sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | wham-align 0.1.5-6 (armhf) Sat, 09 Jan 2021 05:13:41 +0000 | +==============================================================================+ Package: wham-align Version: 0.1.5-6 Source Version: 0.1.5-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-925e6b44-fc60-4482-bb16-fc93b63ff1b7' with '<>' I: NOTICE: Log filtering will replace 'build/wham-align-6LeO7a/resolver-0L42Py' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [153 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2021-01-08-0800.32.pdiff [16.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2021-01-08-1400.40.pdiff [81.7 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2021-01-08-2000.27.pdiff [63.5 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2021-01-09-0201.46.pdiff [23.3 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2021-01-08-0800.32.pdiff [16.0 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2021-01-08-1400.40.pdiff [26.6 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2021-01-08-2000.27.pdiff [61.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2021-01-09-0201.46.pdiff [23.3 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2021-01-09-0201.46.pdiff [31.7 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2021-01-09-0201.46.pdiff [31.7 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main armhf Packages [8307 kB] Fetched 8837 kB in 2s (5645 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: apt dpkg findutils libapt-pkg6.0 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5690 kB of archives. After this operation, 400 kB of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg amd64 1.20.7 [2461 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 findutils amd64 4.7.0+git20210106-2 [697 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg6.0 amd64 2.1.16 [1049 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 apt amd64 2.1.16 [1483 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5690 kB in 0s (103 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10466 files and directories currently installed.) Preparing to unpack .../archives/dpkg_1.20.7_amd64.deb ... Unpacking dpkg (1.20.7) over (1.20.5) ... Setting up dpkg (1.20.7) ... Installing new version of config file /etc/cron.daily/dpkg ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10480 files and directories currently installed.) Preparing to unpack .../libapt-pkg6.0_2.1.16_amd64.deb ... Unpacking libapt-pkg6.0:amd64 (2.1.16) over (2.1.15) ... Setting up libapt-pkg6.0:amd64 (2.1.16) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10480 files and directories currently installed.) Preparing to unpack .../archives/apt_2.1.16_amd64.deb ... Unpacking apt (2.1.16) over (2.1.15) ... Setting up apt (2.1.16) ... Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ... Processing triggers for libc-bin (2.31-9) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'wham-align' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/wham-align.git Please use: git clone https://salsa.debian.org/med-team/wham-align.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 128 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main wham-align 0.1.5-6 (dsc) [1968 B] Get:2 http://debian.oregonstate.edu/debian unstable/main wham-align 0.1.5-6 (tar) [120 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main wham-align 0.1.5-6 (diff) [5908 B] Fetched 128 kB in 0s (785 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/wham-align-6LeO7a/wham-align-0.1.5' with '<>' I: NOTICE: Log filtering will replace 'build/wham-align-6LeO7a' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [411 B] Get:5 copy:/<>/apt_archive ./ Packages [498 B] Fetched 1866 B in 0s (76.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils build-essential cpp-10-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf-base gcc-10-base:armhf gcc-10-cross-base gcc-9-base:armhf gcc-arm-linux-gnueabihf gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan5:armhf libasan6-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-armhf-cross libgcc-9-dev:armhf libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libicu67 libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:armhf libnsl2:armhf libperl5.32 libpipeline1 libsigsegv2 libssl1.1:armhf libstdc++-10-dev libstdc++-10-dev-armhf-cross libstdc++-9-dev:armhf libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtirpc-dev libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db perl perl-modules-5.32 po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf glibc-doc manpages-dev:armhf gnupg git bzr krb5-doc:armhf krb5-user:armhf libstdc++-10-doc libstdc++-9-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:armhf libnss-nis:armhf libnss-nisplus:armhf libfile-fcntllock-perl libarchive-cpio-perl krb5-locales:armhf libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils build-essential cpp-10-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf-base gcc-10-base:armhf gcc-10-cross-base gcc-9-base:armhf gcc-arm-linux-gnueabihf gettext gettext-base groff-base help2man intltool-debian libarchive-zip-perl libasan5:armhf libasan6-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-armhf-cross libgcc-9-dev:armhf libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libicu67 libio-string-perl libk5crypto3:armhf libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:armhf libnsl2:armhf libperl5.32 libpipeline1 libsigsegv2 libssl1.1:armhf libstdc++-10-dev libstdc++-10-dev-armhf-cross libstdc++-9-dev:armhf libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtirpc-dev libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db perl perl-modules-5.32 po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils ucf 0 upgraded, 109 newly installed, 0 to remove and 0 not upgraded. Need to get 211 MB of archives. After this operation, 905 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [924 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-4 [145 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.0-6 [2820 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.0-6 [4105 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.0-6 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main armhf gcc-10-base armhf 10.2.1-3 [201 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.3.0-19 [198 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-3 [174 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-3 [33.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-14 [313 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.3-2 [814 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-3 [509 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.35.1-7 [2779 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.1-1 [190 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-9 [2346 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.1-3 [1742 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.1-3 [9376 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.7 [1535 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.7 [2147 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-arm-linux-gnueabihf-base amd64 10.2.1-1cross1 [201 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-arm-linux-gnueabihf amd64 10.2.1-1cross1 [44.1 MB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:10.2.0-1 [16.8 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.1-1cross1 [197 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.31-5cross1 [1092 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-armhf-cross all 10.2.1-1cross1 [36.3 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 10.2.1-1cross1 [82.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 10.2.1-1cross1 [6684 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-armhf-cross all 10.2.1-1cross1 [2010 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 10.2.1-1cross1 [381 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 10.2.1-1cross1 [744 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-armhf-cross all 10.2.1-1cross1 [694 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-arm-linux-gnueabihf amd64 10.2.1-1cross1 [50.3 MB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:10.2.0-1 [1464 B] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 5.9.11-1cross1 [1304 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.31-5cross1 [1843 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-armhf-cross all 10.2.1-1cross1 [1759 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-arm-linux-gnueabihf amd64 10.2.1-1cross1 [47.1 MB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:10.2.0-1 [1184 B] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-5 [8625 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.3+b1 [693 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.9 [6708 B] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.3.1 [188 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.182-3 [166 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13+20201015-2 [173 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-3 [1311 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.3.1 [1010 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.47.16 [181 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-s1 armhf 10.2.1-3 [36.1 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt1 armhf 1:4.4.17-1 [94.9 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.31-9 [2328 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.3.0-19 [370 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 10.2.1-3 [6928 B] Get:91 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 5.10.4-1 [1235 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt-dev armhf 1:4.4.17-1 [113 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armhf libcom-err2 armhf 1.45.6-1 [70.9 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5support0 armhf 1.18.3-4 [62.3 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armhf libk5crypto3 armhf 1.18.3-4 [110 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armhf libkeyutils1 armhf 1.6.1-2 [14.4 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armhf libssl1.1 armhf 1.1.1i-1 [1307 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5-3 armhf 1.18.3-4 [319 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armhf libgssapi-krb5-2 armhf 1.18.3-4 [143 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armhf libtirpc3 armhf 1.3.1-1 [72.1 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armhf libnsl2 armhf 1.3.0-2 [33.9 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armhf libtirpc-dev armhf 1.3.1-1 [182 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armhf libnsl-dev armhf 1.3.0-2 [62.1 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.31-9 [1874 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 10.2.1-3 [84.7 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 10.2.1-3 [421 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 10.2.1-3 [746 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-9-dev armhf 9.3.0-19 [660 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-9-dev armhf 9.3.0-19 [1761 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 211 MB in 2s (126 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10480 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-4_amd64.deb ... Unpacking bsdextrautils (2.36.1-4) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.0-6_all.deb ... Unpacking perl-modules-5.32 (5.32.0-6) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../006-libperl5.32_5.32.0-6_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.0-6) ... Selecting previously unselected package perl. Preparing to unpack .../007-perl_5.32.0-6_amd64.deb ... Unpacking perl (5.32.0-6) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../008-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package gcc-10-base:armhf. Preparing to unpack .../009-gcc-10-base_10.2.1-3_armhf.deb ... Unpacking gcc-10-base:armhf (10.2.1-3) ... Selecting previously unselected package gcc-9-base:armhf. Preparing to unpack .../010-gcc-9-base_9.3.0-19_armhf.deb ... Unpacking gcc-9-base:armhf (9.3.0-19) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../011-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... 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Selecting previously unselected package libicu67:amd64. Preparing to unpack .../056-libicu67_67.1-5_amd64.deb ... Unpacking libicu67:amd64 (67.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../057-libxml2_2.9.10+dfsg-6.3+b1_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.3+b1) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../058-libxml-namespacesupport-perl_1.12-1.1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1.1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../059-libxml-sax-base-perl_1.09-1.1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1.1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../060-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. 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Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../067-libdebian-dpkgcross-perl_2.6.15-3.1_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3.1) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../068-dpkg-cross_2.6.15-3.1_all.deb ... Unpacking dpkg-cross (2.6.15-3.1) ... Selecting previously unselected package crossbuild-essential-armhf. Preparing to unpack .../069-crossbuild-essential-armhf_12.9_all.deb ... Unpacking crossbuild-essential-armhf (12.9) ... Selecting previously unselected package libtool. Preparing to unpack .../070-libtool_2.4.6-14_all.deb ... Unpacking libtool (2.4.6-14) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../071-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../072-libdebhelper-perl_13.3.1_all.deb ... Unpacking libdebhelper-perl (13.3.1) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../073-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../074-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../075-libfile-stripnondeterminism-perl_1.9.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.9.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../076-dh-strip-nondeterminism_1.9.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.9.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../077-libelf1_0.182-3_amd64.deb ... Unpacking libelf1:amd64 (0.182-3) ... Selecting previously unselected package dwz. Preparing to unpack .../078-dwz_0.13+20201015-2_amd64.deb ... Unpacking dwz (0.13+20201015-2) ... Selecting previously unselected package gettext. Preparing to unpack .../079-gettext_0.21-3_amd64.deb ... Unpacking gettext (0.21-3) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../080-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../081-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../082-debhelper_13.3.1_all.deb ... Unpacking debhelper (13.3.1) ... Selecting previously unselected package help2man. Preparing to unpack .../083-help2man_1.47.16_amd64.deb ... Unpacking help2man (1.47.16) ... Selecting previously unselected package libgcc-s1:armhf. Preparing to unpack .../084-libgcc-s1_10.2.1-3_armhf.deb ... Unpacking libgcc-s1:armhf (10.2.1-3) ... Selecting previously unselected package libcrypt1:armhf. Preparing to unpack .../085-libcrypt1_1%3a4.4.17-1_armhf.deb ... Unpacking libcrypt1:armhf (1:4.4.17-1) ... Selecting previously unselected package libc6:armhf. Preparing to unpack .../086-libc6_2.31-9_armhf.deb ... Unpacking libc6:armhf (2.31-9) ... Selecting previously unselected package libasan5:armhf. Preparing to unpack .../087-libasan5_9.3.0-19_armhf.deb ... Unpacking libasan5:armhf (9.3.0-19) ... Selecting previously unselected package libatomic1:armhf. Preparing to unpack .../088-libatomic1_10.2.1-3_armhf.deb ... Unpacking libatomic1:armhf (10.2.1-3) ... Selecting previously unselected package linux-libc-dev:armhf. Preparing to unpack .../089-linux-libc-dev_5.10.4-1_armhf.deb ... Unpacking linux-libc-dev:armhf (5.10.4-1) ... Selecting previously unselected package libcrypt-dev:armhf. Preparing to unpack .../090-libcrypt-dev_1%3a4.4.17-1_armhf.deb ... Unpacking libcrypt-dev:armhf (1:4.4.17-1) ... Selecting previously unselected package libcom-err2:armhf. Preparing to unpack .../091-libcom-err2_1.45.6-1_armhf.deb ... Unpacking libcom-err2:armhf (1.45.6-1) ... Selecting previously unselected package libkrb5support0:armhf. Preparing to unpack .../092-libkrb5support0_1.18.3-4_armhf.deb ... Unpacking libkrb5support0:armhf (1.18.3-4) ... Selecting previously unselected package libk5crypto3:armhf. Preparing to unpack .../093-libk5crypto3_1.18.3-4_armhf.deb ... Unpacking libk5crypto3:armhf (1.18.3-4) ... Selecting previously unselected package libkeyutils1:armhf. Preparing to unpack .../094-libkeyutils1_1.6.1-2_armhf.deb ... Unpacking libkeyutils1:armhf (1.6.1-2) ... Selecting previously unselected package libssl1.1:armhf. Preparing to unpack .../095-libssl1.1_1.1.1i-1_armhf.deb ... Unpacking libssl1.1:armhf (1.1.1i-1) ... Selecting previously unselected package libkrb5-3:armhf. Preparing to unpack .../096-libkrb5-3_1.18.3-4_armhf.deb ... Unpacking libkrb5-3:armhf (1.18.3-4) ... 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Unpacking sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libc6-armhf-cross (2.31-5cross1) ... Setting up bsdextrautils (2.36.1-4) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-5) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up perl-modules-5.32 (5.32.0-6) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:armhf (5.10.4-1) ... Setting up gettext-base (0.21-3) ... Setting up file (1:5.39-3) ... Setting up gcc-10-base:armhf (10.2.1-3) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.15-3.1) ... Setting up libtirpc-dev:amd64 (1.3.1-1) ... Setting up libsigsegv2:amd64 (2.12-3) ... Setting up linux-libc-dev-armhf-cross (5.9.11-1cross1) ... Setting up autopoint (0.21-3) ... Setting up libperl5.32:amd64 (5.32.0-6) ... Setting up gcc-10-cross-base (10.2.1-1cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.31-9) ... Setting up binutils-arm-linux-gnueabihf (2.35.1-7) ... Setting up libelf1:amd64 (0.182-3) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.3+b1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up gcc-10-arm-linux-gnueabihf-base:amd64 (10.2.1-1cross1) ... Setting up gcc-9-base:armhf (9.3.0-19) ... Setting up libgomp1-armhf-cross (10.2.1-1cross1) ... Setting up gettext (0.21-3) ... Setting up libstdc++-10-dev:amd64 (10.2.1-3) ... Setting up g++-10 (10.2.1-3) ... Setting up libtool (2.4.6-14) ... Setting up libgcc-s1-armhf-cross (10.2.1-1cross1) ... Setting up libc6-dev-armhf-cross (2.31-5cross1) ... Setting up m4 (1.4.18-5) ... Setting up libatomic1-armhf-cross (10.2.1-1cross1) ... Setting up perl (5.32.0-6) ... Setting up libstdc++6-armhf-cross (10.2.1-1cross1) ... Setting up libasan6-armhf-cross (10.2.1-1cross1) ... Setting up cpp-10-arm-linux-gnueabihf (10.2.1-1cross1) ... Setting up libubsan1-armhf-cross (10.2.1-1cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.7) ... Setting up autoconf (2.69-14) ... Setting up g++ (4:10.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13+20201015-2) ... Setting up groff-base (1.22.4-5) ... Setting up libsub-override-perl (0.09-2) ... Setting up libgcc-10-dev-armhf-cross (10.2.1-1cross1) ... Setting up cpp-arm-linux-gnueabihf (4:10.2.0-1) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gcc-10-arm-linux-gnueabihf (10.2.1-1cross1) ... Setting up libstdc++-10-dev-armhf-cross (10.2.1-1cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.1) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.7) ... Setting up g++-10-arm-linux-gnueabihf (10.2.1-1cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up help2man (1.47.16) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up gcc-arm-linux-gnueabihf (4:10.2.0-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up g++-arm-linux-gnueabihf (4:10.2.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-armhf (12.9) ... Setting up libcrypt1:armhf (1:4.4.17-1) ... Setting up libgcc-s1:armhf (10.2.1-3) ... Setting up dh-autoreconf (19) ... Setting up libc6:armhf (2.31-9) ... Setting up libcrypt-dev:armhf (1:4.4.17-1) ... Setting up libstdc++6:armhf (10.2.1-3) ... Setting up libkeyutils1:armhf (1.6.1-2) ... Setting up libssl1.1:armhf (1.1.1i-1) ... Setting up debhelper (13.3.1) ... Setting up libcom-err2:armhf (1.45.6-1) ... Setting up libgomp1:armhf (10.2.1-3) ... Setting up libkrb5support0:armhf (1.18.3-4) ... Setting up libasan5:armhf (9.3.0-19) ... Setting up libatomic1:armhf (10.2.1-3) ... Setting up libk5crypto3:armhf (1.18.3-4) ... Setting up libubsan1:armhf (10.2.1-3) ... Setting up libkrb5-3:armhf (1.18.3-4) ... Setting up libgcc-9-dev:armhf (9.3.0-19) ... Setting up libgssapi-krb5-2:armhf (1.18.3-4) ... Setting up libtirpc3:armhf (1.3.1-1) ... Setting up libtirpc-dev:armhf (1.3.1-1) ... Setting up libnsl2:armhf (1.3.0-2) ... Setting up libnsl-dev:armhf (1.3.0-2) ... Setting up libc6-dev:armhf (2.31-9) ... Setting up libstdc++-9-dev:armhf (9.3.0-19) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.31-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-7 dpkg-dev_1.20.7 g++-10_10.2.1-3 gcc-10_10.2.1-3 libc6-dev_2.31-9 libstdc++-10-dev_10.2.1-3 libstdc++-10-dev-armhf-cross_10.2.1-1cross1 libstdc++-9-dev_9.3.0-19 libstdc++6_10.2.1-3 libstdc++6-armhf-cross_10.2.1-1cross1 linux-libc-dev_5.10.4-1 Package versions: adduser_3.118 apt_2.1.16 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11 base-passwd_3.5.48 bash_5.1-2 binutils_2.35.1-7 binutils-arm-linux-gnueabihf_2.35.1-7 binutils-common_2.35.1-7 binutils-x86-64-linux-gnu_2.35.1-7 bsdextrautils_2.36.1-4 bsdutils_1:2.36.1-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.0-1 cpp-10_10.2.1-3 cpp-10-arm-linux-gnueabihf_10.2.1-1cross1 cpp-8_8.4.0-5 cpp-arm-linux-gnueabihf_4:10.2.0-1 cross-config_2.6.15-3.1 crossbuild-essential-armhf_12.9 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.74 debhelper_13.3.1 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-5 dpkg_1.20.7 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.7 dwz_0.13+20201015-2 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-4 file_1:5.39-3 findutils_4.7.0+git20210106-2 g++_4:10.2.0-1 g++-10_10.2.1-3 g++-10-arm-linux-gnueabihf_10.2.1-1cross1 g++-arm-linux-gnueabihf_4:10.2.0-1 gcc_4:10.2.0-1 gcc-10_10.2.1-3 gcc-10-arm-linux-gnueabihf_10.2.1-1cross1 gcc-10-arm-linux-gnueabihf-base_10.2.1-1cross1 gcc-10-base_10.2.1-3 gcc-10-cross-base_10.2.1-1cross1 gcc-8-base_8.4.0-5 gcc-9-base_9.3.0-19 gcc-arm-linux-gnueabihf_4:10.2.0-1 gettext_0.21-3 gettext-base_0.21-3 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 help2man_1.47.16 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-9 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.16 libarchive-zip-perl_1.68-1 libasan5_9.3.0-19 libasan6_10.2.1-3 libasan6-armhf-cross_10.2.1-1cross1 libatomic1_10.2.1-3 libatomic1-armhf-cross_10.2.1-1cross1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.1-7 libblkid1_2.36.1-4 libbz2-1.0_1.0.8-4 libc-bin_2.31-9 libc-dev-bin_2.31-9 libc6_2.31-9 libc6-armhf-cross_2.31-5cross1 libc6-dev_2.31-9 libc6-dev-armhf-cross_2.31-5cross1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-3 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-7 libctf0_2.35.1-7 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.256 libdebhelper-perl_13.3.1 libdebian-dpkgcross-perl_2.6.15-3.1 libdpkg-perl_1.20.7 libelf1_0.182-3 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-4 libffi6_3.2.1-9 libffi7_3.3-5 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.1-3 libgcc-10-dev-armhf-cross_10.2.1-1cross1 libgcc-9-dev_9.3.0-19 libgcc-s1_10.2.1-3 libgcc-s1-armhf-cross_10.2.1-1cross1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.0-5 libgomp1_10.2.1-3 libgomp1-armhf-cross_10.2.1-1cross1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libicu67_67.1-5 libidn2-0_2.3.0-4 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.23-1 libitm1_10.2.1-3 libk5crypto3_1.18.3-4 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-4 libkrb5support0_1.18.3-4 liblocale-gettext-perl_1.07-4+b1 liblsan0_10.2.1-3 liblz4-1_1.9.3-1 liblzma5_5.2.5-1.0 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: wham-align Binary: wham-align Architecture: any Version: 0.1.5-6 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: http://research.cs.wisc.edu/wham Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/wham-align Vcs-Git: https://salsa.debian.org/med-team/wham-align.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man Package-List: wham-align deb science optional arch=any Checksums-Sha1: e1ecc46d4ab3af47518fbdee4b8efab2c7a89bb9 120296 wham-align_0.1.5.orig.tar.gz 6356ba5795250cfaa70afe4cd56f9d83c88b3876 5908 wham-align_0.1.5-6.debian.tar.xz Checksums-Sha256: c020b999c0d4a3a8e29b32e91dba559b6d6ce3a221081212689c9662828d7b02 120296 wham-align_0.1.5.orig.tar.gz 9794f6e23e2319adda0b25f1f18bf27309bca4992b2582fd1068ad66fac88a24 5908 wham-align_0.1.5-6.debian.tar.xz Files: 56e14e483b0fed5ae5faa4d1621ee3d7 120296 wham-align_0.1.5.orig.tar.gz 89d690a5e1fb2cbb5f3fa42bcbe014fe 5908 wham-align_0.1.5-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAl/3a9MACgkQeTz2fo8N Edo29w/9GoftTidOcWRhE5vuGmj0ulFbXghrJLjRorU6TkfBqdQA6id5q9rFfs/m 54i5r9UmK56mrOgviZfipGUHWi4IKwlggFOgBLUqpR5yBlfgzKTgYyDmBlONqAzC /A7066r9GOl5RDu81B2TRKVou2qTAB1gTW6hTinVNzzC/bG4UmU2WhMvRbqPvXbr dFfoDuSOcRttf3g9b53YH28wQ550v0jwyK+hpoPHLy5CMt8vAGhEIQgh+kQ5C7HE /CvhKpz12l3ayrEiwda66wCzjXtPU+tLAo/E1H2FBOTJuvoG0OwvPO7LQPRn94q1 D9CsQCGenSQ3zmpn7NIGbFyWv6AIsU0+xjJkf7fJsElQs+4aVYsgkjhETPHQZdDN 5n99B/IqXSSLL0rQ2yA3+Qdey3s0FXylkSlEk1oppwcSDHnWM3BeYWLw9BNLl1Hi yG4IzUHhoY7vA/Va4gN8g46D0v2pjyUbRCjjbN8Tgg72yDc6qkRT4ej5jSQzaLtq iQA2XeKsUAcy+79mCdVtDAAc+VavwBEXgc6nD3WjJ85GVMLHpyiHMrBMkp201428 CT2FFElKimnEn+jV061cqaW+UR78AOB7ep16JK4KNvSRNBiv6T+koeWgoUwJgE3O UXE4Ap9SWgmNj4m4zU0zICZtdKoIWGJo4vWXa+LAJjnoUfPh+Sw= =Mvln -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.QGTedvZY/trustedkeys.kbx': General error gpgv: Signature made Thu Jan 7 20:15:15 2021 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./wham-align_0.1.5-6.dsc dpkg-source: info: extracting wham-align in /<> dpkg-source: info: unpacking wham-align_0.1.5.orig.tar.gz dpkg-source: info: unpacking wham-align_0.1.5-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile.patch dpkg-source: info: applying non-x86.patch dpkg-source: info: applying spelling.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-925e6b44-fc60-4482-bb16-fc93b63ff1b7 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package wham-align dpkg-buildpackage: info: source version 0.1.5-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean install -d /<>/debian/.debhelper/generated/_source/home make -j1 clean make[2]: Entering directory '/<>' rm -f wham wham-build *.o make[2]: Leaving directory '/<>' rm -f debian/*.1 make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/wham-align.substvars debian/files rm -fr -- debian/wham-align/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a install -d /<>/debian/.debhelper/generated/_source/home dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc make[1]: Entering directory '/<>' arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings hash.cpp In file included from hitset.h:31, from hash.h:29, from hash.cpp:27: pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’: pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if (num > nError) { | ~~~~^~~~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’: pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable] 602 | int i, j, offset, min, tmp; | ^~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’: pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~ pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~~ pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable] 685 | int a; | ^ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’: pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~ pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~~ pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable] 756 | int a; | ^ pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’: pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 974 | tmp.high = x.high ^ - x.high | (0LL - (x.low != 0)); | ~~~~~~~^~~~~~~~~~ In file included from hash.h:29, from hash.cpp:27: hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’: hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 86 | int size; | ^~~~ In file included from hash.cpp:27: hash.h: In function ‘uint32 murmurHash(int64*, uint32)’: hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable] 86 | uint32 sum = 0; | ^~~ hash.cpp: In member function ‘int HashTable::preProcessEnd()’: hash.cpp:236:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32’ {aka ‘const unsigned int’} [-Wsign-compare] 236 | if (h >= nHistogram) | ~~^~~~~~~~~~~~~ hash.cpp:285:33: warning: comparison of integer expressions of different signedness: ‘uint32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 285 | if (useEmbedTables() && tmp > embedShreshold) { | ~~~~^~~~~~~~~~~~~~~~ hash.cpp: In member function ‘void HashTable::setScanThreshold(double)’: hash.cpp:343:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 343 | for (int i = 0; i < nHistogram - 1; i++) { | ~~^~~~~~~~~~~~~~~~ hash.cpp: In member function ‘void HashTable::insert(int64*, unsigned int)’: hash.cpp:460:38: warning: operation on ‘*(((HashTable*)this)->HashTable::overflowPool + ((sizetype)(curOverflowEntry * 4)))’ may be undefined [-Wsequence-point] 460 | overflowPool[curOverflowEntry] = hash.cpp:411:10: warning: unused variable ‘seqOffset’ [-Wunused-variable] 411 | uint32 seqOffset; | ^~~~~~~~~ hash.cpp:413:10: warning: unused variable ‘counter’ [-Wunused-variable] 413 | uint32 counter = 0; | ^~~~~~~ hash.cpp:414:11: warning: variable ‘seqVector’ set but not used [-Wunused-but-set-variable] 414 | int64 * seqVector; | ^~~~~~~~~ hash.cpp:416:11: warning: unused variable ‘target’ [-Wunused-variable] 416 | int64 * target = &tspace[8]; | ^~~~~~ hash.cpp:417:8: warning: unused variable ‘isBloomFilter’ [-Wunused-variable] 417 | bool isBloomFilter; | ^~~~~~~~~~~~~ hash.cpp:418:12: warning: unused variable ‘bloomFilter’ [-Wunused-variable] 418 | uint32 * bloomFilter; | ^~~~~~~~~~~ hash.cpp:419:10: warning: unused variable ‘bloomFilterNum’ [-Wunused-variable] 419 | uint32 bloomFilterNum; | ^~~~~~~~~~~~~~ hash.cpp: In member function ‘int HashTable::buildEmbedTable()’: hash.cpp:469:33: warning: unused variable ‘rest’ [-Wunused-variable] 469 | int64 * query = &ttspace[8], *rest = &ttspace[24], *rest1 = &ttspace[40], | ^~~~ hash.cpp:469:55: warning: unused variable ‘rest1’ [-Wunused-variable] 469 | int64 * query = &ttspace[8], *rest = &ttspace[24], *rest1 = &ttspace[40], | ^~~~~ hash.cpp:470:8: warning: unused variable ‘rest2’ [-Wunused-variable] 470 | *rest2 = &ttspace[56], *noheadkey = &ttspace[72]; | ^~~~~ hash.cpp:470:31: warning: unused variable ‘noheadkey’ [-Wunused-variable] 470 | *rest2 = &ttspace[56], *noheadkey = &ttspace[72]; | ^~~~~~~~~ hash.cpp:472:34: warning: variable ‘startOffset’ set but not used [-Wunused-but-set-variable] 472 | uint32 seqOffset, entryOffset, startOffset; | ^~~~~~~~~~~ hash.cpp: In member function ‘void HashTable::preinsertEmbedTableEntry(int64*, int, int)’: hash.cpp:587:11: warning: unused variable ‘noheadkey’ [-Wunused-variable] 587 | int64 * noheadkey = &tspace[8], *rest = &tspace[24]; | ^~~~~~~~~ hash.cpp:590:8: warning: unused variable ‘subkey4’ [-Wunused-variable] 590 | *subkey4 = &tspace[88], *subkey5 = &tspace[104]; | ^~~~~~~ hash.cpp:590:32: warning: unused variable ‘subkey5’ [-Wunused-variable] 590 | *subkey4 = &tspace[88], *subkey5 = &tspace[104]; | ^~~~~~~ hash.cpp: In member function ‘void HashTable::insertEmbedTableEntry(int64*, uint32, int, int)’: hash.cpp:662:11: warning: unused variable ‘noheadkey’ [-Wunused-variable] 662 | int64 * noheadkey = &tspace[8], *rest = &tspace[24]; | ^~~~~~~~~ hash.cpp:665:8: warning: unused variable ‘subkey4’ [-Wunused-variable] 665 | *subkey4 = &tspace[88], *subkey5 = &tspace[104]; | ^~~~~~~ hash.cpp:665:32: warning: unused variable ‘subkey5’ [-Wunused-variable] 665 | *subkey4 = &tspace[88], *subkey5 = &tspace[104]; | ^~~~~~~ hash.cpp: In member function ‘unsigned int HashTable::lookup(int64*, int64*, int, char*, strand, int, HitSet*, bool)’: hash.cpp:746:7: warning: unused variable ‘num’ [-Wunused-variable] 746 | int num; | ^~~ hash.cpp:750:11: warning: unused variable ‘diff’ [-Wunused-variable] 750 | int64 * diff = &tspace1[8], *target = &tspace2[8]; | ^~~~ hash.cpp:753:10: warning: unused variable ‘sid’ [-Wunused-variable] 753 | uint32 sid, soffset; | ^~~ hash.cpp:753:15: warning: unused variable ‘soffset’ [-Wunused-variable] 753 | uint32 sid, soffset; | ^~~~~~~ hash.cpp: In member function ‘unsigned int HashTable::lookupEmbedTable(int64*, uint32, int, char*, strand, int, HitSet*, bool)’: hash.cpp:962:11: warning: unused variable ‘noheadkey’ [-Wunused-variable] 962 | int64 * noheadkey = &tspace[8], *rest = &tspace[24]; | ^~~~~~~~~ hash.cpp:965:8: warning: unused variable ‘subkey4’ [-Wunused-variable] 965 | *subkey4 = &tspace[88], *subkey5 = &tspace[104]; | ^~~~~~~ hash.cpp:965:32: warning: unused variable ‘subkey5’ [-Wunused-variable] 965 | *subkey4 = &tspace[88], *subkey5 = &tspace[104]; | ^~~~~~~ hash.cpp:973:11: warning: unused variable ‘seqVector’ [-Wunused-variable] 973 | int64 * seqVector = sequence->getSequence(); | ^~~~~~~~~ hash.cpp: In member function ‘bool HashTable::lookup(int64*, uint32)’: hash.cpp:1052:7: warning: unused variable ‘num’ [-Wunused-variable] 1052 | int num; | ^~~ hash.cpp:1056:11: warning: unused variable ‘diff’ [-Wunused-variable] 1056 | int64 * diff = &tspace1[8], *target = &tspace2[8]; | ^~~~ hash.cpp:1056:32: warning: unused variable ‘target’ [-Wunused-variable] 1056 | int64 * diff = &tspace1[8], *target = &tspace2[8]; | ^~~~~~ hash.cpp:1057:11: warning: variable ‘seqVector’ set but not used [-Wunused-but-set-variable] 1057 | int64 * seqVector; | ^~~~~~~~~ hash.cpp:1059:10: warning: unused variable ‘sid’ [-Wunused-variable] 1059 | uint32 sid, soffset; | ^~~ hash.cpp:1059:15: warning: unused variable ‘soffset’ [-Wunused-variable] 1059 | uint32 sid, soffset; | ^~~~~~~ hash.cpp: In member function ‘uint32 HashTable::printOverflowList(uint32, uint32, int64*)’: hash.cpp:1184:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 1184 | for (int i = 0; i < keyOffset / BITS_PER_BASE; i++) hash.cpp:1188:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 1188 | for (int i = 0; i < (lenSeq - keyOffset - lenKey) / BITS_PER_BASE; i++) hash.cpp:1247:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 1247 | for (int j = 0; j < strlen(set[i].str); j++) | ~~^~~~~~~~~~~~~~~~~~~~ hash.cpp:1254:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 1254 | for (int j = 0; j < strlen(set[i].str); j++) | ~~^~~~~~~~~~~~~~~~~~~~ hash.cpp:1137:11: warning: unused variable ‘diff’ [-Wunused-variable] 1137 | int64 * diff = &tspace1[8], *target = &tspace2[8]; | ^~~~ hash.cpp: In member function ‘int HashTable::sortList()’: hash.cpp:1430:14: warning: variable ‘pool’ set but not used [-Wunused-but-set-variable] 1430 | uint32 * pool; | ^~~~ hash.cpp:1321:34: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable] 1321 | uint32 entryOffset, seqOffset, offset; | ^~~~~~ hash.cpp: In member function ‘void HashTable::checkRepeat(uint32)’: hash.cpp:1673:34: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable] 1673 | uint32 entryOffset, seqOffset, offset; | ^~~~~~ hash.cpp:1690:5: warning: label ‘restart’ defined but not used [-Wunused-label] 1690 | restart: if (buckets[bucketId] == HASH_EMPTY | ^~~~~~~ hash.cpp: In member function ‘unsigned int HashTable::lookupEmbedTable(int64*, uint32, int, char*, strand, int, HitSet*, bool)’: hash.cpp:1049:1: warning: control reaches end of non-void function [-Wreturn-type] 1049 | } | ^ In file included from hash.cpp:31: edit_distance.h: At global scope: edit_distance.h:25:18: warning: ‘obj_score_mat’ defined but not used [-Wunused-variable] 25 | static score_mat obj_score_mat = { 1, 1, 1, 1 }; | ^~~~~~~~~~~~~ In file included from pair.h:26, from hitset.h:31, from hash.h:29, from hash.cpp:27: rdtsc.h: In function ‘long long unsigned int curtick()’: rdtsc.h:32:10: warning: ‘tick’ is used uninitialized in this function [-Wuninitialized] 32 | return tick; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings embedhash.cpp In file included from hitset.h:31, from hash.h:29, from embedhash.cpp:27: pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’: pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if (num > nError) { | ~~~~^~~~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’: pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable] 602 | int i, j, offset, min, tmp; | ^~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’: pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~ pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~~ pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable] 685 | int a; | ^ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’: pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~ pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~~ pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable] 756 | int a; | ^ pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’: pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 974 | tmp.high = x.high ^ - x.high | (0LL - (x.low != 0)); | ~~~~~~~^~~~~~~~~~ In file included from hash.h:29, from embedhash.cpp:27: hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’: hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 86 | int size; | ^~~~ In file included from embedhash.cpp:27: hash.h: In function ‘uint32 murmurHash(int64*, uint32)’: hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable] 86 | uint32 sum = 0; | ^~~ embedhash.cpp: In member function ‘int EmbedHashTable::preProcessEnd()’: embedhash.cpp:137:16: warning: unused variable ‘ln2’ [-Wunused-variable] 137 | const double ln2 = log(2); | ^~~ embedhash.cpp: In member function ‘void EmbedHashTable::setScanThreshold(double)’: embedhash.cpp:253:9: warning: unused variable ‘sum’ [-Wunused-variable] 253 | int64 sum = 0; | ^~~ embedhash.cpp:255:9: warning: unused variable ‘top’ [-Wunused-variable] 255 | int64 top = total - total * r; | ^~~ embedhash.cpp: In member function ‘void EmbedHashTable::insert(int64*, unsigned int)’: embedhash.cpp:369:38: warning: operation on ‘*(((EmbedHashTable*)this)->EmbedHashTable::overflowPool + ((sizetype)(curOverflowEntry * 4)))’ may be undefined [-Wsequence-point] 369 | overflowPool[curOverflowEntry] = embedhash.cpp:328:10: warning: unused variable ‘seqOffset’ [-Wunused-variable] 328 | uint32 seqOffset; | ^~~~~~~~~ embedhash.cpp:330:10: warning: unused variable ‘counter’ [-Wunused-variable] 330 | uint32 counter = 0; | ^~~~~~~ embedhash.cpp:331:11: warning: variable ‘seqVector’ set but not used [-Wunused-but-set-variable] 331 | int64 * seqVector; | ^~~~~~~~~ embedhash.cpp:333:11: warning: unused variable ‘target’ [-Wunused-variable] 333 | int64 * target = &tspace[8]; | ^~~~~~ embedhash.cpp:334:8: warning: unused variable ‘isBloomFilter’ [-Wunused-variable] 334 | bool isBloomFilter; | ^~~~~~~~~~~~~ embedhash.cpp:335:12: warning: unused variable ‘bloomFilter’ [-Wunused-variable] 335 | uint32 * bloomFilter; | ^~~~~~~~~~~ embedhash.cpp:336:10: warning: unused variable ‘bloomFilterNum’ [-Wunused-variable] 336 | uint32 bloomFilterNum; | ^~~~~~~~~~~~~~ embedhash.cpp: In member function ‘unsigned int EmbedHashTable::lookup(int64*, int64*, int, char*, strand, int, HitSet*, bool)’: embedhash.cpp:385:7: warning: unused variable ‘num’ [-Wunused-variable] 385 | int num; | ^~~ embedhash.cpp:387:34: warning: variable ‘startOffset’ set but not used [-Wunused-but-set-variable] 387 | uint32 seqOffset, entryOffset, startOffset; | ^~~~~~~~~~~ embedhash.cpp:389:11: warning: unused variable ‘diff’ [-Wunused-variable] 389 | int64 * diff = &tspace1[8], *target = &tspace2[8]; | ^~~~ embedhash.cpp:392:10: warning: unused variable ‘sid’ [-Wunused-variable] 392 | uint32 sid, soffset; | ^~~ embedhash.cpp:392:15: warning: unused variable ‘soffset’ [-Wunused-variable] 392 | uint32 sid, soffset; | ^~~~~~~ In file included from embedhash.cpp:32: edit_distance.h: At global scope: edit_distance.h:25:18: warning: ‘obj_score_mat’ defined but not used [-Wunused-variable] 25 | static score_mat obj_score_mat = { 1, 1, 1, 1 }; | ^~~~~~~~~~~~~ In file included from pair.h:26, from hitset.h:31, from hash.h:29, from embedhash.cpp:27: rdtsc.h: In function ‘long long unsigned int curtick()’: rdtsc.h:32:10: warning: ‘tick’ is used uninitialized in this function [-Wuninitialized] 32 | return tick; | ^~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings main.cpp In file included from hitset.h:31, from hash.h:29, from aligner.h:25, from main.cpp:34: pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’: pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if (num > nError) { | ~~~~^~~~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’: pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable] 602 | int i, j, offset, min, tmp; | ^~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’: pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~ pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~~ pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable] 685 | int a; | ^ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’: pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~ pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~~ pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable] 756 | int a; | ^ pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’: pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 974 | tmp.high = x.high ^ - x.high | (0LL - (x.low != 0)); | ~~~~~~~^~~~~~~~~~ In file included from hash.h:29, from aligner.h:25, from main.cpp:34: hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’: hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 86 | int size; | ^~~~ In file included from aligner.h:25, from main.cpp:34: hash.h: In function ‘uint32 murmurHash(int64*, uint32)’: hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable] 86 | uint32 sum = 0; | ^~~ main.cpp: In function ‘int getArguVal(char*)’: main.cpp:159:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 159 | else if (*c = 'g' || *c == 'G') | ~~~^~~~~~~~~~~~~~~~~~ main.cpp: In function ‘int align(char*, AlignInfo*, char*, int)’: main.cpp:350:7: warning: unused variable ‘i’ [-Wunused-variable] 350 | int i, j, ret; | ^ main.cpp:350:10: warning: unused variable ‘j’ [-Wunused-variable] 350 | int i, j, ret; | ^ main.cpp: In function ‘int main(int, char**)’: main.cpp:523:7: warning: unused variable ‘numKeys’ [-Wunused-variable] 523 | int numKeys; | ^~~~~~~ main.cpp:526:7: warning: unused variable ‘nSeq’ [-Wunused-variable] 526 | int nSeq = 1; | ^~~~ main.cpp:532:21: warning: unused variable ‘sequence’ [-Wunused-variable] 532 | CompactSequence * sequence; | ^~~~~~~~ main.cpp:534:15: warning: unused variable ‘threadpool’ [-Wunused-variable] 534 | pthread_t * threadpool; | ^~~~~~~~~~ main.cpp:536:9: warning: unused variable ‘threadid’ [-Wunused-variable] 536 | int * threadid; | ^~~~~~~~ In file included from main.cpp:38: edit_distance.h: At global scope: edit_distance.h:25:18: warning: ‘obj_score_mat’ defined but not used [-Wunused-variable] 25 | static score_mat obj_score_mat = { 1, 1, 1, 1 }; | ^~~~~~~~~~~~~ main.cpp: In function ‘void mergeFiles(std::string)’: main.cpp:269:21: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 269 | sprintf(buf, ".t%d ", i); | ^~ main.cpp:269:18: note: directive argument in the range [0, 2147483647] 269 | sprintf(buf, ".t%d ", i); | ^~~~~~~ main.cpp:269:12: note: ‘sprintf’ output between 5 and 14 bytes into a destination of size 10 269 | sprintf(buf, ".t%d ", i); | ~~~~~~~^~~~~~~~~~~~~~~~~ main.cpp:276:21: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 276 | sprintf(buf, ".t%d", i); | ^~ main.cpp:276:18: note: directive argument in the range [0, 2147483647] 276 | sprintf(buf, ".t%d", i); | ^~~~~~ main.cpp:276:12: note: ‘sprintf’ output between 4 and 13 bytes into a destination of size 10 276 | sprintf(buf, ".t%d", i); | ~~~~~~~^~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings sequence.cpp In file included from hitset.h:31, from hash.h:29, from aligner.h:25, from sequence.cpp:30: pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’: pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if (num > nError) { | ~~~~^~~~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’: pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable] 602 | int i, j, offset, min, tmp; | ^~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’: pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~ pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~~ pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable] 685 | int a; | ^ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’: pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~ pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~~ pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable] 756 | int a; | ^ pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’: pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 974 | tmp.high = x.high ^ - x.high | (0LL - (x.low != 0)); | ~~~~~~~^~~~~~~~~~ In file included from hash.h:29, from aligner.h:25, from sequence.cpp:30: hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’: hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 86 | int size; | ^~~~ In file included from aligner.h:25, from sequence.cpp:30: hash.h: In function ‘uint32 murmurHash(int64*, uint32)’: hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable] 86 | uint32 sum = 0; | ^~~ sequence.cpp: In member function ‘void CompactSequence::extractFileName(char*, char*)’: sequence.cpp:97:10: warning: unused variable ‘str’ [-Wunused-variable] 97 | char * str; | ^~~ sequence.cpp: In member function ‘int CompactSequence::build(char**, int, int, int)’: sequence.cpp:238:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 238 | for (i = 0; i < numFile; i++) { | ~~^~~~~~~~~ sequence.cpp:309:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 309 | ( i = 0; i < nSeq; i++) | ~~^~~~~~ sequence.cpp:324:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 324 | for (i = 0; i < numFile; i++) { | ~~^~~~~~~~~ sequence.cpp:344:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 344 | for (j = 0; j < numError + 1; j++) { | ~~^~~~~~~~~~~~~~ sequence.cpp:410:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 410 | if (lenSegmentN > numError + 1) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~ sequence.cpp:429:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 429 | if (lenSegmentN > numError + 1) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~ sequence.cpp:223:16: warning: unused variable ‘step’ [-Wunused-variable] 223 | unsigned int step, nextstep; | ^~~~ sequence.cpp:223:22: warning: unused variable ‘nextstep’ [-Wunused-variable] 223 | unsigned int step, nextstep; | ^~~~~~~~ sequence.cpp: In member function ‘int CompactSequence::filter(Aligner*, char**, int, char*)’: sequence.cpp:534:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 534 | for (i = 0; i < numFile; i++) { | ~~^~~~~~~~~ sequence.cpp:599:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 599 | if (lenSegmentN > nError + 1) | ~~~~~~~~~~~~^~~~~~~~~~~~ sequence.cpp:520:16: warning: unused variable ‘step’ [-Wunused-variable] 520 | unsigned int step, nextstep; | ^~~~ sequence.cpp:520:22: warning: unused variable ‘nextstep’ [-Wunused-variable] 520 | unsigned int step, nextstep; | ^~~~~~~~ sequence.cpp:521:9: warning: unused variable ‘numFileChar’ [-Wunused-variable] 521 | int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment; | ^~~~~~~~~~~ sequence.cpp:521:22: warning: unused variable ‘numFileNSeg’ [-Wunused-variable] 521 | int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment; | ^~~~~~~~~~~ sequence.cpp:521:35: warning: unused variable ‘numFileSeq’ [-Wunused-variable] 521 | int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment; | ^~~~~~~~~~ sequence.cpp:521:47: warning: unused variable ‘nChar’ [-Wunused-variable] 521 | int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment; | ^~~~~ sequence.cpp:521:54: warning: unused variable ‘nNSegment’ [-Wunused-variable] 521 | int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment; | ^~~~~~~~~ sequence.cpp: In member function ‘int CompactSequence::save(char*)’: sequence.cpp:738:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 738 | if (ret != size) { | ~~~~^~~~~~~ sequence.cpp: In member function ‘int CompactSequence::load(char*)’: sequence.cpp:804:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 804 | if (ret != size) { | ~~~~^~~~~~~ sequence.cpp: In member function ‘int CompactSequence::build(char**, int, int, int)’: sequence.cpp:506:15: warning: ‘offsetInOrgSeq’ may be used uninitialized in this function [-Wmaybe-uninitialized] 506 | itree->flush(offsetInCmptSeq, 0, curSeq, offsetInOrgSeq); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequence.cpp: In static member function ‘static void CompactSequence::compose(char*, int, int64*)’: sequence.cpp:672:19: warning: ‘code’ may be used uninitialized in this function [-Wmaybe-uninitialized] 672 | | (code >> (forward_offset + BITS_PER_BASE - BITS_PER_LONGWORD)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings aligner.cpp In file included from hitset.h:31, from hash.h:29, from aligner.h:25, from aligner.cpp:25: pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’: pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if (num > nError) { | ~~~~^~~~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’: pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable] 602 | int i, j, offset, min, tmp; | ^~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’: pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~ pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~~ pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable] 685 | int a; | ^ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’: pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~ pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~~ pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable] 756 | int a; | ^ pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’: pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 974 | tmp.high = x.high ^ - x.high | (0LL - (x.low != 0)); | ~~~~~~~^~~~~~~~~~ In file included from hash.h:29, from aligner.h:25, from aligner.cpp:25: hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’: hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 86 | int size; | ^~~~ In file included from aligner.h:25, from aligner.cpp:25: hash.h: In function ‘uint32 murmurHash(int64*, uint32)’: hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable] 86 | uint32 sum = 0; | ^~~ aligner.cpp: In member function ‘int Aligner::initLookupArray()’: aligner.cpp:365:37: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] 365 | if ((indexBits[i] >> j) & 0x1 == 1) { | ~~~~^~~~ aligner.cpp:371:37: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] 371 | if ((indexBits[i] >> j) & 0x1 == 1) { | ~~~~^~~~ aligner.cpp: In member function ‘int Aligner::preProcessHashTables()’: aligner.cpp:534:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 534 | for (i = 0; i < nHashTable; i++) { | ~~^~~~~~~~~~~~ aligner.cpp:712:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 712 | for (i = 0; i < nHashTable; i++) { | ~~^~~~~~~~~~~~ aligner.cpp: In member function ‘int Aligner::build(char*)’: aligner.cpp:724:16: warning: unused variable ‘i’ [-Wunused-variable] 724 | unsigned int i, j; | ^ aligner.cpp:724:19: warning: unused variable ‘j’ [-Wunused-variable] 724 | unsigned int i, j; | ^ aligner.cpp: In member function ‘int Aligner::buildHashTables(char*)’: aligner.cpp:807:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 807 | for (i = 0; i < nHashTable; i++) { | ~~^~~~~~~~~~~~ aligner.cpp:844:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 844 | for (i1 = 0; i1 < lenPartition * (nPartition - 1); i1 += lenPartition) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:864:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 864 | for (i1 = 0; i1 < lenPartition * (nPartition - 2); i1 += lenPartition) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:871:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 871 | for (i2 = i1; i2 < lenPartition * (nPartition - 2); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:894:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 894 | for (i1 = 0; i1 < lenPartition * (nPartition - 3); i1 += lenPartition) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:901:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 901 | for (i2 = i1; i2 < lenPartition * (nPartition - 3); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:909:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 909 | for (i3 = i2; i3 < lenPartition * (nPartition - 3); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:928:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 928 | for (i1 = 0; i1 < lenPartition * (nPartition - 4); i1 += lenPartition) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:930:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 930 | for (i2 = i1; i2 < lenPartition * (nPartition - 4); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:933:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 933 | for (i3 = i2; i3 < lenPartition * (nPartition - 4); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:936:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 936 | for (i4 = i3; i4 < lenPartition * (nPartition - 4); i4 += | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:951:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 951 | for (i1 = 0; i1 < lenPartition * (nPartition - 5); i1 += lenPartition) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:953:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 953 | for (i2 = i1; i2 < lenPartition * (nPartition - 5); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:956:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 956 | for (i3 = i2; i3 < lenPartition * (nPartition - 5); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:959:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 959 | for (i4 = i3; i4 < lenPartition * (nPartition - 5); i4 += | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:962:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 962 | for (i5 = i4; i5 < lenPartition * (nPartition - 5); i5 += | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:983:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 983 | for (i = 0; i < nHashTable; i++) { | ~~^~~~~~~~~~~~ aligner.cpp:1006:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1006 | for (i = 0; i < nHashTable; i++) { | ~~^~~~~~~~~~~~ aligner.cpp: In member function ‘unsigned int Aligner::alignFirst(int64*, char*, strand, int, HitSet*, bool)’: aligner.cpp:1035:10: warning: unused variable ‘offset’ [-Wunused-variable] 1035 | uint32 offset; | ^~~~~~ aligner.cpp:1039:7: warning: unused variable ‘nHit’ [-Wunused-variable] 1039 | int nHit = 0; | ^~~~ aligner.cpp: In member function ‘unsigned int Aligner::align(int64*, char*, strand, int, HitSet*, bool, bool)’: aligner.cpp:1119:10: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable] 1119 | uint32 offset; | ^~~~~~ aligner.cpp:1123:7: warning: variable ‘nHit’ set but not used [-Wunused-but-set-variable] 1123 | int nHit = 0; | ^~~~ aligner.cpp: In member function ‘int Aligner::check(int)’: aligner.cpp:1436:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1436 | for (i = 0; i < num; i++) { | ~~^~~~~ aligner.cpp:1452:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1452 | for (j = 0; j < nError; j++) { | ~~^~~~~~~~ aligner.cpp:1426:7: warning: unused variable ‘ret’ [-Wunused-variable] 1426 | int ret; | ^~~ aligner.cpp: In member function ‘AlignRes Aligner::alignSingleEnd(AlignInfo*, char*)’: aligner.cpp:1541:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1541 | for (i = 0; i < nHashTable; i++) { | ~~^~~~~~~~~~~~ aligner.cpp:1547:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1547 | for (i = 0; i < res.nRead; i++) { | ~~^~~~~~~~~~~ aligner.cpp:1629:3: warning: deleting object of abstract class type ‘Writer’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor] 1629 | delete writer; | ^~~~~~~~~~~~~ aligner.cpp:1502:10: warning: unused variable ‘file’ [-Wunused-variable] 1502 | FILE * file = NULL, *alfile = NULL, *unfile = NULL; | ^~~~ aligner.cpp:1502:24: warning: unused variable ‘alfile’ [-Wunused-variable] 1502 | FILE * file = NULL, *alfile = NULL, *unfile = NULL; | ^~~~~~ aligner.cpp:1502:40: warning: unused variable ‘unfile’ [-Wunused-variable] 1502 | FILE * file = NULL, *alfile = NULL, *unfile = NULL; | ^~~~~~ aligner.cpp:1505:7: warning: unused variable ‘strand’ [-Wunused-variable] 1505 | int strand; | ^~~~~~ aligner.cpp:1508:9: warning: unused variable ‘ratio’ [-Wunused-variable] 1508 | float ratio; | ^~~~~ aligner.cpp:1514:31: warning: unused variable ‘strata’ [-Wunused-variable] 1514 | bool sorted = info->sorted, strata = info->strata; | ^~~~~~ aligner.cpp: In member function ‘AlignRes Aligner::alignPairEnd(AlignInfo*, char*)’: aligner.cpp:1685:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1685 | for (i = 0; i < res.nRead; i++) { | ~~^~~~~~~~~~~ aligner.cpp:1754:3: warning: deleting object of abstract class type ‘Writer’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor] 1754 | delete writer; | ^~~~~~~~~~~~~ aligner.cpp:1637:8: warning: unused variable ‘success’ [-Wunused-variable] 1637 | bool success; | ^~~~~~~ aligner.cpp:1638:16: warning: unused variable ‘nSuccessRead’ [-Wunused-variable] 1638 | unsigned int nSuccessRead = 0; | ^~~~~~~~~~~~ aligner.cpp:1639:10: warning: unused variable ‘file’ [-Wunused-variable] 1639 | FILE * file = NULL; | ^~~~ aligner.cpp:1646:8: warning: unused variable ‘mateFilename’ [-Wunused-variable] 1646 | char mateFilename[256]; | ^~~~~~~~~~~~ aligner.cpp:1652:31: warning: unused variable ‘strata’ [-Wunused-variable] 1652 | bool sorted = info->sorted, strata = info->strata; | ^~~~~~ aligner.cpp: In member function ‘AlignRes Aligner::mergeSingleEnd(AlignInfo*, int, char*)’: aligner.cpp:1851:3: warning: deleting object of abstract class type ‘Writer’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor] 1851 | delete writer; | ^~~~~~~~~~~~~ aligner.cpp:1775:10: warning: unused variable ‘ret’ [-Wunused-variable] 1775 | int i, ret; | ^~~ aligner.cpp: In member function ‘AlignRes Aligner::mergePairEnd(AlignInfo*, int, char*)’: aligner.cpp:1989:3: warning: deleting object of abstract class type ‘Writer’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor] 1989 | delete writer; | ^~~~~~~~~~~~~ aligner.cpp:1874:10: warning: unused variable ‘ret’ [-Wunused-variable] 1874 | int i, ret; | ^~~ In file included from aligner.h:25, from aligner.cpp:25: hash.h: In member function ‘int Aligner::initLookupArray()’: hash.h:353:18: warning: ‘keySpan’ may be used uninitialized in this function [-Wmaybe-uninitialized] 353 | widthKeySpan = keySpan; | ~~~~~~~~~~~~~^~~~~~~~~ aligner.cpp:360:7: note: ‘keySpan’ was declared here 360 | int keySpan; | ^~~~~~~ aligner.cpp: In member function ‘unsigned int Aligner::alignFirst(int64*, char*, strand, int, HitSet*, bool)’: aligner.cpp:1097:3: warning: ‘ret’ may be used uninitialized in this function [-Wmaybe-uninitialized] 1097 | if (ret == MSG_HITSETFULL) | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings interval.cpp interval.cpp: In constructor ‘IntervalTree::IntervalTree(uint32, uint32)’: interval.cpp:67:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 67 | for (int i = 0; i < numLevel - 1; i++) { | ~~^~~~~~~~~~~~~~ interval.cpp: In member function ‘int IntervalTree::save(char*)’: interval.cpp:304:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 304 | if (ret != numLEntry) { | ~~~~^~~~~~~~~~~~ interval.cpp:310:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 310 | if (ret != numIEntry) { | ~~~~^~~~~~~~~~~~ interval.cpp: In member function ‘int IntervalTree::load(char*)’: interval.cpp:359:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 359 | if (ret != numLEntry) { | ~~~~^~~~~~~~~~~~ interval.cpp:370:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 370 | if (ret != numIEntry) { | ~~~~^~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings edit_distance.cpp edit_distance.cpp: In function ‘scoreinfo edit_distance(char*, char*, int, int, char*, char*, int)’: edit_distance.cpp:61:7: warning: unused variable ‘i’ [-Wunused-variable] 61 | int i; | ^ edit_distance.cpp: In function ‘scoreinfo edit_distance_align(int**, char**, char*, char*, int, int, char*, char*, int)’: edit_distance.cpp:181:10: warning: unused variable ‘tmp_trace’ [-Wunused-variable] 181 | char tmp_trace = traceback[i][j]; | ^~~~~~~~~ edit_distance.cpp:132:14: warning: unused variable ‘x’ [-Wunused-variable] 132 | int k = 0, x = 0, y = 0; | ^ edit_distance.cpp:132:21: warning: unused variable ‘y’ [-Wunused-variable] 132 | int k = 0, x = 0, y = 0; | ^ edit_distance.cpp:178:7: warning: unused variable ‘kk’ [-Wunused-variable] 178 | int kk = 0; | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings error.cpp error.cpp: In function ‘void elog(int, char*, ...)’: error.cpp:31:9: warning: unused variable ‘filename’ [-Wunused-variable] 31 | char *filename = __FILE__; | ^~~~~~~~ error.cpp:32:7: warning: unused variable ‘lineno’ [-Wunused-variable] 32 | int lineno = __LINE__; | ^~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings short.cpp short.cpp: In member function ‘int ShortRead::preProcess(int)’: short.cpp:212:16: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 212 | while (len = readLine(file, str, 256)) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ short.cpp: In member function ‘ShortRead** ShortRead::split(int)’: short.cpp:483:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 483 | if (szPartition <= nRead - curRead) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ short.cpp: In member function ‘int ShortRead::load(int)’: short.cpp:436:34: warning: ‘code’ may be used uninitialized in this function [-Wmaybe-uninitialized] 436 | | (reverse[code] << backward_offset); | ~~~~~~~~~~~~^ short.cpp: In member function ‘ShortRead** ShortRead::split(int)’: short.cpp:503:45: warning: ‘.t’ directive writing 2 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 503 | sprintf(partitions[i]->alFileName, "%s.t%d", alFileName, i); | ^~ short.cpp:503:42: note: directive argument in the range [0, 536870910] 503 | sprintf(partitions[i]->alFileName, "%s.t%d", alFileName, i); | ^~~~~~~~ short.cpp:503:14: note: ‘sprintf’ output between 4 and 267 bytes into a destination of size 256 503 | sprintf(partitions[i]->alFileName, "%s.t%d", alFileName, i); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ short.cpp:510:45: warning: ‘.t’ directive writing 2 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 510 | sprintf(partitions[i]->unFileName, "%s.t%d", unFileName, i); | ^~ short.cpp:510:42: note: directive argument in the range [0, 536870910] 510 | sprintf(partitions[i]->unFileName, "%s.t%d", unFileName, i); | ^~~~~~~~ short.cpp:510:14: note: ‘sprintf’ output between 4 and 267 bytes into a destination of size 256 510 | sprintf(partitions[i]->unFileName, "%s.t%d", unFileName, i); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings hitset.cpp In file included from hitset.h:31, from hitset.cpp:1: pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’: pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if (num > nError) { | ~~~~^~~~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’: pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable] 602 | int i, j, offset, min, tmp; | ^~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’: pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~ pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~~ pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable] 685 | int a; | ^ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’: pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~ pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~~ pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable] 756 | int a; | ^ pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’: pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 974 | tmp.high = x.high ^ - x.high | (0LL - (x.low != 0)); | ~~~~~~~^~~~~~~~~~ In file included from hitset.cpp:1: hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’: hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 86 | int size; | ^~~~ hitset.cpp: In member function ‘int HitPairSet::build(HitSet*, HitSet*, uint32, uint32, bool (*)[2], bool)’: hitset.cpp:90:8: warning: unused variable ‘pairMatch’ [-Wunused-variable] 90 | bool pairMatch = false; | ^~~~~~~~~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings perfcounters.cpp arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings model.cpp model.cpp: In static member function ‘static int AlignerModel::estimateNumPartition(unsigned int, int, int, bool)’: model.cpp:76:16: warning: variable ‘nIndex’ set but not used [-Wunused-but-set-variable] 76 | unsigned int nIndex, nLookup, nBucket; | ^~~~~~ model.cpp: In static member function ‘static unsigned int AlignerModel::getFreeMemory()’: model.cpp:166:28: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 166 | fscanf(file, "MemTotal: %d kB\n", &memTotal); | ~^ ~~~~~~~~~ | | | | int* unsigned int* | %d model.cpp:167:27: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 167 | fscanf(file, "MemFree: %d kB\n", &memFree); | ~^ ~~~~~~~~ | | | | int* unsigned int* | %d model.cpp:168:27: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 168 | fscanf(file, "Buffers: %d kB\n", &memBuffer); | ~^ ~~~~~~~~~~ | | | | int* unsigned int* | %d model.cpp:169:26: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 169 | fscanf(file, "Cached: %d kB\n", &memCache); | ~^ ~~~~~~~~~ | | | | int* unsigned int* | %d model.cpp: In static member function ‘static unsigned int AlignerModel::estimateHashtableSpace(unsigned int, int, int, int)’: model.cpp:198:26: warning: variable ‘p2’ set but not used [-Wunused-but-set-variable] 198 | double nSpace, p0, p1, p2; | ^~ arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings writer.cpp In file included from hitset.h:31, from writer.h:26, from writer.cpp:21: pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’: pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if (num > nError) { | ~~~~^~~~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’: pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable] 602 | int i, j, offset, min, tmp; | ^~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’: pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~ pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~~ pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable] 685 | int a; | ^ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’: pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~ pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~~ pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable] 756 | int a; | ^ pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’: pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 974 | tmp.high = x.high ^ - x.high | (0LL - (x.low != 0)); | ~~~~~~~^~~~~~~~~~ In file included from writer.h:26, from writer.cpp:21: hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’: hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 86 | int size; | ^~~~ writer.cpp: In member function ‘void SimpleWriter::writeField(int64*, int64*, strand)’: writer.cpp:154:27: warning: suggest parentheses around ‘-’ in operand of ‘&’ [-Wparentheses] 154 | j = BITS_PER_LONGWORD - (length * BITS_PER_BASE) & BITS_LONGWORD_MASK; writer.cpp:148:10: warning: unused variable ‘sid’ [-Wunused-variable] 148 | uint32 sid = 0, soffset = 0; | ^~~ writer.cpp:148:19: warning: unused variable ‘soffset’ [-Wunused-variable] 148 | uint32 sid = 0, soffset = 0; | ^~~~~~~ writer.cpp: In member function ‘void SamWriter::writeValidAlignment(int, HitSet*)’: writer.cpp:271:7: warning: unused variable ‘i’ [-Wunused-variable] 271 | int i, j, k, h, lastDiff; | ^ writer.cpp:271:10: warning: unused variable ‘j’ [-Wunused-variable] 271 | int i, j, k, h, lastDiff; | ^ writer.cpp:271:13: warning: unused variable ‘k’ [-Wunused-variable] 271 | int i, j, k, h, lastDiff; | ^ writer.cpp:271:19: warning: unused variable ‘lastDiff’ [-Wunused-variable] 271 | int i, j, k, h, lastDiff; | ^~~~~~~~ writer.cpp:272:9: warning: unused variable ‘code1’ [-Wunused-variable] 272 | int64 code1, code2; | ^~~~~ writer.cpp:272:16: warning: unused variable ‘code2’ [-Wunused-variable] 272 | int64 code1, code2; | ^~~~~ writer.cpp:278:10: warning: unused variable ‘p’ [-Wunused-variable] 278 | double p, sump; | ^ writer.cpp:278:13: warning: unused variable ‘sump’ [-Wunused-variable] 278 | double p, sump; | ^~~~ writer.cpp:279:30: warning: unused variable ‘tag’ [-Wunused-variable] 279 | char qseq[128], rseq[128], tag[128]; | ^~~ writer.cpp:281:8: warning: unused variable ‘shortread’ [-Wunused-variable] 281 | char shortread[256]; | ^~~~~~~~~ writer.cpp: In member function ‘void SamWriter::getCIGAR(char*, char*, char*, ErrorVector)’: writer.cpp:382:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 382 | for (i = 0, j = 0; i < strlen(query); i++, j++) { | ~~^~~~~~~~~~~~~~~ writer.cpp: In member function ‘void SamWriter::getMDfield(char*, char*, char*, ErrorVector)’: writer.cpp:431:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 431 | for (i = 0, j = 0; i < strlen(query); i++, j++) { | ~~^~~~~~~~~~~~~~~ writer.cpp: In member function ‘void SamPairWriter::writeValidAlignment(int, HitSet*)’: writer.cpp:619:47: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] 619 | if (!mate1Unmatch && !mate2Unmatch & sid1 == sid2) { | ~~~~~^~~~~~~ arm-linux-gnueabihf-gcc -o wham sequence.o hash.o embedhash.o main.o aligner.o interval.o edit_distance.o error.o short.o hitset.o model.o perfcounters.o writer.o -lpthread /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `CompactSequence::build(char**, int, int, int)': ./sequence.cpp:304: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./sequence.cpp:307: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./sequence.cpp:308: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./sequence.cpp:313: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::ostream::operator<<(long long)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert(long long)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `CompactSequence::build(char**, int, int, int)': ./sequence.cpp:459: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::ostream::operator<<(long long)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert(long long)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `CompactSequence::build(char**, int, int, int)': ./sequence.cpp:497: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `CompactSequence::build(char**, int, int, int)': ./sequence.cpp:304: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./sequence.cpp:304: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./sequence.cpp:307: undefined reference to `__cxa_throw_bad_array_new_length' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./sequence.cpp:497: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::ostream::operator<<(long long)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert(long long)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `CompactSequence::filter(Aligner*, char**, int, char*)': ./sequence.cpp:573: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `CompactSequence::load(char*)': ./sequence.cpp:830: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./sequence.cpp:830: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./sequence.cpp:830: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o:(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o:(.ARM.extab+0x30): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `_GLOBAL__sub_I__ZN15CompactSequenceC2Ev': /usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::~HashTable()': ./hash.cpp:74: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:75: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `__gnu_cxx::__promote_2::__value>::__type, __gnu_cxx::__promote::__value>::__type>::__type std::pow(double, int)': /usr/arm-linux-gnueabihf/include/c++/10/cmath:418: undefined reference to `pow' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::nextPrime(unsigned int)': ./hash.cpp:1975: undefined reference to `sqrtl' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `__gnu_cxx::__enable_if::__value, double>::__type std::log(unsigned int)': /usr/arm-linux-gnueabihf/include/c++/10/cmath:351: undefined reference to `log' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::preProcessEnd()': ./hash.cpp:235: undefined reference to `ceil' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::buildEmbedTable()': ./hash.cpp:486: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:486: undefined reference to `operator delete[](void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:486: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::sortList()': ./hash.cpp:1331: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::ostream::operator<<(long long)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert(long long)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::sortList()': ./hash.cpp:1500: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1438: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1397: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1400: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::sortList()': ./hash.cpp:1397: undefined reference to `__cxa_throw_bad_array_new_length' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1397: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::removeRepeat(unsigned int)': ./hash.cpp:1527: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::ostream::operator<<(long long)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert(long long)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::removeRepeat(unsigned int)': ./hash.cpp:1666: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1593: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1580: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1582: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::removeRepeat(unsigned int)': ./hash.cpp:1580: undefined reference to `__cxa_throw_bad_array_new_length' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1580: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::checkRepeat(unsigned int)': ./hash.cpp:1687: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1733: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1735: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1733: undefined reference to `__cxa_throw_bad_array_new_length' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::nextPrime(unsigned int)': ./hash.cpp:1975: undefined reference to `sqrtl' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::checkRepeat(unsigned int)': ./hash.cpp:1766: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o:(.ARM.extab+0x30): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `_GLOBAL__sub_I_timePairAlign': /usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: embedhash.o: in function `EmbedHashTable::~EmbedHashTable()': ./embedhash.cpp:47: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./embedhash.cpp:48: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: embedhash.o: in function `__gnu_cxx::__promote_2::__value>::__type, __gnu_cxx::__promote::__value>::__type>::__type std::pow(double, int)': /usr/arm-linux-gnueabihf/include/c++/10/cmath:418: undefined reference to `pow' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: embedhash.o: in function `EmbedHashTable::nextPrime(unsigned int)': ./embedhash.cpp:700: undefined reference to `sqrtl' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./embedhash.cpp:700: undefined reference to `sqrtl' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: embedhash.o: in function `_GLOBAL__sub_I_statEmbedHashLookup': /usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: embedhash.o: in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `commaList(char*, int&)': ./main.cpp:115: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:119: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:115: undefined reference to `__cxa_throw_bad_array_new_length' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `getCommand(int, char**)': ./main.cpp:248: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::assign(char const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1438: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::append(char const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::append(std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1193: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator > std::operator+, std::allocator >(char const*, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:1164: undefined reference to `std::__cxx11::basic_string, std::allocator >::reserve(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::append(char const*, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1225: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::append(std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1193: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1193: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator > std::operator+, std::allocator >(char const*, std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:1164: undefined reference to `std::__cxx11::basic_string, std::allocator >::reserve(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::append(char const*, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1225: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::append(std::__cxx11::basic_string, std::allocator > const&)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1193: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::append(char const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::_M_check_length(unsigned int, unsigned int, char const*) const': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::_M_check_length(unsigned int, unsigned int, char const*) const': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:89: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::assign(char const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1438: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::append(char const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::append(char const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::assign(char const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1438: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::append(char const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::append(char const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_append(char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::assign(char const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1438: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o:/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:219: more undefined references to `std::__cxx11::basic_string, std::allocator >::_M_create(unsigned int&, unsigned int)' follow /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string, std::allocator >::_M_check_length(unsigned int, unsigned int, char const*) const': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `void std::__cxx11::basic_string, std::allocator >::_M_construct(char*, char*, std::forward_iterator_tag)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o:/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:212: more undefined references to `std::__throw_logic_error(char const*)' follow /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator::deallocate(char*, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator::~new_allocator()': /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:89: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `align(char*, AlignInfo*, char*, int)': ./main.cpp:368: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:436: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:437: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:438: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:495: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:496: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:497: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:368: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:368: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:436: undefined reference to `__cxa_throw_bad_array_new_length' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_ios >::basic_ios()': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_istream >::basic_istream()': /usr/arm-linux-gnueabihf/include/c++/10/istream:608: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_ifstream >::basic_ifstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabihf/include/c++/10/fstream:530: undefined reference to `std::basic_filebuf >::basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:532: undefined reference to `std::basic_ios >::init(std::basic_streambuf >*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_ifstream >::open(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabihf/include/c++/10/fstream:660: undefined reference to `std::basic_filebuf >::open(char const*, std::_Ios_Openmode)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:665: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::istream::getline(char*, int)': /usr/arm-linux-gnueabihf/include/c++/10/istream:428: undefined reference to `std::istream::getline(char*, int, char)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_ifstream >::close()': /usr/arm-linux-gnueabihf/include/c++/10/fstream:732: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabihf/include/c++/10/fstream:249: undefined reference to `std::basic_filebuf >::close()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:252: undefined reference to `std::__basic_file::~__basic_file()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_streambuf >::~basic_streambuf()': /usr/arm-linux-gnueabihf/include/c++/10/streambuf:205: undefined reference to `std::locale::~locale()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_ios >::setstate(std::_Ios_Iostate)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:158: undefined reference to `std::basic_ios >::clear(std::_Ios_Iostate)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_ifstream >::basic_ifstream(char const*, std::_Ios_Openmode)': /usr/arm-linux-gnueabihf/include/c++/10/fstream:530: undefined reference to `std::basic_filebuf >::~basic_filebuf()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_ios >::~basic_ios()': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:282: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `getVersion(char*)': ./main.cpp:169: undefined reference to `std::basic_ifstream >::~basic_ifstream()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:169: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_filebuf >::~basic_filebuf()': /usr/arm-linux-gnueabihf/include/c++/10/fstream:250: undefined reference to `__cxa_begin_catch' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:250: undefined reference to `__cxa_end_catch' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:250: undefined reference to `vtable for std::basic_ios >' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:250: undefined reference to `VTT for std::basic_ifstream >' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:250: undefined reference to `vtable for std::basic_ifstream >' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:250: undefined reference to `vtable for std::basic_filebuf >' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:250: undefined reference to `vtable for std::basic_streambuf >' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `getCommand(int, char**)': ./main.cpp:248: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o:(.ARM.extab+0x18): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o:(.ARM.extab+0x84): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o:(.ARM.extab+0x110): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o:(.ARM.extab+0x130): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `main': ./main.cpp:711: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:712: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:718: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:719: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:725: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:736: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:695: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:577: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:580: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:725: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:725: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:736: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:736: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `_GLOBAL__sub_I_pgversion': /usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o:(.ARM.extab.text.startup+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::initLookupArray()': ./aligner.cpp:110: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:115: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:120: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:378: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:110: undefined reference to `__cxa_throw_bad_array_new_length' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::init(CompactSequence*, int, int, unsigned int, int, int, int, int, bool)': ./aligner.cpp:455: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:455: undefined reference to `operator delete[](void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:455: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ostream::operator<<(long long)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert(long long)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `ProgressBar::update(long long)': ./util.h:90: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::preProcessHashTables()': ./aligner.cpp:636: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ostream::operator<<(long long)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert(long long)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `ProgressBar::update(long long)': ./util.h:90: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `ProgressBar::update(long long)': ./util.h:69: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::check(int)': ./aligner.cpp:1431: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()': ./hitset.h:112: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::check(int)': ./aligner.cpp:1477: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignSingleEnd(AlignInfo*, char*)': ./aligner.cpp:1518: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1527: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1629: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()': ./hitset.h:112: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignSingleEnd(AlignInfo*, char*)': ./aligner.cpp:1630: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::getQual(int)': ./hitset.h:268: undefined reference to `log10' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ostream::operator<<(long long)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert(long long)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignSingleEnd(AlignInfo*, char*)': ./aligner.cpp:1582: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignSingleEnd(AlignInfo*, char*)': ./aligner.cpp:1524: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignSingleEnd(AlignInfo*, char*)': ./aligner.cpp:1527: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1527: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1527: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)': ./aligner.cpp:1656: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1657: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1658: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1669: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitPairSet::getQual(int)': ./hitset.h:328: undefined reference to `log10' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()': ./hitset.h:112: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)': ./aligner.cpp:1751: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()': ./hitset.h:112: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)': ./aligner.cpp:1752: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()': ./hitset.h:112: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)': ./aligner.cpp:1753: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1754: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ostream::operator<<(long long)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert(long long)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::endl >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::operator<< >(std::basic_ostream >&, char const*)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream >& std::__ostream_insert >(std::basic_ostream >&, char const*, int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream >& std::flush >(std::basic_ostream >&)': /usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::init(CompactSequence*, int)': ./hitset.h:132: undefined reference to `std::cout' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)': ./aligner.cpp:1666: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ctype::widen(char) const': /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype::_M_widen_init() const' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ctype const& std::__check_facet >(std::ctype const*)': /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)': ./aligner.cpp:1669: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1669: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::mergeSingleEnd(AlignInfo*, int, char*)': ./aligner.cpp:1797: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1801: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1807: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::getQual(int)': ./hitset.h:268: undefined reference to `log10' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::mergeSingleEnd(AlignInfo*, int, char*)': ./aligner.cpp:1851: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()': ./hitset.h:112: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::mergeSingleEnd(AlignInfo*, int, char*)': ./aligner.cpp:1852: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1853: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1854: undefined reference to `operator delete[](void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1787: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1790: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1790: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1790: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1801: undefined reference to `__cxa_throw_bad_array_new_length' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::mergePairEnd(AlignInfo*, int, char*)': ./aligner.cpp:1898: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1899: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1901: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1907: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1908: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1914: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1915: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1888: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitPairSet::getQual(int)': ./hitset.h:328: undefined reference to `log10' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::mergePairEnd(AlignInfo*, int, char*)': ./aligner.cpp:1989: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()': ./hitset.h:112: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::mergePairEnd(AlignInfo*, int, char*)': ./aligner.cpp:1990: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()': ./hitset.h:112: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::mergePairEnd(AlignInfo*, int, char*)': ./aligner.cpp:1991: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()': ./hitset.h:112: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::mergePairEnd(AlignInfo*, int, char*)': ./aligner.cpp:1992: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1993: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1994: undefined reference to `operator delete[](void*)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1995: undefined reference to `operator delete[](void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1996: undefined reference to `operator delete[](void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1915: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1892: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1907: undefined reference to `__cxa_throw_bad_array_new_length' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1892: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1892: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::load(char*, int)': ./aligner.cpp:2134: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2145: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2163: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2180: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2180: undefined reference to `operator delete[](void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2180: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2134: undefined reference to `__cxa_throw_bad_array_new_length' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2163: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2163: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::loadHead(char*)': ./aligner.cpp:2299: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2310: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2327: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2333: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2299: undefined reference to `__cxa_throw_bad_array_new_length' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2333: undefined reference to `operator delete(void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2333: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2327: undefined reference to `operator delete[](void*, unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2327: undefined reference to `__cxa_end_cleanup' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.ARM.extab+0x54): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.ARM.extab+0x88): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.ARM.extab+0xbc): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.ARM.extab+0xf0): undefined reference to `__gxx_personality_v0' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.ARM.extab+0x124): more undefined references to `__gxx_personality_v0' follow /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `_GLOBAL__sub_I__ZN7AlignerC2Ev': /usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.data.rel.ro._ZTI6Writer[_ZTI6Writer]+0x0): undefined reference to `vtable for __cxxabiv1::__class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.data.rel.ro._ZTI12SimpleWriter[_ZTI12SimpleWriter]+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.data.rel.ro._ZTI16SimplePairWriter[_ZTI16SimplePairWriter]+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.data.rel.ro._ZTI13SamPairWriter[_ZTI13SamPairWriter]+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.data.rel.ro._ZTV6Writer[_ZTV6Writer]+0xc): undefined reference to `__cxa_pure_virtual' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: edit_distance.o: in function `_GLOBAL__sub_I_F': /usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: edit_distance.o: in function `__static_initialization_and_destruction_0': /usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: interval.o: in function `IntervalTree::IntervalTree(unsigned int, unsigned int)': ./interval.cpp:45: undefined reference to `ceil' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./interval.cpp:51: undefined reference to `ceil' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./interval.cpp:56: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./interval.cpp:57: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./interval.cpp:58: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./interval.cpp:56: undefined reference to `__cxa_throw_bad_array_new_length' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: interval.o: in function `IntervalTree::load(char*)': ./interval.cpp:353: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./interval.cpp:364: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./interval.cpp:353: undefined reference to `__cxa_throw_bad_array_new_length' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: short.o: in function `ShortRead::init(char**, int, bool, bool, char*, char*)': ./short.cpp:93: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./short.cpp:95: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./short.cpp:93: undefined reference to `__cxa_throw_bad_array_new_length' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: short.o: in function `ShortRead::split(int)': ./short.cpp:477: undefined reference to `ceil' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./short.cpp:478: undefined reference to `operator new[](unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./short.cpp:481: undefined reference to `operator new(unsigned int)' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./short.cpp:478: undefined reference to `__cxa_throw_bad_array_new_length' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: model.o: in function `__gnu_cxx::__promote_2::__value>::__type, __gnu_cxx::__promote::__value>::__type>::__type std::pow(double, int)': /usr/arm-linux-gnueabihf/include/c++/10/cmath:418: undefined reference to `pow' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: model.o: in function `__gnu_cxx::__promote_2::__value>::__type, __gnu_cxx::__promote::__value>::__type>::__type std::pow(double, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/10/cmath:418: undefined reference to `pow' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/cmath:418: undefined reference to `pow' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: model.o: in function `__gnu_cxx::__promote_2::__value>::__type, __gnu_cxx::__promote::__value>::__type>::__type std::pow(double, int)': /usr/arm-linux-gnueabihf/include/c++/10/cmath:418: undefined reference to `pow' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: model.o: in function `__gnu_cxx::__promote_2::__value>::__type, __gnu_cxx::__promote::__value>::__type>::__type std::pow(double, unsigned int)': /usr/arm-linux-gnueabihf/include/c++/10/cmath:418: undefined reference to `pow' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: model.o:/usr/arm-linux-gnueabihf/include/c++/10/cmath:418: more undefined references to `pow' follow /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: writer.o: in function `HitSet::getQual(int)': ./hitset.h:268: undefined reference to `log10' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hitset.h:268: undefined reference to `log10' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hitset.h:268: undefined reference to `log10' /usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: writer.o:(.data.rel.ro+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info' collect2: error: ld returned 1 exit status make[1]: *** [makefile:19: wham] Error 1 make[1]: Leaving directory '/<>' dh_auto_build: error: make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc returned exit code 2 make: *** [debian/rules:9: binary-arch] Error 25 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2021-01-09T05:14:49Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 2660 Build-Time: 19 Distribution: unstable Fail-Stage: build Foreign Architectures: armhf Host Architecture: armhf Install-Time: 35 Job: wham-align_0.1.5-6 Machine Architecture: amd64 Package: wham-align Package-Time: 68 Source-Version: 0.1.5-6 Space: 2660 Status: attempted Version: 0.1.5-6 -------------------------------------------------------------------------------- Finished at 2021-01-09T05:14:49Z Build needed 00:01:08, 2660k disk space