sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | wham-align 0.1.5-8 (i386) Tue, 23 May 2023 20:09:39 +0000 | +==============================================================================+ Package: wham-align Version: 0.1.5-8 Source Version: 0.1.5-8 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.PCfrM7V82I... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/wham-align-IBtbOo/resolver-CzpBXX' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [192 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.1 MB] Get:3 http://mirror.einval.org/debian unstable/main i386 Packages [9323 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 Packages [9299 kB] Fetched 28.9 MB in 7s (3850 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libdebconfclient0 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 9976 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 libdebconfclient0 arm64 0.270 [9976 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 9976 B in 0s (395 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10357 files and directories currently installed.) Preparing to unpack .../libdebconfclient0_0.270_arm64.deb ... Unpacking libdebconfclient0:arm64 (0.270) over (0.269) ... Setting up libdebconfclient0:arm64 (0.270) ... Processing triggers for libc-bin (2.36-9) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'wham-align' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/wham-align.git Please use: git clone https://salsa.debian.org/med-team/wham-align.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 130 kB of source archives. Get:1 http://mirror.einval.org/debian unstable/main wham-align 0.1.5-8 (dsc) [1987 B] Get:2 http://mirror.einval.org/debian unstable/main wham-align 0.1.5-8 (tar) [120 kB] Get:3 http://mirror.einval.org/debian unstable/main wham-align 0.1.5-8 (diff) [7760 B] Fetched 130 kB in 0s (512 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/wham-align-IBtbOo/wham-align-0.1.5' with '<>' I: NOTICE: Log filtering will replace 'build/wham-align-IBtbOo' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [711 B] Get:5 copy:/<>/apt_archive ./ Packages [753 B] Fetched 2073 B in 0s (118 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-12-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-12-i686-linux-gnu g++-i686-linux-gnu gcc-12-base:i386 gcc-12-cross-base gcc-12-i686-linux-gnu gcc-12-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:i386 libgcc-12-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libicu72 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:i386 libnsl2:i386 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libssl3:i386 libstdc++-12-dev:i386 libstdc++-12-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-i686-linux-gnu gcc-12-doc gcc-12-multilib-i686-linux-gnu manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 krb5-doc:i386 krb5-user:i386 libstdc++-12-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:i386 libarchive-cpio-perl krb5-locales:i386 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-12-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-12-i686-linux-gnu g++-i686-linux-gnu gcc-12-base:i386 gcc-12-cross-base gcc-12-i686-linux-gnu gcc-12-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-12-dev:i386 libgcc-12-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libicu72 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:i386 libnsl2:i386 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libssl3:i386 libstdc++-12-dev:i386 libstdc++-12-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:i386 sensible-utils ucf 0 upgraded, 99 newly installed, 0 to remove and 0 not upgraded. Need to get 88.9 MB of archives. After this operation, 360 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [912 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-5 [15.1 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.44-3 [305 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 libmagic1 arm64 1:5.44-3 [98.5 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.44-3 [42.5 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.21-12 [159 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.22.4-10 [861 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.38.1-5+b1 [86.9 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-1 [36.4 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.11.2-2 [1369 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-3 [276 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.21-12 [495 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 gcc-12-i686-linux-gnu-base arm64 12.2.0-14cross1 [37.7 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 cpp-12-i686-linux-gnu arm64 12.2.0-14cross1 [8762 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 cpp-i686-linux-gnu arm64 4:12.2.0-3 [3968 B] Get:22 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 binutils-i686-linux-gnu arm64 2.40-2 [2362 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 gcc-12-cross-base all 12.2.0-14cross1 [33.2 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libc6-i386-cross all 2.36-8cross1 [1340 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-i386-cross all 12.2.0-14cross1 [59.6 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libgomp1-i386-cross all 12.2.0-14cross1 [118 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libitm1-i386-cross all 12.2.0-14cross1 [27.1 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libatomic1-i386-cross all 12.2.0-14cross1 [7472 B] Get:30 http://mirror.einval.org/debian unstable/main arm64 libasan8-i386-cross all 12.2.0-14cross1 [2080 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-i386-cross all 12.2.0-14cross1 [618 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libubsan1-i386-cross all 12.2.0-14cross1 [870 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-i386-cross all 12.2.0-14cross1 [227 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libgcc-12-dev-i386-cross all 12.2.0-14cross1 [2428 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 gcc-12-i686-linux-gnu arm64 12.2.0-14cross1 [17.4 MB] Get:36 http://mirror.einval.org/debian unstable/main arm64 gcc-i686-linux-gnu arm64 4:12.2.0-3 [1464 B] Get:37 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-i386-cross all 6.1.4-1cross1 [1839 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-i386-cross all 2.36-8cross1 [1715 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libstdc++-12-dev-i386-cross all 12.2.0-14cross1 [2084 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 g++-12-i686-linux-gnu arm64 12.2.0-14cross1 [9598 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 g++-i686-linux-gnu arm64 4:12.2.0-3 [1172 B] Get:42 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-3 [9204 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.2 [620 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b1 [309 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.30-2 [63.4 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-i386 all 12.9 [6704 B] Get:58 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.11.4 [81.2 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-5 [517 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libsub-override-perl all 0.09-4 [9304 B] Get:63 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:65 http://mirror.einval.org/debian unstable/main arm64 libelf1 arm64 0.188-2.1 [173 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1 [101 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.21-12 [1248 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.11.4 [942 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.31-1.2 [27.9 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.31-1.2 [66.4 kB] Get:73 http://mirror.einval.org/debian unstable/main i386 gcc-12-base i386 12.2.0-14 [37.5 kB] Get:74 http://mirror.einval.org/debian unstable/main i386 libgcc-s1 i386 12.2.0-14 [59.5 kB] Get:75 http://mirror.einval.org/debian unstable/main i386 libc6 i386 2.36-9 [2626 kB] Get:76 http://mirror.einval.org/debian unstable/main i386 libasan8 i386 12.2.0-14 [2079 kB] Get:77 http://mirror.einval.org/debian unstable/main i386 libatomic1 i386 12.2.0-14 [7692 B] Get:78 http://mirror.einval.org/debian unstable/main i386 linux-libc-dev i386 6.1.27-1 [1776 kB] Get:79 http://mirror.einval.org/debian unstable/main i386 libcrypt1 i386 1:4.4.33-2 [95.6 kB] Get:80 http://mirror.einval.org/debian unstable/main i386 libcrypt-dev i386 1:4.4.33-2 [126 kB] Get:81 http://mirror.einval.org/debian unstable/main i386 libcom-err2 i386 1.47.0-2 [20.1 kB] Get:82 http://mirror.einval.org/debian unstable/main i386 libkrb5support0 i386 1.20.1-2 [35.1 kB] Get:83 http://mirror.einval.org/debian unstable/main i386 libk5crypto3 i386 1.20.1-2 [82.4 kB] Get:84 http://mirror.einval.org/debian unstable/main i386 libkeyutils1 i386 1.6.3-2 [9284 B] Get:85 http://mirror.einval.org/debian unstable/main i386 libssl3 i386 3.0.8-1 [2018 kB] Get:86 http://mirror.einval.org/debian unstable/main i386 libkrb5-3 i386 1.20.1-2 [359 kB] Get:87 http://mirror.einval.org/debian unstable/main i386 libgssapi-krb5-2 i386 1.20.1-2 [144 kB] Get:88 http://mirror.einval.org/debian unstable/main i386 libtirpc3 i386 1.3.3+ds-1 [92.6 kB] Get:89 http://mirror.einval.org/debian unstable/main i386 libnsl2 i386 1.3.0-2 [42.2 kB] Get:90 http://mirror.einval.org/debian unstable/main i386 libtirpc-dev i386 1.3.3+ds-1 [202 kB] Get:91 http://mirror.einval.org/debian unstable/main i386 libnsl-dev i386 1.3.0-2 [70.6 kB] Get:92 http://mirror.einval.org/debian unstable/main i386 libc6-dev i386 2.36-9 [1718 kB] Get:93 http://mirror.einval.org/debian unstable/main i386 libgomp1 i386 12.2.0-14 [121 kB] Get:94 http://mirror.einval.org/debian unstable/main i386 libitm1 i386 12.2.0-14 [27.6 kB] Get:95 http://mirror.einval.org/debian unstable/main i386 libstdc++6 i386 12.2.0-14 [661 kB] Get:96 http://mirror.einval.org/debian unstable/main i386 libubsan1 i386 12.2.0-14 [870 kB] Get:97 http://mirror.einval.org/debian unstable/main i386 libquadmath0 i386 12.2.0-14 [226 kB] Get:98 http://mirror.einval.org/debian unstable/main i386 libgcc-12-dev i386 12.2.0-14 [2432 kB] Get:99 http://mirror.einval.org/debian unstable/main i386 libstdc++-12-dev i386 12.2.0-14 [2101 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 88.9 MB in 1s (86.9 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 10357 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-5_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.44-3_arm64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../03-libmagic1_1%3a5.44-3_arm64.deb ... Unpacking libmagic1:arm64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.44-3_arm64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-12_arm64.deb ... Unpacking gettext-base (0.21-12) ... 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Preparing to unpack .../98-sbuild-build-depends-main-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-2) ... Setting up libpipeline1:arm64 (1.5.7-1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libicu72:arm64 (72.1-3) ... Setting up gcc-12-cross-base (12.2.0-14cross1) ... Setting up bsdextrautils (2.38.1-5+b1) ... Setting up libmagic-mgc (1:5.44-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up binutils-i686-linux-gnu (2.40-2) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:arm64 (1:5.44-3) ... Setting up linux-libc-dev:i386 (6.1.27-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up file (1:5.44-3) ... Setting up libyaml-perl (1.30-2) ... Setting up libfakeroot:arm64 (1.31-1.2) ... Setting up gcc-12-base:i386 (12.2.0-14) ... Setting up gcc-12-i686-linux-gnu-base:arm64 (12.2.0-14cross1) ... Setting up fakeroot (1.31-1.2) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up linux-libc-dev-i386-cross (6.1.4-1cross1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up autopoint (0.21-12) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libc6-i386-cross (2.36-8cross1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libquadmath0-i386-cross (12.2.0-14cross1) ... Setting up libelf1:arm64 (0.188-2.1) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-12) ... Setting up cpp-12-i686-linux-gnu (12.2.0-14cross1) ... Setting up libtool (2.4.7-5) ... Setting up libatomic1-i386-cross (12.2.0-14cross1) ... Setting up libgomp1-i386-cross (12.2.0-14cross1) ... Setting up libc6-dev-i386-cross (2.36-8cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libgcc-s1-i386-cross (12.2.0-14cross1) ... Setting up dh-autoreconf (20) ... Setting up libitm1-i386-cross (12.2.0-14cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up cpp-i686-linux-gnu (4:12.2.0-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan8-i386-cross (12.2.0-14cross1) ... Setting up libstdc++6-i386-cross (12.2.0-14cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.11.4) ... Setting up libubsan1-i386-cross (12.2.0-14cross1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libgcc-12-dev-i386-cross (12.2.0-14cross1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libstdc++-12-dev-i386-cross (12.2.0-14cross1) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up gcc-12-i686-linux-gnu (12.2.0-14cross1) ... Setting up g++-12-i686-linux-gnu (12.2.0-14cross1) ... Setting up gcc-i686-linux-gnu (4:12.2.0-3) ... Setting up dpkg-cross (2.6.20) ... Setting up g++-i686-linux-gnu (4:12.2.0-3) ... Setting up crossbuild-essential-i386 (12.9) ... Setting up libgcc-s1:i386 (12.2.0-14) ... Setting up libc6:i386 (2.36-9) ... Setting up libasan8:i386 (12.2.0-14) ... Setting up libstdc++6:i386 (12.2.0-14) ... Setting up libitm1:i386 (12.2.0-14) ... Setting up libkeyutils1:i386 (1.6.3-2) ... Setting up libssl3:i386 (3.0.8-1) ... Setting up libcrypt1:i386 (1:4.4.33-2) ... Setting up libcom-err2:i386 (1.47.0-2) ... Setting up libgomp1:i386 (12.2.0-14) ... Setting up libkrb5support0:i386 (1.20.1-2) ... Setting up libquadmath0:i386 (12.2.0-14) ... Setting up libatomic1:i386 (12.2.0-14) ... Setting up libk5crypto3:i386 (1.20.1-2) ... Setting up libubsan1:i386 (12.2.0-14) ... Setting up libcrypt-dev:i386 (1:4.4.33-2) ... Setting up libkrb5-3:i386 (1.20.1-2) ... Setting up libgcc-12-dev:i386 (12.2.0-14) ... Setting up libgssapi-krb5-2:i386 (1.20.1-2) ... Setting up libtirpc3:i386 (1.3.3+ds-1) ... Setting up libtirpc-dev:i386 (1.3.3+ds-1) ... Setting up libnsl2:i386 (1.3.0-2) ... Setting up libnsl-dev:i386 (1.3.0-2) ... Setting up libc6-dev:i386 (2.36-9) ... Setting up libstdc++-12-dev:i386 (12.2.0-14) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.36-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.40-2 dpkg-dev_1.21.22 g++-12_12.2.0-14 gcc-12_12.2.0-14 libc6-dev_2.36-9 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-i386-cross_12.2.0-14cross1 libstdc++6_12.2.0-14 libstdc++6-i386-cross_12.2.0-14cross1 linux-libc-dev_6.1.27-1 Package versions: apt_2.6.0 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-12 autotools-dev_20220109.1 base-files_12.4 base-passwd_3.6.1 bash_5.2.15-2+b2 binutils_2.40-2 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libyaml-perl_1.30-2 libzstd1_1.5.4+dfsg2-5 linux-libc-dev_6.1.27-1 linux-libc-dev-i386-cross_6.1.4-1cross1 login_1:4.13+dfsg1-1+b1 m4_1.4.19-3 make_4.3-4.1 man-db_2.11.2-2 mawk_1.3.4.20200120-3.1 ncurses-base_6.4-4 ncurses-bin_6.4-4 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.36_5.36.0-7 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.17+nmu1 sysvinit-utils_3.06-4 tar_1.34+dfsg-1.2 ucf_3.0043+nmu1 usrmerge_35 util-linux_2.38.1-5+b1 util-linux-extra_2.38.1-5+b1 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: wham-align Binary: wham-align Architecture: any Version: 0.1.5-8 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: http://research.cs.wisc.edu/wham Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/wham-align Vcs-Git: https://salsa.debian.org/med-team/wham-align.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: wham-align deb science optional arch=any Checksums-Sha1: e1ecc46d4ab3af47518fbdee4b8efab2c7a89bb9 120296 wham-align_0.1.5.orig.tar.gz 773e0fe0987dacc59f7eeb4a11b66e8b400a74e8 7760 wham-align_0.1.5-8.debian.tar.xz Checksums-Sha256: c020b999c0d4a3a8e29b32e91dba559b6d6ce3a221081212689c9662828d7b02 120296 wham-align_0.1.5.orig.tar.gz 414f05ebb057aad00779ec62fa010f9df2ac81f9d031851df88402ec72ccd4c3 7760 wham-align_0.1.5-8.debian.tar.xz Files: 56e14e483b0fed5ae5faa4d1621ee3d7 120296 wham-align_0.1.5.orig.tar.gz 5d5a8e7882d16a4347f47248d1b377f7 7760 wham-align_0.1.5-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmAvZR4UHG5wYXRyYTk3 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signature for ./wham-align_0.1.5-8.dsc: no acceptable signature found dpkg-source: info: extracting wham-align in /<> dpkg-source: info: unpacking wham-align_0.1.5.orig.tar.gz dpkg-source: info: unpacking wham-align_0.1.5-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile.patch dpkg-source: info: applying non-x86.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying cross-build.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package wham-align dpkg-buildpackage: info: source version 0.1.5-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f wham wham-build *.o make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/wham-align.substvars debian/files rm -fr -- debian/wham-align/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a -name autom4te.cache -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=i686-linux-gnu-pkg-config CXX=i686-linux-gnu-g\+\+ CC=i686-linux-gnu-gcc make[1]: Entering directory '/<>' i686-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings hash.cpp In file included from hitset.h:31, from hash.h:29, from hash.cpp:27: pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’: pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if (num > nError) { | ~~~~^~~~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’: pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable] 602 | int i, j, offset, min, tmp; | ^~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’: pair.h:682:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:36: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:42: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:45: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~ pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~~ pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable] 685 | int a; | ^ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’: pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~ pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~~ pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable] 756 | int a; | ^ pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’: pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 974 | tmp.high = x.high ^ - x.high | (0LL - (x.low != 0)); | ~~~~~~~^~~~~~~~~~ hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’: hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 86 | int size; | ^~~~ hash.h: In function ‘uint32 murmurHash(int64*, uint32)’: hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable] 86 | uint32 sum = 0; | ^~~ hash.cpp: In member function ‘int HashTable::preProcessEnd()’: hash.cpp:236:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘const uint32’ {aka ‘const unsigned int’} [-Wsign-compare] 236 | if (h >= nHistogram) | ~~^~~~~~~~~~~~~ hash.cpp:285:33: warning: comparison of integer expressions of different signedness: ‘uint32’ {aka ‘unsigned int’} and ‘int’ [-Wsign-compare] 285 | if (useEmbedTables() && tmp > embedShreshold) { | ~~~~^~~~~~~~~~~~~~~~ hash.cpp: In member function ‘void HashTable::setScanThreshold(double)’: hash.cpp:343:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 343 | for (int i = 0; i < nHistogram - 1; i++) { | ~~^~~~~~~~~~~~~~~~ hash.cpp: In member function ‘void HashTable::insert(int64*, unsigned int)’: hash.cpp:460:38: warning: operation on ‘*(((HashTable*)this)->HashTable::overflowPool + ((sizetype)(curOverflowEntry * 4)))’ may be undefined [-Wsequence-point] 460 | overflowPool[curOverflowEntry] = hash.cpp:411:10: warning: unused variable ‘seqOffset’ [-Wunused-variable] 411 | uint32 seqOffset; | ^~~~~~~~~ hash.cpp:413:10: warning: unused variable ‘counter’ [-Wunused-variable] 413 | uint32 counter = 0; | ^~~~~~~ hash.cpp:414:11: warning: variable ‘seqVector’ set but not used [-Wunused-but-set-variable] 414 | int64 * seqVector; | ^~~~~~~~~ hash.cpp:416:11: warning: unused variable ‘target’ [-Wunused-variable] 416 | int64 * target = &tspace[8]; | ^~~~~~ hash.cpp:417:8: warning: unused variable ‘isBloomFilter’ [-Wunused-variable] 417 | bool isBloomFilter; | ^~~~~~~~~~~~~ hash.cpp:418:12: warning: unused variable ‘bloomFilter’ [-Wunused-variable] 418 | uint32 * bloomFilter; | ^~~~~~~~~~~ hash.cpp:419:10: warning: unused variable ‘bloomFilterNum’ [-Wunused-variable] 419 | uint32 bloomFilterNum; | ^~~~~~~~~~~~~~ hash.cpp: In member function ‘int HashTable::buildEmbedTable()’: hash.cpp:469:33: warning: unused variable ‘rest’ [-Wunused-variable] 469 | int64 * query = &ttspace[8], *rest = &ttspace[24], *rest1 = &ttspace[40], | ^~~~ hash.cpp:469:55: warning: unused variable ‘rest1’ [-Wunused-variable] 469 | int64 * query = &ttspace[8], *rest = &ttspace[24], *rest1 = &ttspace[40], | ^~~~~ hash.cpp:470:8: warning: unused variable ‘rest2’ [-Wunused-variable] 470 | *rest2 = &ttspace[56], *noheadkey = &ttspace[72]; | ^~~~~ hash.cpp:470:31: warning: unused variable ‘noheadkey’ [-Wunused-variable] 470 | *rest2 = &ttspace[56], *noheadkey = &ttspace[72]; | ^~~~~~~~~ hash.cpp:472:34: warning: variable ‘startOffset’ set but not used [-Wunused-but-set-variable] 472 | uint32 seqOffset, entryOffset, startOffset; | ^~~~~~~~~~~ hash.cpp: In member function ‘void HashTable::preinsertEmbedTableEntry(int64*, int, int)’: hash.cpp:587:11: warning: unused variable ‘noheadkey’ [-Wunused-variable] 587 | int64 * noheadkey = &tspace[8], *rest = &tspace[24]; | ^~~~~~~~~ hash.cpp:590:8: warning: unused variable ‘subkey4’ [-Wunused-variable] 590 | *subkey4 = &tspace[88], *subkey5 = &tspace[104]; | ^~~~~~~ hash.cpp:590:32: warning: unused variable ‘subkey5’ [-Wunused-variable] 590 | *subkey4 = &tspace[88], *subkey5 = &tspace[104]; | ^~~~~~~ hash.cpp: In member function ‘void HashTable::insertEmbedTableEntry(int64*, uint32, int, int)’: hash.cpp:662:11: warning: unused variable ‘noheadkey’ [-Wunused-variable] 662 | int64 * noheadkey = &tspace[8], *rest = &tspace[24]; | ^~~~~~~~~ hash.cpp:665:8: warning: unused variable ‘subkey4’ [-Wunused-variable] 665 | *subkey4 = &tspace[88], *subkey5 = &tspace[104]; | ^~~~~~~ hash.cpp:665:32: warning: unused variable ‘subkey5’ [-Wunused-variable] 665 | *subkey4 = &tspace[88], *subkey5 = &tspace[104]; | ^~~~~~~ hash.cpp: In member function ‘unsigned int HashTable::lookup(int64*, int64*, int, char*, strand, int, HitSet*, bool)’: hash.cpp:746:7: warning: unused variable ‘num’ [-Wunused-variable] 746 | int num; | ^~~ hash.cpp:750:11: warning: unused variable ‘diff’ [-Wunused-variable] 750 | int64 * diff = &tspace1[8], *target = &tspace2[8]; | ^~~~ hash.cpp:753:10: warning: unused variable ‘sid’ [-Wunused-variable] 753 | uint32 sid, soffset; | ^~~ hash.cpp:753:15: warning: unused variable ‘soffset’ [-Wunused-variable] 753 | uint32 sid, soffset; | ^~~~~~~ hash.cpp: In member function ‘unsigned int HashTable::lookupEmbedTable(int64*, uint32, int, char*, strand, int, HitSet*, bool)’: hash.cpp:962:11: warning: unused variable ‘noheadkey’ [-Wunused-variable] 962 | int64 * noheadkey = &tspace[8], *rest = &tspace[24]; | ^~~~~~~~~ hash.cpp:965:8: warning: unused variable ‘subkey4’ [-Wunused-variable] 965 | *subkey4 = &tspace[88], *subkey5 = &tspace[104]; | ^~~~~~~ hash.cpp:965:32: warning: unused variable ‘subkey5’ [-Wunused-variable] 965 | *subkey4 = &tspace[88], *subkey5 = &tspace[104]; | ^~~~~~~ hash.cpp:973:11: warning: unused variable ‘seqVector’ [-Wunused-variable] 973 | int64 * seqVector = sequence->getSequence(); | ^~~~~~~~~ hash.cpp: In member function ‘bool HashTable::lookup(int64*, uint32)’: hash.cpp:1052:7: warning: unused variable ‘num’ [-Wunused-variable] 1052 | int num; | ^~~ hash.cpp:1056:11: warning: unused variable ‘diff’ [-Wunused-variable] 1056 | int64 * diff = &tspace1[8], *target = &tspace2[8]; | ^~~~ hash.cpp:1056:32: warning: unused variable ‘target’ [-Wunused-variable] 1056 | int64 * diff = &tspace1[8], *target = &tspace2[8]; | ^~~~~~ hash.cpp:1057:11: warning: variable ‘seqVector’ set but not used [-Wunused-but-set-variable] 1057 | int64 * seqVector; | ^~~~~~~~~ hash.cpp:1059:10: warning: unused variable ‘sid’ [-Wunused-variable] 1059 | uint32 sid, soffset; | ^~~ hash.cpp:1059:15: warning: unused variable ‘soffset’ [-Wunused-variable] 1059 | uint32 sid, soffset; | ^~~~~~~ hash.cpp: In member function ‘uint32 HashTable::printOverflowList(uint32, uint32, int64*)’: hash.cpp:1184:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 1184 | for (int i = 0; i < keyOffset / BITS_PER_BASE; i++) hash.cpp:1188:23: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 1188 | for (int i = 0; i < (lenSeq - keyOffset - lenKey) / BITS_PER_BASE; i++) hash.cpp:1247:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 1247 | for (int j = 0; j < strlen(set[i].str); j++) | ~~^~~~~~~~~~~~~~~~~~~~ hash.cpp:1254:25: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 1254 | for (int j = 0; j < strlen(set[i].str); j++) | ~~^~~~~~~~~~~~~~~~~~~~ hash.cpp:1137:11: warning: unused variable ‘diff’ [-Wunused-variable] 1137 | int64 * diff = &tspace1[8], *target = &tspace2[8]; | ^~~~ hash.cpp: In member function ‘int HashTable::sortList()’: hash.cpp:1430:14: warning: variable ‘pool’ set but not used [-Wunused-but-set-variable] 1430 | uint32 * pool; | ^~~~ hash.cpp:1321:34: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable] 1321 | uint32 entryOffset, seqOffset, offset; | ^~~~~~ hash.cpp: In member function ‘void HashTable::checkRepeat(uint32)’: hash.cpp:1673:34: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable] 1673 | uint32 entryOffset, seqOffset, offset; | ^~~~~~ hash.cpp:1690:5: warning: label ‘restart’ defined but not used [-Wunused-label] 1690 | restart: if (buckets[bucketId] == HASH_EMPTY | ^~~~~~~ hash.cpp: In member function ‘unsigned int HashTable::lookupEmbedTable(int64*, uint32, int, char*, strand, int, HitSet*, bool)’: hash.cpp:1049:1: warning: control reaches end of non-void function [-Wreturn-type] 1049 | } | ^ In file included from hash.cpp:31: edit_distance.h: At global scope: edit_distance.h:25:18: warning: ‘obj_score_mat’ defined but not used [-Wunused-variable] 25 | static score_mat obj_score_mat = { 1, 1, 1, 1 }; | ^~~~~~~~~~~~~ i686-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings embedhash.cpp In file included from hitset.h:31, from hash.h:29, from embedhash.cpp:27: pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’: pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if (num > nError) { | ~~~~^~~~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’: pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable] 602 | int i, j, offset, min, tmp; | ^~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’: pair.h:682:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:36: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:42: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:45: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~ pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~~ pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable] 685 | int a; | ^ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’: pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~ pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~~ pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable] 756 | int a; | ^ pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’: pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 974 | tmp.high = x.high ^ - x.high | (0LL - (x.low != 0)); | ~~~~~~~^~~~~~~~~~ hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’: hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 86 | int size; | ^~~~ hash.h: In function ‘uint32 murmurHash(int64*, uint32)’: hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable] 86 | uint32 sum = 0; | ^~~ embedhash.cpp: In member function ‘int EmbedHashTable::preProcessEnd()’: embedhash.cpp:137:16: warning: unused variable ‘ln2’ [-Wunused-variable] 137 | const double ln2 = log(2); | ^~~ embedhash.cpp: In member function ‘void EmbedHashTable::setScanThreshold(double)’: embedhash.cpp:253:9: warning: unused variable ‘sum’ [-Wunused-variable] 253 | int64 sum = 0; | ^~~ embedhash.cpp:255:9: warning: unused variable ‘top’ [-Wunused-variable] 255 | int64 top = total - total * r; | ^~~ embedhash.cpp: In member function ‘void EmbedHashTable::insert(int64*, unsigned int)’: embedhash.cpp:369:38: warning: operation on ‘*(((EmbedHashTable*)this)->EmbedHashTable::overflowPool + ((sizetype)(curOverflowEntry * 4)))’ may be undefined [-Wsequence-point] 369 | overflowPool[curOverflowEntry] = embedhash.cpp:328:10: warning: unused variable ‘seqOffset’ [-Wunused-variable] 328 | uint32 seqOffset; | ^~~~~~~~~ embedhash.cpp:330:10: warning: unused variable ‘counter’ [-Wunused-variable] 330 | uint32 counter = 0; | ^~~~~~~ embedhash.cpp:331:11: warning: variable ‘seqVector’ set but not used [-Wunused-but-set-variable] 331 | int64 * seqVector; | ^~~~~~~~~ embedhash.cpp:333:11: warning: unused variable ‘target’ [-Wunused-variable] 333 | int64 * target = &tspace[8]; | ^~~~~~ embedhash.cpp:334:8: warning: unused variable ‘isBloomFilter’ [-Wunused-variable] 334 | bool isBloomFilter; | ^~~~~~~~~~~~~ embedhash.cpp:335:12: warning: unused variable ‘bloomFilter’ [-Wunused-variable] 335 | uint32 * bloomFilter; | ^~~~~~~~~~~ embedhash.cpp:336:10: warning: unused variable ‘bloomFilterNum’ [-Wunused-variable] 336 | uint32 bloomFilterNum; | ^~~~~~~~~~~~~~ embedhash.cpp: In member function ‘unsigned int EmbedHashTable::lookup(int64*, int64*, int, char*, strand, int, HitSet*, bool)’: embedhash.cpp:385:7: warning: unused variable ‘num’ [-Wunused-variable] 385 | int num; | ^~~ embedhash.cpp:387:34: warning: variable ‘startOffset’ set but not used [-Wunused-but-set-variable] 387 | uint32 seqOffset, entryOffset, startOffset; | ^~~~~~~~~~~ embedhash.cpp:389:11: warning: unused variable ‘diff’ [-Wunused-variable] 389 | int64 * diff = &tspace1[8], *target = &tspace2[8]; | ^~~~ embedhash.cpp:392:10: warning: unused variable ‘sid’ [-Wunused-variable] 392 | uint32 sid, soffset; | ^~~ embedhash.cpp:392:15: warning: unused variable ‘soffset’ [-Wunused-variable] 392 | uint32 sid, soffset; | ^~~~~~~ In file included from embedhash.cpp:32: edit_distance.h: At global scope: edit_distance.h:25:18: warning: ‘obj_score_mat’ defined but not used [-Wunused-variable] 25 | static score_mat obj_score_mat = { 1, 1, 1, 1 }; | ^~~~~~~~~~~~~ i686-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings main.cpp In file included from hitset.h:31, from hash.h:29, from aligner.h:25, from main.cpp:34: pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’: pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if (num > nError) { | ~~~~^~~~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’: pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable] 602 | int i, j, offset, min, tmp; | ^~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’: pair.h:682:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:36: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:42: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:45: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~ pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~~ pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable] 685 | int a; | ^ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’: pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~ pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~~ pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable] 756 | int a; | ^ pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’: pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 974 | tmp.high = x.high ^ - x.high | (0LL - (x.low != 0)); | ~~~~~~~^~~~~~~~~~ hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’: hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 86 | int size; | ^~~~ hash.h: In function ‘uint32 murmurHash(int64*, uint32)’: hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable] 86 | uint32 sum = 0; | ^~~ main.cpp: In function ‘int getArguVal(char*)’: main.cpp:159:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 159 | else if (*c = 'g' || *c == 'G') | ~~~^~~~~~~~~~~~~~~~~~ main.cpp: In function ‘int align(char*, AlignInfo*, char*, int)’: main.cpp:350:7: warning: unused variable ‘i’ [-Wunused-variable] 350 | int i, j, ret; | ^ main.cpp:350:10: warning: unused variable ‘j’ [-Wunused-variable] 350 | int i, j, ret; | ^ main.cpp: In function ‘int main(int, char**)’: main.cpp:523:7: warning: unused variable ‘numKeys’ [-Wunused-variable] 523 | int numKeys; | ^~~~~~~ main.cpp:526:7: warning: unused variable ‘nSeq’ [-Wunused-variable] 526 | int nSeq = 1; | ^~~~ main.cpp:532:21: warning: unused variable ‘sequence’ [-Wunused-variable] 532 | CompactSequence * sequence; | ^~~~~~~~ main.cpp:534:15: warning: unused variable ‘threadpool’ [-Wunused-variable] 534 | pthread_t * threadpool; | ^~~~~~~~~~ main.cpp:536:9: warning: unused variable ‘threadid’ [-Wunused-variable] 536 | int * threadid; | ^~~~~~~~ In file included from main.cpp:38: edit_distance.h: At global scope: edit_distance.h:25:18: warning: ‘obj_score_mat’ defined but not used [-Wunused-variable] 25 | static score_mat obj_score_mat = { 1, 1, 1, 1 }; | ^~~~~~~~~~~~~ main.cpp: In function ‘void mergeFiles(std::string)’: main.cpp:269:21: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 269 | sprintf(buf, ".t%d ", i); | ^~ main.cpp:269:18: note: directive argument in the range [0, 2147483646] 269 | sprintf(buf, ".t%d ", i); | ^~~~~~~ main.cpp:269:12: note: ‘sprintf’ output between 5 and 14 bytes into a destination of size 10 269 | sprintf(buf, ".t%d ", i); | ~~~~~~~^~~~~~~~~~~~~~~~~ main.cpp:276:21: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=] 276 | sprintf(buf, ".t%d", i); | ^~ main.cpp:276:18: note: directive argument in the range [0, 2147483646] 276 | sprintf(buf, ".t%d", i); | ^~~~~~ main.cpp:276:12: note: ‘sprintf’ output between 4 and 13 bytes into a destination of size 10 276 | sprintf(buf, ".t%d", i); | ~~~~~~~^~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings sequence.cpp In file included from hitset.h:31, from hash.h:29, from aligner.h:25, from sequence.cpp:30: pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’: pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if (num > nError) { | ~~~~^~~~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’: pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable] 602 | int i, j, offset, min, tmp; | ^~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’: pair.h:682:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:36: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:42: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:45: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~ pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~~ pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable] 685 | int a; | ^ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’: pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~ pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~~ pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable] 756 | int a; | ^ pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’: pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 974 | tmp.high = x.high ^ - x.high | (0LL - (x.low != 0)); | ~~~~~~~^~~~~~~~~~ hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’: hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 86 | int size; | ^~~~ hash.h: In function ‘uint32 murmurHash(int64*, uint32)’: hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable] 86 | uint32 sum = 0; | ^~~ sequence.cpp: In member function ‘void CompactSequence::extractFileName(char*, char*)’: sequence.cpp:97:10: warning: unused variable ‘str’ [-Wunused-variable] 97 | char * str; | ^~~ sequence.cpp: In member function ‘int CompactSequence::build(char**, int, int, int)’: sequence.cpp:238:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 238 | for (i = 0; i < numFile; i++) { | ~~^~~~~~~~~ sequence.cpp:309:13: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 309 | ( i = 0; i < nSeq; i++) | ~~^~~~~~ sequence.cpp:324:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 324 | for (i = 0; i < numFile; i++) { | ~~^~~~~~~~~ sequence.cpp:344:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 344 | for (j = 0; j < numError + 1; j++) { | ~~^~~~~~~~~~~~~~ sequence.cpp:410:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 410 | if (lenSegmentN > numError + 1) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~ sequence.cpp:429:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 429 | if (lenSegmentN > numError + 1) { | ~~~~~~~~~~~~^~~~~~~~~~~~~~ sequence.cpp:223:16: warning: unused variable ‘step’ [-Wunused-variable] 223 | unsigned int step, nextstep; | ^~~~ sequence.cpp:223:22: warning: unused variable ‘nextstep’ [-Wunused-variable] 223 | unsigned int step, nextstep; | ^~~~~~~~ sequence.cpp: In member function ‘int CompactSequence::filter(Aligner*, char**, int, char*)’: sequence.cpp:534:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 534 | for (i = 0; i < numFile; i++) { | ~~^~~~~~~~~ sequence.cpp:599:27: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 599 | if (lenSegmentN > nError + 1) | ~~~~~~~~~~~~^~~~~~~~~~~~ sequence.cpp:520:16: warning: unused variable ‘step’ [-Wunused-variable] 520 | unsigned int step, nextstep; | ^~~~ sequence.cpp:520:22: warning: unused variable ‘nextstep’ [-Wunused-variable] 520 | unsigned int step, nextstep; | ^~~~~~~~ sequence.cpp:521:9: warning: unused variable ‘numFileChar’ [-Wunused-variable] 521 | int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment; | ^~~~~~~~~~~ sequence.cpp:521:22: warning: unused variable ‘numFileNSeg’ [-Wunused-variable] 521 | int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment; | ^~~~~~~~~~~ sequence.cpp:521:35: warning: unused variable ‘numFileSeq’ [-Wunused-variable] 521 | int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment; | ^~~~~~~~~~ sequence.cpp:521:47: warning: unused variable ‘nChar’ [-Wunused-variable] 521 | int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment; | ^~~~~ sequence.cpp:521:54: warning: unused variable ‘nNSegment’ [-Wunused-variable] 521 | int64 numFileChar, numFileNSeg, numFileSeq, nChar, nNSegment; | ^~~~~~~~~ sequence.cpp: In member function ‘int CompactSequence::save(char*)’: sequence.cpp:738:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 738 | if (ret != size) { | ~~~~^~~~~~~ sequence.cpp: In member function ‘int CompactSequence::load(char*)’: sequence.cpp:804:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 804 | if (ret != size) { | ~~~~^~~~~~~ sequence.cpp: In member function ‘int CompactSequence::build(char**, int, int, int)’: sequence.cpp:506:15: warning: ‘offsetInOrgSeq’ may be used uninitialized [-Wmaybe-uninitialized] 506 | itree->flush(offsetInCmptSeq, 0, curSeq, offsetInOrgSeq); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequence.cpp:221:33: note: ‘offsetInOrgSeq’ was declared here 221 | unsigned int offsetInCmptSeq, offsetInOrgSeq; | ^~~~~~~~~~~~~~ sequence.cpp: In static member function ‘static void CompactSequence::compose(char*, int, int64*)’: sequence.cpp:674:20: warning: ‘code’ may be used uninitialized [-Wmaybe-uninitialized] 674 | forward_word = ~((~code) | (-1LL << forward_offset)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sequence.cpp:630:23: note: ‘code’ was declared here 630 | int64 forward_word, code; | ^~~~ i686-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings aligner.cpp In file included from hitset.h:31, from hash.h:29, from aligner.h:25, from aligner.cpp:25: pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’: pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if (num > nError) { | ~~~~^~~~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’: pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable] 602 | int i, j, offset, min, tmp; | ^~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’: pair.h:682:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:36: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:42: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:45: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~ pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~~ pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable] 685 | int a; | ^ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’: pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~ pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~~ pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable] 756 | int a; | ^ pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’: pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 974 | tmp.high = x.high ^ - x.high | (0LL - (x.low != 0)); | ~~~~~~~^~~~~~~~~~ hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’: hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 86 | int size; | ^~~~ hash.h: In function ‘uint32 murmurHash(int64*, uint32)’: hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable] 86 | uint32 sum = 0; | ^~~ aligner.cpp: In member function ‘int Aligner::initLookupArray()’: aligner.cpp:365:37: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] 365 | if ((indexBits[i] >> j) & 0x1 == 1) { | ~~~~^~~~ aligner.cpp:371:37: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] 371 | if ((indexBits[i] >> j) & 0x1 == 1) { | ~~~~^~~~ aligner.cpp: In member function ‘int Aligner::preProcessHashTables()’: aligner.cpp:534:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 534 | for (i = 0; i < nHashTable; i++) { | ~~^~~~~~~~~~~~ aligner.cpp:712:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 712 | for (i = 0; i < nHashTable; i++) { | ~~^~~~~~~~~~~~ aligner.cpp: In member function ‘int Aligner::build(char*)’: aligner.cpp:724:16: warning: unused variable ‘i’ [-Wunused-variable] 724 | unsigned int i, j; | ^ aligner.cpp:724:19: warning: unused variable ‘j’ [-Wunused-variable] 724 | unsigned int i, j; | ^ aligner.cpp: In member function ‘int Aligner::buildHashTables(char*)’: aligner.cpp:807:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 807 | for (i = 0; i < nHashTable; i++) { | ~~^~~~~~~~~~~~ aligner.cpp:844:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 844 | for (i1 = 0; i1 < lenPartition * (nPartition - 1); i1 += lenPartition) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:864:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 864 | for (i1 = 0; i1 < lenPartition * (nPartition - 2); i1 += lenPartition) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:871:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 871 | for (i2 = i1; i2 < lenPartition * (nPartition - 2); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:894:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 894 | for (i1 = 0; i1 < lenPartition * (nPartition - 3); i1 += lenPartition) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:901:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 901 | for (i2 = i1; i2 < lenPartition * (nPartition - 3); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:909:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 909 | for (i3 = i2; i3 < lenPartition * (nPartition - 3); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:928:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 928 | for (i1 = 0; i1 < lenPartition * (nPartition - 4); i1 += lenPartition) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:930:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 930 | for (i2 = i1; i2 < lenPartition * (nPartition - 4); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:933:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 933 | for (i3 = i2; i3 < lenPartition * (nPartition - 4); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:936:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 936 | for (i4 = i3; i4 < lenPartition * (nPartition - 4); i4 += | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:951:23: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 951 | for (i1 = 0; i1 < lenPartition * (nPartition - 5); i1 += lenPartition) { | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:953:26: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 953 | for (i2 = i1; i2 < lenPartition * (nPartition - 5); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:956:28: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 956 | for (i3 = i2; i3 < lenPartition * (nPartition - 5); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:959:30: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 959 | for (i4 = i3; i4 < lenPartition * (nPartition - 5); i4 += | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:962:32: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 962 | for (i5 = i4; i5 < lenPartition * (nPartition - 5); i5 += | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aligner.cpp:983:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 983 | for (i = 0; i < nHashTable; i++) { | ~~^~~~~~~~~~~~ aligner.cpp:1006:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1006 | for (i = 0; i < nHashTable; i++) { | ~~^~~~~~~~~~~~ aligner.cpp: In member function ‘unsigned int Aligner::alignFirst(int64*, char*, strand, int, HitSet*, bool)’: aligner.cpp:1035:10: warning: unused variable ‘offset’ [-Wunused-variable] 1035 | uint32 offset; | ^~~~~~ aligner.cpp:1039:7: warning: unused variable ‘nHit’ [-Wunused-variable] 1039 | int nHit = 0; | ^~~~ aligner.cpp: In member function ‘unsigned int Aligner::align(int64*, char*, strand, int, HitSet*, bool, bool)’: aligner.cpp:1119:10: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable] 1119 | uint32 offset; | ^~~~~~ aligner.cpp:1123:7: warning: variable ‘nHit’ set but not used [-Wunused-but-set-variable] 1123 | int nHit = 0; | ^~~~ aligner.cpp: In member function ‘int Aligner::check(int)’: aligner.cpp:1436:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1436 | for (i = 0; i < num; i++) { | ~~^~~~~ aligner.cpp:1452:19: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1452 | for (j = 0; j < nError; j++) { | ~~^~~~~~~~ aligner.cpp:1426:7: warning: unused variable ‘ret’ [-Wunused-variable] 1426 | int ret; | ^~~ aligner.cpp: In member function ‘AlignRes Aligner::alignSingleEnd(AlignInfo*, char*)’: aligner.cpp:1541:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1541 | for (i = 0; i < nHashTable; i++) { | ~~^~~~~~~~~~~~ aligner.cpp:1547:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1547 | for (i = 0; i < res.nRead; i++) { | ~~^~~~~~~~~~~ aligner.cpp:1629:3: warning: deleting object of abstract class type ‘Writer’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor] 1629 | delete writer; | ^~~~~~~~~~~~~ aligner.cpp:1502:10: warning: unused variable ‘file’ [-Wunused-variable] 1502 | FILE * file = NULL, *alfile = NULL, *unfile = NULL; | ^~~~ aligner.cpp:1502:24: warning: unused variable ‘alfile’ [-Wunused-variable] 1502 | FILE * file = NULL, *alfile = NULL, *unfile = NULL; | ^~~~~~ aligner.cpp:1502:40: warning: unused variable ‘unfile’ [-Wunused-variable] 1502 | FILE * file = NULL, *alfile = NULL, *unfile = NULL; | ^~~~~~ aligner.cpp:1505:7: warning: unused variable ‘strand’ [-Wunused-variable] 1505 | int strand; | ^~~~~~ aligner.cpp:1508:9: warning: unused variable ‘ratio’ [-Wunused-variable] 1508 | float ratio; | ^~~~~ aligner.cpp:1514:31: warning: unused variable ‘strata’ [-Wunused-variable] 1514 | bool sorted = info->sorted, strata = info->strata; | ^~~~~~ aligner.cpp: In member function ‘AlignRes Aligner::alignPairEnd(AlignInfo*, char*)’: aligner.cpp:1685:17: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare] 1685 | for (i = 0; i < res.nRead; i++) { | ~~^~~~~~~~~~~ aligner.cpp:1754:3: warning: deleting object of abstract class type ‘Writer’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor] 1754 | delete writer; | ^~~~~~~~~~~~~ aligner.cpp:1637:8: warning: unused variable ‘success’ [-Wunused-variable] 1637 | bool success; | ^~~~~~~ aligner.cpp:1638:16: warning: unused variable ‘nSuccessRead’ [-Wunused-variable] 1638 | unsigned int nSuccessRead = 0; | ^~~~~~~~~~~~ aligner.cpp:1639:10: warning: unused variable ‘file’ [-Wunused-variable] 1639 | FILE * file = NULL; | ^~~~ aligner.cpp:1646:8: warning: unused variable ‘mateFilename’ [-Wunused-variable] 1646 | char mateFilename[256]; | ^~~~~~~~~~~~ aligner.cpp:1652:31: warning: unused variable ‘strata’ [-Wunused-variable] 1652 | bool sorted = info->sorted, strata = info->strata; | ^~~~~~ aligner.cpp: In member function ‘AlignRes Aligner::mergeSingleEnd(AlignInfo*, int, char*)’: aligner.cpp:1851:3: warning: deleting object of abstract class type ‘Writer’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor] 1851 | delete writer; | ^~~~~~~~~~~~~ aligner.cpp:1775:10: warning: unused variable ‘ret’ [-Wunused-variable] 1775 | int i, ret; | ^~~ aligner.cpp: In member function ‘AlignRes Aligner::mergePairEnd(AlignInfo*, int, char*)’: aligner.cpp:1989:3: warning: deleting object of abstract class type ‘Writer’ which has non-virtual destructor will cause undefined behavior [-Wdelete-non-virtual-dtor] 1989 | delete writer; | ^~~~~~~~~~~~~ aligner.cpp:1874:10: warning: unused variable ‘ret’ [-Wunused-variable] 1874 | int i, ret; | ^~~ In member function ‘void HashTable::setLookupInfo(int, int*)’, inlined from ‘int Aligner::initLookupArray()’ at aligner.cpp:375:32: hash.h:353:18: warning: ‘keySpan’ may be used uninitialized [-Wmaybe-uninitialized] 353 | widthKeySpan = keySpan; | ~~~~~~~~~~~~~^~~~~~~~~ aligner.cpp: In member function ‘int Aligner::initLookupArray()’: aligner.cpp:360:7: note: ‘keySpan’ was declared here 360 | int keySpan; | ^~~~~~~ aligner.cpp: In member function ‘unsigned int Aligner::alignFirst(int64*, char*, strand, int, HitSet*, bool)’: aligner.cpp:1097:3: warning: ‘ret’ may be used uninitialized [-Wmaybe-uninitialized] 1097 | if (ret == MSG_HITSETFULL) | ^~ aligner.cpp:1040:7: note: ‘ret’ was declared here 1040 | int ret; | ^~~ i686-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings interval.cpp interval.cpp: In constructor ‘IntervalTree::IntervalTree(uint32, uint32)’: interval.cpp:67:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 67 | for (int i = 0; i < numLevel - 1; i++) { | ~~^~~~~~~~~~~~~~ interval.cpp: In member function ‘int IntervalTree::save(char*)’: interval.cpp:304:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 304 | if (ret != numLEntry) { | ~~~~^~~~~~~~~~~~ interval.cpp:310:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 310 | if (ret != numIEntry) { | ~~~~^~~~~~~~~~~~ interval.cpp: In member function ‘int IntervalTree::load(char*)’: interval.cpp:359:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 359 | if (ret != numLEntry) { | ~~~~^~~~~~~~~~~~ interval.cpp:370:11: warning: comparison of integer expressions of different signedness: ‘int’ and ‘uint32’ {aka ‘unsigned int’} [-Wsign-compare] 370 | if (ret != numIEntry) { | ~~~~^~~~~~~~~~~~ i686-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings edit_distance.cpp edit_distance.cpp: In function ‘scoreinfo edit_distance(char*, char*, int, int, char*, char*, int)’: edit_distance.cpp:61:7: warning: unused variable ‘i’ [-Wunused-variable] 61 | int i; | ^ edit_distance.cpp: In function ‘scoreinfo edit_distance_align(int**, char**, char*, char*, int, int, char*, char*, int)’: edit_distance.cpp:181:10: warning: unused variable ‘tmp_trace’ [-Wunused-variable] 181 | char tmp_trace = traceback[i][j]; | ^~~~~~~~~ edit_distance.cpp:132:14: warning: unused variable ‘x’ [-Wunused-variable] 132 | int k = 0, x = 0, y = 0; | ^ edit_distance.cpp:132:21: warning: unused variable ‘y’ [-Wunused-variable] 132 | int k = 0, x = 0, y = 0; | ^ edit_distance.cpp:178:7: warning: unused variable ‘kk’ [-Wunused-variable] 178 | int kk = 0; | ^~ i686-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings error.cpp error.cpp: In function ‘void elog(int, char*, ...)’: error.cpp:31:9: warning: unused variable ‘filename’ [-Wunused-variable] 31 | char *filename = __FILE__; | ^~~~~~~~ error.cpp:32:7: warning: unused variable ‘lineno’ [-Wunused-variable] 32 | int lineno = __LINE__; | ^~~~~~ i686-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings short.cpp short.cpp: In member function ‘int ShortRead::preProcess(int)’: short.cpp:212:16: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 212 | while (len = readLine(file, str, 256)) { | ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~ short.cpp: In member function ‘ShortRead** ShortRead::split(int)’: short.cpp:483:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare] 483 | if (szPartition <= nRead - curRead) | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~ short.cpp: In member function ‘int ShortRead::load(int)’: short.cpp:422:28: warning: ‘code’ may be used uninitialized [-Wmaybe-uninitialized] 422 | forward_word = ~((~code) | (-1LL << forward_offset)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ short.cpp:310:38: note: ‘code’ was declared here 310 | int64 forward_word, backward_word, code; | ^~~~ short.cpp: In member function ‘ShortRead** ShortRead::split(int)’: short.cpp:503:45: warning: ‘.t’ directive writing 2 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 503 | sprintf(partitions[i]->alFileName, "%s.t%d", alFileName, i); | ^~ short.cpp:503:42: note: directive argument in the range [0, 536870911] 503 | sprintf(partitions[i]->alFileName, "%s.t%d", alFileName, i); | ^~~~~~~~ short.cpp:503:14: note: ‘sprintf’ output between 4 and 267 bytes into a destination of size 256 503 | sprintf(partitions[i]->alFileName, "%s.t%d", alFileName, i); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ short.cpp:510:45: warning: ‘.t’ directive writing 2 bytes into a region of size between 1 and 256 [-Wformat-overflow=] 510 | sprintf(partitions[i]->unFileName, "%s.t%d", unFileName, i); | ^~ short.cpp:510:42: note: directive argument in the range [0, 536870911] 510 | sprintf(partitions[i]->unFileName, "%s.t%d", unFileName, i); | ^~~~~~~~ short.cpp:510:14: note: ‘sprintf’ output between 4 and 267 bytes into a destination of size 256 510 | sprintf(partitions[i]->unFileName, "%s.t%d", unFileName, i); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings hitset.cpp In file included from hitset.h:31, from hitset.cpp:1: pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’: pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if (num > nError) { | ~~~~^~~~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’: pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable] 602 | int i, j, offset, min, tmp; | ^~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’: pair.h:682:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:36: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:42: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:45: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~ pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~~ pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable] 685 | int a; | ^ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’: pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~ pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~~ pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable] 756 | int a; | ^ pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’: pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 974 | tmp.high = x.high ^ - x.high | (0LL - (x.low != 0)); | ~~~~~~~^~~~~~~~~~ hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’: hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 86 | int size; | ^~~~ hitset.cpp: In member function ‘int HitPairSet::build(HitSet*, HitSet*, uint32, uint32, bool (*)[2], bool)’: hitset.cpp:90:8: warning: unused variable ‘pairMatch’ [-Wunused-variable] 90 | bool pairMatch = false; | ^~~~~~~~~ i686-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings perfcounters.cpp i686-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings model.cpp model.cpp: In static member function ‘static int AlignerModel::estimateNumPartition(unsigned int, int, int, bool)’: model.cpp:76:16: warning: variable ‘nIndex’ set but not used [-Wunused-but-set-variable] 76 | unsigned int nIndex, nLookup, nBucket; | ^~~~~~ model.cpp: In static member function ‘static unsigned int AlignerModel::getFreeMemory()’: model.cpp:166:28: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 166 | fscanf(file, "MemTotal: %d kB\n", &memTotal); | ~^ ~~~~~~~~~ | | | | int* unsigned int* | %d model.cpp:167:27: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 167 | fscanf(file, "MemFree: %d kB\n", &memFree); | ~^ ~~~~~~~~ | | | | int* unsigned int* | %d model.cpp:168:27: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 168 | fscanf(file, "Buffers: %d kB\n", &memBuffer); | ~^ ~~~~~~~~~~ | | | | int* unsigned int* | %d model.cpp:169:26: warning: format ‘%d’ expects argument of type ‘int*’, but argument 3 has type ‘unsigned int*’ [-Wformat=] 169 | fscanf(file, "Cached: %d kB\n", &memCache); | ~^ ~~~~~~~~~ | | | | int* unsigned int* | %d model.cpp: In static member function ‘static unsigned int AlignerModel::estimateHashtableSpace(unsigned int, int, int, int)’: model.cpp:198:26: warning: variable ‘p2’ set but not used [-Wunused-but-set-variable] 198 | double nSpace, p0, p1, p2; | ^~ i686-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings writer.cpp In file included from hitset.h:31, from writer.h:26, from writer.cpp:21: pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’: pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if (num > nError) { | ~~~~^~~~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’: pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable] 602 | int i, j, offset, min, tmp; | ^~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’: pair.h:682:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:36: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:42: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:45: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~ pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~~ pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable] 685 | int a; | ^ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’: pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~ pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~~ pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable] 756 | int a; | ^ pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’: pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 974 | tmp.high = x.high ^ - x.high | (0LL - (x.low != 0)); | ~~~~~~~^~~~~~~~~~ hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’: hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 86 | int size; | ^~~~ writer.cpp: In member function ‘void SimpleWriter::writeField(int64*, int64*, strand)’: writer.cpp:154:27: warning: suggest parentheses around ‘-’ in operand of ‘&’ [-Wparentheses] 154 | j = BITS_PER_LONGWORD - (length * BITS_PER_BASE) & BITS_LONGWORD_MASK; writer.cpp:148:10: warning: unused variable ‘sid’ [-Wunused-variable] 148 | uint32 sid = 0, soffset = 0; | ^~~ writer.cpp:148:19: warning: unused variable ‘soffset’ [-Wunused-variable] 148 | uint32 sid = 0, soffset = 0; | ^~~~~~~ writer.cpp: In member function ‘void SamWriter::writeValidAlignment(int, HitSet*)’: writer.cpp:271:7: warning: unused variable ‘i’ [-Wunused-variable] 271 | int i, j, k, h, lastDiff; | ^ writer.cpp:271:10: warning: unused variable ‘j’ [-Wunused-variable] 271 | int i, j, k, h, lastDiff; | ^ writer.cpp:271:13: warning: unused variable ‘k’ [-Wunused-variable] 271 | int i, j, k, h, lastDiff; | ^ writer.cpp:271:19: warning: unused variable ‘lastDiff’ [-Wunused-variable] 271 | int i, j, k, h, lastDiff; | ^~~~~~~~ writer.cpp:272:9: warning: unused variable ‘code1’ [-Wunused-variable] 272 | int64 code1, code2; | ^~~~~ writer.cpp:272:16: warning: unused variable ‘code2’ [-Wunused-variable] 272 | int64 code1, code2; | ^~~~~ writer.cpp:278:10: warning: unused variable ‘p’ [-Wunused-variable] 278 | double p, sump; | ^ writer.cpp:278:13: warning: unused variable ‘sump’ [-Wunused-variable] 278 | double p, sump; | ^~~~ writer.cpp:279:30: warning: unused variable ‘tag’ [-Wunused-variable] 279 | char qseq[128], rseq[128], tag[128]; | ^~~ writer.cpp:281:8: warning: unused variable ‘shortread’ [-Wunused-variable] 281 | char shortread[256]; | ^~~~~~~~~ writer.cpp: In member function ‘void SamWriter::getCIGAR(char*, char*, char*, ErrorVector)’: writer.cpp:382:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 382 | for (i = 0, j = 0; i < strlen(query); i++, j++) { | ~~^~~~~~~~~~~~~~~ writer.cpp: In member function ‘void SamWriter::getMDfield(char*, char*, char*, ErrorVector)’: writer.cpp:431:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘size_t’ {aka ‘unsigned int’} [-Wsign-compare] 431 | for (i = 0, j = 0; i < strlen(query); i++, j++) { | ~~^~~~~~~~~~~~~~~ writer.cpp: In member function ‘void SamPairWriter::writeValidAlignment(int, HitSet*)’: writer.cpp:619:47: warning: suggest parentheses around comparison in operand of ‘&’ [-Wparentheses] 619 | if (!mate1Unmatch && !mate2Unmatch & sid1 == sid2) { | ~~~~~^~~~~~~ i686-linux-gnu-g++ -o wham sequence.o hash.o embedhash.o main.o aligner.o interval.o edit_distance.o error.o short.o hitset.o model.o perfcounters.o writer.o -lpthread i686-linux-gnu-g++ -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fsigned-char -O3 -Wno-write-strings builder.cpp In file included from hitset.h:31, from hash.h:29, from aligner.h:25, from builder.cpp:31: pair.h: In static member function ‘static ErrorVector PairAligner::pairAlignDBA(int64*, int64*, int, int, int)’: pair.h:265:13: warning: comparison of integer expressions of different signedness: ‘int64’ {aka ‘long long unsigned int’} and ‘int’ [-Wsign-compare] 265 | if (num > nError) { | ~~~~^~~~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignDP(int64*, int64*, int, int, int, bool)’: pair.h:602:15: warning: unused variable ‘offset’ [-Wunused-variable] 602 | int i, j, offset, min, tmp; | ^~~~~~ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector64(int64*, int64*, int, int, int)’: pair.h:682:33: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:36: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:39: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:42: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:682:45: warning: ISO C++17 does not allow ‘register’ storage class specifier [-Wregister] 682 | register unsigned long long P, M, X, U, Y; | ^ pair.h:684:15: warning: unused variable ‘num’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~ pair.h:684:20: warning: unused variable ‘base’ [-Wunused-variable] 684 | int i, p, num, base, Cscore; | ^~~~ pair.h:685:9: warning: unused variable ‘a’ [-Wunused-variable] 685 | int a; | ^ pair.h: In static member function ‘static bool PairAligner::pairAlignBitVector(int64*, int64*, int, int, int)’: pair.h:755:15: warning: unused variable ‘num’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~ pair.h:755:20: warning: unused variable ‘base’ [-Wunused-variable] 755 | int i, p, num, base, Cscore; | ^~~~ pair.h:756:9: warning: unused variable ‘a’ [-Wunused-variable] 756 | int a; | ^ pair.h: In static member function ‘static int128 PairAligner::Bit128RemoveSmearRightmost1(int128)’: pair.h:974:23: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses] 974 | tmp.high = x.high ^ - x.high | (0LL - (x.low != 0)); | ~~~~~~~^~~~~~~~~~ hitset.h: In constructor ‘HitSet::HitSet(int, int, int, bool, bool)’: hitset.h:86:9: warning: variable ‘size’ set but not used [-Wunused-but-set-variable] 86 | int size; | ^~~~ hash.h: In function ‘uint32 murmurHash(int64*, uint32)’: hash.h:86:10: warning: unused variable ‘sum’ [-Wunused-variable] 86 | uint32 sum = 0; | ^~~ builder.cpp: In function ‘int getArguVal(char*)’: builder.cpp:115:15: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 115 | else if (*c = 'g' || *c == 'G') | ~~~^~~~~~~~~~~~~~~~~~ builder.cpp: In function ‘int main(int, char**)’: builder.cpp:159:7: warning: unused variable ‘build_mode’ [-Wunused-variable] 159 | int build_mode = BUILD_MODE_ALL; | ^~~~~~~~~~ builder.cpp:277:7: warning: unused variable ‘nChar’ [-Wunused-variable] 277 | int nChar = sequence->getNum(); | ^~~~~ In file included from builder.cpp:34: edit_distance.h: At global scope: edit_distance.h:25:18: warning: ‘obj_score_mat’ defined but not used [-Wunused-variable] 25 | static score_mat obj_score_mat = { 1, 1, 1, 1 }; | ^~~~~~~~~~~~~ i686-linux-gnu-g++ -o wham-build sequence.o hash.o embedhash.o builder.o aligner.o interval.o edit_distance.o error.o short.o hitset.o model.o perfcounters.o writer.o -lpthread make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/wham-align.substvars rm -fr -- debian/.debhelper/generated/wham-align/ debian/wham-align/ debian/tmp/ dh_auto_install --destdir=debian/wham-align/ -a install -m0755 -d /<>/debian/wham-align dh_install -a install -m0755 -d debian/wham-align/usr/bin cp --reflink=auto -a ./wham ./wham-build debian/wham-align/usr/bin/ dh_installdocs -a install -m0755 -d debian/wham-align/usr/share/doc/wham-align install -m0755 -d debian/wham-align/usr/share/doc/wham-align cp --reflink=auto -a ./MANUAL debian/wham-align/usr/share/doc/wham-align cd './reads/..' && find 'reads' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /<>/debian/wham-align/usr/share/doc/wham-align cd './sequences/..' && find 'sequences' \( -type f -or -type l \) -and ! -empty -print0 | LC_ALL=C sort -z | xargs -0 -I {} cp --reflink=auto --parents -dp {} /<>/debian/wham-align/usr/share/doc/wham-align cp --reflink=auto -a ./debian/README.test debian/wham-align/usr/share/doc/wham-align cp --reflink=auto -a ./debian/tests/ref/README.test_data debian/wham-align/usr/share/doc/wham-align chmod -R u\+rw,go=rX debian/wham-align/usr/share/doc install -p -m0644 debian/copyright debian/wham-align/usr/share/doc/wham-align/copyright install -m0755 -d debian/wham-align/usr/share/doc-base/ install -p -m0644 debian/wham-align.doc-base debian/wham-align/usr/share/doc-base/wham-align.wham dh_installchangelogs -a install -m0755 -d debian/wham-align/usr/share/doc/wham-align install -p -m0644 debian/.debhelper/generated/wham-align/dh_installchangelogs.dch.trimmed debian/wham-align/usr/share/doc/wham-align/changelog.Debian dh_installexamples -a install -m0755 -d debian/wham-align/usr/share/doc/wham-align/examples cp --reflink=auto -a ./reads debian/wham-align/usr/share/doc/wham-align/examples cp --reflink=auto -a ./sequences debian/wham-align/usr/share/doc/wham-align/examples cp --reflink=auto -a ./debian/tests/ref debian/wham-align/usr/share/doc/wham-align/examples dh_installman -a install -m0755 -d debian/wham-align/usr/share/man/man1/ install -p -m0644 ./debian/wham-build.1 debian/wham-align/usr/share/man/man1/wham-build.1 install -m0755 -d debian/wham-align/usr/share/man/man1/ install -p -m0644 ./debian/wham.1 debian/wham-align/usr/share/man/man1/wham.1 man-recode --to-code UTF-8 --suffix .dh-new debian/wham-align/usr/share/man/man1/wham-build.1 debian/wham-align/usr/share/man/man1/wham.1 mv debian/wham-align/usr/share/man/man1/wham-build.1.dh-new debian/wham-align/usr/share/man/man1/wham-build.1 mv debian/wham-align/usr/share/man/man1/wham.1.dh-new debian/wham-align/usr/share/man/man1/wham.1 chmod 0644 -- debian/wham-align/usr/share/man/man1/wham-build.1 debian/wham-align/usr/share/man/man1/wham.1 dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a cd debian/wham-align chmod a-x usr/share/doc/wham-align/MANUAL usr/share/doc/wham-align/changelog.Debian usr/share/doc/wham-align/sequences/chr1_100k.fa usr/share/man/man1/wham-build.1 usr/share/man/man1/wham.1 gzip -9nf usr/share/doc/wham-align/MANUAL usr/share/doc/wham-align/changelog.Debian usr/share/doc/wham-align/sequences/chr1_100k.fa usr/share/man/man1/wham-build.1 usr/share/man/man1/wham.1 cd '/<>' dh_fixperms -a find debian/wham-align ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/wham-align/usr/share/doc -type f -a -true -a ! -regex 'debian/wham-align/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/wham-align/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/wham-align/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/wham-align -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/wham-align/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_dwz -a install -m0755 -d debian/wham-align/usr/lib/debug/.dwz/i386-linux-gnu dwz -mdebian/wham-align/usr/lib/debug/.dwz/i386-linux-gnu/wham-align.debug -M/usr/lib/debug/.dwz/i386-linux-gnu/wham-align.debug -- debian/wham-align/usr/bin/wham debian/wham-align/usr/bin/wham-build i686-linux-gnu-objcopy --compress-debug-sections debian/wham-align/usr/lib/debug/.dwz/i386-linux-gnu/wham-align.debug chmod 0644 -- debian/wham-align/usr/lib/debug/.dwz/i386-linux-gnu/wham-align.debug dh_strip -a install -m0755 -d debian/.debhelper/wham-align/dbgsym-root/usr/lib/debug/.build-id/9b i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/wham-align/usr/bin/wham debian/.debhelper/wham-align/dbgsym-root/usr/lib/debug/.build-id/9b/f8c0bbaea39e14cb389f722c4f26909da94c33.debug chmod 0644 -- debian/.debhelper/wham-align/dbgsym-root/usr/lib/debug/.build-id/9b/f8c0bbaea39e14cb389f722c4f26909da94c33.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/wham-align/usr/bin/wham i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/wham-align/dbgsym-root/usr/lib/debug/.build-id/9b/f8c0bbaea39e14cb389f722c4f26909da94c33.debug debian/wham-align/usr/bin/wham install -m0755 -d debian/.debhelper/wham-align/dbgsym-root/usr/lib/debug/.build-id/f9 i686-linux-gnu-objcopy --only-keep-debug --compress-debug-sections debian/wham-align/usr/bin/wham-build debian/.debhelper/wham-align/dbgsym-root/usr/lib/debug/.build-id/f9/521431817f519fed88d7bbb18fc003dfee8f3f.debug chmod 0644 -- debian/.debhelper/wham-align/dbgsym-root/usr/lib/debug/.build-id/f9/521431817f519fed88d7bbb18fc003dfee8f3f.debug i686-linux-gnu-strip --remove-section=.comment --remove-section=.note debian/wham-align/usr/bin/wham-build i686-linux-gnu-objcopy --add-gnu-debuglink debian/.debhelper/wham-align/dbgsym-root/usr/lib/debug/.build-id/f9/521431817f519fed88d7bbb18fc003dfee8f3f.debug debian/wham-align/usr/bin/wham-build install -m0755 -d debian/.debhelper/wham-align/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/wham-align/usr/lib/debug/.dwz/i386-linux-gnu debian/.debhelper/wham-align/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/wham-align/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/wham-align/usr/lib/debug install -m0755 -d debian/.debhelper/wham-align/dbgsym-root/usr/share/doc ln -s wham-align debian/.debhelper/wham-align/dbgsym-root/usr/share/doc/wham-align-dbgsym install -m0755 -d debian/.debhelper/wham-align dh_makeshlibs -a rm -f debian/wham-align/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/wham-align/DEBIAN dpkg-shlibdeps -Tdebian/wham-align.substvars debian/wham-align/usr/bin/wham debian/wham-align/usr/bin/wham-build dh_installdeb -a install -m0755 -d debian/wham-align/DEBIAN dh_gencontrol -a install -m0755 -d debian/wham-align/DEBIAN echo misc:Depends= >> debian/wham-align.substvars echo misc:Pre-Depends= >> debian/wham-align.substvars install -m0755 -d debian/.debhelper/wham-align/dbgsym-root/DEBIAN dpkg-gencontrol -pwham-align -ldebian/changelog -Tdebian/wham-align.substvars -Pdebian/.debhelper/wham-align/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -UBuilt-Using -DAuto-Built-Package=debug-symbols -UProtected -DPackage=wham-align-dbgsym "-DDepends=wham-align (= \${binary:Version})" "-DDescription=debug symbols for wham-align" "-DBuild-Ids=9bf8c0bbaea39e14cb389f722c4f26909da94c33 f9521431817f519fed88d7bbb18fc003dfee8f3f" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/wham-align/dbgsym-root/DEBIAN/control dpkg-gencontrol -pwham-align -ldebian/changelog -Tdebian/wham-align.substvars -Pdebian/wham-align chmod 0644 -- debian/wham-align/DEBIAN/control dh_md5sums -a install -m0755 -d debian/wham-align/DEBIAN cd debian/wham-align >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/wham-align/DEBIAN/md5sums install -m0755 -d debian/.debhelper/wham-align/dbgsym-root/DEBIAN cd debian/.debhelper/wham-align/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/wham-align/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/wham-align .. dpkg-deb: building package 'wham-align' in '../wham-align_0.1.5-8_i386.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/wham-align/dbgsym-root .. dpkg-deb: building package 'wham-align-dbgsym' in '../wham-align-dbgsym_0.1.5-8_i386.deb'. dpkg-genbuildinfo --build=any -O../wham-align_0.1.5-8_i386.buildinfo dpkg-genchanges --build=any -O../wham-align_0.1.5-8_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-05-23T20:12:14Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ wham-align_0.1.5-8_i386.changes: -------------------------------- Format: 1.8 Date: Fri, 19 Feb 2021 12:34:48 +0530 Source: wham-align Binary: wham-align wham-align-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 0.1.5-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: wham-align - Wisconsin's High-Throughput Alignment Method Changes: wham-align (0.1.5-8) unstable; urgency=medium . * Team Upload. * Append -fsignedchar in CXXFLAFS for autopkgtests fix Checksums-Sha1: 0209fae61d689f2c7bf456835411b3a87f0f3771 519944 wham-align-dbgsym_0.1.5-8_i386.deb 2c02421fb079f9973585b32403167ada8c7958ed 5110 wham-align_0.1.5-8_i386.buildinfo 98fd9476a7d0d8149b868b1e85d0adb60d38765a 181348 wham-align_0.1.5-8_i386.deb Checksums-Sha256: 46adee9466c093aaff8897835bdb43f9b4bb8994e16f22d45f7707670d099877 519944 wham-align-dbgsym_0.1.5-8_i386.deb 3219585dc83187759244b099f0cb111e9c8c318d32f707a52d4b00f32a02932a 5110 wham-align_0.1.5-8_i386.buildinfo ca590cdcf2239c81eebf46c6e7c79fe6501b8d9a018a138f443b1241aac6b31f 181348 wham-align_0.1.5-8_i386.deb Files: 27373959a0056a3a250b091be68c4401 519944 debug optional wham-align-dbgsym_0.1.5-8_i386.deb ddda317a671255d29379e4a71531dff7 5110 science optional wham-align_0.1.5-8_i386.buildinfo 13d8068407e658a67d801ee6745f7007 181348 science optional wham-align_0.1.5-8_i386.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: wham-align Binary: wham-align wham-align-dbgsym Architecture: i386 Version: 0.1.5-8 Checksums-Md5: 27373959a0056a3a250b091be68c4401 519944 wham-align-dbgsym_0.1.5-8_i386.deb 13d8068407e658a67d801ee6745f7007 181348 wham-align_0.1.5-8_i386.deb Checksums-Sha1: 0209fae61d689f2c7bf456835411b3a87f0f3771 519944 wham-align-dbgsym_0.1.5-8_i386.deb 98fd9476a7d0d8149b868b1e85d0adb60d38765a 181348 wham-align_0.1.5-8_i386.deb Checksums-Sha256: 46adee9466c093aaff8897835bdb43f9b4bb8994e16f22d45f7707670d099877 519944 wham-align-dbgsym_0.1.5-8_i386.deb ca590cdcf2239c81eebf46c6e7c79fe6501b8d9a018a138f443b1241aac6b31f 181348 wham-align_0.1.5-8_i386.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Tue, 23 May 2023 20:12:13 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-12), autotools-dev (= 20220109.1), base-files (= 12.4), base-passwd (= 3.6.1), bash (= 5.2.15-2+b2), binutils (= 2.40-2), binutils-aarch64-linux-gnu (= 2.40-2), binutils-common (= 2.40-2), bsdextrautils (= 2.38.1-5+b1), bsdutils (= 1:2.38.1-5+b1), build-essential (= 12.9), bzip2 (= 1.0.8-5+b1), coreutils (= 9.1-1), cpp (= 4:12.2.0-3), cpp-12 (= 12.2.0-14), dash (= 0.5.12-2), debconf (= 1.5.82), debhelper (= 13.11.4), debianutils (= 5.7-0.4), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.22), dpkg-dev (= 1.21.22), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-4), g++ (= 4:12.2.0-3), g++-12 (= 12.2.0-14), gcc (= 4:12.2.0-3), gcc-12 (= 12.2.0-14), gcc-12-base (= 12.2.0-14), gettext (= 0.21-12), gettext-base (= 0.21-12), grep (= 3.8-5), groff-base (= 1.22.4-10), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libasan8 (= 12.2.0-14), libatomic1 (= 12.2.0-14), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.0.9-1), libaudit1 (= 1:3.0.9-1), libbinutils (= 2.40-2), libblkid1 (= 2.38.1-5+b1), libbz2-1.0 (= 1.0.8-5+b1), libc-bin (= 2.36-9), libc-dev-bin (= 2.36-9), libc6 (= 2.36-9), libc6-dev (= 2.36-9), libcap-ng0 (= 0.8.3-1+b3), libcap2 (= 1:2.66-4), libcc1-0 (= 12.2.0-14), libcom-err2 (= 1.47.0-2), libcrypt-dev (= 1:4.4.33-2), libcrypt1 (= 1:4.4.33-2), libctf-nobfd0 (= 2.40-2), libctf0 (= 2.40-2), libdb5.3 (= 5.3.28+dfsg2-1), libdebconfclient0 (= 0.270), libdebhelper-perl (= 13.11.4), libdpkg-perl (= 1.21.22), libelf1 (= 0.188-2.1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-12-dev (= 12.2.0-14), libgcc-s1 (= 12.2.0-14), libgcrypt20 (= 1.10.1-3), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.2.1+dfsg1-1.1), libgomp1 (= 12.2.0-14), libgpg-error0 (= 1.46-1), libgprofng0 (= 2.40-2), libgssapi-krb5-2 (= 1.20.1-2), libhwasan0 (= 12.2.0-14), libicu72 (= 72.1-3), libisl23 (= 0.25-1), libitm1 (= 12.2.0-14), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-2), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-2), libkrb5support0 (= 1.20.1-2), liblsan0 (= 12.2.0-14), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.0.4-2), libmount1 (= 2.38.1-5+b1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnumber-compare-perl (= 0.03-3), libpam-modules (= 1.5.2-6), libpam-modules-bin (= 1.5.2-6), libpam-runtime (= 1.5.2-6), libpam0g (= 1.5.2-6), libpcre2-8-0 (= 10.42-1), libperl5.36 (= 5.36.0-7), libpipeline1 (= 1.5.7-1), libseccomp2 (= 2.5.4-1+b3), libselinux1 (= 3.4-1+b5), libsmartcols1 (= 2.38.1-5+b1), libssl3 (= 3.0.8-1), libstdc++-12-dev (= 12.2.0-14), libstdc++6 (= 12.2.0-14), libsub-override-perl (= 0.09-4), libsystemd0 (= 252.6-1), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4-4), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libtsan2 (= 12.2.0-14), libubsan1 (= 12.2.0-14), libuchardet0 (= 0.0.7-1), libudev1 (= 252.6-1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-5+b1), libxml2 (= 2.9.14+dfsg-1.2), libzstd1 (= 1.5.4+dfsg2-5), linux-libc-dev (= 6.1.27-1), login (= 1:4.13+dfsg1-1+b1), m4 (= 1.4.19-3), make (= 4.3-4.1), man-db (= 2.11.2-2), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.4-4), ncurses-bin (= 6.4-4), patch (= 2.7.6-7), perl (= 5.36.0-7), perl-base (= 5.36.0-7), perl-modules-5.36 (= 5.36.0-7), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-1), sensible-utils (= 0.0.17+nmu1), sysvinit-utils (= 3.06-4), tar (= 1.34+dfsg-1.2), usrmerge (= 35), util-linux (= 2.38.1-5+b1), util-linux-extra (= 2.38.1-5+b1), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1613718288" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ wham-align-dbgsym_0.1.5-8_i386.deb ---------------------------------- new Debian package, version 2.0. size 519944 bytes: control archive=644 bytes. 422 bytes, 12 lines control 297 bytes, 3 lines md5sums Package: wham-align-dbgsym Source: wham-align Version: 0.1.5-8 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 551 Depends: wham-align (= 0.1.5-8) Section: debug Priority: optional Description: debug symbols for wham-align Build-Ids: 9bf8c0bbaea39e14cb389f722c4f26909da94c33 f9521431817f519fed88d7bbb18fc003dfee8f3f drwxr-xr-x root/root 0 2021-02-19 07:04 ./ drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/ drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/lib/ drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/lib/debug/.build-id/9b/ -rw-r--r-- root/root 282324 2021-02-19 07:04 ./usr/lib/debug/.build-id/9b/f8c0bbaea39e14cb389f722c4f26909da94c33.debug drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/lib/debug/.build-id/f9/ -rw-r--r-- root/root 228012 2021-02-19 07:04 ./usr/lib/debug/.build-id/f9/521431817f519fed88d7bbb18fc003dfee8f3f.debug drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/lib/debug/.dwz/i386-linux-gnu/ -rw-r--r-- root/root 39320 2021-02-19 07:04 ./usr/lib/debug/.dwz/i386-linux-gnu/wham-align.debug drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/share/ drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-02-19 07:04 ./usr/share/doc/wham-align-dbgsym -> wham-align wham-align_0.1.5-8_i386.deb --------------------------- new Debian package, version 2.0. size 181348 bytes: control archive=1252 bytes. 521 bytes, 13 lines control 1995 bytes, 26 lines md5sums Package: wham-align Version: 0.1.5-8 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 766 Depends: libc6 (>= 2.34), libgcc-s1 (>= 4.2), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: http://research.cs.wisc.edu/wham Description: Wisconsin's High-Throughput Alignment Method This package provides functionality analogous to BWA or bowtie in aligning reads from next-generation DNA sequencing machines against a reference genome. drwxr-xr-x root/root 0 2021-02-19 07:04 ./ drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/ drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/bin/ -rwxr-xr-x root/root 313340 2021-02-19 07:04 ./usr/bin/wham -rwxr-xr-x root/root 296836 2021-02-19 07:04 ./usr/bin/wham-build drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/share/ drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/share/doc-base/ -rw-r--r-- root/root 273 2021-02-16 17:56 ./usr/share/doc-base/wham-align.wham drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/share/doc/wham-align/ -rw-r--r-- root/root 2483 2021-02-19 07:04 ./usr/share/doc/wham-align/MANUAL.gz -rw-r--r-- root/root 278 2021-02-16 17:56 ./usr/share/doc/wham-align/README.test -rw-r--r-- root/root 150 2021-02-16 17:56 ./usr/share/doc/wham-align/README.test_data -rw-r--r-- root/root 865 2021-02-19 07:04 ./usr/share/doc/wham-align/changelog.Debian.gz -rw-r--r-- root/root 1297 2021-02-16 17:56 ./usr/share/doc/wham-align/copyright drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/share/doc/wham-align/examples/ drwxr-xr-x root/root 0 2012-11-26 20:40 ./usr/share/doc/wham-align/examples/reads/ -rw-r--r-- root/root 898 2011-03-18 21:47 ./usr/share/doc/wham-align/examples/reads/sample.fq -rw-r--r-- root/root 878 2011-04-17 03:34 ./usr/share/doc/wham-align/examples/reads/sample_pair_1.fq -rw-r--r-- root/root 878 2011-04-17 03:34 ./usr/share/doc/wham-align/examples/reads/sample_pair_2.fq drwxr-xr-x root/root 0 2021-02-16 17:56 ./usr/share/doc/wham-align/examples/ref/ -rw-r--r-- root/root 150 2021-02-16 17:56 ./usr/share/doc/wham-align/examples/ref/README.test_data -rw-r--r-- root/root 231 2021-02-16 17:56 ./usr/share/doc/wham-align/examples/ref/output1 -rw-r--r-- root/root 719 2021-02-16 17:56 ./usr/share/doc/wham-align/examples/ref/output2 -rw-r--r-- root/root 244 2021-02-16 17:56 ./usr/share/doc/wham-align/examples/ref/output3 -rw-r--r-- root/root 326 2021-02-16 17:56 ./usr/share/doc/wham-align/examples/ref/output4 -rw-r--r-- root/root 0 2021-02-16 17:56 ./usr/share/doc/wham-align/examples/ref/output5 -rw-r--r-- root/root 463 2021-02-16 17:56 ./usr/share/doc/wham-align/examples/ref/output6 -rw-r--r-- root/root 231 2021-02-16 17:56 ./usr/share/doc/wham-align/examples/ref/output7 drwxr-xr-x root/root 0 2012-11-26 20:40 ./usr/share/doc/wham-align/examples/sequences/ -rw-r--r-- root/root 101955 2011-02-08 11:01 ./usr/share/doc/wham-align/examples/sequences/chr1_100k.fa drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/share/doc/wham-align/reads/ -rw-r--r-- root/root 898 2011-03-18 21:47 ./usr/share/doc/wham-align/reads/sample.fq -rw-r--r-- root/root 878 2011-04-17 03:34 ./usr/share/doc/wham-align/reads/sample_pair_1.fq -rw-r--r-- root/root 878 2011-04-17 03:34 ./usr/share/doc/wham-align/reads/sample_pair_2.fq drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/share/doc/wham-align/sequences/ -rw-r--r-- root/root 29876 2011-02-08 11:01 ./usr/share/doc/wham-align/sequences/chr1_100k.fa.gz drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/share/man/ drwxr-xr-x root/root 0 2021-02-19 07:04 ./usr/share/man/man1/ -rw-r--r-- root/root 689 2021-02-19 07:04 ./usr/share/man/man1/wham-build.1.gz -rw-r--r-- root/root 993 2021-02-19 07:04 ./usr/share/man/man1/wham.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1293 B] Get:5 copy:/<>/apt_archive ./ Packages [1370 B] Fetched 3278 B in 0s (184 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:i386 t1utils unzip 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. Need to get 13.5 MB of archives. After this operation, 53.2 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-1.3 [69.0 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.0.8-1 [1373 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20230311 [153 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.65-1 [31.2 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libassuan0 arm64 2.5.5-5 [45.9 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libreadline8 arm64 8.2-1.3 [155 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.2.40-1.1 [557 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.40.1-2 [786 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.2.40-1.1 [903 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.15.0-1 [2906 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.40+b2 [66.1 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-2+b1 [10.4 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.008-2 [15.9 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b1 [22.9 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:23 http://mirror.einval.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.63-1+b1 [42.8 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libberkeleydb-perl arm64 0.64-2+b1 [121 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:29 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.17-1 [90.4 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.81-1 [98.6 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.55-1 [220 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:33 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.14-1 [18.1 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b1 [35.3 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.46-1 [13.5 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.28-2 [16.4 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-2+b1 [24.2 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.113-1 [10.6 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.989-1 [50.5 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:42 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.35-1 [128 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.58-2 [43.6 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-1+b1 [34.0 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b1 [98.8 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.83-2+b1 [24.2 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b1 [28.3 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 6.44-1 [81.7 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b1 [7924 B] Get:74 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.92-2+b1 [308 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.081-2 [219 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.22-1 [25.3 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.68-1 [186 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.023-2 [11.0 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004004-1 [13.3 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.13-5 [38.9 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:97 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.10-1+b3 [167 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3 [10.9 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.26-2+b1 [12.4 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b1 [17.1 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1 [11.2 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.634-1+b2 [42.4 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.003+ds-1 [95.6 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.003+ds-1 [97.1 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:110 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.33-1 [57.0 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.28-1 [28.2 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b1 [24.1 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b1 [8396 B] Get:114 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.16-1 [13.0 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-1+b2 [196 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b1 [72.2 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-2 [19.9 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.16-1 [116 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.86+ds-1 [32.8 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.10-5 [58.0 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-28 [157 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.116.3 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.5 MB in 0s (51.9 MB/s) Selecting previously unselected package netbase. (Reading database ... 16650 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.8-1_arm64.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.65-1_arm64.deb ... Unpacking diffstat (1.65-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../005-libassuan0_2.5.5-5_arm64.deb ... Unpacking libassuan0:arm64 (2.5.5-5) ... Selecting previously unselected package libreadline8:arm64. 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Unpacking libapt-pkg-perl (0.1.40+b2) ... Selecting previously unselected package libb-hooks-op-check-perl:arm64. Preparing to unpack .../013-libb-hooks-op-check-perl_0.22-2+b1_arm64.deb ... Unpacking libb-hooks-op-check-perl:arm64 (0.22-2+b1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../014-libdynaloader-functions-perl_0.003-3_all.deb ... Unpacking libdynaloader-functions-perl (0.003-3) ... Selecting previously unselected package libdevel-callchecker-perl:arm64. Preparing to unpack .../015-libdevel-callchecker-perl_0.008-2_arm64.deb ... Unpacking libdevel-callchecker-perl:arm64 (0.008-2) ... Selecting previously unselected package libparams-classify-perl:arm64. Preparing to unpack .../016-libparams-classify-perl_0.015-2+b1_arm64.deb ... Unpacking libparams-classify-perl:arm64 (0.015-2+b1) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../017-libmodule-runtime-perl_0.016-2_all.deb ... 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Setting up liblz1:arm64 (1.13-5) ... Setting up libberkeleydb-perl:arm64 (0.64-2+b1) ... Setting up plzip (1.10-5) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2) ... Setting up libmouse-perl (2.5.10-1+b3) ... Setting up libdata-messagepack-perl (1.02-1+b1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.14-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.46-1) ... Setting up libyaml-0-2:arm64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libcpanel-json-xs-perl:arm64 (4.35-1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2+b1) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:arm64 (3.40.1-2) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.86+ds-1) ... Setting up libio-interactive-perl (1.023-2) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:arm64 (7+b1) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:arm64 (2.10-2) ... Setting up libtime-moment-perl (0.44-2+b1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:arm64 (2.5.5-5) ... Setting up libconfig-tiny-perl (2.28-2) ... Setting up libsereal-encoder-perl (5.003+ds-1) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004004-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.33-1) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.65-1) ... Setting up libvariable-magic-perl (0.63-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-2+b1) ... Setting up libparams-util-perl (1.102-2+b1) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:arm64 (3.5.9-1+b2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libsub-name-perl:arm64 (0.26-2+b1) ... Setting up libsyntax-keyword-try-perl (0.28-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:arm64 (0.634-1+b2) ... Setting up libpath-tiny-perl (0.144-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-3) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libclass-xsaccessor-perl (1.19-4+b1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b1) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.0.8-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b1) ... Setting up libperlio-gzip-perl (0.20-1+b1) ... Setting up readline-common (8.2-1.3) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.003+ds-1) ... Setting up libmarkdown2:arm64 (2.2.7-2) ... Setting up liburi-perl (5.17-1) ... Setting up iso-codes (4.15.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b1) ... Setting up libnet-ssleay-perl:arm64 (1.92-2+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libreadline8:arm64 (8.2-1.3) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl (0.16-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.008-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.113-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:arm64 (3.81-1) ... Setting up gpgconf (2.2.40-1.1) ... Setting up libio-socket-ssl-perl (2.081-2) ... Setting up gpg (2.2.40-1.1) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.55-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.68-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.16-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up lintian (2.116.3) ... Setting up sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 6692 Build-Time: 75 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 46 Job: wham-align_0.1.5-8 Lintian: pass Machine Architecture: arm64 Package: wham-align Package-Time: 155 Source-Version: 0.1.5-8 Space: 6692 Status: successful Version: 0.1.5-8 -------------------------------------------------------------------------------- Finished at 2023-05-23T20:12:14Z Build needed 00:02:35, 6692k disk space