [-Wunused-variable]
  253 |   int64 sum = 0;
      |         ^~~
embedhash.cpp:255:9: warning: unused variable ‘top’ [-Wunused-variable]
  255 |   int64 top = total - total * r;
      |         ^~~
embedhash.cpp: In member function ‘void EmbedHashTable::insert(int64*, unsigned int)’:
embedhash.cpp:369:38: warning: operation on ‘*(((EmbedHashTable*)this)->EmbedHashTable::overflowPool + ((sizetype)(((long unsigned int)curOverflowEntry) * 4)))’ may be undefined [-Wsequence-point]
  369 |       overflowPool[curOverflowEntry] =
embedhash.cpp:328:10: warning: unused variable ‘seqOffset’ [-Wunused-variable]
  328 |   uint32 seqOffset;
      |          ^~~~~~~~~
embedhash.cpp:330:10: warning: unused variable ‘counter’ [-Wunused-variable]
  330 |   uint32 counter = 0;
      |          ^~~~~~~
embedhash.cpp:331:11: warning: variable ‘seqVector’ set but not used [-Wunused-but-set-variable]
  331 |   int64 * seqVector;
      |           ^~~~~~~~~
embedhash.cpp:333:11: warning: unused variable ‘target’ [-Wunused-variable]
  333 |   int64 * target = &tspace[8];
      |           ^~~~~~
embedhash.cpp:334:8: warning: unused variable ‘isBloomFilter’ [-Wunused-variable]
  334 |   bool isBloomFilter;
      |        ^~~~~~~~~~~~~
embedhash.cpp:335:12: warning: unused variable ‘bloomFilter’ [-Wunused-variable]
  335 |   uint32 * bloomFilter;
      |            ^~~~~~~~~~~
embedhash.cpp:336:10: warning: unused variable ‘bloomFilterNum’ [-Wunused-variable]
  336 |   uint32 bloomFilterNum;
      |          ^~~~~~~~~~~~~~
embedhash.cpp: In member function ‘unsigned int EmbedHashTable::lookup(int64*, int64*, int, char*, strand, int, HitSet*, bool)’:
embedhash.cpp:385:7: warning: unused variable ‘num’ [-Wunused-variable]
  385 |   int num;
      |       ^~~
embedhash.cpp:387:34: warning: variable ‘startOffset’ set but not used [-Wunused-but-set-variable]
  387 |   uint32 seqOffset, entryOffset, startOffset;
      |                                  ^~~~~~~~~~~
embedhash.cpp:389:11: warning: unused variable ‘diff’ [-Wunused-variable]
  389 |   int64 * diff = &tspace1[8], *target = &tspace2[8];
      |           ^~~~
embedhash.cpp:392:10: warning: unused variable ‘sid’ [-Wunused-variable]
  392 |   uint32 sid, soffset;
      |          ^~~
embedhash.cpp:392:15: warning: unused variable ‘soffset’ [-Wunused-variable]
  392 |   uint32 sid, soffset;
      |               ^~~~~~~
In file included from embedhash.cpp:32:
edit_distance.h: At global scope:
edit_distance.h:25:18: warning: ‘obj_score_mat’ defined but not used [-Wunused-variable]
   25 | static score_mat obj_score_mat = { 1, 1, 1, 1 };
      |                  ^~~~~~~~~~~~~
In file included from pair.h:26,
                 from hitset.h:31,
                 from hash.h:29,
                 from embedhash.cpp:27:
rdtsc.h: In function ‘long long unsigned int curtick()’:
rdtsc.h:32:10: warning: ‘tick’ is used uninitialized in this function [-Wuninitialized]
   32 |   return tick;
      |          ^~~~
aarch64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -Wno-write-strings main.cpp
In file included from hitset.h:31,
                 from hash.h:29,
                 from aligner.h:25,
                 from main.cpp:34:
pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’:
pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
  265 |     if (num > nError) {
      |         ~~~~^~~~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’:
pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable]
  602 |     int i, j, offset, min, tmp;
      |               ^~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’:
pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable]
  685 |     int a;
      |         ^
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’:
pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable]
  756 |     int a;
      |         ^
pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’:
pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  974 |     tmp.high = x.high ^ - x.high | (0LL - (x.low != 0));
      |                ~~~~~~~^~~~~~~~~~
In file included from hash.h:29,
                 from aligner.h:25,
                 from main.cpp:34:
hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’:
hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
   86 |     int size;
      |         ^~~~
In file included from aligner.h:25,
                 from main.cpp:34:
hash.h: In function ‘uint32 murmurHash(int64*, uint32)’:
hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable]
   86 |   uint32 sum = 0;
      |          ^~~
main.cpp: In function ‘int getArguVal(char*)’:
main.cpp:159:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  159 |   else if (*c = 'g' || *c == 'G')
      |            ~~~^~~~~~~~~~~~~~~~~~
main.cpp: In function ‘int align(char*, AlignInfo*, char*, int)’:
main.cpp:350:7: warning: unused variable ‘i’ [-Wunused-variable]
  350 |   int i, j, ret;
      |       ^
main.cpp:350:10: warning: unused variable ‘j’ [-Wunused-variable]
  350 |   int i, j, ret;
      |          ^
main.cpp: In function ‘int main(int, char**)’:
main.cpp:523:7: warning: unused variable ‘numKeys’ [-Wunused-variable]
  523 |   int numKeys;
      |       ^~~~~~~
main.cpp:526:7: warning: unused variable ‘nSeq’ [-Wunused-variable]
  526 |   int nSeq = 1;
      |       ^~~~
main.cpp:532:21: warning: unused variable ‘sequence’ [-Wunused-variable]
  532 |   CompactSequence * sequence;
      |                     ^~~~~~~~
main.cpp:534:15: warning: unused variable ‘threadpool’ [-Wunused-variable]
  534 |   pthread_t * threadpool;
      |               ^~~~~~~~~~
main.cpp:536:9: warning: unused variable ‘threadid’ [-Wunused-variable]
  536 |   int * threadid;
      |         ^~~~~~~~
In file included from main.cpp:38:
edit_distance.h: At global scope:
edit_distance.h:25:18: warning: ‘obj_score_mat’ defined but not used [-Wunused-variable]
   25 | static score_mat obj_score_mat = { 1, 1, 1, 1 };
      |                  ^~~~~~~~~~~~~
main.cpp: In function ‘void mergeFiles(std::string)’:
main.cpp:269:21: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
  269 |     sprintf(buf, ".t%d ", i);
      |                     ^~
main.cpp:269:18: note: directive argument in the range [0, 2147483647]
  269 |     sprintf(buf, ".t%d ", i);
      |                  ^~~~~~~
main.cpp:269:12: note: ‘sprintf’ output between 5 and 14 bytes into a destination of size 10
  269 |     sprintf(buf, ".t%d ", i);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~
main.cpp:276:21: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
  276 |     sprintf(buf, ".t%d", i);
      |                     ^~
main.cpp:276:18: note: directive argument in the range [0, 2147483647]
  276 |     sprintf(buf, ".t%d", i);
      |                  ^~~~~~
main.cpp:276:12: note: ‘sprintf’ output between 4 and 13 bytes into a destination of size 10
  276 |     sprintf(buf, ".t%d", i);
      |     ~~~~~~~^~~~~~~~~~~~~~~~
aarch64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -Wno-write-strings sequence.cpp
In file included from hitset.h:31,
                 from hash.h:29,
                 from aligner.h:25,
                 from sequence.cpp:30:
pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’:
pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
  265 |     if (num > nError) {
      |         ~~~~^~~~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’:
pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable]
  602 |     int i, j, offset, min, tmp;
      |               ^~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’:
pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable]
  685 |     int a;
      |         ^
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’:
pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable]
  756 |     int a;
      |         ^
pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’:
pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  974 |     tmp.high = x.high ^ - x.high | (0LL - (x.low != 0));
      |                ~~~~~~~^~~~~~~~~~
In file included from hash.h:29,
                 from aligner.h:25,
                 from sequence.cpp:30:
hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’:
hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
   86 |     int size;
      |         ^~~~
In file included from aligner.h:25,
                 from sequence.cpp:30:
hash.h: In function ‘uint32 murmurHash(int64*, uint32)’:
hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable]
   86 |   uint32 sum = 0;
      |          ^~~
sequence.cpp: In member function ‘void CompactSequence::extractFileName(char*, char*)’:
sequence.cpp:97:10: warning: unused variable ‘str’ [-Wunused-variable]
   97 |   char * str;
      |          ^~~
sequence.cpp: In member function ‘int CompactSequence::build(char**, int, int, int)’:
sequence.cpp:238:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  238 |   for (i = 0; i < numFile; i++) {
      |               ~~^~~~~~~~~
sequence.cpp:309:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  309 | (  i = 0; i < nSeq; i++)
      |           ~~^~~~~~
sequence.cpp:324:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  324 |   for (i = 0; i < numFile; i++) {
      |               ~~^~~~~~~~~
sequence.cpp:344:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  344 |         for (j = 0; j < numError + 1; j++) {
      |                     ~~^~~~~~~~~~~~~~
sequence.cpp:410:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  410 |           if (lenSegmentN > numError + 1) {
      |               ~~~~~~~~~~~~^~~~~~~~~~~~~~
sequence.cpp:429:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  429 |           if (lenSegmentN > numError + 1) {
      |               ~~~~~~~~~~~~^~~~~~~~~~~~~~
sequence.cpp:223:16: warning: unused variable ‘step’ [-Wunused-variable]
  223 |   unsigned int step, nextstep;
      |                ^~~~
sequence.cpp:223:22: warning: unused variable ‘nextstep’ [-Wunused-variable]
  223 |   unsigned int step, nextstep;
      |                      ^~~~~~~~
sequence.cpp: In member function ‘int CompactSequence::filter(Aligner*, char**, int, char*)’:
sequence.cpp:534:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  534 |   for (i = 0; i < numFile; i++) {
      |               ~~^~~~~~~~~
sequence.cpp:599:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  599 |           if (lenSegmentN > nError + 1)
      |               ~~~~~~~~~~~~^~~~~~~~~~~~
sequence.cpp:520:16: warning: unused variable ‘step’ [-Wunused-variable]
  520 |   unsigned int step, nextstep;
      |                ^~~~
sequence.cpp:520:22: warning: unused variable ‘nextstep’ [-Wunused-variable]
  520 |   unsigned int step, nextstep;
      |                      ^~~~~~~~
sequence.cpp:521:9: warning: unused variable ‘numFileChar’ [-Wunused-variable]
  521 |   int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment;
      |         ^~~~~~~~~~~
sequence.cpp:521:22: warning: unused variable ‘numFileNSeg’ [-Wunused-variable]
  521 |   int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment;
      |                      ^~~~~~~~~~~
sequence.cpp:521:35: warning: unused variable ‘numFileSeq’ [-Wunused-variable]
  521 |   int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment;
      |                                   ^~~~~~~~~~
sequence.cpp:521:47: warning: unused variable ‘nChar’ [-Wunused-variable]
  521 |   int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment;
      |                                               ^~~~~
sequence.cpp:521:54: warning: unused variable ‘nNSegment’ [-Wunused-variable]
  521 |   int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment;
      |                                                      ^~~~~~~~~
sequence.cpp: In member function ‘int CompactSequence::save(char*)’:
sequence.cpp:738:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
  738 |   if (ret != size) {
      |       ~~~~^~~~~~~
sequence.cpp: In member function ‘int CompactSequence::load(char*)’:
sequence.cpp:804:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
  804 |   if (ret != size) {
      |       ~~~~^~~~~~~
sequence.cpp: In member function ‘int CompactSequence::build(char**, int, int, int)’:
sequence.cpp:506:15: warning: ‘offsetInOrgSeq’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  506 |   itree->flush(offsetInCmptSeq, 0, curSeq, offsetInOrgSeq);
      |   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequence.cpp: In static member function ‘static void CompactSequence::compose(char*, int, int64*)’:
sequence.cpp:672:19: warning: ‘code’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  672 |           | (code >> (forward_offset + BITS_PER_BASE - BITS_PER_LONGWORD));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aarch64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -Wno-write-strings aligner.cpp
In file included from hitset.h:31,
                 from hash.h:29,
                 from aligner.h:25,
                 from aligner.cpp:25:
pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’:
pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
  265 |     if (num > nError) {
      |         ~~~~^~~~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’:
pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable]
  602 |     int i, j, offset, min, tmp;
      |               ^~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’:
pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable]
  685 |     int a;
      |         ^
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’:
pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable]
  756 |     int a;
      |         ^
pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’:
pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  974 |     tmp.high = x.high ^ - x.high | (0LL - (x.low != 0));
      |                ~~~~~~~^~~~~~~~~~
In file included from hash.h:29,
                 from aligner.h:25,
                 from aligner.cpp:25:
hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’:
hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
   86 |     int size;
      |         ^~~~
In file included from aligner.h:25,
                 from aligner.cpp:25:
hash.h: In function ‘uint32 murmurHash(int64*, uint32)’:
hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable]
   86 |   uint32 sum = 0;
      |          ^~~
aligner.cpp: In member function ‘int Aligner::initLookupArray()’:
aligner.cpp:365:37: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
  365 |       if ((indexBits[i] >> j) & 0x1 == 1) {
      |                                 ~~~~^~~~
aligner.cpp:371:37: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
  371 |       if ((indexBits[i] >> j) & 0x1 == 1) {
      |                                 ~~~~^~~~
aligner.cpp: In member function ‘int Aligner::preProcessHashTables()’:
aligner.cpp:534:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  534 |   for (i = 0; i < nHashTable; i++) {
      |               ~~^~~~~~~~~~~~
aligner.cpp:712:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  712 |   for (i = 0; i < nHashTable; i++) {
      |               ~~^~~~~~~~~~~~
aligner.cpp: In member function ‘int Aligner::build(char*)’:
aligner.cpp:724:16: warning: unused variable ‘i’ [-Wunused-variable]
  724 |   unsigned int i, j;
      |                ^
aligner.cpp:724:19: warning: unused variable ‘j’ [-Wunused-variable]
  724 |   unsigned int i, j;
      |                   ^
aligner.cpp: In member function ‘int Aligner::buildHashTables(char*)’:
aligner.cpp:807:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  807 |   for (i = 0; i < nHashTable; i++) {
      |               ~~^~~~~~~~~~~~
aligner.cpp:844:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  844 |       for (i1 = 0; i1 < lenPartition * (nPartition - 1); i1 += lenPartition) {
      |                    ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:864:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  864 |       for (i1 = 0; i1 < lenPartition * (nPartition - 2); i1 += lenPartition) {
      |                    ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:871:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  871 |         for (i2 = i1; i2 < lenPartition * (nPartition - 2);
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:894:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  894 |       for (i1 = 0; i1 < lenPartition * (nPartition - 3); i1 += lenPartition) {
      |                    ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:901:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  901 |         for (i2 = i1; i2 < lenPartition * (nPartition - 3);
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:909:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  909 |           for (i3 = i2; i3 < lenPartition * (nPartition - 3);
      |                         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:928:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  928 |       for (i1 = 0; i1 < lenPartition * (nPartition - 4); i1 += lenPartition) {
      |                    ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:930:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  930 |         for (i2 = i1; i2 < lenPartition * (nPartition - 4);
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:933:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  933 |           for (i3 = i2; i3 < lenPartition * (nPartition - 4);
      |                         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:936:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  936 |             for (i4 = i3; i4 < lenPartition * (nPartition - 4); i4 +=
      |                           ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:951:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  951 |       for (i1 = 0; i1 < lenPartition * (nPartition - 5); i1 += lenPartition) {
      |                    ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:953:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  953 |         for (i2 = i1; i2 < lenPartition * (nPartition - 5);
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:956:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  956 |           for (i3 = i2; i3 < lenPartition * (nPartition - 5);
      |                         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:959:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  959 |             for (i4 = i3; i4 < lenPartition * (nPartition - 5); i4 +=
      |                           ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:962:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  962 |               for (i5 = i4; i5 < lenPartition * (nPartition - 5); i5 +=
      |                             ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:983:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  983 |     for (i = 0; i < nHashTable; i++) {
      |                 ~~^~~~~~~~~~~~
aligner.cpp:1006:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1006 |     for (i = 0; i < nHashTable; i++) {
      |                 ~~^~~~~~~~~~~~
aligner.cpp: In member function ‘unsigned int Aligner::alignFirst(int64*, char*, strand, int, HitSet*, bool)’:
aligner.cpp:1035:10: warning: unused variable ‘offset’ [-Wunused-variable]
 1035 |   uint32 offset;
      |          ^~~~~~
aligner.cpp:1039:7: warning: unused variable ‘nHit’ [-Wunused-variable]
 1039 |   int nHit = 0;
      |       ^~~~
aligner.cpp: In member function ‘unsigned int Aligner::align(int64*, char*, strand, int, HitSet*, bool, bool)’:
aligner.cpp:1119:10: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable]
 1119 |   uint32 offset;
      |          ^~~~~~
aligner.cpp:1123:7: warning: variable ‘nHit’ set but not used [-Wunused-but-set-variable]
 1123 |   int nHit = 0;
      |       ^~~~
aligner.cpp: In member function ‘int Aligner::check(int)’:
aligner.cpp:1436:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1436 |   for (i = 0; i < num; i++) {
      |               ~~^~~~~
aligner.cpp:1452:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1452 |     for (j = 0; j < nError; j++) {
      |                 ~~^~~~~~~~
aligner.cpp:1426:7: warning: unused variable ‘ret’ [-Wunused-variable]
 1426 |   int ret;
      |       ^~~
aligner.cpp: In member function ‘AlignRes Aligner::alignSingleEnd(AlignInfo*, char*)’:
aligner.cpp:1541:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1541 |   for (i = 0; i < nHashTable; i++) {
      |               ~~^~~~~~~~~~~~
aligner.cpp:1547:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1547 |   for (i = 0; i < res.nRead; i++) {
      |               ~~^~~~~~~~~~~
aligner.cpp:1629:3: warning: deleting object of abstract class type ‘Writer’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor]
 1629 |   delete writer;
      |   ^~~~~~~~~~~~~
aligner.cpp:1502:10: warning: unused variable ‘file’ [-Wunused-variable]
 1502 |   FILE * file = NULL, *alfile = NULL, *unfile = NULL;
      |          ^~~~
aligner.cpp:1502:24: warning: unused variable ‘alfile’ [-Wunused-variable]
 1502 |   FILE * file = NULL, *alfile = NULL, *unfile = NULL;
      |                        ^~~~~~
aligner.cpp:1502:40: warning: unused variable ‘unfile’ [-Wunused-variable]
 1502 |   FILE * file = NULL, *alfile = NULL, *unfile = NULL;
      |                                        ^~~~~~
aligner.cpp:1505:7: warning: unused variable ‘strand’ [-Wunused-variable]
 1505 |   int strand;
      |       ^~~~~~
aligner.cpp:1508:9: warning: unused variable ‘ratio’ [-Wunused-variable]
 1508 |   float ratio;
      |         ^~~~~
aligner.cpp:1514:31: warning: unused variable ‘strata’ [-Wunused-variable]
 1514 |   bool sorted = info->sorted, strata = info->strata;
      |                               ^~~~~~
aligner.cpp: In member function ‘AlignRes Aligner::alignPairEnd(AlignInfo*, char*)’:
aligner.cpp:1685:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1685 |   for (i = 0; i < res.nRead; i++) {
      |               ~~^~~~~~~~~~~
aligner.cpp:1754:3: warning: deleting object of abstract class type ‘Writer’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor]
 1754 |   delete writer;
      |   ^~~~~~~~~~~~~
aligner.cpp:1637:8: warning: unused variable ‘success’ [-Wunused-variable]
 1637 |   bool success;
      |        ^~~~~~~
aligner.cpp:1638:16: warning: unused variable ‘nSuccessRead’ [-Wunused-variable]
 1638 |   unsigned int nSuccessRead = 0;
      |                ^~~~~~~~~~~~
aligner.cpp:1639:10: warning: unused variable ‘file’ [-Wunused-variable]
 1639 |   FILE * file = NULL;
      |          ^~~~
aligner.cpp:1646:8: warning: unused variable ‘mateFilename’ [-Wunused-variable]
 1646 |   char mateFilename[256];
      |        ^~~~~~~~~~~~
aligner.cpp:1652:31: warning: unused variable ‘strata’ [-Wunused-variable]
 1652 |   bool sorted = info->sorted, strata = info->strata;
      |                               ^~~~~~
aligner.cpp: In member function ‘AlignRes Aligner::mergeSingleEnd(AlignInfo*, int, char*)’:
aligner.cpp:1851:3: warning: deleting object of abstract class type ‘Writer’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor]
 1851 |   delete writer;
      |   ^~~~~~~~~~~~~
aligner.cpp:1775:10: warning: unused variable ‘ret’ [-Wunused-variable]
 1775 |   int i, ret;
      |          ^~~
aligner.cpp: In member function ‘AlignRes Aligner::mergePairEnd(AlignInfo*, int, char*)’:
aligner.cpp:1989:3: warning: deleting object of abstract class type ‘Writer’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor]
 1989 |   delete writer;
      |   ^~~~~~~~~~~~~
aligner.cpp:1874:10: warning: unused variable ‘ret’ [-Wunused-variable]
 1874 |   int i, ret;
      |          ^~~
In file included from aligner.h:25,
                 from aligner.cpp:25:
hash.h: In member function ‘int Aligner::initLookupArray()’:
hash.h:353:18: warning: ‘keySpan’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  353 |     widthKeySpan = keySpan;
      |     ~~~~~~~~~~~~~^~~~~~~~~
aligner.cpp:360:7: note: ‘keySpan’ was declared here
  360 |   int keySpan;
      |       ^~~~~~~
aligner.cpp: In member function ‘unsigned int Aligner::alignFirst(int64*, char*, strand, int, HitSet*, bool)’:
aligner.cpp:1097:3: warning: ‘ret’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1097 |   if (ret == MSG_HITSETFULL)
      |   ^~
aarch64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -Wno-write-strings interval.cpp
interval.cpp: In constructor ‘IntervalTree::IntervalTree(uint32, uint32)’:
interval.cpp:67:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
   67 |   for (int i = 0; i < numLevel - 1; i++) {
      |                   ~~^~~~~~~~~~~~~~
interval.cpp: In member function ‘int IntervalTree::save(char*)’:
interval.cpp:304:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
  304 |   if (ret != numLEntry) {
      |       ~~~~^~~~~~~~~~~~
interval.cpp:310:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
  310 |   if (ret != numIEntry) {
      |       ~~~~^~~~~~~~~~~~
interval.cpp: In member function ‘int IntervalTree::load(char*)’:
interval.cpp:359:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
  359 |   if (ret != numLEntry) {
      |       ~~~~^~~~~~~~~~~~
interval.cpp:370:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
  370 |   if (ret != numIEntry) {
      |       ~~~~^~~~~~~~~~~~
aarch64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -Wno-write-strings edit_distance.cpp
edit_distance.cpp: In function ‘scoreinfo edit_distance(char*, char*, int, int, char*, char*, int)’:
edit_distance.cpp:61:7: warning: unused variable ‘i’ [-Wunused-variable]
   61 |   int i;
      |       ^
edit_distance.cpp: In function ‘scoreinfo edit_distance_align(int**, char**, char*, char*, int, int, char*, char*, int)’:
edit_distance.cpp:181:10: warning: unused variable ‘tmp_trace’ [-Wunused-variable]
  181 |     char tmp_trace = traceback[i][j];
      |          ^~~~~~~~~
edit_distance.cpp:132:14: warning: unused variable ‘x’ [-Wunused-variable]
  132 |   int k = 0, x = 0, y = 0;
      |              ^
edit_distance.cpp:132:21: warning: unused variable ‘y’ [-Wunused-variable]
  132 |   int k = 0, x = 0, y = 0;
      |                     ^
edit_distance.cpp:178:7: warning: unused variable ‘kk’ [-Wunused-variable]
  178 |   int kk = 0;
      |       ^~
aarch64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -Wno-write-strings error.cpp
error.cpp: In function ‘void elog(int, char*, ...)’:
error.cpp:31:9: warning: unused variable ‘filename’ [-Wunused-variable]
   31 |   char *filename = __FILE__;
      |         ^~~~~~~~
error.cpp:32:7: warning: unused variable ‘lineno’ [-Wunused-variable]
   32 |   int lineno = __LINE__;
      |       ^~~~~~
aarch64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -Wno-write-strings short.cpp
short.cpp: In member function ‘int ShortRead::preProcess(int)’:
short.cpp:212:16: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  212 |     while (len = readLine(file, str, 256)) {
      |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
short.cpp: In member function ‘ShortRead** ShortRead::split(int)’:
short.cpp:483:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  483 |     if (szPartition <= nRead - curRead)
      |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
short.cpp: In member function ‘int ShortRead::load(int)’:
short.cpp:436:34: warning: ‘code’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  436 |                   | (reverse[code] << backward_offset);
      |                      ~~~~~~~~~~~~^
short.cpp: In member function ‘ShortRead** ShortRead::split(int)’:
short.cpp:503:45: warning: ‘.t’ directive writing 2 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
  503 |       sprintf(partitions[i]->alFileName, "%s.t%d", alFileName, i);
      |                                             ^~
short.cpp:503:42: note: directive argument in the range [0, 2147483646]
  503 |       sprintf(partitions[i]->alFileName, "%s.t%d", alFileName, i);
      |                                          ^~~~~~~~
short.cpp:503:14: note: ‘sprintf’ output between 4 and 268 bytes into a destination of size 256
  503 |       sprintf(partitions[i]->alFileName, "%s.t%d", alFileName, i);
      |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
short.cpp:510:45: warning: ‘.t’ directive writing 2 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
  510 |       sprintf(partitions[i]->unFileName, "%s.t%d", unFileName, i);
      |                                             ^~
short.cpp:510:42: note: directive argument in the range [0, 2147483646]
  510 |       sprintf(partitions[i]->unFileName, "%s.t%d", unFileName, i);
      |                                          ^~~~~~~~
short.cpp:510:14: note: ‘sprintf’ output between 4 and 268 bytes into a destination of size 256
  510 |       sprintf(partitions[i]->unFileName, "%s.t%d", unFileName, i);
      |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aarch64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -Wno-write-strings hitset.cpp
In file included from hitset.h:31,
                 from hitset.cpp:1:
pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’:
pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
  265 |     if (num > nError) {
      |         ~~~~^~~~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’:
pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable]
  602 |     int i, j, offset, min, tmp;
      |               ^~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’:
pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable]
  685 |     int a;
      |         ^
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’:
pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable]
  756 |     int a;
      |         ^
pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’:
pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  974 |     tmp.high = x.high ^ - x.high | (0LL - (x.low != 0));
      |                ~~~~~~~^~~~~~~~~~
In file included from hitset.cpp:1:
hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’:
hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
   86 |     int size;
      |         ^~~~
hitset.cpp: In member function ‘int HitPairSet::build(HitSet*, HitSet*, uint32, uint32, bool (*)[2], bool)’:
hitset.cpp:90:8: warning: unused variable ‘pairMatch’ [-Wunused-variable]
   90 |   bool pairMatch = false;
      |        ^~~~~~~~~
aarch64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -Wno-write-strings perfcounters.cpp
aarch64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -Wno-write-strings model.cpp
model.cpp: In static member function ‘static int AlignerModel::estimateNumPartition(unsigned int, int, int, bool)’:
model.cpp:76:16: warning: variable ‘nIndex’ set but not used [-Wunused-but-set-variable]
   76 |   unsigned int nIndex, nLookup, nBucket;
      |                ^~~~~~
model.cpp: In static member function ‘static unsigned int AlignerModel::getFreeMemory()’:
model.cpp:166:28: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=]
  166 |   fscanf(file, "MemTotal: %d kB\n", &memTotal);
      |                           ~^        ~~~~~~~~~
      |                            |        |
      |                            int*     unsigned int*
      |                           %d
model.cpp:167:27: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=]
  167 |   fscanf(file, "MemFree: %d kB\n", &memFree);
      |                          ~^        ~~~~~~~~
      |                           |        |
      |                           int*     unsigned int*
      |                          %d
model.cpp:168:27: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=]
  168 |   fscanf(file, "Buffers: %d kB\n", &memBuffer);
      |                          ~^        ~~~~~~~~~~
      |                           |        |
      |                           int*     unsigned int*
      |                          %d
model.cpp:169:26: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=]
  169 |   fscanf(file, "Cached: %d kB\n", &memCache);
      |                         ~^        ~~~~~~~~~
      |                          |        |
      |                          int*     unsigned int*
      |                         %d
model.cpp: In static member function ‘static unsigned int AlignerModel::estimateHashtableSpace(unsigned int, int, int, int)’:
model.cpp:198:26: warning: variable ‘p2’ set but not used [-Wunused-but-set-variable]
  198 |   double nSpace, p0, p1, p2;
      |                          ^~
aarch64-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -O3 -Wno-write-strings writer.cpp
In file included from hitset.h:31,
                 from writer.h:26,
                 from writer.cpp:21:
pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’:
pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
  265 |     if (num > nError) {
      |         ~~~~^~~~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’:
pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable]
  602 |     int i, j, offset, min, tmp;
      |               ^~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’:
pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable]
  685 |     int a;
      |         ^
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’:
pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable]
  756 |     int a;
      |         ^
pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’:
pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  974 |     tmp.high = x.high ^ - x.high | (0LL - (x.low != 0));
      |                ~~~~~~~^~~~~~~~~~
In file included from writer.h:26,
                 from writer.cpp:21:
hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’:
hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
   86 |     int size;
      |         ^~~~
writer.cpp: In member function ‘void SimpleWriter::writeField(int64*, int64*, strand)’:
writer.cpp:154:27: warning: suggest parentheses around ‘-’ in operand of ‘&’ [-Wparentheses]
  154 |     j = BITS_PER_LONGWORD - (length * BITS_PER_BASE) & BITS_LONGWORD_MASK;
writer.cpp:148:10: warning: unused variable ‘sid’ [-Wunused-variable]
  148 |   uint32 sid = 0, soffset = 0;
      |          ^~~
writer.cpp:148:19: warning: unused variable ‘soffset’ [-Wunused-variable]
  148 |   uint32 sid = 0, soffset = 0;
      |                   ^~~~~~~
writer.cpp: In member function ‘void SamWriter::writeValidAlignment(int, HitSet*)’:
writer.cpp:271:7: warning: unused variable ‘i’ [-Wunused-variable]
  271 |   int i, j, k, h, lastDiff;
      |       ^
writer.cpp:271:10: warning: unused variable ‘j’ [-Wunused-variable]
  271 |   int i, j, k, h, lastDiff;
      |          ^
writer.cpp:271:13: warning: unused variable ‘k’ [-Wunused-variable]
  271 |   int i, j, k, h, lastDiff;
      |             ^
writer.cpp:271:19: warning: unused variable ‘lastDiff’ [-Wunused-variable]
  271 |   int i, j, k, h, lastDiff;
      |                   ^~~~~~~~
writer.cpp:272:9: warning: unused variable ‘code1’ [-Wunused-variable]
  272 |   int64 code1, code2;
      |         ^~~~~
writer.cpp:272:16: warning: unused variable ‘code2’ [-Wunused-variable]
  272 |   int64 code1, code2;
      |                ^~~~~
writer.cpp:278:10: warning: unused variable ‘p’ [-Wunused-variable]
  278 |   double p, sump;
      |          ^
writer.cpp:278:13: warning: unused variable ‘sump’ [-Wunused-variable]
  278 |   double p, sump;
      |             ^~~~
writer.cpp:279:30: warning: unused variable ‘tag’ [-Wunused-variable]
  279 |   char qseq[128], rseq[128], tag[128];
      |                              ^~~
writer.cpp:281:8: warning: unused variable ‘shortread’ [-Wunused-variable]
  281 |   char shortread[256];
      |        ^~~~~~~~~
writer.cpp: In member function ‘void SamWriter::getCIGAR(char*, char*, char*, ErrorVector)’:
writer.cpp:382:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  382 |   for (i = 0, j = 0; i < strlen(query); i++, j++) {
      |                      ~~^~~~~~~~~~~~~~~
writer.cpp: In member function ‘void SamWriter::getMDfield(char*, char*, char*, ErrorVector)’:
writer.cpp:431:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘long unsigned int’} [-Wsign-compare]
  431 |   for (i = 0, j = 0; i < strlen(query); i++, j++) {
      |                      ~~^~~~~~~~~~~~~~~
writer.cpp: In member function ‘void SamPairWriter::writeValidAlignment(int, HitSet*)’:
writer.cpp:619:47: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
  619 |     if (!mate1Unmatch && !mate2Unmatch & sid1 == sid2) {
      |                                          ~~~~~^~~~~~~
aarch64-linux-gnu-gcc -o wham sequence.o hash.o embedhash.o main.o aligner.o interval.o edit_distance.o error.o short.o hitset.o model.o perfcounters.o writer.o -lpthread
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `CompactSequence::build(char**, int, int, int)':
./sequence.cpp:304: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./sequence.cpp:307: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./sequence.cpp:308: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./sequence.cpp:313: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::ostream::operator<<(long long)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::ostream::operator<<(long long)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::ctype<char>::widen(char) const':
/usr/aarch64-linux-gnu/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::ctype<char>::widen(char) const':
/usr/aarch64-linux-gnu/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `CompactSequence::build(char**, int, int, int)':
./sequence.cpp:304: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./sequence.cpp:307: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::ostream::operator<<(long long)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::ctype<char>::widen(char) const':
/usr/aarch64-linux-gnu/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `CompactSequence::load(char*)':
./sequence.cpp:830: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./sequence.cpp:830: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `_GLOBAL__sub_I__ZN15CompactSequenceC2Ev':
/usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o: in function `__static_initialization_and_destruction_0':
/usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: sequence.o:(.data.rel.local.DW.ref.__gxx_personality_v0[DW.ref.__gxx_personality_v0]+0x0): undefined reference to `__gxx_personality_v0'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `HashTable::~HashTable()':
./hash.cpp:74: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./hash.cpp:75: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `HashTable::nextPrime(unsigned int)':
./hash.cpp:1975: undefined reference to `sqrtl'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `__gnu_cxx::__promote_2<double, int, __gnu_cxx::__promote<double, std::__is_integer<double>::__value>::__type, __gnu_cxx::__promote<int, std::__is_integer<int>::__value>::__type>::__type std::pow<double, int>(double, int)':
/usr/aarch64-linux-gnu/include/c++/10/cmath:418: undefined reference to `pow'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `__gnu_cxx::__enable_if<std::__is_integer<unsigned int>::__value, double>::__type std::log<unsigned int>(unsigned int)':
/usr/aarch64-linux-gnu/include/c++/10/cmath:351: undefined reference to `log'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `HashTable::buildEmbedTable()':
./hash.cpp:486: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./hash.cpp:486: undefined reference to `operator delete[](void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `HashTable::sortList()':
./hash.cpp:1331: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::ostream::operator<<(long long)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `HashTable::sortList()':
./hash.cpp:1500: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `HashTable::sortList()':
./hash.cpp:1397: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./hash.cpp:1400: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::ctype<char>::widen(char) const':
/usr/aarch64-linux-gnu/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `HashTable::removeRepeat(unsigned int)':
./hash.cpp:1527: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::ostream::operator<<(long long)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `HashTable::removeRepeat(unsigned int)':
./hash.cpp:1666: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `HashTable::removeRepeat(unsigned int)':
./hash.cpp:1580: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./hash.cpp:1582: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `std::ctype<char>::widen(char) const':
/usr/aarch64-linux-gnu/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `HashTable::checkRepeat(unsigned int)':
./hash.cpp:1687: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./hash.cpp:1766: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./hash.cpp:1733: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./hash.cpp:1735: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `HashTable::nextPrime(unsigned int)':
./hash.cpp:1975: undefined reference to `sqrtl'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `_GLOBAL__sub_I_timePairAlign':
/usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: hash.o: in function `__static_initialization_and_destruction_0':
/usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: embedhash.o: in function `EmbedHashTable::~EmbedHashTable()':
./embedhash.cpp:47: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./embedhash.cpp:48: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: embedhash.o: in function `EmbedHashTable::nextPrime(unsigned int)':
./embedhash.cpp:700: undefined reference to `sqrtl'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: embedhash.o: in function `__gnu_cxx::__promote_2<double, int, __gnu_cxx::__promote<double, std::__is_integer<double>::__value>::__type, __gnu_cxx::__promote<int, std::__is_integer<int>::__value>::__type>::__type std::pow<double, int>(double, int)':
/usr/aarch64-linux-gnu/include/c++/10/cmath:418: undefined reference to `pow'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: embedhash.o: in function `EmbedHashTable::nextPrime(unsigned int)':
./embedhash.cpp:700: undefined reference to `sqrtl'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: embedhash.o: in function `_GLOBAL__sub_I_statEmbedHashLookup':
/usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: embedhash.o: in function `__static_initialization_and_destruction_0':
/usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `commaList(char*, int&)':
./main.cpp:115: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:119: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `getCommand(int, char**)':
./main.cpp:248: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:248: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:1438: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:1193: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned long)':
/usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:1193: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned long)':
/usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `void std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct<char*>(char*, char*, std::forward_iterator_tag)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned long)':
/usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_check_length(unsigned long, unsigned long, char const*) const':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `void std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct<char*>(char*, char*, std::forward_iterator_tag)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned long)':
/usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:1438: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned long)':
/usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned long)':
/usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:1438: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned long)':
/usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned long)':
/usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:1438: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned long, unsigned long, char const*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned long)':
/usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `void std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct<char*>(char*, char*, std::forward_iterator_tag)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o:/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.tcc:219: more undefined references to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned long&, unsigned long)' follow
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_check_length(unsigned long, unsigned long, char const*) const':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `void std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct<char*>(char*, char*, std::forward_iterator_tag)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o:/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.tcc:212: more undefined references to `std::__throw_logic_error(char const*)' follow
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned long)':
/usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `align(char*, AlignInfo*, char*, int)':
./main.cpp:368: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:436: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:437: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:438: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:495: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:496: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:497: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:368: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:436: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::basic_ios<char, std::char_traits<char> >::basic_ios()':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:462: undefined reference to `vtable for std::basic_ios<char, std::char_traits<char> >'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::basic_istream<char, std::char_traits<char> >::basic_istream()':
/usr/aarch64-linux-gnu/include/c++/10/istream:607: undefined reference to `VTT for std::basic_ifstream<char, std::char_traits<char> >'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/istream:607: undefined reference to `VTT for std::basic_ifstream<char, std::char_traits<char> >'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::basic_ios<char, std::char_traits<char> >::basic_ios()':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:462: undefined reference to `vtable for std::basic_ios<char, std::char_traits<char> >'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::basic_istream<char, std::char_traits<char> >::basic_istream()':
/usr/aarch64-linux-gnu/include/c++/10/istream:608: undefined reference to `std::basic_ios<char, std::char_traits<char> >::init(std::basic_streambuf<char, std::char_traits<char> >*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::basic_ifstream<char, std::char_traits<char> >::basic_ifstream(char const*, std::_Ios_Openmode)':
/usr/aarch64-linux-gnu/include/c++/10/fstream:530: undefined reference to `vtable for std::basic_ifstream<char, std::char_traits<char> >'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/fstream:530: undefined reference to `vtable for std::basic_ifstream<char, std::char_traits<char> >'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/fstream:530: undefined reference to `std::basic_filebuf<char, std::char_traits<char> >::basic_filebuf()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/fstream:532: undefined reference to `std::basic_ios<char, std::char_traits<char> >::init(std::basic_streambuf<char, std::char_traits<char> >*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::basic_ifstream<char, std::char_traits<char> >::open(char const*, std::_Ios_Openmode)':
/usr/aarch64-linux-gnu/include/c++/10/fstream:660: undefined reference to `std::basic_filebuf<char, std::char_traits<char> >::open(char const*, std::_Ios_Openmode)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/fstream:665: undefined reference to `std::basic_ios<char, std::char_traits<char> >::clear(std::_Ios_Iostate)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::istream::getline(char*, long)':
/usr/aarch64-linux-gnu/include/c++/10/istream:428: undefined reference to `std::istream::getline(char*, long, char)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::basic_ifstream<char, std::char_traits<char> >::close()':
/usr/aarch64-linux-gnu/include/c++/10/fstream:732: undefined reference to `std::basic_filebuf<char, std::char_traits<char> >::close()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::basic_filebuf<char, std::char_traits<char> >::~basic_filebuf()':
/usr/aarch64-linux-gnu/include/c++/10/fstream:252: undefined reference to `vtable for std::basic_filebuf<char, std::char_traits<char> >'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::basic_ifstream<char, std::char_traits<char> >::~basic_ifstream()':
/usr/aarch64-linux-gnu/include/c++/10/fstream:600: undefined reference to `vtable for std::basic_ifstream<char, std::char_traits<char> >'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::basic_filebuf<char, std::char_traits<char> >::~basic_filebuf()':
/usr/aarch64-linux-gnu/include/c++/10/fstream:252: undefined reference to `vtable for std::basic_filebuf<char, std::char_traits<char> >'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/fstream:249: undefined reference to `std::basic_filebuf<char, std::char_traits<char> >::close()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/fstream:252: undefined reference to `std::__basic_file<char>::~__basic_file()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::basic_streambuf<char, std::char_traits<char> >::~basic_streambuf()':
/usr/aarch64-linux-gnu/include/c++/10/streambuf:205: undefined reference to `vtable for std::basic_streambuf<char, std::char_traits<char> >'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/streambuf:205: undefined reference to `vtable for std::basic_streambuf<char, std::char_traits<char> >'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/streambuf:205: undefined reference to `std::locale::~locale()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::basic_ios<char, std::char_traits<char> >::~basic_ios()':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:282: undefined reference to `vtable for std::basic_ios<char, std::char_traits<char> >'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::ctype<char>::widen(char) const':
/usr/aarch64-linux-gnu/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::basic_ios<char, std::char_traits<char> >::setstate(std::_Ios_Iostate)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:158: undefined reference to `std::basic_ios<char, std::char_traits<char> >::clear(std::_Ios_Iostate)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:158: undefined reference to `std::basic_ios<char, std::char_traits<char> >::clear(std::_Ios_Iostate)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::basic_ifstream<char, std::char_traits<char> >::basic_ifstream(char const*, std::_Ios_Openmode)':
/usr/aarch64-linux-gnu/include/c++/10/fstream:530: undefined reference to `std::basic_filebuf<char, std::char_traits<char> >::~basic_filebuf()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::basic_ios<char, std::char_traits<char> >::~basic_ios()':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:282: undefined reference to `vtable for std::basic_ios<char, std::char_traits<char> >'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `getVersion(char*)':
./main.cpp:169: undefined reference to `std::basic_ifstream<char, std::char_traits<char> >::~basic_ifstream()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::basic_filebuf<char, std::char_traits<char> >::~basic_filebuf()':
/usr/aarch64-linux-gnu/include/c++/10/fstream:250: undefined reference to `__cxa_begin_catch'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/fstream:250: undefined reference to `__cxa_end_catch'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > std::operator+<char, std::char_traits<char>, std::allocator<char> >(char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.tcc:1172: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::reserve(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*, unsigned long)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:1225: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:1193: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_check_length(unsigned long, unsigned long, char const*) const':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned long)':
/usr/aarch64-linux-gnu/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `main':
./main.cpp:711: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:712: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:718: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:719: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:725: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:736: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:695: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:577: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:580: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:725: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./main.cpp:736: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `_GLOBAL__sub_I_pgversion':
/usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: main.o: in function `__static_initialization_and_destruction_0':
/usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::initLookupArray()':
./aligner.cpp:110: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:115: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:120: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:378: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:110: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::init(CompactSequence*, int, int, unsigned int, int, int, int, int, bool)':
./aligner.cpp:455: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:455: undefined reference to `operator delete[](void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::ostream::operator<<(long long)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::ctype<char>::widen(char) const':
/usr/aarch64-linux-gnu/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::ostream::operator<<(long long)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::ctype<char>::widen(char) const':
/usr/aarch64-linux-gnu/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::check(int)':
./aligner.cpp:1431: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::check(int)':
./aligner.cpp:1477: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::alignSingleEnd(AlignInfo*, char*)':
./aligner.cpp:1518: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1527: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1629: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::alignSingleEnd(AlignInfo*, char*)':
./aligner.cpp:1630: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `HitSet::getQual(int)':
./hitset.h:268: undefined reference to `log10'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::ostream::operator<<(long long)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::alignSingleEnd(AlignInfo*, char*)':
./aligner.cpp:1524: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::ctype<char>::widen(char) const':
/usr/aarch64-linux-gnu/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::alignSingleEnd(AlignInfo*, char*)':
./aligner.cpp:1527: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)':
./aligner.cpp:1656: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1657: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1658: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1669: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `HitPairSet::getQual(int)':
./hitset.h:328: undefined reference to `log10'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)':
./aligner.cpp:1751: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)':
./aligner.cpp:1752: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)':
./aligner.cpp:1753: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1754: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::ostream::operator<<(long long)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::cout'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/aarch64-linux-gnu/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)':
./aligner.cpp:1666: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::ctype<char>::widen(char) const':
/usr/aarch64-linux-gnu/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/aarch64-linux-gnu/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)':
./aligner.cpp:1669: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::mergeSingleEnd(AlignInfo*, int, char*)':
./aligner.cpp:1797: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1801: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1807: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `HitSet::getQual(int)':
./hitset.h:268: undefined reference to `log10'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::mergeSingleEnd(AlignInfo*, int, char*)':
./aligner.cpp:1851: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::mergeSingleEnd(AlignInfo*, int, char*)':
./aligner.cpp:1852: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1853: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1854: undefined reference to `operator delete[](void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1787: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1790: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1790: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1801: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::mergePairEnd(AlignInfo*, int, char*)':
./aligner.cpp:1898: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1899: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1901: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1907: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1908: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1914: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1915: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1888: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `HitPairSet::getQual(int)':
./hitset.h:328: undefined reference to `log10'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::mergePairEnd(AlignInfo*, int, char*)':
./aligner.cpp:1989: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::mergePairEnd(AlignInfo*, int, char*)':
./aligner.cpp:1990: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::mergePairEnd(AlignInfo*, int, char*)':
./aligner.cpp:1991: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::mergePairEnd(AlignInfo*, int, char*)':
./aligner.cpp:1992: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1993: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1994: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1995: undefined reference to `operator delete[](void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1996: undefined reference to `operator delete[](void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1915: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1892: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1892: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:1907: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::load(char*, int)':
./aligner.cpp:2134: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:2145: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:2163: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:2180: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:2180: undefined reference to `operator delete[](void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:2163: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:2134: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `Aligner::loadHead(char*)':
./aligner.cpp:2299: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:2310: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:2327: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:2333: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:2299: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:2333: undefined reference to `operator delete(void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./aligner.cpp:2327: undefined reference to `operator delete[](void*, unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `_GLOBAL__sub_I__ZN7AlignerC2Ev':
/usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o: in function `__static_initialization_and_destruction_0':
/usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o:(.data.rel.ro._ZTI6Writer[_ZTI6Writer]+0x0): undefined reference to `vtable for __cxxabiv1::__class_type_info'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o:(.data.rel.ro._ZTI12SimpleWriter[_ZTI12SimpleWriter]+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o:(.data.rel.ro._ZTI16SimplePairWriter[_ZTI16SimplePairWriter]+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o:(.data.rel.ro._ZTI13SamPairWriter[_ZTI13SamPairWriter]+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: aligner.o:(.data.rel.ro._ZTV6Writer[_ZTV6Writer]+0x18): undefined reference to `__cxa_pure_virtual'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: edit_distance.o: in function `_GLOBAL__sub_I_F':
/usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: edit_distance.o: in function `__static_initialization_and_destruction_0':
/usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: interval.o: in function `IntervalTree::IntervalTree(unsigned int, unsigned int)':
./interval.cpp:56: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./interval.cpp:57: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./interval.cpp:58: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: interval.o: in function `IntervalTree::load(char*)':
./interval.cpp:353: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./interval.cpp:364: undefined reference to `operator new[](unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: short.o:./short.cpp:93: more undefined references to `operator new[](unsigned long)' follow
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: short.o: in function `ShortRead::split(int)':
./short.cpp:481: undefined reference to `operator new(unsigned long)'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./short.cpp:478: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: model.o: in function `__gnu_cxx::__promote_2<double, int, __gnu_cxx::__promote<double, std::__is_integer<double>::__value>::__type, __gnu_cxx::__promote<int, std::__is_integer<int>::__value>::__type>::__type std::pow<double, int>(double, int)':
/usr/aarch64-linux-gnu/include/c++/10/cmath:418: undefined reference to `pow'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: model.o: in function `__gnu_cxx::__promote_2<double, unsigned int, __gnu_cxx::__promote<double, std::__is_integer<double>::__value>::__type, __gnu_cxx::__promote<unsigned int, std::__is_integer<unsigned int>::__value>::__type>::__type std::pow<double, unsigned int>(double, unsigned int)':
/usr/aarch64-linux-gnu/include/c++/10/cmath:418: undefined reference to `pow'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: /usr/aarch64-linux-gnu/include/c++/10/cmath:418: undefined reference to `pow'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: model.o: in function `__gnu_cxx::__promote_2<double, int, __gnu_cxx::__promote<double, std::__is_integer<double>::__value>::__type, __gnu_cxx::__promote<int, std::__is_integer<int>::__value>::__type>::__type std::pow<double, int>(double, int)':
/usr/aarch64-linux-gnu/include/c++/10/cmath:418: undefined reference to `pow'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: model.o: in function `__gnu_cxx::__promote_2<double, unsigned int, __gnu_cxx::__promote<double, std::__is_integer<double>::__value>::__type, __gnu_cxx::__promote<unsigned int, std::__is_integer<unsigned int>::__value>::__type>::__type std::pow<double, unsigned int>(double, unsigned int)':
/usr/aarch64-linux-gnu/include/c++/10/cmath:418: undefined reference to `pow'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: model.o:/usr/aarch64-linux-gnu/include/c++/10/cmath:418: more undefined references to `pow' follow
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: writer.o: in function `HitSet::getQual(int)':
./hitset.h:268: undefined reference to `log10'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./hitset.h:268: undefined reference to `log10'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: ./hitset.h:268: undefined reference to `log10'
/usr/lib/gcc-cross/aarch64-linux-gnu/10/../../../../aarch64-linux-gnu/bin/ld: writer.o:(.data.rel.ro._ZTI9SamWriter[_ZTI9SamWriter]+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info'
collect2: error: ld returned 1 exit status
make[1]: *** [makefile:19: wham] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc returned exit code 2
make: *** [debian/rules:9: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2020-07-25T21:45:09Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 3656
Build-Time: 14
Distribution: unstable
Fail-Stage: build
Foreign Architectures: arm64
Host Architecture: arm64
Install-Time: 20
Job: wham-align_0.1.5-3.1
Machine Architecture: amd64
Package: wham-align
Package-Time: 48
Source-Version: 0.1.5-3.1
Space: 3656
Status: attempted
Version: 0.1.5-3.1
--------------------------------------------------------------------------------
Finished at 2020-07-25T21:45:09Z
Build needed 00:00:48, 3656k disk space