sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | yaha 0.1.83-3 (armhf) Tue, 15 Oct 2024 05:05:14 +0000 | +==============================================================================+ Package: yaha Version: 0.1.83-3 Source Version: 0.1.83-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-2de0de2d-377b-4e69-99f3-6a3d18c70c96' with '<>' I: NOTICE: Log filtering will replace 'build/yaha-96nVzv/resolver-FaplJv' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [202 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-10-15-0300.55-F-2024-10-15-0300.55.pdiff [19.0 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-10-15-0300.55-F-2024-10-15-0300.55.pdiff [62.1 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-10-15-0300.55-F-2024-10-15-0300.55.pdiff [19.0 kB] Get:6 http://localhost:3142/debian sid/main armhf Packages [9552 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-10-15-0300.55-F-2024-10-15-0300.55.pdiff [62.1 kB] Fetched 9963 kB in 2s (4828 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'yaha' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/yaha.git Please use: git clone https://salsa.debian.org/med-team/yaha.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 104 MB of source archives. Get:1 http://localhost:3142/debian sid/main yaha 0.1.83-3 (dsc) [1941 B] Get:2 http://localhost:3142/debian sid/main yaha 0.1.83-3 (tar) [104 MB] Get:3 http://localhost:3142/debian sid/main yaha 0.1.83-3 (diff) [5124 B] Fetched 104 MB in 1s (203 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/yaha-96nVzv/yaha-0.1.83' with '<>' I: NOTICE: Log filtering will replace 'build/yaha-96nVzv' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [714 B] Get:5 copy:/<>/apt_archive ./ Packages [757 B] Fetched 2080 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following packages were automatically installed and are no longer required: login mount tzdata Use 'apt autoremove' to remove them. The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-14-arm-linux-gnueabihf cpp-arm-linux-gnueabihf crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-14-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf-base gcc-14-base:armhf gcc-14-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev:armhf libgcc-14-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libicu72 libmagic-mgc libmagic1t64 libpipeline1 libstdc++-14-dev:armhf libstdc++-14-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml2 linux-libc-dev-armhf-cross m4 man-db po-debconf sensible-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf libnss-nisplus:armhf manpages-dev:armhf libstdc++-14-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-14-arm-linux-gnueabihf cpp-arm-linux-gnueabihf crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-14-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf gcc-14-arm-linux-gnueabihf-base gcc-14-base:armhf gcc-14-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libelf1t64 libfakeroot libfile-stripnondeterminism-perl libgcc-14-dev:armhf libgcc-14-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libicu72 libmagic-mgc libmagic1t64 libpipeline1 libstdc++-14-dev:armhf libstdc++-14-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml2 linux-libc-dev-armhf-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils 0 upgraded, 66 newly installed, 0 to remove and 0 not upgraded. Need to get 87.9 MB of archives. After this operation, 338 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B] Get:2 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:3 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-3 [314 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic1t64 amd64 1:5.45-3 [105 kB] Get:5 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-3 [42.9 kB] Get:6 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.22.5-2 [200 kB] Get:7 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:8 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-5 [1181 kB] Get:9 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.40.2-9 [97.2 kB] Get:10 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:11 http://localhost:3142/debian sid/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:12 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:13 http://localhost:3142/debian sid/main amd64 autoconf all 2.72-3 [493 kB] Get:14 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:15 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:16 http://localhost:3142/debian sid/main amd64 autopoint all 0.22.5-2 [723 kB] Get:17 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabihf amd64 2.43.1-5 [3305 kB] Get:18 http://localhost:3142/debian sid/main amd64 gcc-14-arm-linux-gnueabihf-base amd64 14.2.0-6cross1 [46.9 kB] Get:19 http://localhost:3142/debian sid/main amd64 cpp-14-arm-linux-gnueabihf amd64 14.2.0-6cross1 [10.4 MB] Get:20 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabihf amd64 4:14.2.0-1 [4856 B] Get:21 http://localhost:3142/debian sid/main amd64 gcc-14-cross-base all 14.2.0-6cross1 [42.2 kB] Get:22 http://localhost:3142/debian sid/main amd64 libc6-armhf-cross all 2.40-3cross1 [895 kB] Get:23 http://localhost:3142/debian sid/main amd64 libgcc-s1-armhf-cross all 14.2.0-6cross1 [36.9 kB] Get:24 http://localhost:3142/debian sid/main amd64 libgomp1-armhf-cross all 14.2.0-6cross1 [109 kB] Get:25 http://localhost:3142/debian sid/main amd64 libatomic1-armhf-cross all 14.2.0-6cross1 [6808 B] Get:26 http://localhost:3142/debian sid/main amd64 libasan8-armhf-cross all 14.2.0-6cross1 [2570 kB] Get:27 http://localhost:3142/debian sid/main amd64 libstdc++6-armhf-cross all 14.2.0-6cross1 [559 kB] Get:28 http://localhost:3142/debian sid/main amd64 libubsan1-armhf-cross all 14.2.0-6cross1 [1037 kB] Get:29 http://localhost:3142/debian sid/main amd64 libgcc-14-dev-armhf-cross all 14.2.0-6cross1 [766 kB] Get:30 http://localhost:3142/debian sid/main amd64 gcc-14-arm-linux-gnueabihf amd64 14.2.0-6cross1 [19.8 MB] Get:31 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabihf amd64 4:14.2.0-1 [1452 B] Get:32 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armhf-cross all 6.11.2-1cross1 [2228 kB] Get:33 http://localhost:3142/debian sid/main amd64 libc6-dev-armhf-cross all 2.40-3cross1 [1297 kB] Get:34 http://localhost:3142/debian sid/main amd64 libstdc++-14-dev-armhf-cross all 14.2.0-6cross1 [2339 kB] Get:35 http://localhost:3142/debian sid/main amd64 g++-14-arm-linux-gnueabihf amd64 14.2.0-6cross1 [11.4 MB] Get:36 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabihf amd64 4:14.2.0-1 [1208 B] Get:37 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armhf all 12.12 [3548 B] Get:38 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.20 [89.7 kB] Get:39 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:40 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:41 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:42 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get:43 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get:44 http://localhost:3142/debian sid/main amd64 libelf1t64 amd64 0.191-2 [188 kB] Get:45 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:46 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-5 [9396 kB] Get:47 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.1 [699 kB] Get:48 http://localhost:3142/debian sid/main amd64 gettext amd64 0.22.5-2 [1601 kB] Get:49 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:50 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:51 http://localhost:3142/debian sid/main amd64 debhelper all 13.20 [915 kB] Get:52 http://localhost:3142/debian sid/main amd64 libfakeroot amd64 1.36-1 [29.1 kB] Get:53 http://localhost:3142/debian sid/main amd64 fakeroot amd64 1.36-1 [75.1 kB] Get:54 http://localhost:3142/debian sid/main armhf gcc-14-base armhf 14.2.0-6 [46.7 kB] Get:55 http://localhost:3142/debian sid/main armhf libgcc-s1 armhf 14.2.0-6 [37.0 kB] Get:56 http://localhost:3142/debian sid/main armhf libc6 armhf 2.40-3 [2159 kB] Get:57 http://localhost:3142/debian sid/main armhf libasan8 armhf 14.2.0-6 [2579 kB] Get:58 http://localhost:3142/debian sid/main armhf libatomic1 armhf 14.2.0-6 [7060 B] Get:59 http://localhost:3142/debian sid/main armhf libcrypt1 armhf 1:4.4.36-5 [95.5 kB] Get:60 http://localhost:3142/debian sid/main armhf libcrypt-dev armhf 1:4.4.36-5 [125 kB] Get:61 http://localhost:3142/debian sid/main armhf libc6-dev armhf 2.40-3 [1301 kB] Get:62 http://localhost:3142/debian sid/main armhf libgomp1 armhf 14.2.0-6 [111 kB] Get:63 http://localhost:3142/debian sid/main armhf libstdc++6 armhf 14.2.0-6 [607 kB] Get:64 http://localhost:3142/debian sid/main armhf libubsan1 armhf 14.2.0-6 [1038 kB] Get:65 http://localhost:3142/debian sid/main armhf libgcc-14-dev armhf 14.2.0-6 [768 kB] Get:66 http://localhost:3142/debian sid/main armhf libstdc++-14-dev armhf 14.2.0-6 [2371 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 87.9 MB in 0s (184 MB/s) Selecting previously unselected package sensible-utils. (Reading database ... 12969 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_amd64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... 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Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:amd64 (1:5.45-3) ... Setting up gcc-14-arm-linux-gnueabihf-base:amd64 (14.2.0-6cross1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up gcc-14-cross-base (14.2.0-6cross1) ... Setting up file (1:5.45-3) ... Setting up libatomic1-armhf-cross (14.2.0-6cross1) ... Setting up libfakeroot:amd64 (1.36-1) ... Setting up libelf1t64:amd64 (0.191-2) ... Setting up fakeroot (1.36-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up autotools-dev (20220109.1) ... Setting up linux-libc-dev-armhf-cross (6.11.2-1cross1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:amd64 (0.0.8-1+b1) ... Setting up binutils-arm-linux-gnueabihf (2.43.1-5) ... Setting up libxml2:amd64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up cpp-14-arm-linux-gnueabihf (14.2.0-6cross1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgomp1-armhf-cross (14.2.0-6cross1) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up libgcc-s1-armhf-cross (14.2.0-6cross1) ... Setting up libc6-dev-armhf-cross (2.40-3cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libstdc++6-armhf-cross (14.2.0-6cross1) ... Setting up libubsan1-armhf-cross (14.2.0-6cross1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up cpp-arm-linux-gnueabihf (4:14.2.0-1) ... Setting up libasan8-armhf-cross (14.2.0-6cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc-14-dev-armhf-cross (14.2.0-6cross1) ... Setting up libstdc++-14-dev-armhf-cross (14.2.0-6cross1) ... Setting up gcc-14-arm-linux-gnueabihf (14.2.0-6cross1) ... Setting up debhelper (13.20) ... Setting up gcc-arm-linux-gnueabihf (4:14.2.0-1) ... Setting up g++-14-arm-linux-gnueabihf (14.2.0-6cross1) ... Setting up g++-arm-linux-gnueabihf (4:14.2.0-1) ... Setting up crossbuild-essential-armhf (12.12) ... Setting up libgcc-s1:armhf (14.2.0-6) ... Setting up libc6:armhf (2.40-3) ... Setting up libasan8:armhf (14.2.0-6) ... Setting up libstdc++6:armhf (14.2.0-6) ... Setting up libcrypt1:armhf (1:4.4.36-5) ... Setting up libgomp1:armhf (14.2.0-6) ... Setting up libatomic1:armhf (14.2.0-6) ... Setting up libubsan1:armhf (14.2.0-6) ... Setting up libcrypt-dev:armhf (1:4.4.36-5) ... Setting up libc6-dev:armhf (2.40-3) ... Setting up libgcc-14-dev:armhf (14.2.0-6) ... Setting up libstdc++-14-dev:armhf (14.2.0-6) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.40-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-23-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.99-1 (2024-07-15) amd64 (x86_64) Toolchain package versions: binutils_2.43.1-5 dpkg-dev_1.22.11 g++-14_14.2.0-6 gcc-14_14.2.0-6 libc6-dev_2.40-3 libstdc++-14-dev_14.2.0-6 libstdc++-14-dev-armhf-cross_14.2.0-6cross1 libstdc++6_14.2.0-6 libstdc++6-armhf-cross_14.2.0-6cross1 linux-libc-dev_6.11.2-1 Package versions: adduser_3.137 apt_2.9.8 autoconf_2.72-3 automake_1:1.16.5-1.3 autopoint_0.22.5-2 autotools-dev_20220109.1 base-files_13.5 base-passwd_3.6.4 bash_5.2.32-1+b1 binutils_2.43.1-5 binutils-arm-linux-gnueabihf_2.43.1-5 binutils-common_2.43.1-5 binutils-x86-64-linux-gnu_2.43.1-5 bsdextrautils_2.40.2-9 bsdutils_1:2.40.2-9 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.4-3.1 cpp_4:14.2.0-1 cpp-14_14.2.0-6 cpp-14-arm-linux-gnueabihf_14.2.0-6cross1 cpp-14-x86-64-linux-gnu_14.2.0-6 cpp-arm-linux-gnueabihf_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 crossbuild-essential-armhf_12.12 dash_0.5.12-9 debconf_1.5.87 debhelper_13.20 debian-archive-keyring_2023.4 debianutils_5.20 dh-autoreconf_20 dh-strip-nondeterminism_1.14.0-1 diffutils_1:3.10-1 dpkg_1.22.11 dpkg-dev_1.22.11 dwz_0.15-1+b1 fakeroot_1.36-1 file_1:5.45-3 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-6 g++-14-arm-linux-gnueabihf_14.2.0-6cross1 g++-14-x86-64-linux-gnu_14.2.0-6 g++-arm-linux-gnueabihf_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-6 gcc-14-arm-linux-gnueabihf_14.2.0-6cross1 gcc-14-arm-linux-gnueabihf-base_14.2.0-6cross1 gcc-14-base_14.2.0-6 gcc-14-cross-base_14.2.0-6cross1 gcc-14-x86-64-linux-gnu_14.2.0-6 gcc-arm-linux-gnueabihf_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.22.5-2 gettext-base_0.22.5-2 gpgv_2.2.44-1 grep_3.11-4 groff-base_1.23.0-5 gzip_1.12-1.1 hostname_3.25 init-system-helpers_1.67 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2 libapt-pkg6.0t64_2.9.8 libarchive-zip-perl_1.68-1 libasan8_14.2.0-6 libasan8-armhf-cross_14.2.0-6cross1 libatomic1_14.2.0-6 libatomic1-armhf-cross_14.2.0-6cross1 libattr1_1:2.5.2-2 libaudit-common_1:4.0.1-1 libaudit1_1:4.0.1-1 libbinutils_2.43.1-5 libblkid1_2.40.2-9 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.40-3 libc-dev-bin_2.40-3 libc6_2.40-3 libc6-armhf-cross_2.40-3cross1 libc6-dev_2.40-3 libc6-dev-armhf-cross_2.40-3cross1 libcap-ng0_0.8.5-2 libcap2_1:2.66-5 libcc1-0_14.2.0-6 libcrypt-dev_1:4.4.36-5 libcrypt1_1:4.4.36-5 libctf-nobfd0_2.43.1-5 libctf0_2.43.1-5 libdb5.3t64_5.3.28+dfsg2-8 libdebconfclient0_0.272 libdebhelper-perl_13.20 libdpkg-perl_1.22.11 libelf1t64_0.191-2 libfakeroot_1.36-1 libffi8_3.4.6-1 libfile-stripnondeterminism-perl_1.14.0-1 libgcc-14-dev_14.2.0-6 libgcc-14-dev-armhf-cross_14.2.0-6cross1 libgcc-s1_14.2.0-6 libgcc-s1-armhf-cross_14.2.0-6cross1 libgcrypt20_1.11.0-6 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp10_2:6.3.0+dfsg-2+b1 libgnutls30t64_3.8.6-2 libgomp1_14.2.0-6 libgomp1-armhf-cross_14.2.0-6cross1 libgpg-error0_1.50-4 libgprofng0_2.43.1-5 libhogweed6t64_3.10-1 libhwasan0_14.2.0-6 libicu72_72.1-5 libidn2-0_2.3.7-2 libisl23_0.27-1 libitm1_14.2.0-6 libjansson4_2.14-2+b2 liblsan0_14.2.0-6 liblz4-1_1.9.4-3 liblzma5_5.6.2-2 libmagic-mgc_1:5.45-3 libmagic1t64_1:5.45-3 libmd0_1.1.0-2 libmount1_2.40.2-9 libmpc3_1.3.1-1+b2 libmpfr6_4.2.1-1+b1 libnettle8t64_3.10-1 libp11-kit0_0.25.5-2 libpam-modules_1.5.3-7 libpam-modules-bin_1.5.3-7 libpam-runtime_1.5.3-7 libpam0g_1.5.3-7 libpcre2-8-0_10.42-4+b1 libperl5.40_5.40.0-6 libpipeline1_1.5.8-1 libquadmath0_14.2.0-6 libseccomp2_2.5.5-1+b1 libselinux1_3.7-3 libsemanage-common_3.7-2 libsemanage2_3.7-2 libsepol2_3.7-1 libsframe1_2.43.1-5 libsmartcols1_2.40.2-9 libssl3t64_3.3.2-1 libstdc++-14-dev_14.2.0-6 libstdc++-14-dev-armhf-cross_14.2.0-6cross1 libstdc++6_14.2.0-6 libstdc++6-armhf-cross_14.2.0-6cross1 libsystemd0_256.7-1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.5-2 libtool_2.4.7-7 libtsan2_14.2.0-6 libubsan1_14.2.0-6 libubsan1-armhf-cross_14.2.0-6cross1 libuchardet0_0.0.8-1+b1 libudev1_256.7-1 libunistring5_1.2-1 libuuid1_2.40.2-9 libxml2_2.12.7+dfsg+really2.9.14-0.1 libxxhash0_0.8.2-2+b1 libzstd1_1.5.6+dfsg-1 linux-libc-dev_6.11.2-1 linux-libc-dev-armhf-cross_6.11.2-1cross1 login_1:4.16.0-2+really2.40.2-9 login.defs_1:4.16.0-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.13.0-1 mawk_1.3.4.20240905-1 mount_2.40.2-9 ncurses-base_6.5-2 ncurses-bin_6.5-2 openssl-provider-legacy_3.3.2-1 passwd_1:4.16.0-4 patch_2.7.6-7 perl_5.40.0-6 perl-base_5.40.0-6 perl-modules-5.40_5.40.0-6 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.24 sysvinit-utils_3.10-2 tar_1.35+dfsg-3 tzdata_2024b-3 usr-is-merged_39 util-linux_2.40.2-9 xz-utils_5.6.2-2 zlib1g_1:1.3.dfsg+really1.3.1-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: yaha Binary: yaha Architecture: any Version: 0.1.83-3 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/GregoryFaust/yaha Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/yaha Vcs-Git: https://salsa.debian.org/med-team/yaha.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: yaha deb science optional arch=any Checksums-Sha1: df230e7cf1745ee30a8f67d07c136e08f9d12038 104294292 yaha_0.1.83.orig.tar.gz b0d910e3d817b6bad1780e569a594fcde22bb8aa 5124 yaha_0.1.83-3.debian.tar.xz Checksums-Sha256: 76e052cd92630c6e9871412e37e46f18bfbbf7fc5dd2f345b3b9a73eb74939ef 104294292 yaha_0.1.83.orig.tar.gz 4652f7804fb4e083d35e8afd0d0b8d9ac6fc31556e549fecd36894eee52ae94a 5124 yaha_0.1.83-3.debian.tar.xz Files: 1641c06cdb57a8220c9fa1e1aaa5e531 104294292 yaha_0.1.83.orig.tar.gz 92e8f8e5a5a36eb224ecbe7956e57fd7 5124 yaha_0.1.83-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmEZTdQUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafHFtg/7BohncoSYqKOcLhSjjhtcDxnouGN5 rPDrohdnDpaAMRNnCQ9keKGd2jFzhRORMknXZxZkAuK3gGv12p6LEIwYh9HVhDqX JqQjEi83mN9dmRxX21RK80db/ah8N/LsOuyhghyBBbCRIB3y4buB8fofDQWJoLdr Tw7ubuIGQYvnMppvNDsQsAvhO+g9H61iN8XfqmKLil5li5QzpQpO5uCnvydNrQ3V 3ltbBFAt1ZK9Rk1HkJv7qt6w1XblR5Cqwf2pQSTSrvmK1zqLguS3ddOg/XMJXi2t CfZ+2D6dgLce5xPMWmaUFssGCQxiCKHQ17cFGxrRY74ijHxnFWZgkCbcvFwYD+1Y srsef4pkN6enucSFgnP3OHm84SkqW6OY8fI54Z6YPCUv28oPveOJnGNqx/Uj3dcL 4cqNFF39hRl5xpoA+wA9c9FXXq84ruAF36o9TlgSp9QJ30w3n6km5jp8RVUjhnWe P3d+x2Dp2cPW7Zyb+31K6G6aMsg/Q23w/mr55lGtSGXXz0mQBDFtc8HVMRkPVPxb BFGiaMbvu0Su/+tjXeyn/OCY3rkA9LLGJILDJjwa6bE+urEt7//3QO6Kjw7anwvT bNvzb0qktM9JJHPWdJdiHbwVBvuWFxqGtwe4an78DGuTdPg4MgyCY4eFr2Zhwchd pzWNQc+C40RZOgs= =1G87 -----END PGP SIGNATURE----- gpgv: Signature made Sun Aug 15 17:24:36 2021 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./yaha_0.1.83-3.dsc: no acceptable signature found dpkg-source: info: extracting yaha in /<> dpkg-source: info: unpacking yaha_0.1.83.orig.tar.gz dpkg-source: info: unpacking yaha_0.1.83-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Makefile.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.w8YAqMEzdH/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-2de0de2d-377b-4e69-99f3-6a3d18c70c96 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package yaha dpkg-buildpackage: info: source version 0.1.83-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Shruti Sridhar dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -Rf obj rm -Rf bin make[1]: Leaving directory '/<>' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/yaha.substvars debian/files rm -fr -- debian/yaha/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc make[1]: Entering directory '/<>' mkdir -p obj mkdir -p bin arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/Main.c -o obj/Main.o src/Main.c: In function ‘main’: src/Main.c:640:54: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 3 has type ‘long int’ [-Wformat=] 640 | fprintf(stderr, "Number of non-IO page faults: %zd, Number of IO page faults: %zd.\n", usagebuf.ru_minflt, usagebuf.ru_majflt); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | int long int | %ld src/Main.c:640:85: warning: format ‘%zd’ expects argument of type ‘signed size_t’, but argument 4 has type ‘long int’ [-Wformat=] 640 | fprintf(stderr, "Number of non-IO page faults: %zd, Number of IO page faults: %zd.\n", usagebuf.ru_minflt, usagebuf.ru_majflt); | ~~^ ~~~~~~~~~~~~~~~~~~ | | | | int long int | %ld arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/AlignArgs.c -o obj/AlignArgs.o arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/AlignHelpers.c -o obj/AlignHelpers.o arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/AlignExtFrag.cpp -o obj/AlignExtFrag.o arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/AlignOutput.c -o obj/AlignOutput.o arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/BaseSeq.c -o obj/BaseSeq.o arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/Compress.c -o obj/Compress.o arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/FileHelpers.c -o obj/FileHelpers.o arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/GraphPath.cpp -o obj/GraphPath.o arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/Index.c -o obj/Index.o arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/Query.c -o obj/Query.o arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/QueryMatch.c -o obj/QueryMatch.o arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/QueryState.c -o obj/QueryState.o arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fpermissive -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/SW.cpp -o obj/SW.o src/SW.cpp:799:5: warning: redeclaration of ‘template int findAffineGapScore(QueryState_t*, char*, SUINT, char*, SUINT, EditOpList_t*, SUINT*, SUINT*)’ may not have default arguments [-fpermissive] 799 | int findAffineGapScore(QueryState_t * QS, char * qStr, SUINT qLen, char * rStr, SUINT rLen, EditOpList_t * list, SUINT * addedQLen = NULL, SUINT * addedRLen = NULL) | ^~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -D BUILDNUM=83 -MMD -MP -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -c src/Math.c -o obj/Math.o arm-linux-gnueabihf-g++ -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -pthread -o bin/yaha obj/Main.o obj/AlignArgs.o obj/AlignHelpers.o obj/AlignExtFrag.o obj/AlignOutput.o obj/BaseSeq.o obj/Compress.o obj/FileHelpers.o obj/GraphPath.o obj/Index.o obj/Query.o obj/QueryMatch.o obj/QueryState.o obj/SW.o obj/Math.o make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a rm -f -- debian/yaha.substvars rm -fr -- debian/.debhelper/generated/yaha/ debian/yaha/ debian/tmp/ dh_auto_install --destdir=debian/yaha/ -a install -m0755 -d /<>/debian/yaha dh_install -a install -m0755 -d debian/yaha/usr/bin cp --reflink=auto -a ./bin/yaha debian/yaha/usr/bin/ dh_installdocs -a install -m0755 -d debian/yaha/usr/share/doc/yaha install -p -m0644 debian/copyright debian/yaha/usr/share/doc/yaha/copyright dh_installchangelogs -a install -m0755 -d debian/yaha/usr/share/doc/yaha install -p -m0644 debian/.debhelper/generated/yaha/dh_installchangelogs.dch.trimmed debian/yaha/usr/share/doc/yaha/changelog.Debian dh_installman -a install -m0755 -d debian/yaha/usr/share/man/man1/ install -p -m0644 ./debian/yaha.1 debian/yaha/usr/share/man/man1/yaha.1 man-recode --to-code UTF-8 --suffix .dh-new debian/yaha/usr/share/man/man1/yaha.1 mv debian/yaha/usr/share/man/man1/yaha.1.dh-new debian/yaha/usr/share/man/man1/yaha.1 chmod 0644 -- debian/yaha/usr/share/man/man1/yaha.1 dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a cd debian/yaha chmod a-x usr/share/doc/yaha/changelog.Debian usr/share/man/man1/yaha.1 gzip -9nf usr/share/doc/yaha/changelog.Debian usr/share/man/man1/yaha.1 cd '/<>' dh_fixperms -a find debian/yaha ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/yaha/usr/share/doc -type f -a -true -a ! -regex 'debian/yaha/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/yaha/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/yaha/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/yaha -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/yaha/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x dh_missing -a dh_dwz -a dwz -- debian/yaha/usr/bin/yaha dh_strip -a install -m0755 -d debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/d9 arm-linux-gnueabihf-objcopy --only-keep-debug --compress-debug-sections debian/yaha/usr/bin/yaha debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/d9/41253b4dc18bd777c7cc76cf701d53d343222a.debug chmod 0644 -- debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/d9/41253b4dc18bd777c7cc76cf701d53d343222a.debug arm-linux-gnueabihf-strip --remove-section=.comment --remove-section=.note debian/yaha/usr/bin/yaha arm-linux-gnueabihf-objcopy --add-gnu-debuglink debian/.debhelper/yaha/dbgsym-root/usr/lib/debug/.build-id/d9/41253b4dc18bd777c7cc76cf701d53d343222a.debug debian/yaha/usr/bin/yaha install -m0755 -d debian/.debhelper/yaha/dbgsym-root/usr/share/doc ln -s yaha debian/.debhelper/yaha/dbgsym-root/usr/share/doc/yaha-dbgsym install -m0755 -d debian/.debhelper/yaha dh_makeshlibs -a rm -f debian/yaha/DEBIAN/shlibs dh_shlibdeps -a install -m0755 -d debian/yaha/DEBIAN dpkg-shlibdeps -Tdebian/yaha.substvars debian/yaha/usr/bin/yaha dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-armhf.so.3 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-armhf.so.3.usr-is-merged dh_installdeb -a install -m0755 -d debian/yaha/DEBIAN dh_gencontrol -a install -m0755 -d debian/yaha/DEBIAN echo misc:Depends= >> debian/yaha.substvars echo misc:Pre-Depends= >> debian/yaha.substvars install -m0755 -d debian/.debhelper/yaha/dbgsym-root/DEBIAN dpkg-gencontrol -pyaha -ldebian/changelog -Tdebian/yaha.substvars -cdebian/control -Pdebian/.debhelper/yaha/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=yaha-dbgsym "-DDepends=yaha (= \${binary:Version})" "-DDescription=debug symbols for yaha" -DBuild-Ids=d941253b4dc18bd777c7cc76cf701d53d343222a -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/yaha/dbgsym-root/DEBIAN/control dpkg-gencontrol -pyaha -ldebian/changelog -Tdebian/yaha.substvars -cdebian/control -Pdebian/yaha chmod 0644 -- debian/yaha/DEBIAN/control dh_md5sums -a install -m0755 -d debian/yaha/DEBIAN cd debian/yaha >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/yaha/DEBIAN/md5sums install -m0755 -d debian/.debhelper/yaha/dbgsym-root/DEBIAN cd debian/.debhelper/yaha/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/yaha/dbgsym-root/DEBIAN/md5sums dh_builddeb -a dpkg-deb --root-owner-group --build debian/yaha .. dpkg-deb: building package 'yaha' in '../yaha_0.1.83-3_armhf.deb'. dpkg-deb --root-owner-group --build debian/.debhelper/yaha/dbgsym-root .. dpkg-deb: building package 'yaha-dbgsym' in '../yaha-dbgsym_0.1.83-3_armhf.deb'. dpkg-genbuildinfo --build=any -O../yaha_0.1.83-3_armhf.buildinfo dpkg-genchanges --build=any -O../yaha_0.1.83-3_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-10-15T05:05:40Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ yaha_0.1.83-3_armhf.changes: ---------------------------- Format: 1.8 Date: Sun, 15 Aug 2021 22:51:41 +0530 Source: yaha Binary: yaha yaha-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 0.1.83-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Shruti Sridhar Description: yaha - find split-read mappings on single-end queries Changes: yaha (0.1.83-3) unstable; urgency=medium . [ Shruti Sridhar ] * Team upload * Add autopkgtests * Install README as docs . [ Nilesh Patra ] * Add CPPFLAGS for hardening * Declare compliance with policy 4.5.1 Checksums-Sha1: b0a1180abb2887bfe8a5df6917b3f3e00675bbca 169220 yaha-dbgsym_0.1.83-3_armhf.deb 216ab39048a3ef9821dd52e3635692502ce25063 4797 yaha_0.1.83-3_armhf.buildinfo c9213090141a23bdc1c93e534992693196c2c64f 38060 yaha_0.1.83-3_armhf.deb Checksums-Sha256: 456cb3dea17a1604fcfe65f1edcc87fa2ce5381acfb272a52cca218362f65567 169220 yaha-dbgsym_0.1.83-3_armhf.deb 7a855a0031f5d64ef8fa4deb6e001a870a11664dc5506f3b6c5e4620ed5a83d4 4797 yaha_0.1.83-3_armhf.buildinfo e68b0a92e9cf45054ac2a9224d0e9ca1e0b1c44a08e020f5c96f5206fba5d168 38060 yaha_0.1.83-3_armhf.deb Files: c6800b23a98f3d2183b5bc659b183482 169220 debug optional yaha-dbgsym_0.1.83-3_armhf.deb 270470baa44eb67e7cc6347c9995567e 4797 science optional yaha_0.1.83-3_armhf.buildinfo 060d37db61378e72a853404dc08215ef 38060 science optional yaha_0.1.83-3_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: yaha Binary: yaha yaha-dbgsym Architecture: armhf Version: 0.1.83-3 Checksums-Md5: c6800b23a98f3d2183b5bc659b183482 169220 yaha-dbgsym_0.1.83-3_armhf.deb 060d37db61378e72a853404dc08215ef 38060 yaha_0.1.83-3_armhf.deb Checksums-Sha1: b0a1180abb2887bfe8a5df6917b3f3e00675bbca 169220 yaha-dbgsym_0.1.83-3_armhf.deb c9213090141a23bdc1c93e534992693196c2c64f 38060 yaha_0.1.83-3_armhf.deb Checksums-Sha256: 456cb3dea17a1604fcfe65f1edcc87fa2ce5381acfb272a52cca218362f65567 169220 yaha-dbgsym_0.1.83-3_armhf.deb e68b0a92e9cf45054ac2a9224d0e9ca1e0b1c44a08e020f5c96f5206fba5d168 38060 yaha_0.1.83-3_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 15 Oct 2024 05:05:40 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.16.5-1.3), autopoint (= 0.22.5-2), autotools-dev (= 20220109.1), base-files (= 13.5), base-passwd (= 3.6.4), bash (= 5.2.32-1+b1), binutils (= 2.43.1-5), binutils-common (= 2.43.1-5), binutils-x86-64-linux-gnu (= 2.43.1-5), bsdextrautils (= 2.40.2-9), bsdutils (= 1:2.40.2-9), build-essential (= 12.12), bzip2 (= 1.0.8-6), coreutils (= 9.4-3.1), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-6), cpp-14-x86-64-linux-gnu (= 14.2.0-6), cpp-x86-64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-9), debconf (= 1.5.87), debhelper (= 13.20), debianutils (= 5.20), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.0-1), diffutils (= 1:3.10-1), dpkg (= 1.22.11), dpkg-dev (= 1.22.11), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.10.0-3), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-6), g++-14-x86-64-linux-gnu (= 14.2.0-6), g++-x86-64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-6), gcc-14-base (= 14.2.0-6), gcc-14-x86-64-linux-gnu (= 14.2.0-6), gcc-x86-64-linux-gnu (= 4:14.2.0-1), gettext (= 0.22.5-2), gettext-base (= 0.22.5-2), grep (= 3.11-4), groff-base (= 1.23.0-5), gzip (= 1.12-1.1), hostname (= 3.25), init-system-helpers (= 1.67), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14.2.0-6), libatomic1 (= 14.2.0-6), libattr1 (= 1:2.5.2-2), libaudit-common (= 1:4.0.1-1), libaudit1 (= 1:4.0.1-1), libbinutils (= 2.43.1-5), libblkid1 (= 2.40.2-9), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.40-3), libc-dev-bin (= 2.40-3), libc6 (= 2.40-3), libc6-dev (= 2.40-3), libcap-ng0 (= 0.8.5-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14.2.0-6), libcrypt-dev (= 1:4.4.36-5), libcrypt1 (= 1:4.4.36-5), libctf-nobfd0 (= 2.43.1-5), libctf0 (= 2.43.1-5), libdb5.3t64 (= 5.3.28+dfsg2-8), libdebconfclient0 (= 0.272), libdebhelper-perl (= 13.20), libdpkg-perl (= 1.22.11), libelf1t64 (= 0.191-2), libfile-stripnondeterminism-perl (= 1.14.0-1), libgcc-14-dev (= 14.2.0-6), libgcc-s1 (= 14.2.0-6), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14.2.0-6), libgprofng0 (= 2.43.1-5), libhwasan0 (= 14.2.0-6), libicu72 (= 72.1-5), libisl23 (= 0.27-1), libitm1 (= 14.2.0-6), libjansson4 (= 2.14-2+b2), liblsan0 (= 14.2.0-6), liblzma5 (= 5.6.2-2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40.2-9), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpcre2-8-0 (= 10.42-4+b1), libperl5.40 (= 5.40.0-6), libpipeline1 (= 1.5.8-1), libquadmath0 (= 14.2.0-6), libseccomp2 (= 2.5.5-1+b1), libselinux1 (= 3.7-3), libsframe1 (= 2.43.1-5), libsmartcols1 (= 2.40.2-9), libssl3t64 (= 3.3.2-1), libstdc++-14-dev (= 14.2.0-6), libstdc++6 (= 14.2.0-6), libsystemd0 (= 256.7-1), libtinfo6 (= 6.5-2), libtool (= 2.4.7-7), libtsan2 (= 14.2.0-6), libubsan1 (= 14.2.0-6), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 256.7-1), libunistring5 (= 1.2-1), libuuid1 (= 2.40.2-9), libxml2 (= 2.12.7+dfsg+really2.9.14-0.1), libzstd1 (= 1.5.6+dfsg-1), linux-libc-dev (= 6.11.2-1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.13.0-1), mawk (= 1.3.4.20240905-1), ncurses-base (= 6.5-2), ncurses-bin (= 6.5-2), openssl-provider-legacy (= 3.3.2-1), patch (= 2.7.6-7), perl (= 5.40.0-6), perl-base (= 5.40.0-6), perl-modules-5.40 (= 5.40.0-6), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.24), sysvinit-utils (= 3.10-2), tar (= 1.35+dfsg-3), usr-is-merged (= 39), util-linux (= 2.40.2-9), xz-utils (= 5.6.2-2), zlib1g (= 1:1.3.dfsg+really1.3.1-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1629048101" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ yaha-dbgsym_0.1.83-3_armhf.deb ------------------------------ new Debian package, version 2.0. size 169220 bytes: control archive=532 bytes. 360 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: yaha-dbgsym Source: yaha Version: 0.1.83-3 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 186 Depends: yaha (= 0.1.83-3) Section: debug Priority: optional Description: debug symbols for yaha Build-Ids: d941253b4dc18bd777c7cc76cf701d53d343222a drwxr-xr-x root/root 0 2021-08-15 17:21 ./ drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/ drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/lib/ drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/lib/debug/.build-id/d9/ -rw-r--r-- root/root 179900 2021-08-15 17:21 ./usr/lib/debug/.build-id/d9/41253b4dc18bd777c7cc76cf701d53d343222a.debug drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/share/ drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-08-15 17:21 ./usr/share/doc/yaha-dbgsym -> yaha yaha_0.1.83-3_armhf.deb ----------------------- new Debian package, version 2.0. size 38060 bytes: control archive=1064 bytes. 1127 bytes, 23 lines control 246 bytes, 4 lines md5sums Package: yaha Version: 0.1.83-3 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 76 Depends: libc6 (>= 2.34), libgcc-s1 (>= 3.5) Section: science Priority: optional Homepage: https://github.com/GregoryFaust/yaha Description: find split-read mappings on single-end queries yaha is an open source, flexible, sensitive and accurate DNA aligner designed for single-end reads. It supports three major modes of operation: * The default “Optimal Query Coverage” (-OQC) mode reports the best set of alignments that cover the length of each query. * Using “Filter By Similarity” (-FBS), along with the best set of alignments, yaha will also output alignments that are highly similar to an alignment in the best set. * Finally, yaha can output all the alignments found for each query. The -OQC and -FBS modes are specifically tuned to form split read mappings that can be used to accurately identify structural variation events (deletions, duplications, insertions or inversions) between the subject query and the reference genome. drwxr-xr-x root/root 0 2021-08-15 17:21 ./ drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/ drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/bin/ -rwxr-xr-x root/root 63436 2021-08-15 17:21 ./usr/bin/yaha drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/share/ drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/share/doc/yaha/ -rw-r--r-- root/root 538 2021-08-15 17:21 ./usr/share/doc/yaha/changelog.Debian.gz -rw-r--r-- root/root 1340 2021-06-03 09:05 ./usr/share/doc/yaha/copyright drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/share/man/ drwxr-xr-x root/root 0 2021-08-15 17:21 ./usr/share/man/man1/ -rw-r--r-- root/root 1338 2021-08-15 17:21 ./usr/share/man/man1/yaha.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1296 B] Get:5 copy:/<>/apt_archive ./ Packages [1375 B] Fetched 3286 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The solver encountered an error of type: ERR_UNSOLVABLE The following information might help you to understand what is wrong: Unsatisfied dependencies: libnetaddr-ip-perl : Depends: perlapi-5.38.2 but it is not installable libsyntax-keyword-try-perl : Depends: perlapi-5.38.2 but it is not installable libsereal-encoder-perl : Depends: perlapi-5.38.2 but it is not installable libtext-xslate-perl : Depends: perlapi-5.38.2 but it is not installable Depends: libdata-messagepack-perl but it is not going to be installed Depends: libmouse-perl but it is not going to be installed libparams-classify-perl : Depends: libdevel-callchecker-perl but it is not going to be installed Depends: perlapi-5.38.2 but it is not installable libhtml-parser-perl : Depends: perlapi-5.38.2 but it is not installable libberkeleydb-perl : Depends: perlapi-5.38.2 but it is not installable libunicode-utf8-perl : Depends: perlapi-5.38.2 but it is not installable libparams-util-perl : Depends: perlapi-5.38.2 but it is not installable libtime-moment-perl : Depends: perlapi-5.38.2 but it is not installable libclone-perl : Depends: perlapi-5.38.2 but it is not installable libcpanel-json-xs-perl : Depends: perlapi-5.38.2 but it is not installable Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:armhf : Depends: lintian:amd64 E: External solver failed with: Unsatisfied dependencies: apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 118880 Build-Time: 6 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 8 Job: yaha_0.1.83-3 Lintian: error Machine Architecture: amd64 Package: yaha Package-Time: 26 Source-Version: 0.1.83-3 Space: 118880 Status: successful Version: 0.1.83-3 -------------------------------------------------------------------------------- Finished at 2024-10-15T05:05:40Z Build needed 00:00:26, 118880k disk space