sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org

+==============================================================================+
| wham-align 0.1.5-6 (armhf)                   Sat, 09 Jan 2021 05:13:41 +0000 |
+==============================================================================+

Package: wham-align
Version: 0.1.5-6
Source Version: 0.1.5-6
Distribution: unstable
Machine Architecture: amd64
Host Architecture: armhf
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-925e6b44-fc60-4482-bb16-fc93b63ff1b7' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/wham-align-6LeO7a/resolver-0L42Py' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://debian.oregonstate.edu/debian unstable InRelease [153 kB]
Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2021-01-08-0800.32.pdiff [16.6 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2021-01-08-1400.40.pdiff [81.7 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2021-01-08-2000.27.pdiff [63.5 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2021-01-09-0201.46.pdiff [23.3 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2021-01-08-0800.32.pdiff [16.0 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2021-01-08-1400.40.pdiff [26.6 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2021-01-08-2000.27.pdiff [61.9 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main Sources 2021-01-09-0201.46.pdiff [23.3 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2021-01-09-0201.46.pdiff [31.7 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2021-01-09-0201.46.pdiff [31.7 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main armhf Packages [8307 kB]
Fetched 8837 kB in 2s (5645 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
  apt dpkg findutils libapt-pkg6.0
4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 5690 kB of archives.
After this operation, 400 kB of additional disk space will be used.
Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg amd64 1.20.7 [2461 kB]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 findutils amd64 4.7.0+git20210106-2 [697 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg6.0 amd64 2.1.16 [1049 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 apt amd64 2.1.16 [1483 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 5690 kB in 0s (103 MB/s)
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Preparing to unpack .../archives/dpkg_1.20.7_amd64.deb ...
Unpacking dpkg (1.20.7) over (1.20.5) ...
Setting up dpkg (1.20.7) ...
Installing new version of config file /etc/cron.daily/dpkg ...
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Preparing to unpack .../findutils_4.7.0+git20210106-2_amd64.deb ...
Unpacking findutils (4.7.0+git20210106-2) over (4.7.0+git20201010-2) ...
Setting up findutils (4.7.0+git20210106-2) ...
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Preparing to unpack .../libapt-pkg6.0_2.1.16_amd64.deb ...
Unpacking libapt-pkg6.0:amd64 (2.1.16) over (2.1.15) ...
Setting up libapt-pkg6.0:amd64 (2.1.16) ...
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Preparing to unpack .../archives/apt_2.1.16_amd64.deb ...
Unpacking apt (2.1.16) over (2.1.15) ...
Setting up apt (2.1.16) ...
Installing new version of config file /etc/kernel/postinst.d/apt-auto-removal ...
Processing triggers for libc-bin (2.31-9) ...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'wham-align' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/wham-align.git
Please use:
git clone https://salsa.debian.org/med-team/wham-align.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 128 kB of source archives.
Get:1 http://debian.oregonstate.edu/debian unstable/main wham-align 0.1.5-6 (dsc) [1968 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main wham-align 0.1.5-6 (tar) [120 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main wham-align 0.1.5-6 (diff) [5908 B]
Fetched 128 kB in 0s (785 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/wham-align-6LeO7a/wham-align-0.1.5' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/wham-align-6LeO7a' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper-compat (= 13), help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf
Filtered Build-Depends: debhelper-compat (= 13), help2man, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [411 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [498 B]
Fetched 1866 B in 0s (76.1 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf
  bsdextrautils build-essential cpp-10-arm-linux-gnueabihf
  cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper
  dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++
  g++-10 g++-10-arm-linux-gnueabihf g++-arm-linux-gnueabihf
  gcc-10-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf-base gcc-10-base:armhf
  gcc-10-cross-base gcc-9-base:armhf gcc-arm-linux-gnueabihf gettext
  gettext-base groff-base help2man intltool-debian libarchive-zip-perl
  libasan5:armhf libasan6-armhf-cross libatomic1:armhf libatomic1-armhf-cross
  libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf
  libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl
  libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf
  libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1
  libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl
  libgcc-10-dev-armhf-cross libgcc-9-dev:armhf libgcc-s1:armhf
  libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross
  libgssapi-krb5-2:armhf libicu67 libio-string-perl libk5crypto3:armhf
  libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf
  liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:armhf
  libnsl2:armhf libperl5.32 libpipeline1 libsigsegv2 libssl1.1:armhf
  libstdc++-10-dev libstdc++-10-dev-armhf-cross libstdc++-9-dev:armhf
  libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtirpc-dev
  libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf
  libubsan1-armhf-cross libuchardet0 libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
  libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf
  linux-libc-dev-armhf-cross m4 man-db perl perl-modules-5.32 po-debconf
  sensible-utils ucf
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales
  cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib
  g++-10-multilib gcc-10-doc manpages-dev flex bison gdb-arm-linux-gnueabihf
  gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf
  libc-l10n:armhf locales:armhf glibc-doc manpages-dev:armhf gnupg git bzr
  krb5-doc:armhf krb5-user:armhf libstdc++-10-doc libstdc++-9-doc:armhf
  libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc
  apparmor less www-browser perl-doc libterm-readline-gnu-perl
  | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl
Recommended packages:
  gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:armhf
  libnss-nis:armhf libnss-nisplus:armhf libfile-fcntllock-perl
  libarchive-cpio-perl krb5-locales:armhf libltdl-dev libwww-perl
  libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase
  libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf
  bsdextrautils build-essential cpp-10-arm-linux-gnueabihf
  cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper
  dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++
  g++-10 g++-10-arm-linux-gnueabihf g++-arm-linux-gnueabihf
  gcc-10-arm-linux-gnueabihf gcc-10-arm-linux-gnueabihf-base gcc-10-base:armhf
  gcc-10-cross-base gcc-9-base:armhf gcc-arm-linux-gnueabihf gettext
  gettext-base groff-base help2man intltool-debian libarchive-zip-perl
  libasan5:armhf libasan6-armhf-cross libatomic1:armhf libatomic1-armhf-cross
  libc6:armhf libc6-armhf-cross libc6-dev libc6-dev:armhf
  libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl
  libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armhf libcrypt1:armhf
  libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1
  libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl
  libgcc-10-dev-armhf-cross libgcc-9-dev:armhf libgcc-s1:armhf
  libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross
  libgssapi-krb5-2:armhf libicu67 libio-string-perl libk5crypto3:armhf
  libkeyutils1:armhf libkrb5-3:armhf libkrb5support0:armhf
  liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:armhf
  libnsl2:armhf libperl5.32 libpipeline1 libsigsegv2 libssl1.1:armhf
  libstdc++-10-dev libstdc++-10-dev-armhf-cross libstdc++-9-dev:armhf
  libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtirpc-dev
  libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf
  libubsan1-armhf-cross libuchardet0 libxml-libxml-perl
  libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl
  libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf
  linux-libc-dev-armhf-cross m4 man-db perl perl-modules-5.32 po-debconf
  sbuild-build-depends-main-dummy:armhf sensible-utils ucf
0 upgraded, 109 newly installed, 0 to remove and 0 not upgraded.
Need to get 211 MB of archives.
After this operation, 905 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [924 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-4 [145 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.0-6 [2820 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.0-6 [4105 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.0-6 [293 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main armhf gcc-10-base armhf 10.2.1-3 [201 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.3.0-19 [198 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-3 [174 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-3 [33.0 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-14 [313 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.3-2 [814 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-3 [509 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.35.1-7 [2779 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.1-1 [190 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-9 [2346 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.1-3 [1742 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.1-3 [9376 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B]
Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.7 [1535 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.7 [2147 kB]
Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B]
Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-arm-linux-gnueabihf-base amd64 10.2.1-1cross1 [201 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-arm-linux-gnueabihf amd64 10.2.1-1cross1 [44.1 MB]
Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:10.2.0-1 [16.8 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.1-1cross1 [197 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.31-5cross1 [1092 kB]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-armhf-cross all 10.2.1-1cross1 [36.3 kB]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 10.2.1-1cross1 [82.6 kB]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 10.2.1-1cross1 [6684 B]
Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-armhf-cross all 10.2.1-1cross1 [2010 kB]
Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 10.2.1-1cross1 [381 kB]
Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 10.2.1-1cross1 [744 kB]
Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-armhf-cross all 10.2.1-1cross1 [694 kB]
Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-arm-linux-gnueabihf amd64 10.2.1-1cross1 [50.3 MB]
Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:10.2.0-1 [1464 B]
Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 5.9.11-1cross1 [1304 kB]
Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.31-5cross1 [1843 kB]
Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-armhf-cross all 10.2.1-1cross1 [1759 kB]
Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-arm-linux-gnueabihf amd64 10.2.1-1cross1 [47.1 MB]
Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:10.2.0-1 [1184 B]
Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB]
Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB]
Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-5 [8625 kB]
Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.3+b1 [693 kB]
Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB]
Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB]
Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB]
Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB]
Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB]
Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB]
Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB]
Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB]
Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB]
Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB]
Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB]
Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.9 [6708 B]
Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB]
Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB]
Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.3.1 [188 kB]
Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB]
Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB]
Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB]
Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.182-3 [166 kB]
Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13+20201015-2 [173 kB]
Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-3 [1311 kB]
Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.3.1 [1010 kB]
Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 help2man amd64 1.47.16 [181 kB]
Get:86 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-s1 armhf 10.2.1-3 [36.1 kB]
Get:87 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt1 armhf 1:4.4.17-1 [94.9 kB]
Get:88 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.31-9 [2328 kB]
Get:89 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.3.0-19 [370 kB]
Get:90 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 10.2.1-3 [6928 B]
Get:91 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 5.10.4-1 [1235 kB]
Get:92 http://debian.oregonstate.edu/debian unstable/main armhf libcrypt-dev armhf 1:4.4.17-1 [113 kB]
Get:93 http://debian.oregonstate.edu/debian unstable/main armhf libcom-err2 armhf 1.45.6-1 [70.9 kB]
Get:94 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5support0 armhf 1.18.3-4 [62.3 kB]
Get:95 http://debian.oregonstate.edu/debian unstable/main armhf libk5crypto3 armhf 1.18.3-4 [110 kB]
Get:96 http://debian.oregonstate.edu/debian unstable/main armhf libkeyutils1 armhf 1.6.1-2 [14.4 kB]
Get:97 http://debian.oregonstate.edu/debian unstable/main armhf libssl1.1 armhf 1.1.1i-1 [1307 kB]
Get:98 http://debian.oregonstate.edu/debian unstable/main armhf libkrb5-3 armhf 1.18.3-4 [319 kB]
Get:99 http://debian.oregonstate.edu/debian unstable/main armhf libgssapi-krb5-2 armhf 1.18.3-4 [143 kB]
Get:100 http://debian.oregonstate.edu/debian unstable/main armhf libtirpc3 armhf 1.3.1-1 [72.1 kB]
Get:101 http://debian.oregonstate.edu/debian unstable/main armhf libnsl2 armhf 1.3.0-2 [33.9 kB]
Get:102 http://debian.oregonstate.edu/debian unstable/main armhf libtirpc-dev armhf 1.3.1-1 [182 kB]
Get:103 http://debian.oregonstate.edu/debian unstable/main armhf libnsl-dev armhf 1.3.0-2 [62.1 kB]
Get:104 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.31-9 [1874 kB]
Get:105 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 10.2.1-3 [84.7 kB]
Get:106 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 10.2.1-3 [421 kB]
Get:107 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 10.2.1-3 [746 kB]
Get:108 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-9-dev armhf 9.3.0-19 [660 kB]
Get:109 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-9-dev armhf 9.3.0-19 [1761 kB]
debconf: delaying package configuration, since apt-utils is not installed
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update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...

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Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
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Setting up libkrb5-3:armhf (1.18.3-4) ...
Setting up libgcc-9-dev:armhf (9.3.0-19) ...
Setting up libgssapi-krb5-2:armhf (1.18.3-4) ...
Setting up libtirpc3:armhf (1.3.1-1) ...
Setting up libtirpc-dev:armhf (1.3.1-1) ...
Setting up libnsl2:armhf (1.3.0-2) ...
Setting up libnsl-dev:armhf (1.3.0-2) ...
Setting up libc6-dev:armhf (2.31-9) ...
Setting up libstdc++-9-dev:armhf (9.3.0-19) ...
Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ...
Processing triggers for libc-bin (2.31-9) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (armhf included in any)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) amd64 (x86_64)
Toolchain package versions: binutils_2.35.1-7 dpkg-dev_1.20.7 g++-10_10.2.1-3 gcc-10_10.2.1-3 libc6-dev_2.31-9 libstdc++-10-dev_10.2.1-3 libstdc++-10-dev-armhf-cross_10.2.1-1cross1 libstdc++-9-dev_9.3.0-19 libstdc++6_10.2.1-3 libstdc++6-armhf-cross_10.2.1-1cross1 linux-libc-dev_5.10.4-1
Package versions: adduser_3.118 apt_2.1.16 autoconf_2.69-14 automake_1:1.16.3-2 autopoint_0.21-3 autotools-dev_20180224.1+nmu1 base-files_11 base-passwd_3.5.48 bash_5.1-2 binutils_2.35.1-7 binutils-arm-linux-gnueabihf_2.35.1-7 binutils-common_2.35.1-7 binutils-x86-64-linux-gnu_2.35.1-7 bsdextrautils_2.36.1-4 bsdutils_1:2.36.1-4 build-essential_12.9 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.0-1 cpp-10_10.2.1-3 cpp-10-arm-linux-gnueabihf_10.2.1-1cross1 cpp-8_8.4.0-5 cpp-arm-linux-gnueabihf_4:10.2.0-1 cross-config_2.6.15-3.1 crossbuild-essential-armhf_12.9 dash_0.5.11+git20200708+dd9ef66-5 debconf_1.5.74 debhelper_13.3.1 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-5 dpkg_1.20.7 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.7 dwz_0.13+20201015-2 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-4 file_1:5.39-3 findutils_4.7.0+git20210106-2 g++_4:10.2.0-1 g++-10_10.2.1-3 g++-10-arm-linux-gnueabihf_10.2.1-1cross1 g++-arm-linux-gnueabihf_4:10.2.0-1 gcc_4:10.2.0-1 gcc-10_10.2.1-3 gcc-10-arm-linux-gnueabihf_10.2.1-1cross1 gcc-10-arm-linux-gnueabihf-base_10.2.1-1cross1 gcc-10-base_10.2.1-3 gcc-10-cross-base_10.2.1-1cross1 gcc-8-base_8.4.0-5 gcc-9-base_9.3.0-19 gcc-arm-linux-gnueabihf_4:10.2.0-1 gettext_0.21-3 gettext-base_0.21-3 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 help2man_1.47.16 hostname_3.23 init-system-helpers_1.60 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-9 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.16 libarchive-zip-perl_1.68-1 libasan5_9.3.0-19 libasan6_10.2.1-3 libasan6-armhf-cross_10.2.1-1cross1 libatomic1_10.2.1-3 libatomic1-armhf-cross_10.2.1-1cross1 libattr1_1:2.4.48-6 libaudit-common_1:3.0-2 libaudit1_1:3.0-2 libbinutils_2.35.1-7 libblkid1_2.36.1-4 libbz2-1.0_1.0.8-4 libc-bin_2.31-9 libc-dev-bin_2.31-9 libc6_2.31-9 libc6-armhf-cross_2.31-5cross1 libc6-dev_2.31-9 libc6-dev-armhf-cross_2.31-5cross1 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-3 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-7 libctf0_2.35.1-7 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.256 libdebhelper-perl_13.3.1 libdebian-dpkgcross-perl_2.6.15-3.1 libdpkg-perl_1.20.7 libelf1_0.182-3 libext2fs2_1.45.6-1 libfakeroot_1.25.3-1.1 libfdisk1_2.36.1-4 libffi6_3.2.1-9 libffi7_3.3-5 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.1-3 libgcc-10-dev-armhf-cross_10.2.1-1cross1 libgcc-9-dev_9.3.0-19 libgcc-s1_10.2.1-3 libgcc-s1-armhf-cross_10.2.1-1cross1 libgcrypt20_1.8.7-2 libgdbm-compat4_1.18.1-5.1 libgdbm6_1.18.1-5.1 libgmp10_2:6.2.1+dfsg-1 libgnutls30_3.7.0-5 libgomp1_10.2.1-3 libgomp1-armhf-cross_10.2.1-1cross1 libgpg-error0_1.38-2 libgssapi-krb5-2_1.18.3-4 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libicu67_67.1-5 libidn2-0_2.3.0-4 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.23-1 libitm1_10.2.1-3 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sensible-utils_0.0.12+nmu1 sysvinit-utils_2.96-5 tar_1.32+dfsg-1 tzdata_2020f-1 ucf_3.0043 util-linux_2.36.1-4 xz-utils_5.2.5-1.0 zlib1g_1:1.2.11.dfsg-2

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

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Format: 3.0 (quilt)
Source: wham-align
Binary: wham-align
Architecture: any
Version: 0.1.5-6
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Steffen Moeller <moeller@debian.org>
Homepage: http://research.cs.wisc.edu/wham
Standards-Version: 4.5.1
Vcs-Browser: https://salsa.debian.org/med-team/wham-align
Vcs-Git: https://salsa.debian.org/med-team/wham-align.git
Testsuite: autopkgtest
Build-Depends: debhelper-compat (= 13), help2man
Package-List:
 wham-align deb science optional arch=any
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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/tmp/dpkg-verify-sig.QGTedvZY/trustedkeys.kbx': General error
gpgv: Signature made Thu Jan  7 20:15:15 2021 UTC
gpgv:                using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./wham-align_0.1.5-6.dsc
dpkg-source: info: extracting wham-align in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking wham-align_0.1.5.orig.tar.gz
dpkg-source: info: unpacking wham-align_0.1.5-6.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying makefile.patch
dpkg-source: info: applying non-x86.patch
dpkg-source: info: applying spelling.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=helmut
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1003
SCHROOT_GROUP=helmut
SCHROOT_SESSION_ID=unstable-amd64-sbuild-925e6b44-fc60-4482-bb16-fc93b63ff1b7
SCHROOT_UID=1003
SCHROOT_USER=helmut
SHELL=/bin/sh
USER=helmut

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package wham-align
dpkg-buildpackage: info: source version 0.1.5-6
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Étienne Mollier <etienne.mollier@mailoo.org>
dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture armhf
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_clean
	install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
	make -j1 clean
make[2]: Entering directory '/<<PKGBUILDDIR>>'
rm -f wham wham-build *.o
make[2]: Leaving directory '/<<PKGBUILDDIR>>'
rm -f debian/*.1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
	rm -f debian/debhelper-build-stamp
	rm -rf debian/.debhelper/
	rm -f -- debian/wham-align.substvars debian/files
	rm -fr -- debian/wham-align/ debian/tmp/
	find .  \( \( \
		\( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \
	        \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \
		 -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \
		 -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \
		 -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \
		\) -exec rm -f {} + \) -o \
		\( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \)
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   dh_auto_configure -a
	install -d /<<PKGBUILDDIR>>/debian/.debhelper/generated/_source/home
   dh_auto_build -a
	make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc
make[1]: Entering directory '/<<PKGBUILDDIR>>'
arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings hash.cpp
In file included from hitset.h:31,
                 from hash.h:29,
                 from hash.cpp:27:
pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’:
pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
  265 |     if (num > nError) {
      |         ~~~~^~~~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’:
pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable]
  602 |     int i, j, offset, min, tmp;
      |               ^~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’:
pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable]
  685 |     int a;
      |         ^
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’:
pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable]
  756 |     int a;
      |         ^
pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’:
pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  974 |     tmp.high = x.high ^ - x.high | (0LL - (x.low != 0));
      |                ~~~~~~~^~~~~~~~~~
In file included from hash.h:29,
                 from hash.cpp:27:
hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’:
hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
   86 |     int size;
      |         ^~~~
In file included from hash.cpp:27:
hash.h: In function ‘uint32 murmurHash(int64*, uint32)’:
hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable]
   86 |   uint32 sum = 0;
      |          ^~~
hash.cpp: In member function ‘int HashTable::preProcessEnd()’:
hash.cpp:236:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32’ {aka ‘const unsigned int’} [-Wsign-compare]
  236 |     if (h >= nHistogram)
      |         ~~^~~~~~~~~~~~~
hash.cpp:285:33: warning: comparison of integer expressions of different signedness: ‘uint32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare]
  285 |     if (useEmbedTables() && tmp > embedShreshold) {
      |                             ~~~~^~~~~~~~~~~~~~~~
hash.cpp: In member function ‘void HashTable::setScanThreshold(double)’:
hash.cpp:343:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  343 |   for (int i = 0; i < nHistogram - 1; i++) {
      |                   ~~^~~~~~~~~~~~~~~~
hash.cpp: In member function ‘void HashTable::insert(int64*, unsigned int)’:
hash.cpp:460:38: warning: operation on ‘*(((HashTable*)this)->HashTable::overflowPool + ((sizetype)(curOverflowEntry * 4)))’ may be undefined [-Wsequence-point]
  460 |       overflowPool[curOverflowEntry] =
hash.cpp:411:10: warning: unused variable ‘seqOffset’ [-Wunused-variable]
  411 |   uint32 seqOffset;
      |          ^~~~~~~~~
hash.cpp:413:10: warning: unused variable ‘counter’ [-Wunused-variable]
  413 |   uint32 counter = 0;
      |          ^~~~~~~
hash.cpp:414:11: warning: variable ‘seqVector’ set but not used [-Wunused-but-set-variable]
  414 |   int64 * seqVector;
      |           ^~~~~~~~~
hash.cpp:416:11: warning: unused variable ‘target’ [-Wunused-variable]
  416 |   int64 * target = &tspace[8];
      |           ^~~~~~
hash.cpp:417:8: warning: unused variable ‘isBloomFilter’ [-Wunused-variable]
  417 |   bool isBloomFilter;
      |        ^~~~~~~~~~~~~
hash.cpp:418:12: warning: unused variable ‘bloomFilter’ [-Wunused-variable]
  418 |   uint32 * bloomFilter;
      |            ^~~~~~~~~~~
hash.cpp:419:10: warning: unused variable ‘bloomFilterNum’ [-Wunused-variable]
  419 |   uint32 bloomFilterNum;
      |          ^~~~~~~~~~~~~~
hash.cpp: In member function ‘int HashTable::buildEmbedTable()’:
hash.cpp:469:33: warning: unused variable ‘rest’ [-Wunused-variable]
  469 |   int64 * query = &ttspace[8], *rest = &ttspace[24], *rest1 = &ttspace[40],
      |                                 ^~~~
hash.cpp:469:55: warning: unused variable ‘rest1’ [-Wunused-variable]
  469 |   int64 * query = &ttspace[8], *rest = &ttspace[24], *rest1 = &ttspace[40],
      |                                                       ^~~~~
hash.cpp:470:8: warning: unused variable ‘rest2’ [-Wunused-variable]
  470 |       *rest2 = &ttspace[56], *noheadkey = &ttspace[72];
      |        ^~~~~
hash.cpp:470:31: warning: unused variable ‘noheadkey’ [-Wunused-variable]
  470 |       *rest2 = &ttspace[56], *noheadkey = &ttspace[72];
      |                               ^~~~~~~~~
hash.cpp:472:34: warning: variable ‘startOffset’ set but not used [-Wunused-but-set-variable]
  472 |   uint32 seqOffset, entryOffset, startOffset;
      |                                  ^~~~~~~~~~~
hash.cpp: In member function ‘void HashTable::preinsertEmbedTableEntry(int64*, int, int)’:
hash.cpp:587:11: warning: unused variable ‘noheadkey’ [-Wunused-variable]
  587 |   int64 * noheadkey = &tspace[8], *rest = &tspace[24];
      |           ^~~~~~~~~
hash.cpp:590:8: warning: unused variable ‘subkey4’ [-Wunused-variable]
  590 |       *subkey4 = &tspace[88], *subkey5 = &tspace[104];
      |        ^~~~~~~
hash.cpp:590:32: warning: unused variable ‘subkey5’ [-Wunused-variable]
  590 |       *subkey4 = &tspace[88], *subkey5 = &tspace[104];
      |                                ^~~~~~~
hash.cpp: In member function ‘void HashTable::insertEmbedTableEntry(int64*, uint32, int, int)’:
hash.cpp:662:11: warning: unused variable ‘noheadkey’ [-Wunused-variable]
  662 |   int64 * noheadkey = &tspace[8], *rest = &tspace[24];
      |           ^~~~~~~~~
hash.cpp:665:8: warning: unused variable ‘subkey4’ [-Wunused-variable]
  665 |       *subkey4 = &tspace[88], *subkey5 = &tspace[104];
      |        ^~~~~~~
hash.cpp:665:32: warning: unused variable ‘subkey5’ [-Wunused-variable]
  665 |       *subkey4 = &tspace[88], *subkey5 = &tspace[104];
      |                                ^~~~~~~
hash.cpp: In member function ‘unsigned int HashTable::lookup(int64*, int64*, int, char*, strand, int, HitSet*, bool)’:
hash.cpp:746:7: warning: unused variable ‘num’ [-Wunused-variable]
  746 |   int num;
      |       ^~~
hash.cpp:750:11: warning: unused variable ‘diff’ [-Wunused-variable]
  750 |   int64 * diff = &tspace1[8], *target = &tspace2[8];
      |           ^~~~
hash.cpp:753:10: warning: unused variable ‘sid’ [-Wunused-variable]
  753 |   uint32 sid, soffset;
      |          ^~~
hash.cpp:753:15: warning: unused variable ‘soffset’ [-Wunused-variable]
  753 |   uint32 sid, soffset;
      |               ^~~~~~~
hash.cpp: In member function ‘unsigned int HashTable::lookupEmbedTable(int64*, uint32, int, char*, strand, int, HitSet*, bool)’:
hash.cpp:962:11: warning: unused variable ‘noheadkey’ [-Wunused-variable]
  962 |   int64 * noheadkey = &tspace[8], *rest = &tspace[24];
      |           ^~~~~~~~~
hash.cpp:965:8: warning: unused variable ‘subkey4’ [-Wunused-variable]
  965 |       *subkey4 = &tspace[88], *subkey5 = &tspace[104];
      |        ^~~~~~~
hash.cpp:965:32: warning: unused variable ‘subkey5’ [-Wunused-variable]
  965 |       *subkey4 = &tspace[88], *subkey5 = &tspace[104];
      |                                ^~~~~~~
hash.cpp:973:11: warning: unused variable ‘seqVector’ [-Wunused-variable]
  973 |   int64 * seqVector = sequence->getSequence();
      |           ^~~~~~~~~
hash.cpp: In member function ‘bool HashTable::lookup(int64*, uint32)’:
hash.cpp:1052:7: warning: unused variable ‘num’ [-Wunused-variable]
 1052 |   int num;
      |       ^~~
hash.cpp:1056:11: warning: unused variable ‘diff’ [-Wunused-variable]
 1056 |   int64 * diff = &tspace1[8], *target = &tspace2[8];
      |           ^~~~
hash.cpp:1056:32: warning: unused variable ‘target’ [-Wunused-variable]
 1056 |   int64 * diff = &tspace1[8], *target = &tspace2[8];
      |                                ^~~~~~
hash.cpp:1057:11: warning: variable ‘seqVector’ set but not used [-Wunused-but-set-variable]
 1057 |   int64 * seqVector;
      |           ^~~~~~~~~
hash.cpp:1059:10: warning: unused variable ‘sid’ [-Wunused-variable]
 1059 |   uint32 sid, soffset;
      |          ^~~
hash.cpp:1059:15: warning: unused variable ‘soffset’ [-Wunused-variable]
 1059 |   uint32 sid, soffset;
      |               ^~~~~~~
hash.cpp: In member function ‘uint32 HashTable::printOverflowList(uint32, uint32, int64*)’:
hash.cpp:1184:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
 1184 |     for (int i = 0; i < keyOffset / BITS_PER_BASE; i++)
hash.cpp:1188:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
 1188 |     for (int i = 0; i < (lenSeq - keyOffset - lenKey) / BITS_PER_BASE; i++)
hash.cpp:1247:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
 1247 |         for (int j = 0; j < strlen(set[i].str); j++)
      |                         ~~^~~~~~~~~~~~~~~~~~~~
hash.cpp:1254:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
 1254 |       for (int j = 0; j < strlen(set[i].str); j++)
      |                       ~~^~~~~~~~~~~~~~~~~~~~
hash.cpp:1137:11: warning: unused variable ‘diff’ [-Wunused-variable]
 1137 |   int64 * diff = &tspace1[8], *target = &tspace2[8];
      |           ^~~~
hash.cpp: In member function ‘int HashTable::sortList()’:
hash.cpp:1430:14: warning: variable ‘pool’ set but not used [-Wunused-but-set-variable]
 1430 |     uint32 * pool;
      |              ^~~~
hash.cpp:1321:34: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable]
 1321 |   uint32 entryOffset, seqOffset, offset;
      |                                  ^~~~~~
hash.cpp: In member function ‘void HashTable::checkRepeat(uint32)’:
hash.cpp:1673:34: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable]
 1673 |   uint32 entryOffset, seqOffset, offset;
      |                                  ^~~~~~
hash.cpp:1690:5: warning: label ‘restart’ defined but not used [-Wunused-label]
 1690 |     restart: if (buckets[bucketId] == HASH_EMPTY
      |     ^~~~~~~
hash.cpp: In member function ‘unsigned int HashTable::lookupEmbedTable(int64*, uint32, int, char*, strand, int, HitSet*, bool)’:
hash.cpp:1049:1: warning: control reaches end of non-void function [-Wreturn-type]
 1049 | }
      | ^
In file included from hash.cpp:31:
edit_distance.h: At global scope:
edit_distance.h:25:18: warning: ‘obj_score_mat’ defined but not used [-Wunused-variable]
   25 | static score_mat obj_score_mat = { 1, 1, 1, 1 };
      |                  ^~~~~~~~~~~~~
In file included from pair.h:26,
                 from hitset.h:31,
                 from hash.h:29,
                 from hash.cpp:27:
rdtsc.h: In function ‘long long unsigned int curtick()’:
rdtsc.h:32:10: warning: ‘tick’ is used uninitialized in this function [-Wuninitialized]
   32 |   return tick;
      |          ^~~~
arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings embedhash.cpp
In file included from hitset.h:31,
                 from hash.h:29,
                 from embedhash.cpp:27:
pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’:
pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
  265 |     if (num > nError) {
      |         ~~~~^~~~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’:
pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable]
  602 |     int i, j, offset, min, tmp;
      |               ^~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’:
pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable]
  685 |     int a;
      |         ^
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’:
pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable]
  756 |     int a;
      |         ^
pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’:
pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  974 |     tmp.high = x.high ^ - x.high | (0LL - (x.low != 0));
      |                ~~~~~~~^~~~~~~~~~
In file included from hash.h:29,
                 from embedhash.cpp:27:
hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’:
hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
   86 |     int size;
      |         ^~~~
In file included from embedhash.cpp:27:
hash.h: In function ‘uint32 murmurHash(int64*, uint32)’:
hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable]
   86 |   uint32 sum = 0;
      |          ^~~
embedhash.cpp: In member function ‘int EmbedHashTable::preProcessEnd()’:
embedhash.cpp:137:16: warning: unused variable ‘ln2’ [-Wunused-variable]
  137 |   const double ln2 = log(2);
      |                ^~~
embedhash.cpp: In member function ‘void EmbedHashTable::setScanThreshold(double)’:
embedhash.cpp:253:9: warning: unused variable ‘sum’ [-Wunused-variable]
  253 |   int64 sum = 0;
      |         ^~~
embedhash.cpp:255:9: warning: unused variable ‘top’ [-Wunused-variable]
  255 |   int64 top = total - total * r;
      |         ^~~
embedhash.cpp: In member function ‘void EmbedHashTable::insert(int64*, unsigned int)’:
embedhash.cpp:369:38: warning: operation on ‘*(((EmbedHashTable*)this)->EmbedHashTable::overflowPool + ((sizetype)(curOverflowEntry * 4)))’ may be undefined [-Wsequence-point]
  369 |       overflowPool[curOverflowEntry] =
embedhash.cpp:328:10: warning: unused variable ‘seqOffset’ [-Wunused-variable]
  328 |   uint32 seqOffset;
      |          ^~~~~~~~~
embedhash.cpp:330:10: warning: unused variable ‘counter’ [-Wunused-variable]
  330 |   uint32 counter = 0;
      |          ^~~~~~~
embedhash.cpp:331:11: warning: variable ‘seqVector’ set but not used [-Wunused-but-set-variable]
  331 |   int64 * seqVector;
      |           ^~~~~~~~~
embedhash.cpp:333:11: warning: unused variable ‘target’ [-Wunused-variable]
  333 |   int64 * target = &tspace[8];
      |           ^~~~~~
embedhash.cpp:334:8: warning: unused variable ‘isBloomFilter’ [-Wunused-variable]
  334 |   bool isBloomFilter;
      |        ^~~~~~~~~~~~~
embedhash.cpp:335:12: warning: unused variable ‘bloomFilter’ [-Wunused-variable]
  335 |   uint32 * bloomFilter;
      |            ^~~~~~~~~~~
embedhash.cpp:336:10: warning: unused variable ‘bloomFilterNum’ [-Wunused-variable]
  336 |   uint32 bloomFilterNum;
      |          ^~~~~~~~~~~~~~
embedhash.cpp: In member function ‘unsigned int EmbedHashTable::lookup(int64*, int64*, int, char*, strand, int, HitSet*, bool)’:
embedhash.cpp:385:7: warning: unused variable ‘num’ [-Wunused-variable]
  385 |   int num;
      |       ^~~
embedhash.cpp:387:34: warning: variable ‘startOffset’ set but not used [-Wunused-but-set-variable]
  387 |   uint32 seqOffset, entryOffset, startOffset;
      |                                  ^~~~~~~~~~~
embedhash.cpp:389:11: warning: unused variable ‘diff’ [-Wunused-variable]
  389 |   int64 * diff = &tspace1[8], *target = &tspace2[8];
      |           ^~~~
embedhash.cpp:392:10: warning: unused variable ‘sid’ [-Wunused-variable]
  392 |   uint32 sid, soffset;
      |          ^~~
embedhash.cpp:392:15: warning: unused variable ‘soffset’ [-Wunused-variable]
  392 |   uint32 sid, soffset;
      |               ^~~~~~~
In file included from embedhash.cpp:32:
edit_distance.h: At global scope:
edit_distance.h:25:18: warning: ‘obj_score_mat’ defined but not used [-Wunused-variable]
   25 | static score_mat obj_score_mat = { 1, 1, 1, 1 };
      |                  ^~~~~~~~~~~~~
In file included from pair.h:26,
                 from hitset.h:31,
                 from hash.h:29,
                 from embedhash.cpp:27:
rdtsc.h: In function ‘long long unsigned int curtick()’:
rdtsc.h:32:10: warning: ‘tick’ is used uninitialized in this function [-Wuninitialized]
   32 |   return tick;
      |          ^~~~
arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings main.cpp
In file included from hitset.h:31,
                 from hash.h:29,
                 from aligner.h:25,
                 from main.cpp:34:
pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’:
pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
  265 |     if (num > nError) {
      |         ~~~~^~~~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’:
pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable]
  602 |     int i, j, offset, min, tmp;
      |               ^~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’:
pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable]
  685 |     int a;
      |         ^
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’:
pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable]
  756 |     int a;
      |         ^
pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’:
pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  974 |     tmp.high = x.high ^ - x.high | (0LL - (x.low != 0));
      |                ~~~~~~~^~~~~~~~~~
In file included from hash.h:29,
                 from aligner.h:25,
                 from main.cpp:34:
hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’:
hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
   86 |     int size;
      |         ^~~~
In file included from aligner.h:25,
                 from main.cpp:34:
hash.h: In function ‘uint32 murmurHash(int64*, uint32)’:
hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable]
   86 |   uint32 sum = 0;
      |          ^~~
main.cpp: In function ‘int getArguVal(char*)’:
main.cpp:159:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  159 |   else if (*c = 'g' || *c == 'G')
      |            ~~~^~~~~~~~~~~~~~~~~~
main.cpp: In function ‘int align(char*, AlignInfo*, char*, int)’:
main.cpp:350:7: warning: unused variable ‘i’ [-Wunused-variable]
  350 |   int i, j, ret;
      |       ^
main.cpp:350:10: warning: unused variable ‘j’ [-Wunused-variable]
  350 |   int i, j, ret;
      |          ^
main.cpp: In function ‘int main(int, char**)’:
main.cpp:523:7: warning: unused variable ‘numKeys’ [-Wunused-variable]
  523 |   int numKeys;
      |       ^~~~~~~
main.cpp:526:7: warning: unused variable ‘nSeq’ [-Wunused-variable]
  526 |   int nSeq = 1;
      |       ^~~~
main.cpp:532:21: warning: unused variable ‘sequence’ [-Wunused-variable]
  532 |   CompactSequence * sequence;
      |                     ^~~~~~~~
main.cpp:534:15: warning: unused variable ‘threadpool’ [-Wunused-variable]
  534 |   pthread_t * threadpool;
      |               ^~~~~~~~~~
main.cpp:536:9: warning: unused variable ‘threadid’ [-Wunused-variable]
  536 |   int * threadid;
      |         ^~~~~~~~
In file included from main.cpp:38:
edit_distance.h: At global scope:
edit_distance.h:25:18: warning: ‘obj_score_mat’ defined but not used [-Wunused-variable]
   25 | static score_mat obj_score_mat = { 1, 1, 1, 1 };
      |                  ^~~~~~~~~~~~~
main.cpp: In function ‘void mergeFiles(std::string)’:
main.cpp:269:21: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
  269 |     sprintf(buf, ".t%d ", i);
      |                     ^~
main.cpp:269:18: note: directive argument in the range [0, 2147483647]
  269 |     sprintf(buf, ".t%d ", i);
      |                  ^~~~~~~
main.cpp:269:12: note: ‘sprintf’ output between 5 and 14 bytes into a destination of size 10
  269 |     sprintf(buf, ".t%d ", i);
      |     ~~~~~~~^~~~~~~~~~~~~~~~~
main.cpp:276:21: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
  276 |     sprintf(buf, ".t%d", i);
      |                     ^~
main.cpp:276:18: note: directive argument in the range [0, 2147483647]
  276 |     sprintf(buf, ".t%d", i);
      |                  ^~~~~~
main.cpp:276:12: note: ‘sprintf’ output between 4 and 13 bytes into a destination of size 10
  276 |     sprintf(buf, ".t%d", i);
      |     ~~~~~~~^~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings sequence.cpp
In file included from hitset.h:31,
                 from hash.h:29,
                 from aligner.h:25,
                 from sequence.cpp:30:
pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’:
pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
  265 |     if (num > nError) {
      |         ~~~~^~~~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’:
pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable]
  602 |     int i, j, offset, min, tmp;
      |               ^~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’:
pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable]
  685 |     int a;
      |         ^
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’:
pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable]
  756 |     int a;
      |         ^
pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’:
pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  974 |     tmp.high = x.high ^ - x.high | (0LL - (x.low != 0));
      |                ~~~~~~~^~~~~~~~~~
In file included from hash.h:29,
                 from aligner.h:25,
                 from sequence.cpp:30:
hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’:
hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
   86 |     int size;
      |         ^~~~
In file included from aligner.h:25,
                 from sequence.cpp:30:
hash.h: In function ‘uint32 murmurHash(int64*, uint32)’:
hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable]
   86 |   uint32 sum = 0;
      |          ^~~
sequence.cpp: In member function ‘void CompactSequence::extractFileName(char*, char*)’:
sequence.cpp:97:10: warning: unused variable ‘str’ [-Wunused-variable]
   97 |   char * str;
      |          ^~~
sequence.cpp: In member function ‘int CompactSequence::build(char**, int, int, int)’:
sequence.cpp:238:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  238 |   for (i = 0; i < numFile; i++) {
      |               ~~^~~~~~~~~
sequence.cpp:309:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  309 | (  i = 0; i < nSeq; i++)
      |           ~~^~~~~~
sequence.cpp:324:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  324 |   for (i = 0; i < numFile; i++) {
      |               ~~^~~~~~~~~
sequence.cpp:344:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  344 |         for (j = 0; j < numError + 1; j++) {
      |                     ~~^~~~~~~~~~~~~~
sequence.cpp:410:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  410 |           if (lenSegmentN > numError + 1) {
      |               ~~~~~~~~~~~~^~~~~~~~~~~~~~
sequence.cpp:429:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  429 |           if (lenSegmentN > numError + 1) {
      |               ~~~~~~~~~~~~^~~~~~~~~~~~~~
sequence.cpp:223:16: warning: unused variable ‘step’ [-Wunused-variable]
  223 |   unsigned int step, nextstep;
      |                ^~~~
sequence.cpp:223:22: warning: unused variable ‘nextstep’ [-Wunused-variable]
  223 |   unsigned int step, nextstep;
      |                      ^~~~~~~~
sequence.cpp: In member function ‘int CompactSequence::filter(Aligner*, char**, int, char*)’:
sequence.cpp:534:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  534 |   for (i = 0; i < numFile; i++) {
      |               ~~^~~~~~~~~
sequence.cpp:599:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  599 |           if (lenSegmentN > nError + 1)
      |               ~~~~~~~~~~~~^~~~~~~~~~~~
sequence.cpp:520:16: warning: unused variable ‘step’ [-Wunused-variable]
  520 |   unsigned int step, nextstep;
      |                ^~~~
sequence.cpp:520:22: warning: unused variable ‘nextstep’ [-Wunused-variable]
  520 |   unsigned int step, nextstep;
      |                      ^~~~~~~~
sequence.cpp:521:9: warning: unused variable ‘numFileChar’ [-Wunused-variable]
  521 |   int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment;
      |         ^~~~~~~~~~~
sequence.cpp:521:22: warning: unused variable ‘numFileNSeg’ [-Wunused-variable]
  521 |   int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment;
      |                      ^~~~~~~~~~~
sequence.cpp:521:35: warning: unused variable ‘numFileSeq’ [-Wunused-variable]
  521 |   int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment;
      |                                   ^~~~~~~~~~
sequence.cpp:521:47: warning: unused variable ‘nChar’ [-Wunused-variable]
  521 |   int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment;
      |                                               ^~~~~
sequence.cpp:521:54: warning: unused variable ‘nNSegment’ [-Wunused-variable]
  521 |   int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment;
      |                                                      ^~~~~~~~~
sequence.cpp: In member function ‘int CompactSequence::save(char*)’:
sequence.cpp:738:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
  738 |   if (ret != size) {
      |       ~~~~^~~~~~~
sequence.cpp: In member function ‘int CompactSequence::load(char*)’:
sequence.cpp:804:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
  804 |   if (ret != size) {
      |       ~~~~^~~~~~~
sequence.cpp: In member function ‘int CompactSequence::build(char**, int, int, int)’:
sequence.cpp:506:15: warning: ‘offsetInOrgSeq’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  506 |   itree->flush(offsetInCmptSeq, 0, curSeq, offsetInOrgSeq);
      |   ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequence.cpp: In static member function ‘static void CompactSequence::compose(char*, int, int64*)’:
sequence.cpp:672:19: warning: ‘code’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  672 |           | (code >> (forward_offset + BITS_PER_BASE - BITS_PER_LONGWORD));
      |             ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings aligner.cpp
In file included from hitset.h:31,
                 from hash.h:29,
                 from aligner.h:25,
                 from aligner.cpp:25:
pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’:
pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
  265 |     if (num > nError) {
      |         ~~~~^~~~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’:
pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable]
  602 |     int i, j, offset, min, tmp;
      |               ^~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’:
pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable]
  685 |     int a;
      |         ^
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’:
pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable]
  756 |     int a;
      |         ^
pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’:
pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  974 |     tmp.high = x.high ^ - x.high | (0LL - (x.low != 0));
      |                ~~~~~~~^~~~~~~~~~
In file included from hash.h:29,
                 from aligner.h:25,
                 from aligner.cpp:25:
hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’:
hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
   86 |     int size;
      |         ^~~~
In file included from aligner.h:25,
                 from aligner.cpp:25:
hash.h: In function ‘uint32 murmurHash(int64*, uint32)’:
hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable]
   86 |   uint32 sum = 0;
      |          ^~~
aligner.cpp: In member function ‘int Aligner::initLookupArray()’:
aligner.cpp:365:37: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
  365 |       if ((indexBits[i] >> j) & 0x1 == 1) {
      |                                 ~~~~^~~~
aligner.cpp:371:37: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
  371 |       if ((indexBits[i] >> j) & 0x1 == 1) {
      |                                 ~~~~^~~~
aligner.cpp: In member function ‘int Aligner::preProcessHashTables()’:
aligner.cpp:534:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  534 |   for (i = 0; i < nHashTable; i++) {
      |               ~~^~~~~~~~~~~~
aligner.cpp:712:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  712 |   for (i = 0; i < nHashTable; i++) {
      |               ~~^~~~~~~~~~~~
aligner.cpp: In member function ‘int Aligner::build(char*)’:
aligner.cpp:724:16: warning: unused variable ‘i’ [-Wunused-variable]
  724 |   unsigned int i, j;
      |                ^
aligner.cpp:724:19: warning: unused variable ‘j’ [-Wunused-variable]
  724 |   unsigned int i, j;
      |                   ^
aligner.cpp: In member function ‘int Aligner::buildHashTables(char*)’:
aligner.cpp:807:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  807 |   for (i = 0; i < nHashTable; i++) {
      |               ~~^~~~~~~~~~~~
aligner.cpp:844:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  844 |       for (i1 = 0; i1 < lenPartition * (nPartition - 1); i1 += lenPartition) {
      |                    ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:864:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  864 |       for (i1 = 0; i1 < lenPartition * (nPartition - 2); i1 += lenPartition) {
      |                    ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:871:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  871 |         for (i2 = i1; i2 < lenPartition * (nPartition - 2);
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:894:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  894 |       for (i1 = 0; i1 < lenPartition * (nPartition - 3); i1 += lenPartition) {
      |                    ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:901:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  901 |         for (i2 = i1; i2 < lenPartition * (nPartition - 3);
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:909:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  909 |           for (i3 = i2; i3 < lenPartition * (nPartition - 3);
      |                         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:928:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  928 |       for (i1 = 0; i1 < lenPartition * (nPartition - 4); i1 += lenPartition) {
      |                    ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:930:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  930 |         for (i2 = i1; i2 < lenPartition * (nPartition - 4);
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:933:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  933 |           for (i3 = i2; i3 < lenPartition * (nPartition - 4);
      |                         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:936:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  936 |             for (i4 = i3; i4 < lenPartition * (nPartition - 4); i4 +=
      |                           ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:951:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  951 |       for (i1 = 0; i1 < lenPartition * (nPartition - 5); i1 += lenPartition) {
      |                    ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:953:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  953 |         for (i2 = i1; i2 < lenPartition * (nPartition - 5);
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:956:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  956 |           for (i3 = i2; i3 < lenPartition * (nPartition - 5);
      |                         ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:959:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  959 |             for (i4 = i3; i4 < lenPartition * (nPartition - 5); i4 +=
      |                           ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:962:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  962 |               for (i5 = i4; i5 < lenPartition * (nPartition - 5); i5 +=
      |                             ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aligner.cpp:983:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
  983 |     for (i = 0; i < nHashTable; i++) {
      |                 ~~^~~~~~~~~~~~
aligner.cpp:1006:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1006 |     for (i = 0; i < nHashTable; i++) {
      |                 ~~^~~~~~~~~~~~
aligner.cpp: In member function ‘unsigned int Aligner::alignFirst(int64*, char*, strand, int, HitSet*, bool)’:
aligner.cpp:1035:10: warning: unused variable ‘offset’ [-Wunused-variable]
 1035 |   uint32 offset;
      |          ^~~~~~
aligner.cpp:1039:7: warning: unused variable ‘nHit’ [-Wunused-variable]
 1039 |   int nHit = 0;
      |       ^~~~
aligner.cpp: In member function ‘unsigned int Aligner::align(int64*, char*, strand, int, HitSet*, bool, bool)’:
aligner.cpp:1119:10: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable]
 1119 |   uint32 offset;
      |          ^~~~~~
aligner.cpp:1123:7: warning: variable ‘nHit’ set but not used [-Wunused-but-set-variable]
 1123 |   int nHit = 0;
      |       ^~~~
aligner.cpp: In member function ‘int Aligner::check(int)’:
aligner.cpp:1436:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1436 |   for (i = 0; i < num; i++) {
      |               ~~^~~~~
aligner.cpp:1452:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1452 |     for (j = 0; j < nError; j++) {
      |                 ~~^~~~~~~~
aligner.cpp:1426:7: warning: unused variable ‘ret’ [-Wunused-variable]
 1426 |   int ret;
      |       ^~~
aligner.cpp: In member function ‘AlignRes Aligner::alignSingleEnd(AlignInfo*, char*)’:
aligner.cpp:1541:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1541 |   for (i = 0; i < nHashTable; i++) {
      |               ~~^~~~~~~~~~~~
aligner.cpp:1547:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1547 |   for (i = 0; i < res.nRead; i++) {
      |               ~~^~~~~~~~~~~
aligner.cpp:1629:3: warning: deleting object of abstract class type ‘Writer’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor]
 1629 |   delete writer;
      |   ^~~~~~~~~~~~~
aligner.cpp:1502:10: warning: unused variable ‘file’ [-Wunused-variable]
 1502 |   FILE * file = NULL, *alfile = NULL, *unfile = NULL;
      |          ^~~~
aligner.cpp:1502:24: warning: unused variable ‘alfile’ [-Wunused-variable]
 1502 |   FILE * file = NULL, *alfile = NULL, *unfile = NULL;
      |                        ^~~~~~
aligner.cpp:1502:40: warning: unused variable ‘unfile’ [-Wunused-variable]
 1502 |   FILE * file = NULL, *alfile = NULL, *unfile = NULL;
      |                                        ^~~~~~
aligner.cpp:1505:7: warning: unused variable ‘strand’ [-Wunused-variable]
 1505 |   int strand;
      |       ^~~~~~
aligner.cpp:1508:9: warning: unused variable ‘ratio’ [-Wunused-variable]
 1508 |   float ratio;
      |         ^~~~~
aligner.cpp:1514:31: warning: unused variable ‘strata’ [-Wunused-variable]
 1514 |   bool sorted = info->sorted, strata = info->strata;
      |                               ^~~~~~
aligner.cpp: In member function ‘AlignRes Aligner::alignPairEnd(AlignInfo*, char*)’:
aligner.cpp:1685:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1685 |   for (i = 0; i < res.nRead; i++) {
      |               ~~^~~~~~~~~~~
aligner.cpp:1754:3: warning: deleting object of abstract class type ‘Writer’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor]
 1754 |   delete writer;
      |   ^~~~~~~~~~~~~
aligner.cpp:1637:8: warning: unused variable ‘success’ [-Wunused-variable]
 1637 |   bool success;
      |        ^~~~~~~
aligner.cpp:1638:16: warning: unused variable ‘nSuccessRead’ [-Wunused-variable]
 1638 |   unsigned int nSuccessRead = 0;
      |                ^~~~~~~~~~~~
aligner.cpp:1639:10: warning: unused variable ‘file’ [-Wunused-variable]
 1639 |   FILE * file = NULL;
      |          ^~~~
aligner.cpp:1646:8: warning: unused variable ‘mateFilename’ [-Wunused-variable]
 1646 |   char mateFilename[256];
      |        ^~~~~~~~~~~~
aligner.cpp:1652:31: warning: unused variable ‘strata’ [-Wunused-variable]
 1652 |   bool sorted = info->sorted, strata = info->strata;
      |                               ^~~~~~
aligner.cpp: In member function ‘AlignRes Aligner::mergeSingleEnd(AlignInfo*, int, char*)’:
aligner.cpp:1851:3: warning: deleting object of abstract class type ‘Writer’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor]
 1851 |   delete writer;
      |   ^~~~~~~~~~~~~
aligner.cpp:1775:10: warning: unused variable ‘ret’ [-Wunused-variable]
 1775 |   int i, ret;
      |          ^~~
aligner.cpp: In member function ‘AlignRes Aligner::mergePairEnd(AlignInfo*, int, char*)’:
aligner.cpp:1989:3: warning: deleting object of abstract class type ‘Writer’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor]
 1989 |   delete writer;
      |   ^~~~~~~~~~~~~
aligner.cpp:1874:10: warning: unused variable ‘ret’ [-Wunused-variable]
 1874 |   int i, ret;
      |          ^~~
In file included from aligner.h:25,
                 from aligner.cpp:25:
hash.h: In member function ‘int Aligner::initLookupArray()’:
hash.h:353:18: warning: ‘keySpan’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  353 |     widthKeySpan = keySpan;
      |     ~~~~~~~~~~~~~^~~~~~~~~
aligner.cpp:360:7: note: ‘keySpan’ was declared here
  360 |   int keySpan;
      |       ^~~~~~~
aligner.cpp: In member function ‘unsigned int Aligner::alignFirst(int64*, char*, strand, int, HitSet*, bool)’:
aligner.cpp:1097:3: warning: ‘ret’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1097 |   if (ret == MSG_HITSETFULL)
      |   ^~
arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings interval.cpp
interval.cpp: In constructor ‘IntervalTree::IntervalTree(uint32, uint32)’:
interval.cpp:67:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
   67 |   for (int i = 0; i < numLevel - 1; i++) {
      |                   ~~^~~~~~~~~~~~~~
interval.cpp: In member function ‘int IntervalTree::save(char*)’:
interval.cpp:304:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
  304 |   if (ret != numLEntry) {
      |       ~~~~^~~~~~~~~~~~
interval.cpp:310:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
  310 |   if (ret != numIEntry) {
      |       ~~~~^~~~~~~~~~~~
interval.cpp: In member function ‘int IntervalTree::load(char*)’:
interval.cpp:359:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
  359 |   if (ret != numLEntry) {
      |       ~~~~^~~~~~~~~~~~
interval.cpp:370:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare]
  370 |   if (ret != numIEntry) {
      |       ~~~~^~~~~~~~~~~~
arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings edit_distance.cpp
edit_distance.cpp: In function ‘scoreinfo edit_distance(char*, char*, int, int, char*, char*, int)’:
edit_distance.cpp:61:7: warning: unused variable ‘i’ [-Wunused-variable]
   61 |   int i;
      |       ^
edit_distance.cpp: In function ‘scoreinfo edit_distance_align(int**, char**, char*, char*, int, int, char*, char*, int)’:
edit_distance.cpp:181:10: warning: unused variable ‘tmp_trace’ [-Wunused-variable]
  181 |     char tmp_trace = traceback[i][j];
      |          ^~~~~~~~~
edit_distance.cpp:132:14: warning: unused variable ‘x’ [-Wunused-variable]
  132 |   int k = 0, x = 0, y = 0;
      |              ^
edit_distance.cpp:132:21: warning: unused variable ‘y’ [-Wunused-variable]
  132 |   int k = 0, x = 0, y = 0;
      |                     ^
edit_distance.cpp:178:7: warning: unused variable ‘kk’ [-Wunused-variable]
  178 |   int kk = 0;
      |       ^~
arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings error.cpp
error.cpp: In function ‘void elog(int, char*, ...)’:
error.cpp:31:9: warning: unused variable ‘filename’ [-Wunused-variable]
   31 |   char *filename = __FILE__;
      |         ^~~~~~~~
error.cpp:32:7: warning: unused variable ‘lineno’ [-Wunused-variable]
   32 |   int lineno = __LINE__;
      |       ^~~~~~
arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings short.cpp
short.cpp: In member function ‘int ShortRead::preProcess(int)’:
short.cpp:212:16: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  212 |     while (len = readLine(file, str, 256)) {
      |            ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
short.cpp: In member function ‘ShortRead** ShortRead::split(int)’:
short.cpp:483:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  483 |     if (szPartition <= nRead - curRead)
      |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~
short.cpp: In member function ‘int ShortRead::load(int)’:
short.cpp:436:34: warning: ‘code’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  436 |                   | (reverse[code] << backward_offset);
      |                      ~~~~~~~~~~~~^
short.cpp: In member function ‘ShortRead** ShortRead::split(int)’:
short.cpp:503:45: warning: ‘.t’ directive writing 2 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
  503 |       sprintf(partitions[i]->alFileName, "%s.t%d", alFileName, i);
      |                                             ^~
short.cpp:503:42: note: directive argument in the range [0, 536870910]
  503 |       sprintf(partitions[i]->alFileName, "%s.t%d", alFileName, i);
      |                                          ^~~~~~~~
short.cpp:503:14: note: ‘sprintf’ output between 4 and 267 bytes into a destination of size 256
  503 |       sprintf(partitions[i]->alFileName, "%s.t%d", alFileName, i);
      |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
short.cpp:510:45: warning: ‘.t’ directive writing 2 bytes into a region of size between 1 and 256 [-Wformat-overflow=]
  510 |       sprintf(partitions[i]->unFileName, "%s.t%d", unFileName, i);
      |                                             ^~
short.cpp:510:42: note: directive argument in the range [0, 536870910]
  510 |       sprintf(partitions[i]->unFileName, "%s.t%d", unFileName, i);
      |                                          ^~~~~~~~
short.cpp:510:14: note: ‘sprintf’ output between 4 and 267 bytes into a destination of size 256
  510 |       sprintf(partitions[i]->unFileName, "%s.t%d", unFileName, i);
      |       ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings hitset.cpp
In file included from hitset.h:31,
                 from hitset.cpp:1:
pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’:
pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
  265 |     if (num > nError) {
      |         ~~~~^~~~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’:
pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable]
  602 |     int i, j, offset, min, tmp;
      |               ^~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’:
pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable]
  685 |     int a;
      |         ^
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’:
pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable]
  756 |     int a;
      |         ^
pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’:
pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  974 |     tmp.high = x.high ^ - x.high | (0LL - (x.low != 0));
      |                ~~~~~~~^~~~~~~~~~
In file included from hitset.cpp:1:
hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’:
hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
   86 |     int size;
      |         ^~~~
hitset.cpp: In member function ‘int HitPairSet::build(HitSet*, HitSet*, uint32, uint32, bool (*)[2], bool)’:
hitset.cpp:90:8: warning: unused variable ‘pairMatch’ [-Wunused-variable]
   90 |   bool pairMatch = false;
      |        ^~~~~~~~~
arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings perfcounters.cpp
arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings model.cpp
model.cpp: In static member function ‘static int AlignerModel::estimateNumPartition(unsigned int, int, int, bool)’:
model.cpp:76:16: warning: variable ‘nIndex’ set but not used [-Wunused-but-set-variable]
   76 |   unsigned int nIndex, nLookup, nBucket;
      |                ^~~~~~
model.cpp: In static member function ‘static unsigned int AlignerModel::getFreeMemory()’:
model.cpp:166:28: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=]
  166 |   fscanf(file, "MemTotal: %d kB\n", &memTotal);
      |                           ~^        ~~~~~~~~~
      |                            |        |
      |                            int*     unsigned int*
      |                           %d
model.cpp:167:27: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=]
  167 |   fscanf(file, "MemFree: %d kB\n", &memFree);
      |                          ~^        ~~~~~~~~
      |                           |        |
      |                           int*     unsigned int*
      |                          %d
model.cpp:168:27: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=]
  168 |   fscanf(file, "Buffers: %d kB\n", &memBuffer);
      |                          ~^        ~~~~~~~~~~
      |                           |        |
      |                           int*     unsigned int*
      |                          %d
model.cpp:169:26: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=]
  169 |   fscanf(file, "Cached: %d kB\n", &memCache);
      |                         ~^        ~~~~~~~~~
      |                          |        |
      |                          int*     unsigned int*
      |                         %d
model.cpp: In static member function ‘static unsigned int AlignerModel::estimateHashtableSpace(unsigned int, int, int, int)’:
model.cpp:198:26: warning: variable ‘p2’ set but not used [-Wunused-but-set-variable]
  198 |   double nSpace, p0, p1, p2;
      |                          ^~
arm-linux-gnueabihf-gcc -c -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings writer.cpp
In file included from hitset.h:31,
                 from writer.h:26,
                 from writer.cpp:21:
pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’:
pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare]
  265 |     if (num > nError) {
      |         ~~~~^~~~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’:
pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable]
  602 |     int i, j, offset, min, tmp;
      |               ^~~~~~
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’:
pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable]
  684 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable]
  685 |     int a;
      |         ^
pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’:
pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |               ^~~
pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable]
  755 |     int i, p, num, base, Cscore;
      |                    ^~~~
pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable]
  756 |     int a;
      |         ^
pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’:
pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  974 |     tmp.high = x.high ^ - x.high | (0LL - (x.low != 0));
      |                ~~~~~~~^~~~~~~~~~
In file included from writer.h:26,
                 from writer.cpp:21:
hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’:
hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
   86 |     int size;
      |         ^~~~
writer.cpp: In member function ‘void SimpleWriter::writeField(int64*, int64*, strand)’:
writer.cpp:154:27: warning: suggest parentheses around ‘-’ in operand of ‘&’ [-Wparentheses]
  154 |     j = BITS_PER_LONGWORD - (length * BITS_PER_BASE) & BITS_LONGWORD_MASK;
writer.cpp:148:10: warning: unused variable ‘sid’ [-Wunused-variable]
  148 |   uint32 sid = 0, soffset = 0;
      |          ^~~
writer.cpp:148:19: warning: unused variable ‘soffset’ [-Wunused-variable]
  148 |   uint32 sid = 0, soffset = 0;
      |                   ^~~~~~~
writer.cpp: In member function ‘void SamWriter::writeValidAlignment(int, HitSet*)’:
writer.cpp:271:7: warning: unused variable ‘i’ [-Wunused-variable]
  271 |   int i, j, k, h, lastDiff;
      |       ^
writer.cpp:271:10: warning: unused variable ‘j’ [-Wunused-variable]
  271 |   int i, j, k, h, lastDiff;
      |          ^
writer.cpp:271:13: warning: unused variable ‘k’ [-Wunused-variable]
  271 |   int i, j, k, h, lastDiff;
      |             ^
writer.cpp:271:19: warning: unused variable ‘lastDiff’ [-Wunused-variable]
  271 |   int i, j, k, h, lastDiff;
      |                   ^~~~~~~~
writer.cpp:272:9: warning: unused variable ‘code1’ [-Wunused-variable]
  272 |   int64 code1, code2;
      |         ^~~~~
writer.cpp:272:16: warning: unused variable ‘code2’ [-Wunused-variable]
  272 |   int64 code1, code2;
      |                ^~~~~
writer.cpp:278:10: warning: unused variable ‘p’ [-Wunused-variable]
  278 |   double p, sump;
      |          ^
writer.cpp:278:13: warning: unused variable ‘sump’ [-Wunused-variable]
  278 |   double p, sump;
      |             ^~~~
writer.cpp:279:30: warning: unused variable ‘tag’ [-Wunused-variable]
  279 |   char qseq[128], rseq[128], tag[128];
      |                              ^~~
writer.cpp:281:8: warning: unused variable ‘shortread’ [-Wunused-variable]
  281 |   char shortread[256];
      |        ^~~~~~~~~
writer.cpp: In member function ‘void SamWriter::getCIGAR(char*, char*, char*, ErrorVector)’:
writer.cpp:382:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
  382 |   for (i = 0, j = 0; i < strlen(query); i++, j++) {
      |                      ~~^~~~~~~~~~~~~~~
writer.cpp: In member function ‘void SamWriter::getMDfield(char*, char*, char*, ErrorVector)’:
writer.cpp:431:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare]
  431 |   for (i = 0, j = 0; i < strlen(query); i++, j++) {
      |                      ~~^~~~~~~~~~~~~~~
writer.cpp: In member function ‘void SamPairWriter::writeValidAlignment(int, HitSet*)’:
writer.cpp:619:47: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses]
  619 |     if (!mate1Unmatch && !mate2Unmatch & sid1 == sid2) {
      |                                          ~~~~~^~~~~~~
arm-linux-gnueabihf-gcc -o wham sequence.o hash.o embedhash.o main.o aligner.o interval.o edit_distance.o error.o short.o hitset.o model.o perfcounters.o writer.o -lpthread
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `CompactSequence::build(char**, int, int, int)':
./sequence.cpp:304: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./sequence.cpp:307: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./sequence.cpp:308: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./sequence.cpp:313: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::ostream::operator<<(long long)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `CompactSequence::build(char**, int, int, int)':
./sequence.cpp:459: undefined reference to `std::cout'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::ctype<char>::widen(char) const':
/usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::ostream::operator<<(long long)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `CompactSequence::build(char**, int, int, int)':
./sequence.cpp:497: undefined reference to `std::cout'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::ctype<char>::widen(char) const':
/usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `CompactSequence::build(char**, int, int, int)':
./sequence.cpp:304: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./sequence.cpp:304: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./sequence.cpp:307: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./sequence.cpp:497: undefined reference to `std::cout'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::ostream::operator<<(long long)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `CompactSequence::filter(Aligner*, char**, int, char*)':
./sequence.cpp:573: undefined reference to `std::cout'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::ctype<char>::widen(char) const':
/usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::cout'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `CompactSequence::load(char*)':
./sequence.cpp:830: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./sequence.cpp:830: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./sequence.cpp:830: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o:(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o:(.ARM.extab+0x30): undefined reference to `__gxx_personality_v0'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `_GLOBAL__sub_I__ZN15CompactSequenceC2Ev':
/usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: sequence.o: in function `__static_initialization_and_destruction_0':
/usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::~HashTable()':
./hash.cpp:74: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:75: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `__gnu_cxx::__promote_2<double, int, __gnu_cxx::__promote<double, std::__is_integer<double>::__value>::__type, __gnu_cxx::__promote<int, std::__is_integer<int>::__value>::__type>::__type std::pow<double, int>(double, int)':
/usr/arm-linux-gnueabihf/include/c++/10/cmath:418: undefined reference to `pow'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::nextPrime(unsigned int)':
./hash.cpp:1975: undefined reference to `sqrtl'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `__gnu_cxx::__enable_if<std::__is_integer<unsigned int>::__value, double>::__type std::log<unsigned int>(unsigned int)':
/usr/arm-linux-gnueabihf/include/c++/10/cmath:351: undefined reference to `log'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::preProcessEnd()':
./hash.cpp:235: undefined reference to `ceil'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::buildEmbedTable()':
./hash.cpp:486: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:486: undefined reference to `operator delete[](void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:486: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::sortList()':
./hash.cpp:1331: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::ostream::operator<<(long long)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::sortList()':
./hash.cpp:1500: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1438: undefined reference to `std::cout'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1397: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1400: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::ctype<char>::widen(char) const':
/usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::sortList()':
./hash.cpp:1397: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1397: undefined reference to `std::cout'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::removeRepeat(unsigned int)':
./hash.cpp:1527: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::ostream::operator<<(long long)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::removeRepeat(unsigned int)':
./hash.cpp:1666: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1593: undefined reference to `std::cout'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1580: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1582: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::ctype<char>::widen(char) const':
/usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::removeRepeat(unsigned int)':
./hash.cpp:1580: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1580: undefined reference to `std::cout'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::checkRepeat(unsigned int)':
./hash.cpp:1687: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1733: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1735: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hash.cpp:1733: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::nextPrime(unsigned int)':
./hash.cpp:1975: undefined reference to `sqrtl'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `HashTable::checkRepeat(unsigned int)':
./hash.cpp:1766: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o:(.ARM.extab+0x30): undefined reference to `__gxx_personality_v0'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `_GLOBAL__sub_I_timePairAlign':
/usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: hash.o: in function `__static_initialization_and_destruction_0':
/usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: embedhash.o: in function `EmbedHashTable::~EmbedHashTable()':
./embedhash.cpp:47: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./embedhash.cpp:48: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: embedhash.o: in function `__gnu_cxx::__promote_2<double, int, __gnu_cxx::__promote<double, std::__is_integer<double>::__value>::__type, __gnu_cxx::__promote<int, std::__is_integer<int>::__value>::__type>::__type std::pow<double, int>(double, int)':
/usr/arm-linux-gnueabihf/include/c++/10/cmath:418: undefined reference to `pow'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: embedhash.o: in function `EmbedHashTable::nextPrime(unsigned int)':
./embedhash.cpp:700: undefined reference to `sqrtl'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./embedhash.cpp:700: undefined reference to `sqrtl'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: embedhash.o: in function `_GLOBAL__sub_I_statEmbedHashLookup':
/usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: embedhash.o: in function `__static_initialization_and_destruction_0':
/usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `commaList(char*, int&)':
./main.cpp:115: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:119: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:115: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `getCommand(int, char**)':
./main.cpp:248: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1438: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1193: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned int)':
/usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > std::operator+<char, std::char_traits<char>, std::allocator<char> >(char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:1164: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::reserve(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*, unsigned int)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1225: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1193: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1193: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned int)':
/usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > std::operator+<char, std::char_traits<char>, std::allocator<char> >(char const*, std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:1164: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::reserve(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*, unsigned int)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1225: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> > const&)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1193: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `void std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct<char*>(char*, char*, std::forward_iterator_tag)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned int&, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned int)':
/usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_check_length(unsigned int, unsigned int, char const*) const':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `void std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct<char*>(char*, char*, std::forward_iterator_tag)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_check_length(unsigned int, unsigned int, char const*) const':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned int)':
/usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::~new_allocator()':
/usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:89: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned int)':
/usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1438: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned int)':
/usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned int)':
/usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1438: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned int)':
/usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::append(char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1239: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_append(char const*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned int)':
/usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::assign(char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:1438: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_replace(unsigned int, unsigned int, char const*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned int)':
/usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `void std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct<char*>(char*, char*, std::forward_iterator_tag)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned int&, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned int&, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned int&, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned int&, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:219: undefined reference to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned int&, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o:/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:219: more undefined references to `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_create(unsigned int&, unsigned int)' follow
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_check_length(unsigned int, unsigned int, char const*) const':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.h:323: undefined reference to `std::__throw_length_error(char const*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `void std::__cxx11::basic_string<char, std::char_traits<char>, std::allocator<char> >::_M_construct<char*>(char*, char*, std::forward_iterator_tag)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:212: undefined reference to `std::__throw_logic_error(char const*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o:/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_string.tcc:212: more undefined references to `std::__throw_logic_error(char const*)' follow
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::deallocate(char*, unsigned int)':
/usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:133: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__gnu_cxx::new_allocator<char>::~new_allocator()':
/usr/arm-linux-gnueabihf/include/c++/10/ext/new_allocator.h:89: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `align(char*, AlignInfo*, char*, int)':
./main.cpp:368: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:436: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:437: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:438: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:495: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:496: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:497: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:368: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:368: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:436: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_ios<char, std::char_traits<char> >::basic_ios()':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:462: undefined reference to `std::ios_base::ios_base()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_istream<char, std::char_traits<char> >::basic_istream()':
/usr/arm-linux-gnueabihf/include/c++/10/istream:608: undefined reference to `std::basic_ios<char, std::char_traits<char> >::init(std::basic_streambuf<char, std::char_traits<char> >*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_ifstream<char, std::char_traits<char> >::basic_ifstream(char const*, std::_Ios_Openmode)':
/usr/arm-linux-gnueabihf/include/c++/10/fstream:530: undefined reference to `std::basic_filebuf<char, std::char_traits<char> >::basic_filebuf()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:532: undefined reference to `std::basic_ios<char, std::char_traits<char> >::init(std::basic_streambuf<char, std::char_traits<char> >*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_ifstream<char, std::char_traits<char> >::open(char const*, std::_Ios_Openmode)':
/usr/arm-linux-gnueabihf/include/c++/10/fstream:660: undefined reference to `std::basic_filebuf<char, std::char_traits<char> >::open(char const*, std::_Ios_Openmode)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:665: undefined reference to `std::basic_ios<char, std::char_traits<char> >::clear(std::_Ios_Iostate)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::istream::getline(char*, int)':
/usr/arm-linux-gnueabihf/include/c++/10/istream:428: undefined reference to `std::istream::getline(char*, int, char)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_ifstream<char, std::char_traits<char> >::close()':
/usr/arm-linux-gnueabihf/include/c++/10/fstream:732: undefined reference to `std::basic_filebuf<char, std::char_traits<char> >::close()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_filebuf<char, std::char_traits<char> >::~basic_filebuf()':
/usr/arm-linux-gnueabihf/include/c++/10/fstream:249: undefined reference to `std::basic_filebuf<char, std::char_traits<char> >::close()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:252: undefined reference to `std::__basic_file<char>::~__basic_file()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_streambuf<char, std::char_traits<char> >::~basic_streambuf()':
/usr/arm-linux-gnueabihf/include/c++/10/streambuf:205: undefined reference to `std::locale::~locale()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_ios<char, std::char_traits<char> >::~basic_ios()':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::ctype<char>::widen(char) const':
/usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_ios<char, std::char_traits<char> >::setstate(std::_Ios_Iostate)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:158: undefined reference to `std::basic_ios<char, std::char_traits<char> >::clear(std::_Ios_Iostate)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:158: undefined reference to `std::basic_ios<char, std::char_traits<char> >::clear(std::_Ios_Iostate)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_ifstream<char, std::char_traits<char> >::basic_ifstream(char const*, std::_Ios_Openmode)':
/usr/arm-linux-gnueabihf/include/c++/10/fstream:530: undefined reference to `std::basic_filebuf<char, std::char_traits<char> >::~basic_filebuf()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_ios<char, std::char_traits<char> >::~basic_ios()':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:282: undefined reference to `std::ios_base::~ios_base()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:282: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `getVersion(char*)':
./main.cpp:169: undefined reference to `std::basic_ifstream<char, std::char_traits<char> >::~basic_ifstream()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:169: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `std::basic_filebuf<char, std::char_traits<char> >::~basic_filebuf()':
/usr/arm-linux-gnueabihf/include/c++/10/fstream:250: undefined reference to `__cxa_begin_catch'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:250: undefined reference to `__cxa_end_catch'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:250: undefined reference to `vtable for std::basic_ios<char, std::char_traits<char> >'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:250: undefined reference to `VTT for std::basic_ifstream<char, std::char_traits<char> >'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:250: undefined reference to `vtable for std::basic_ifstream<char, std::char_traits<char> >'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:250: undefined reference to `vtable for std::basic_filebuf<char, std::char_traits<char> >'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/fstream:250: undefined reference to `vtable for std::basic_streambuf<char, std::char_traits<char> >'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `getCommand(int, char**)':
./main.cpp:248: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o:(.ARM.extab+0x18): undefined reference to `__gxx_personality_v0'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o:(.ARM.extab+0x84): undefined reference to `__gxx_personality_v0'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o:(.ARM.extab+0x110): undefined reference to `__gxx_personality_v0'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o:(.ARM.extab+0x130): undefined reference to `__gxx_personality_v0'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `main':
./main.cpp:711: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:712: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:718: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:719: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:725: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:736: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:695: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:577: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:580: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:725: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:725: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:736: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./main.cpp:736: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `_GLOBAL__sub_I_pgversion':
/usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o: in function `__static_initialization_and_destruction_0':
/usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: main.o:(.ARM.extab.text.startup+0x0): undefined reference to `__gxx_personality_v0'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::initLookupArray()':
./aligner.cpp:110: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:115: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:120: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:378: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:110: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::init(CompactSequence*, int, int, unsigned int, int, int, int, int, bool)':
./aligner.cpp:455: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:455: undefined reference to `operator delete[](void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:455: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ostream::operator<<(long long)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `ProgressBar::update(long long)':
./util.h:90: undefined reference to `std::cout'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::preProcessHashTables()':
./aligner.cpp:636: undefined reference to `std::cout'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ctype<char>::widen(char) const':
/usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ostream::operator<<(long long)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `ProgressBar::update(long long)':
./util.h:90: undefined reference to `std::cout'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `ProgressBar::update(long long)':
./util.h:69: undefined reference to `std::cout'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ctype<char>::widen(char) const':
/usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::check(int)':
./aligner.cpp:1431: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::check(int)':
./aligner.cpp:1477: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignSingleEnd(AlignInfo*, char*)':
./aligner.cpp:1518: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1527: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1629: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignSingleEnd(AlignInfo*, char*)':
./aligner.cpp:1630: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::getQual(int)':
./hitset.h:268: undefined reference to `log10'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ostream::operator<<(long long)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignSingleEnd(AlignInfo*, char*)':
./aligner.cpp:1582: undefined reference to `std::cout'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignSingleEnd(AlignInfo*, char*)':
./aligner.cpp:1524: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ctype<char>::widen(char) const':
/usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignSingleEnd(AlignInfo*, char*)':
./aligner.cpp:1527: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1527: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1527: undefined reference to `std::cout'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)':
./aligner.cpp:1656: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1657: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1658: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1669: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitPairSet::getQual(int)':
./hitset.h:328: undefined reference to `log10'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)':
./aligner.cpp:1751: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)':
./aligner.cpp:1752: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)':
./aligner.cpp:1753: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1754: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ostream::operator<<(long long)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:202: undefined reference to `std::ostream& std::ostream::_M_insert<long long>(long long)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::endl<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:682: undefined reference to `std::ostream::put(char)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:518: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::operator<< <std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/ostream:611: undefined reference to `std::basic_ostream<char, std::char_traits<char> >& std::__ostream_insert<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&, char const*, int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::basic_ostream<char, std::char_traits<char> >& std::flush<char, std::char_traits<char> >(std::basic_ostream<char, std::char_traits<char> >&)':
/usr/arm-linux-gnueabihf/include/c++/10/ostream:704: undefined reference to `std::ostream::flush()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::init(CompactSequence*, int)':
./hitset.h:132: undefined reference to `std::cout'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)':
./aligner.cpp:1666: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ctype<char>::widen(char) const':
/usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/bits/locale_facets.h:876: undefined reference to `std::ctype<char>::_M_widen_init() const'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `std::ctype<char> const& std::__check_facet<std::ctype<char> >(std::ctype<char> const*)':
/usr/arm-linux-gnueabihf/include/c++/10/bits/basic_ios.h:50: undefined reference to `std::__throw_bad_cast()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::alignPairEnd(AlignInfo*, char*)':
./aligner.cpp:1669: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1669: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::mergeSingleEnd(AlignInfo*, int, char*)':
./aligner.cpp:1797: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1801: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1807: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::getQual(int)':
./hitset.h:268: undefined reference to `log10'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::mergeSingleEnd(AlignInfo*, int, char*)':
./aligner.cpp:1851: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::mergeSingleEnd(AlignInfo*, int, char*)':
./aligner.cpp:1852: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1853: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1854: undefined reference to `operator delete[](void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1787: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1790: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1790: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1790: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1801: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::mergePairEnd(AlignInfo*, int, char*)':
./aligner.cpp:1898: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1899: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1901: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1907: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1908: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1914: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1915: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1888: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitPairSet::getQual(int)':
./hitset.h:328: undefined reference to `log10'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::mergePairEnd(AlignInfo*, int, char*)':
./aligner.cpp:1989: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::mergePairEnd(AlignInfo*, int, char*)':
./aligner.cpp:1990: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::mergePairEnd(AlignInfo*, int, char*)':
./aligner.cpp:1991: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `HitSet::~HitSet()':
./hitset.h:112: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::mergePairEnd(AlignInfo*, int, char*)':
./aligner.cpp:1992: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1993: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1994: undefined reference to `operator delete[](void*)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1995: undefined reference to `operator delete[](void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1996: undefined reference to `operator delete[](void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1915: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1892: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1907: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1892: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:1892: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::load(char*, int)':
./aligner.cpp:2134: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2145: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2163: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2180: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2180: undefined reference to `operator delete[](void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2180: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2134: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2163: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2163: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `Aligner::loadHead(char*)':
./aligner.cpp:2299: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2310: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2327: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2333: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2299: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2333: undefined reference to `operator delete(void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2333: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2327: undefined reference to `operator delete[](void*, unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./aligner.cpp:2327: undefined reference to `__cxa_end_cleanup'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.ARM.extab+0x0): undefined reference to `__gxx_personality_v0'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.ARM.extab+0x54): undefined reference to `__gxx_personality_v0'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.ARM.extab+0x88): undefined reference to `__gxx_personality_v0'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.ARM.extab+0xbc): undefined reference to `__gxx_personality_v0'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.ARM.extab+0xf0): undefined reference to `__gxx_personality_v0'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.ARM.extab+0x124): more undefined references to `__gxx_personality_v0' follow
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `_GLOBAL__sub_I__ZN7AlignerC2Ev':
/usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o: in function `__static_initialization_and_destruction_0':
/usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.data.rel.ro._ZTI6Writer[_ZTI6Writer]+0x0): undefined reference to `vtable for __cxxabiv1::__class_type_info'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.data.rel.ro._ZTI12SimpleWriter[_ZTI12SimpleWriter]+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.data.rel.ro._ZTI16SimplePairWriter[_ZTI16SimplePairWriter]+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.data.rel.ro._ZTI13SamPairWriter[_ZTI13SamPairWriter]+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: aligner.o:(.data.rel.ro._ZTV6Writer[_ZTV6Writer]+0xc): undefined reference to `__cxa_pure_virtual'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: edit_distance.o: in function `_GLOBAL__sub_I_F':
/usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::Init()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: edit_distance.o: in function `__static_initialization_and_destruction_0':
/usr/arm-linux-gnueabihf/include/c++/10/iostream:74: undefined reference to `std::ios_base::Init::~Init()'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: interval.o: in function `IntervalTree::IntervalTree(unsigned int, unsigned int)':
./interval.cpp:45: undefined reference to `ceil'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./interval.cpp:51: undefined reference to `ceil'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./interval.cpp:56: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./interval.cpp:57: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./interval.cpp:58: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./interval.cpp:56: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: interval.o: in function `IntervalTree::load(char*)':
./interval.cpp:353: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./interval.cpp:364: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./interval.cpp:353: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: short.o: in function `ShortRead::init(char**, int, bool, bool, char*, char*)':
./short.cpp:93: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./short.cpp:95: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./short.cpp:93: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: short.o: in function `ShortRead::split(int)':
./short.cpp:477: undefined reference to `ceil'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./short.cpp:478: undefined reference to `operator new[](unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./short.cpp:481: undefined reference to `operator new(unsigned int)'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./short.cpp:478: undefined reference to `__cxa_throw_bad_array_new_length'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: model.o: in function `__gnu_cxx::__promote_2<double, int, __gnu_cxx::__promote<double, std::__is_integer<double>::__value>::__type, __gnu_cxx::__promote<int, std::__is_integer<int>::__value>::__type>::__type std::pow<double, int>(double, int)':
/usr/arm-linux-gnueabihf/include/c++/10/cmath:418: undefined reference to `pow'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: model.o: in function `__gnu_cxx::__promote_2<double, unsigned int, __gnu_cxx::__promote<double, std::__is_integer<double>::__value>::__type, __gnu_cxx::__promote<unsigned int, std::__is_integer<unsigned int>::__value>::__type>::__type std::pow<double, unsigned int>(double, unsigned int)':
/usr/arm-linux-gnueabihf/include/c++/10/cmath:418: undefined reference to `pow'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: /usr/arm-linux-gnueabihf/include/c++/10/cmath:418: undefined reference to `pow'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: model.o: in function `__gnu_cxx::__promote_2<double, int, __gnu_cxx::__promote<double, std::__is_integer<double>::__value>::__type, __gnu_cxx::__promote<int, std::__is_integer<int>::__value>::__type>::__type std::pow<double, int>(double, int)':
/usr/arm-linux-gnueabihf/include/c++/10/cmath:418: undefined reference to `pow'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: model.o: in function `__gnu_cxx::__promote_2<double, unsigned int, __gnu_cxx::__promote<double, std::__is_integer<double>::__value>::__type, __gnu_cxx::__promote<unsigned int, std::__is_integer<unsigned int>::__value>::__type>::__type std::pow<double, unsigned int>(double, unsigned int)':
/usr/arm-linux-gnueabihf/include/c++/10/cmath:418: undefined reference to `pow'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: model.o:/usr/arm-linux-gnueabihf/include/c++/10/cmath:418: more undefined references to `pow' follow
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: writer.o: in function `HitSet::getQual(int)':
./hitset.h:268: undefined reference to `log10'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hitset.h:268: undefined reference to `log10'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: ./hitset.h:268: undefined reference to `log10'
/usr/lib/gcc-cross/arm-linux-gnueabihf/10/../../../../arm-linux-gnueabihf/bin/ld: writer.o:(.data.rel.ro+0x0): undefined reference to `vtable for __cxxabiv1::__si_class_type_info'
collect2: error: ld returned 1 exit status
make[1]: *** [makefile:19: wham] Error 1
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
dh_auto_build: error: make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc returned exit code 2
make: *** [debian/rules:9: binary-arch] Error 25
dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2
--------------------------------------------------------------------------------
Build finished at 2021-01-09T05:14:49Z

Finished
--------


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use
E: Build failure (dpkg-buildpackage died)

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 2660
Build-Time: 19
Distribution: unstable
Fail-Stage: build
Foreign Architectures: armhf
Host Architecture: armhf
Install-Time: 35
Job: wham-align_0.1.5-6
Machine Architecture: amd64
Package: wham-align
Package-Time: 68
Source-Version: 0.1.5-6
Space: 2660
Status: attempted
Version: 0.1.5-6
--------------------------------------------------------------------------------
Finished at 2021-01-09T05:14:49Z
Build needed 00:01:08, 2660k disk space