sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | wtdbg2 2.5-3 (s390x) Fri, 07 Aug 2020 02:33:40 +0000 | +==============================================================================+ Package: wtdbg2 Version: 2.5-3 Source Version: 2.5-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-d304ef02-01bf-4eb4-9b19-f881ac80405c' with '<>' I: NOTICE: Log filtering will replace 'build/wtdbg2-2yji1c/resolver-tBrjRl' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-08-06-0802.29.pdiff [5353 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-08-06-1403.49.pdiff [35.7 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-08-06-2000.48.pdiff [12.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-08-06-2000.48.pdiff [12.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-08-06-0802.29.pdiff [3430 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-08-06-1403.49.pdiff [25.9 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-08-06-2000.48.pdiff [21.7 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-08-06-2000.48.pdiff [21.7 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main s390x Packages [8019 kB] Fetched 8325 kB in 2s (5206 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'wtdbg2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/wtdbg2.git Please use: git clone https://salsa.debian.org/med-team/wtdbg2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 251 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main wtdbg2 2.5-3 (dsc) [1903 B] Get:2 http://debian.oregonstate.edu/debian unstable/main wtdbg2 2.5-3 (tar) [237 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main wtdbg2 2.5-3 (diff) [12.3 kB] Fetched 251 kB in 0s (5694 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/wtdbg2-2yji1c/wtdbg2-2.5' with '<>' I: NOTICE: Log filtering will replace 'build/wtdbg2-2yji1c' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x Filtered Build-Depends: debhelper-compat (= 12), zlib1g-dev, libsimde-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [414 B] Get:5 copy:/<>/apt_archive ./ Packages [503 B] Fetched 1874 B in 0s (78.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils build-essential cpp-10-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-10-cross-base gcc-10-s390x-linux-gnu gcc-10-s390x-linux-gnu-base gcc-9-base:s390x gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-s390x-cross libgcc-9-dev:s390x libgcc-s1:s390x libgcc-s1-s390x-cross libglib2.0-0 libgomp1:s390x libgomp1-s390x-cross libicu67 libio-string-perl libitm1:s390x libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.30 libpipeline1 libsigsegv2 libsimde-dev libstdc++-10-dev libstdc++-10-dev-s390x-cross libstdc++-9-dev:s390x libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.30 po-debconf sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-10-multilib-s390x-linux-gnu gcc-10-multilib-s390x-linux-gnu manpages-dev flex bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:s390x libc-l10n:s390x locales:s390x glibc-doc manpages-dev:s390x gnupg git bzr libstdc++-10-doc libstdc++-9-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:s390x libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils build-essential cpp-10-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-s390x-linux-gnu g++-s390x-linux-gnu gcc-10-base:s390x gcc-10-cross-base gcc-10-s390x-linux-gnu gcc-10-s390x-linux-gnu-base gcc-9-base:s390x gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libasan6-s390x-cross libatomic1:s390x libatomic1-s390x-cross libc6:s390x libc6-dev libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:s390x libcrypt1:s390x libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-s390x-cross libgcc-9-dev:s390x libgcc-s1:s390x libgcc-s1-s390x-cross libglib2.0-0 libgomp1:s390x libgomp1-s390x-cross libicu67 libio-string-perl libitm1:s390x libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libperl5.30 libpipeline1 libsigsegv2 libsimde-dev libstdc++-10-dev libstdc++-10-dev-s390x-cross libstdc++-9-dev:s390x libstdc++6:s390x libstdc++6-s390x-cross libsub-override-perl libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db perl perl-modules-5.30 po-debconf sbuild-build-depends-main-dummy:s390x sensible-utils ucf zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 102 newly installed, 0 to remove and 0 not upgraded. Need to get 91.1 MB of archives. After this operation, 381 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36-2 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.30 all 5.30.3-4 [2806 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.30 amd64 5.30.3-4 [4019 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.30.3-4 [290 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main s390x gcc-10-base s390x 10.2.0-3 [198 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main s390x gcc-9-base s390x 9.3.0-16 [197 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-5 [262 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-5 [120 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-5 [67.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-3 [801 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.35-1 [1977 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-3 [2395 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.0-3 [1714 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.0-3 [8658 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.1.0-1 [1644 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-s390x-linux-gnu-base amd64 10.2.0-3cross2 [198 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-s390x-linux-gnu amd64 10.2.0-3cross2 [6648 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:10.1.0-1 [16.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.0-3cross2 [195 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.31-1cross2 [1254 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-s390x-cross all 10.2.0-3cross2 [24.7 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 10.2.0-3cross2 [90.5 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 10.2.0-3cross2 [24.9 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 10.2.0-3cross2 [7940 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-s390x-cross all 10.2.0-3cross2 [293 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 10.2.0-3cross2 [441 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 10.2.0-3cross2 [125 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-s390x-cross all 10.2.0-3cross2 [661 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-s390x-linux-gnu amd64 10.2.0-3cross2 [13.0 MB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:10.1.0-1 [1464 B] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 5.7.6-1cross2 [1228 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.31-1cross2 [1990 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-s390x-cross all 10.2.0-3cross2 [1676 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-s390x-linux-gnu amd64 10.2.0-3cross2 [7307 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:10.1.0-1 [1180 B] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-3 [8610 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5+b1 [710 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.8 [6636 B] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.2 [187 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.180-1+b1 [165 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.4-1 [1341 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.2 [1007 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-s1 s390x 10.2.0-3 [24.6 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt1 s390x 1:4.4.16-1 [89.0 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.31-3 [2471 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 9.3.0-16 [344 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 10.2.0-3 [8104 B] Get:91 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 5.7.10-1 [1141 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main s390x libcrypt-dev s390x 1:4.4.16-1 [107 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.31-3 [2018 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 10.2.0-3 [92.5 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 10.2.0-3 [25.3 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 10.2.0-3 [483 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 10.2.0-3 [125 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-9-dev s390x 9.3.0-16 [681 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libsimde-dev all 0.5.0-1 [149 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-9-dev s390x 9.3.0-16 [1664 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-2 [88.9 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-2 [189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 91.1 MB in 1s (112 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10440 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36-2_amd64.deb ... Unpacking bsdextrautils (2.36-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.30. Preparing to unpack .../005-perl-modules-5.30_5.30.3-4_all.deb ... Unpacking perl-modules-5.30 (5.30.3-4) ... 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Setting up bsdextrautils (2.36-2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-3) ... Setting up libmagic-mgc (1:5.38-5) ... Setting up libglib2.0-0:amd64 (2.64.4-1) ... No schema files found: doing nothing. Setting up libc6-s390x-cross (2.31-1cross2) ... Setting up libmagic1:amd64 (1:5.38-5) ... Setting up linux-libc-dev:s390x (5.7.10-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-5) ... Setting up gcc-10-base:s390x (10.2.0-3) ... Setting up autotools-dev (20180224.1) ... Setting up linux-libc-dev-s390x-cross (5.7.6-1cross2) ... Setting up cross-config (2.6.15-3.1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up gcc-10-cross-base (10.2.0-3cross2) ... Setting up libitm1-s390x-cross (10.2.0-3cross2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libc6-dev-s390x-cross (2.31-1cross2) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libperl5.30:amd64 (5.30.3-4) ... Setting up libc6-dev:amd64 (2.31-3) ... Setting up libelf1:amd64 (0.180-1+b1) ... Setting up libgomp1-s390x-cross (10.2.0-3cross2) ... Setting up libxml2:amd64 (2.9.10+dfsg-5+b1) ... Setting up gcc-10-s390x-linux-gnu-base:amd64 (10.2.0-3cross2) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up gcc-9-base:s390x (9.3.0-16) ... Setting up libstdc++-10-dev:amd64 (10.2.0-3) ... Setting up g++-10 (10.2.0-3) ... Setting up libtool (2.4.6-14) ... Setting up libatomic1-s390x-cross (10.2.0-3cross2) ... Setting up m4 (1.4.18-4) ... Setting up perl (5.30.3-4) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libgcc-s1-s390x-cross (10.2.0-3cross2) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-11.1) ... Setting up g++ (4:10.1.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-5) ... Setting up cpp-10-s390x-linux-gnu (10.2.0-3cross2) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.2-3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up cpp-s390x-linux-gnu (4:10.1.0-1) ... Setting up libstdc++6-s390x-cross (10.2.0-3cross2) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up libasan6-s390x-cross (10.2.0-3cross2) ... Setting up dpkg-dev (1.20.5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up build-essential (12.8) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libubsan1-s390x-cross (10.2.0-3cross2) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-10-dev-s390x-cross (10.2.0-3cross2) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libstdc++-10-dev-s390x-cross (10.2.0-3cross2) ... Setting up gcc-10-s390x-linux-gnu (10.2.0-3cross2) ... Setting up gcc-s390x-linux-gnu (4:10.1.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-10-s390x-linux-gnu (10.2.0-3cross2) ... Setting up g++-s390x-linux-gnu (4:10.1.0-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-s390x (12.8) ... Setting up libcrypt1:s390x (1:4.4.16-1) ... Setting up libgcc-s1:s390x (10.2.0-3) ... Setting up libc6:s390x (2.31-3) ... Setting up libcrypt-dev:s390x (1:4.4.16-1) ... Setting up libc6-dev:s390x (2.31-3) ... Setting up libstdc++6:s390x (10.2.0-3) ... Setting up libitm1:s390x (10.2.0-3) ... Setting up debhelper (13.2) ... Setting up zlib1g:s390x (1:1.2.11.dfsg-2) ... Setting up libgomp1:s390x (10.2.0-3) ... Setting up dh-autoreconf (19) ... Setting up libasan5:s390x (9.3.0-16) ... Setting up libatomic1:s390x (10.2.0-3) ... Setting up libubsan1:s390x (10.2.0-3) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-2) ... Setting up libgcc-9-dev:s390x (9.3.0-16) ... Setting up libstdc++-9-dev:s390x (9.3.0-16) ... Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.31-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-9-amd64 #1 SMP Debian 4.19.118-2+deb10u1 (2020-06-07) amd64 (x86_64) Toolchain package versions: binutils_2.35-1 dpkg-dev_1.20.5 g++-10_10.2.0-3 gcc-10_10.2.0-3 libc6-dev_2.31-3 libstdc++-10-dev_10.2.0-3 libstdc++-10-dev-s390x-cross_10.2.0-3cross2 libstdc++-9-dev_9.3.0-16 libstdc++6_10.2.0-3 libstdc++6-s390x-cross_10.2.0-3cross2 linux-libc-dev_5.7.10-1 Package versions: adduser_3.118 apt_2.1.8 autoconf_2.69-11.1 automake_1:1.16.2-3 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.47 bash_5.0-7 binutils_2.35-1 binutils-common_2.35-1 binutils-s390x-linux-gnu_2.35-1 binutils-x86-64-linux-gnu_2.35-1 bsdextrautils_2.36-2 bsdutils_1:2.36-2 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-3 cpp_4:10.1.0-1 cpp-10_10.2.0-3 cpp-10-s390x-linux-gnu_10.2.0-3cross2 cpp-8_8.4.0-4 cpp-s390x-linux-gnu_4:10.1.0-1 cross-config_2.6.15-3.1 crossbuild-essential-s390x_12.8 dash_0.5.10.2-7 debconf_1.5.74 debhelper_13.2 debian-archive-keyring_2019.1 debianutils_4.11 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13-5 e2fsprogs_1.45.6-1 fakeroot_1.24-1 fdisk_2.36-2 file_1:5.38-5 findutils_4.7.0-1 g++_4:10.1.0-1 g++-10_10.2.0-3 g++-10-s390x-linux-gnu_10.2.0-3cross2 g++-s390x-linux-gnu_4:10.1.0-1 gcc_4:10.1.0-1 gcc-10_10.2.0-3 gcc-10-base_10.2.0-3 gcc-10-cross-base_10.2.0-3cross2 gcc-10-s390x-linux-gnu_10.2.0-3cross2 gcc-10-s390x-linux-gnu-base_10.2.0-3cross2 gcc-8-base_8.4.0-4 gcc-9-base_9.3.0-16 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libdebian-dpkgcross-perl_2.6.15-3.1 libdpkg-perl_1.20.5 libelf1_0.180-1+b1 libext2fs2_1.45.6-1 libfakeroot_1.24-1 libfdisk1_2.36-2 libffi6_3.2.1-9 libffi7_3.3-4 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.9.0-1 libfile-which-perl_1.23-1 libgcc-10-dev_10.2.0-3 libgcc-10-dev-s390x-cross_10.2.0-3cross2 libgcc-9-dev_9.3.0-16 libgcc-s1_10.2.0-3 libgcc-s1-s390x-cross_10.2.0-3cross2 libgcrypt20_1.8.6-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.64.4-1 libgmp10_2:6.2.0+dfsg-6 libgnutls30_3.6.14-2+b1 libgomp1_10.2.0-3 libgomp1-s390x-cross_10.2.0-3cross2 libgpg-error0_1.38-2 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.6-2 libicu67_67.1-3 libidn2-0_2.3.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libisl22_0.22.1-1 libitm1_10.2.0-3 libitm1-s390x-cross_10.2.0-3cross2 liblocale-gettext-perl_1.07-4 liblsan0_10.2.0-3 liblz4-1_1.9.2-2 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.38-5 libmagic1_1:5.38-5 libmount1_2.36-2 libmpc3_1.2.0~rc1-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-4 libncursesw6_6.2-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.6-2 libp11-kit0_0.23.20-1 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.34-7 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.30_5.30.3-4 libpipeline1_1.5.2-2 libquadmath0_10.2.0-3 libseccomp2_2.4.3-1+b1 libselinux1_3.1-2 libsemanage-common_3.1-1 libsemanage1_3.1-1 libsepol1_3.1-1 libsigsegv2_2.12-2 libsimde-dev_0.5.0-1 libsmartcols1_2.36-2 libss2_1.45.6-1 libstdc++-10-dev_10.2.0-3 libstdc++-10-dev-s390x-cross_10.2.0-3cross2 libstdc++-9-dev_9.3.0-16 libstdc++6_10.2.0-3 libstdc++6-s390x-cross_10.2.0-3cross2 libsub-override-perl_0.09-2 libsystemd0_246-2 libtasn1-6_4.16.0-2 libtinfo6_6.2-1 libtool_2.4.6-14 libtsan0_10.2.0-3 libubsan1_10.2.0-3 libubsan1-s390x-cross_10.2.0-3cross2 libuchardet0_0.0.7-1 libudev1_246-2 libunistring2_0.9.10-4 libuuid1_2.36-2 libxml-libxml-perl_2.0134+dfsg-2 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 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Binary: wtdbg2 Architecture: any Version: 2.5-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/ruanjue/wtdbg2 Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/wtdbg2 Vcs-Git: https://salsa.debian.org/med-team/wtdbg2.git Build-Depends: debhelper-compat (= 12), zlib1g-dev, libsimde-dev Package-List: wtdbg2 deb science optional arch=any Checksums-Sha1: 36e07424e7a08b2571ea8580e50e736c90458335 236627 wtdbg2_2.5.orig.tar.gz 93be60aa21a0a9ab8309ebe51d6fbd937e2eebc0 12332 wtdbg2_2.5-3.debian.tar.xz Checksums-Sha256: a2ffc8503d29f491a9a38ef63230d5b3c96db78377b5d25c91df511d0df06413 236627 wtdbg2_2.5.orig.tar.gz 0d690ed005d9f96383cf9d96bd09f1d492268efd2bb15255d0f979eb3d78b1c7 12332 wtdbg2_2.5-3.debian.tar.xz Files: 0368caed7480192c42b1a4ffa1ddbb7c 236627 wtdbg2_2.5.orig.tar.gz 88c6dd069ed6a4cc7b7b1f638e7008ff 12332 wtdbg2_2.5-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- 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using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./wtdbg2_2.5-3.dsc dpkg-source: info: extracting wtdbg2 in /<> dpkg-source: info: unpacking wtdbg2_2.5.orig.tar.gz dpkg-source: info: unpacking wtdbg2_2.5-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_install.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying simde dpkg-source: info: applying scripts-tweak Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-d304ef02-01bf-4eb4-9b19-f881ac80405c SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package wtdbg2 dpkg-buildpackage: info: source version 2.5-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -f *.o *.gcda *.gcno *.gcov gmon.out kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=s390x-linux-gnu-pkg-config CXX=s390x-linux-gnu-g\+\+ CC=s390x-linux-gnu-gcc make[2]: Entering directory '/<>' s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o kbm2 kbm.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from tripoa.h:23, from wtpoa.h:23, from kbmpoa.h:24, from kbm.c:21: poacns.h:34:9: note: ‘#pragma message: ** poacns.h hasn't been tested in BIG_ENDIAN ** ’ 34 | #pragma message(" ** " __FILE__ " hasn't been tested in BIG_ENDIAN **\n") | ^~~~~~~ In file included from list.h:28, from kbm.h:23, from kbm.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj_file’: mem_share.h:1301:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1301 | fread(size, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1302:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1302 | fread(mem_type, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1303:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1303 | fread(cnt, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:1304:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1304 | fread(aux_data, sizeof(size_t), 1, file); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘mem_load_obj’: mem_share.h:919:5: warning: this statement may fall through [-Wimplicit-fallthrough=] 919 | for(m=0;marray = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘init_ctgcns.constprop’: /usr/s390x-linux-gnu/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘renew_pog’ at poacns.h:162:35, inlined from ‘beg_pog_core.constprop’ at poacns.h:513:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: hashset.h: In function ‘beg_pog_core.constprop’: /usr/s390x-linux-gnu/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘init_kbm’ at kbm.h:317:44: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘init_kbm’: /usr/s390x-linux-gnu/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from kbm.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_maln_func’ at kbm.c:143:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from kbm.c:20: kbm.h: In function ‘thread_maln_func’: /usr/s390x-linux-gnu/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg2 wtdbg.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from tripoa.h:23, from wtpoa.h:23, from kbmpoa.h:24, from wtdbg.h:24, from wtdbg.c:20: poacns.h:34:9: note: ‘#pragma message: ** poacns.h hasn't been tested in BIG_ENDIAN ** ’ 34 | #pragma message(" ** " __FILE__ " hasn't been tested in BIG_ENDIAN **\n") | ^~~~~~~ In file included from wtdbg.c:20: wtdbg.h: In function ‘estimate_edge_length’: wtdbg.h:1926:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation] 1926 | for(i=b,tot=0;iarray = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘init_kbm’: /usr/s390x-linux-gnu/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_kbm’ at kbm.h:311:17: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: hashset.h: In function ‘init_kbm’: /usr/s390x-linux-gnu/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmphash’, inlined from ‘init_kbmphash’ at kbm.h:146:1, inlined from ‘reset_kbmdp’ at kbm.h:1291:15: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ kbm.h:146:1: note: in expansion of macro ‘define_hashset’ 146 | define_hashset(kbmphash, kbm_path_t, kbmpath_hashcode, kbmpath_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_kbmdp’: /usr/s390x-linux-gnu/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_subnodehash’, inlined from ‘init_subnodehash’ at wtdbg-graph.h:173:1, inlined from ‘thread_mrep_func’ at wtdbg-graph.h:391:9: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ wtdbg-graph.h:173:1: note: in expansion of macro ‘define_hashset’ 173 | define_hashset(subnodehash, subnode_t, subnode_hashcode, subnode_hashequals); | ^~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: wtdbg-graph.h: In function ‘thread_mrep_func’: /usr/s390x-linux-gnu/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:348:19: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/s390x-linux-gnu/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘reset_index_kbm’ at kbm.h:354:20: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘reset_index_kbm’: /usr/s390x-linux-gnu/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from kbm.h:24, from wtdbg.h:23, from wtdbg.c:20: In function ‘init2_kbmhash’, inlined from ‘init_kbmhash’ at kbm.h:99:1, inlined from ‘clear_kbm’ at kbm.h:382:19, inlined from ‘thread_mdbg_func’ at wtdbg.h:703:3: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ kbm.h:99:1: note: in expansion of macro ‘define_hashtable’ 99 | define_hashtable(kbmhash, kbm_kmer_t, KBM_KMERCODE, KBM_KMEREQUALS, u8i, ITSELF, KBM_KEYEQUALS, kbm_kmer_t*, ITSELF); | ^~~~~~~~~~~~~~~~ In file included from list.h:23, from kbm.h:23, from wtdbg.h:23, from wtdbg.c:20: kbm.h: In function ‘thread_mdbg_func’: /usr/s390x-linux-gnu/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtdbg-cns wtdbg-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from list.h:28, from dna.h:27, from kswx.h:24, from wtdbg-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtdbg-cns.c:23: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ In file included from dna.h:29, from kswx.h:24, from wtdbg-cns.c:20: In function ‘init2_fbgkmerh’, inlined from ‘init_fbgkmerh’ at dbgcns.h:74:1, inlined from ‘init_cns.constprop’ at dbgcns.h:330:20: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:426:86: note: in expansion of macro ‘define_hashtable’ 426 | #define define_hashset(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro) define_hashtable(hash_type, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type, hash_code_macro, hash_equal_macro, hash_ele_type*, ITSELF) | ^~~~~~~~~~~~~~~~ dbgcns.h:74:1: note: in expansion of macro ‘define_hashset’ 74 | define_hashset(fbgkmerh, fbg_kmer_t, fbgkmer_hashcode, fbgkmer_equals); | ^~~~~~~~~~~~~~ In file included from dna.h:24, from kswx.h:24, from wtdbg-cns.c:20: dbgcns.h: In function ‘init_cns.constprop’: /usr/s390x-linux-gnu/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o wtpoa-cns wtpoa-cns.c ksw.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: poacns.h:34:9: note: ‘#pragma message: ** poacns.h hasn't been tested in BIG_ENDIAN ** ’ 34 | #pragma message(" ** " __FILE__ " hasn't been tested in BIG_ENDIAN **\n") | ^~~~~~~ wtpoa-cns.c: In function ‘main’: wtpoa-cns.c:110:24: warning: this statement may fall through [-Wimplicit-fallthrough=] 110 | case 'p': print_lay = 1; | ~~~~~~~~~~^~~ wtpoa-cns.c:111:4: note: here 111 | case 'd': push_cplist(dbfs, optarg); break; | ^~~~ In file included from bit2vec.h:27, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h: In function ‘get_linux_proc_info’: mem_share.h:560:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 560 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:568:2: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 568 | fscanf(fp, "%lu%lu", &tmp, &tmp2); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from wtpoa.h:25, from wtpoa-cns.c:20: filereader.h: In function ‘file_src_thread_func’: filereader.h:157:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 157 | if(_file == NULL){ | ^ filereader.h:162:5: note: here 162 | case FILEREADER_ATTR_PROC: | ^~~~ filereader.h:163:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 163 | if(_file == NULL){ | ^ filereader.h:168:5: note: here 168 | case FILEREADER_ATTR_USER: | ^~~~ filereader.h:169:8: warning: this statement may fall through [-Wimplicit-fallthrough=] 169 | if(_file == NULL){ | ^ filereader.h:174:5: note: here 174 | default: | ^~~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15, inlined from ‘init_tripog’ at tripoa.h:52:13, inlined from ‘init_ctgcns’ at wtpoa.h:273:12: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_ctgcns’: /usr/s390x-linux-gnu/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from dna.h:29, from poacns.h:24, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: In function ‘init2_cuhash’, inlined from ‘init_cuhash’ at hashset.h:579:1, inlined from ‘init_seqbank’ at dna.h:1160:15: hashset.h:95:21: warning: argument 1 value ‘10097331658659645683’ exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 95 | set->array = calloc(set->size, set->e_size); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ hashset.h:411:2: note: in expansion of macro ‘init_hashset_macro’ 411 | init_hashset_macro(hash_type, hash_ele_type); \ | ^~~~~~~~~~~~~~~~~~ hashset.h:579:1: note: in expansion of macro ‘define_hashtable’ 579 | define_hashtable(cuhash, cuhash_t, cuhash_code, cuhash_equals, char*, __string_hashcode, cuhash_key_equals, u4i, KV_HASH_GET_VAL); | ^~~~~~~~~~~~~~~~ In file included from bit2vec.h:26, from poacns.h:23, from tripoa.h:23, from wtpoa.h:23, from wtpoa-cns.c:20: hashset.h: In function ‘init_seqbank’: /usr/s390x-linux-gnu/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ s390x-linux-gnu-gcc -Wl,-z,relro -Wl,-z,now -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -g3 -W -Wall -Wno-unused-but-set-variable -O4 -DVERSION="2.5" -DRELEASE="20190621" -D_FILE_OFFSET_BITS=64 -D_GNU_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -o pgzf pgzf.c -lm -lrt -lpthread -lz -Wl,-z,relro -Wl,-z,now In file included from pgzf.h:24, from pgzf.c:20: mem_share.h: In function ‘get_linux_sys_info’: mem_share.h:514:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 514 | fscanf(fp, "%llu", memtotal); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:517:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 517 | fscanf(fp, "%llu", &freed); | ^~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:519:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 519 | fscanf(fp, "%llu", &buffered); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mem_share.h:521:5: warning: ignoring return value of ‘fscanf’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 521 | fscanf(fp, "%llu", &cached); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp dh_testroot -a dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' make BIN=debian/wtdbg2/usr/bin install make[2]: Entering directory '/<>' mkdir -p debian/wtdbg2/usr/bin && cp -fvu kbm2 wtdbg2 wtdbg-cns wtpoa-cns pgzf debian/wtdbg2/usr/bin 'kbm2' -> 'debian/wtdbg2/usr/bin/kbm2' 'wtdbg2' -> 'debian/wtdbg2/usr/bin/wtdbg2' 'wtdbg-cns' -> 'debian/wtdbg2/usr/bin/wtdbg-cns' 'wtpoa-cns' -> 'debian/wtdbg2/usr/bin/wtpoa-cns' 'pgzf' -> 'debian/wtdbg2/usr/bin/pgzf' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'wtdbg2' in '../wtdbg2_2.5-3_s390x.deb'. dpkg-deb: building package 'wtdbg2-dbgsym' in '../wtdbg2-dbgsym_2.5-3_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../wtdbg2_2.5-3_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-08-07T02:35:14Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ wtdbg2_2.5-3_s390x.changes: --------------------------- Format: 1.8 Date: Sun, 19 Apr 2020 10:56:49 +0200 Source: wtdbg2 Binary: wtdbg2 wtdbg2-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 2.5-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: wtdbg2 - de novo sequence assembler for long noisy reads Closes: 958091 Changes: wtdbg2 (2.5-3) unstable; urgency=medium . * Team upload. * Build on all architectures and don't violate the i386/amd64 baselines Closes: #958091 * Install the scripts to /usr/share/wtdbg2/ and add their dependencies under "Suggests" * Install the README.md Checksums-Sha1: 5d97a857d6f23920113cedf0109d9868251c1741 1737532 wtdbg2-dbgsym_2.5-3_s390x.deb a807c61cd9b23273c422fa2aa1c1da2ae0ef4acd 4512 wtdbg2_2.5-3_s390x.buildinfo 216be1d9fddedde877ac4e0045e68fec8837ed33 343424 wtdbg2_2.5-3_s390x.deb Checksums-Sha256: 46505a92abd154da4f774a06bfab95a32c92bdfc00671ca4d589bd781df66291 1737532 wtdbg2-dbgsym_2.5-3_s390x.deb 121d42b403eacc7b05bdcb5b02a5fd9fe50c3d17e25ded79fcae62a547d02687 4512 wtdbg2_2.5-3_s390x.buildinfo ad42e5ee3603214d65bb2ad774fdfb98789622e284850fbb83fb5f56a543cf64 343424 wtdbg2_2.5-3_s390x.deb Files: 3bb1e0afb8fcd55f847f1be4586c52b3 1737532 debug optional wtdbg2-dbgsym_2.5-3_s390x.deb 3f2e867d5708aa01808ba5a95238a097 4512 science optional wtdbg2_2.5-3_s390x.buildinfo 5fd14b40a9e385da47b703818fcb29be 343424 science optional wtdbg2_2.5-3_s390x.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: wtdbg2 Binary: wtdbg2 wtdbg2-dbgsym Architecture: s390x Version: 2.5-3 Checksums-Md5: 3bb1e0afb8fcd55f847f1be4586c52b3 1737532 wtdbg2-dbgsym_2.5-3_s390x.deb 5fd14b40a9e385da47b703818fcb29be 343424 wtdbg2_2.5-3_s390x.deb Checksums-Sha1: 5d97a857d6f23920113cedf0109d9868251c1741 1737532 wtdbg2-dbgsym_2.5-3_s390x.deb 216be1d9fddedde877ac4e0045e68fec8837ed33 343424 wtdbg2_2.5-3_s390x.deb Checksums-Sha256: 46505a92abd154da4f774a06bfab95a32c92bdfc00671ca4d589bd781df66291 1737532 wtdbg2-dbgsym_2.5-3_s390x.deb ad42e5ee3603214d65bb2ad774fdfb98789622e284850fbb83fb5f56a543cf64 343424 wtdbg2_2.5-3_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Fri, 07 Aug 2020 02:35:14 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.2-3), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.47), bash (= 5.0-7), binutils (= 2.35-1), binutils-common (= 2.35-1), binutils-x86-64-linux-gnu (= 2.35-1), bsdextrautils (= 2.36-2), bsdutils (= 1:2.36-2), build-essential (= 12.8), bzip2 (= 1.0.8-4), coreutils (= 8.32-3), cpp (= 4:10.1.0-1), cpp-10 (= 10.2.0-3), dash (= 0.5.10.2-7), debconf (= 1.5.74), debhelper (= 13.2), debianutils (= 4.11), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13-5), file (= 1:5.38-5), findutils (= 4.7.0-1), g++ (= 4:10.1.0-1), g++-10 (= 10.2.0-3), gcc (= 4:10.1.0-1), gcc-10 (= 10.2.0-3), gcc-10-base (= 10.2.0-3), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.4-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.58), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.0-3), libatomic1 (= 10.2.0-3), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3), libaudit1 (= 1:2.8.5-3+b1), libbinutils (= 2.35-1), libblkid1 (= 2.36-2), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-3), libc-dev-bin (= 2.31-3), libc6 (= 2.31-3), libc6-dev (= 2.31-3), libcap-ng0 (= 0.7.9-2.2), libcc1-0 (= 10.2.0-3), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.16-1), libcrypt1 (= 1:4.4.16-1), libctf-nobfd0 (= 2.35-1), libctf0 (= 2.35-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.253), libdebhelper-perl (= 13.2), libdpkg-perl (= 1.20.5), libelf1 (= 0.180-1+b1), libffi7 (= 3.3-4), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.0-3), libgcc-s1 (= 10.2.0-3), libgcrypt20 (= 1.8.6-2), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.64.4-1), libgmp10 (= 2:6.2.0+dfsg-6), libgomp1 (= 10.2.0-3), libgpg-error0 (= 1.38-2), libicu67 (= 67.1-3), libisl22 (= 0.22.1-1), libitm1 (= 10.2.0-3), liblsan0 (= 10.2.0-3), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.38-5), libmagic1 (= 1:5.38-5), libmount1 (= 2.36-2), libmpc3 (= 1.2.0~rc1-1), libmpfr6 (= 4.1.0-3), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.34-7), libpcre3 (= 2:8.39-13), libperl5.30 (= 5.30.3-4), libpipeline1 (= 1.5.2-2), libquadmath0 (= 10.2.0-3), libseccomp2 (= 2.4.3-1+b1), libselinux1 (= 3.1-2), libsigsegv2 (= 2.12-2), libsimde-dev (= 0.5.0-1), libsmartcols1 (= 2.36-2), libstdc++-10-dev (= 10.2.0-3), libstdc++6 (= 10.2.0-3), libsub-override-perl (= 0.09-2), libsystemd0 (= 246-2), libtinfo6 (= 6.2-1), libtool (= 2.4.6-14), libtsan0 (= 10.2.0-3), libubsan1 (= 10.2.0-3), libuchardet0 (= 0.0.7-1), libudev1 (= 246-2), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36-2), libxml2 (= 2.9.10+dfsg-5+b1), libzstd1 (= 1.4.5+dfsg-3), linux-libc-dev (= 5.7.10-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2-1), ncurses-bin (= 6.2-1), patch (= 2.7.6-6), perl (= 5.30.3-4), perl-base (= 5.30.3-4), perl-modules-5.30 (= 5.30.3-4), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-3), tar (= 1.30+dfsg-7), util-linux (= 2.36-2), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1587286609" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ wtdbg2-dbgsym_2.5-3_s390x.deb ----------------------------- new Debian package, version 2.0. size 1737532 bytes: control archive=796 bytes. 527 bytes, 12 lines control 612 bytes, 6 lines md5sums Package: wtdbg2-dbgsym Source: wtdbg2 Version: 2.5-3 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1774 Depends: wtdbg2 (= 2.5-3) Section: debug Priority: optional Description: debug symbols for wtdbg2 Build-Ids: 0ca65edf984a7a23d6b72dbd62b0771168366231 31f7b95e1fdf1efe6fdbaf26def0a8d3c48fbcf0 58f44a70f15dff70129a39057af05a1de72122ff 80f0906118dbf0fc7e850eaf47d970b374687d2c ab0a445a31ccd758a4b9e3e8f3ae1d2cb592f014 drwxr-xr-x root/root 0 2020-04-19 08:56 ./ drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/ drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/lib/ drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/lib/debug/.build-id/0c/ -rw-r--r-- root/root 632736 2020-04-19 08:56 ./usr/lib/debug/.build-id/0c/a65edf984a7a23d6b72dbd62b0771168366231.debug drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/lib/debug/.build-id/31/ -rw-r--r-- root/root 448256 2020-04-19 08:56 ./usr/lib/debug/.build-id/31/f7b95e1fdf1efe6fdbaf26def0a8d3c48fbcf0.debug drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/lib/debug/.build-id/58/ -rw-r--r-- root/root 290360 2020-04-19 08:56 ./usr/lib/debug/.build-id/58/f44a70f15dff70129a39057af05a1de72122ff.debug drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/lib/debug/.build-id/80/ -rw-r--r-- root/root 258584 2020-04-19 08:56 ./usr/lib/debug/.build-id/80/f0906118dbf0fc7e850eaf47d970b374687d2c.debug drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/lib/debug/.build-id/ab/ -rw-r--r-- root/root 56128 2020-04-19 08:56 ./usr/lib/debug/.build-id/ab/0a445a31ccd758a4b9e3e8f3ae1d2cb592f014.debug drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/lib/debug/.dwz/s390x-linux-gnu/ -rw-r--r-- root/root 112384 2020-04-19 08:56 ./usr/lib/debug/.dwz/s390x-linux-gnu/wtdbg2.debug drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/share/ drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-04-19 08:56 ./usr/share/doc/wtdbg2-dbgsym -> wtdbg2 wtdbg2_2.5-3_s390x.deb ---------------------- new Debian package, version 2.0. size 343424 bytes: control archive=2064 bytes. 1210 bytes, 24 lines control 2485 bytes, 39 lines md5sums Package: wtdbg2 Version: 2.5-3 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 1301 Depends: libc6 (>= 2.29), zlib1g (>= 1:1.2.0) Suggests: perl:any, minimap2, samtools, mummer Section: science Priority: optional Homepage: https://github.com/ruanjue/wtdbg2 Description: de novo sequence assembler for long noisy reads Wtdbg2 is a de novo sequence assembler for long noisy reads produced by PacBio or Oxford Nanopore Technologies (ONT). It assembles raw reads without error correction and then builds the consensus from intermediate assembly output. Wtdbg2 is able to assemble the human and even the 32Gb Axolotl genome at a speed tens of times faster than CANU and FALCON while producing contigs of comparable base accuracy. . During assembly, wtdbg2 chops reads into 1024bp segments, merges similar segments into a vertex and connects vertices based on the segment adjacency on reads. The resulting graph is called fuzzy Bruijn graph (FBG). It is akin to De Bruijn graph but permits mismatches/gaps and keeps read paths when collapsing k-mers. The use of FBG distinguishes wtdbg2 from the majority of long-read assemblers. drwxr-xr-x root/root 0 2020-04-19 08:56 ./ drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/ drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/bin/ -rwxr-xr-x root/root 342264 2020-04-19 08:56 ./usr/bin/kbm2 -rwxr-xr-x root/root 38984 2020-04-19 08:56 ./usr/bin/pgzf -rwxr-xr-x root/root 174248 2020-04-19 08:56 ./usr/bin/wtdbg-cns -rwxr-xr-x root/root 496344 2020-04-19 08:56 ./usr/bin/wtdbg2 -rwxr-xr-x root/root 207016 2020-04-19 08:56 ./usr/bin/wtpoa-cns drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/share/ drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/share/doc/wtdbg2/ -rw-r--r-- root/root 3375 2019-09-13 07:40 ./usr/share/doc/wtdbg2/README.md.gz -rw-r--r-- root/root 370 2020-04-19 08:56 ./usr/share/doc/wtdbg2/changelog.Debian.gz -rw-r--r-- root/root 2108 2020-04-18 17:52 ./usr/share/doc/wtdbg2/copyright drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/share/man/ drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/share/man/man1/ -rw-r--r-- root/root 1678 2020-04-19 08:56 ./usr/share/man/man1/kbm2.1.gz -rw-r--r-- root/root 751 2020-04-19 08:56 ./usr/share/man/man1/pgzf.1.gz -rw-r--r-- root/root 931 2020-04-19 08:56 ./usr/share/man/man1/wtdbg-cns.1.gz -rw-r--r-- root/root 4743 2020-04-19 08:56 ./usr/share/man/man1/wtdbg2.1.gz -rw-r--r-- root/root 1529 2020-04-19 08:56 ./usr/share/man/man1/wtpoa-cns.1.gz drwxr-xr-x root/root 0 2020-04-19 08:56 ./usr/share/wtdbg2/ -rwxr-xr-x root/root 289 2019-09-13 07:40 ./usr/share/wtdbg2/best_kbm_hit.pl -rwxr-xr-x root/root 318 2019-09-13 07:40 ./usr/share/wtdbg2/best_minimap_hit.pl -rwxr-xr-x root/root 2174 2019-09-13 07:40 ./usr/share/wtdbg2/best_sam_hits4longreads.pl -rwxr-xr-x root/root 1413 2019-09-13 07:40 ./usr/share/wtdbg2/dbm_index_dot.pl -rwxr-xr-x root/root 680 2019-09-13 07:40 ./usr/share/wtdbg2/dbm_index_fa.pl -rwxr-xr-x root/root 1230 2019-09-13 07:40 ./usr/share/wtdbg2/dbm_read_dot.pl -rwxr-xr-x root/root 2452 2019-09-13 07:40 ./usr/share/wtdbg2/dbm_read_fa.pl -rwxr-xr-x root/root 407 2019-09-13 07:40 ./usr/share/wtdbg2/fa2fq.pl -rwxr-xr-x root/root 238 2019-09-13 07:40 ./usr/share/wtdbg2/fa2tab.pl -rwxr-xr-x root/root 206 2019-09-13 07:40 ./usr/share/wtdbg2/first_n_bases.pl -rwxr-xr-x root/root 180 2019-09-13 07:40 ./usr/share/wtdbg2/first_n_seqs.pl -rwxr-xr-x root/root 144 2019-09-13 07:40 ./usr/share/wtdbg2/fq2fa.pl -rwxr-xr-x root/root 1104 2019-09-13 07:40 ./usr/share/wtdbg2/hlcolor -rwxr-xr-x root/root 743 2019-09-13 07:40 ./usr/share/wtdbg2/longest_pacbio_subreads.pl -rwxr-xr-x root/root 1019 2019-09-13 07:40 ./usr/share/wtdbg2/mmpoa.pl -rwxr-xr-x root/root 415 2020-04-19 08:56 ./usr/share/wtdbg2/mum_assess.sh -rwxr-xr-x root/root 505 2019-09-13 07:40 ./usr/share/wtdbg2/num_n50.pl -rwxr-xr-x root/root 1024 2019-09-13 07:40 ./usr/share/wtdbg2/rename_fa.pl -rwxr-xr-x root/root 933 2019-09-13 07:40 ./usr/share/wtdbg2/rename_fq.pl -rwxr-xr-x root/root 371 2019-09-13 07:40 ./usr/share/wtdbg2/rev_seq.pl -rwxr-xr-x root/root 4729 2019-09-13 07:40 ./usr/share/wtdbg2/runit.pl -rwxr-xr-x root/root 2871 2019-09-13 07:40 ./usr/share/wtdbg2/sam2dbgcns.pl -rwxr-xr-x root/root 932 2019-09-13 07:40 ./usr/share/wtdbg2/seq_n50.pl -rwxr-xr-x root/root 650 2019-09-13 07:40 ./usr/share/wtdbg2/split_seqs_2.pl -rwxr-xr-x root/root 342 2019-09-13 07:40 ./usr/share/wtdbg2/split_seqs_3.pl -rwxr-xr-x root/root 1013 2019-09-13 07:40 ./usr/share/wtdbg2/wtdbg-dot2gfa.pl lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [544 B] Get:5 copy:/<>/apt_archive ./ Packages [632 B] Fetched 2139 B in 0s (90.0 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl libmetrics-any-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtest-metrics-any-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip patchutils readline-common t1utils Suggested packages: libxml-parser-perl libdata-dump-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl libmetrics-any-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libstruct-dumb-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtest-metrics-any-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxml-writer-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip patchutils readline-common sbuild-build-depends-lintian-dummy:s390x t1utils 0 upgraded, 92 newly installed, 0 to remove and 0 not upgraded. Need to get 7690 kB of archives. After this operation, 21.8 MB of additional disk space will be used. 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kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004000-1 [59.4 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1 [173 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.38-1 [21.7 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b2 [12.0 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1 [13.5 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:75 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http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.010002-1 [338 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b1 [20.2 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-writer-perl all 0.625-1 [29.7 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1 [35.6 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.21-7 [87.8 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.87.0 [1309 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7690 kB in 0s (33.9 MB/s) Selecting previously unselected package readline-common. (Reading database ... 21001 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.3-7.1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../05-libsqlite3-0_3.32.3-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.32.3-1) ... Selecting previously unselected package gpg. 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Setting up libhtml-parser-perl (3.72-5) ... Setting up gpgconf (2.2.20-1) ... Setting up gpg (2.2.20-1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libiterator-perl (0.03+ds1-1) ... Setting up libiterator-util-perl (0.02+ds1-1) ... Setting up libparams-classify-perl (0.015-1+b2) ... Setting up libio-async-loop-epoll-perl (0.21-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libpackage-stash-perl (0.38-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004000-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.87.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 14420 Build-Time: 66 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 18 Job: wtdbg2_2.5-3 Lintian: pass Machine Architecture: amd64 Package: wtdbg2 Package-Time: 94 Source-Version: 2.5-3 Space: 14420 Status: successful Version: 2.5-3 -------------------------------------------------------------------------------- Finished at 2020-08-07T02:35:14Z Build needed 00:01:34, 14420k disk space